Miyakogusa Predicted Gene

Lj2g3v0911670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0911670.1 tr|A9T9S5|A9T9S5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_168816,44.35,5e-18,GIY-YIG type nucleases (URI
domain),UvrABC system subunit C, N-terminal,CUFF.35645.1
         (474 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g090060.1 | transcription factor, putative | HC | chr7:353...   562   e-160
Medtr6g092520.1 | effector of transcription protein | HC | chr6:...   509   e-144
Medtr6g092500.1 | transmembrane protein, putative | HC | chr6:34...   124   2e-28
Medtr6g092480.1 | hypothetical protein | LC | chr6:34821469-3481...    94   2e-19

>Medtr7g090060.1 | transcription factor, putative | HC |
           chr7:35333610-35337296 | 20130731
          Length = 379

 Score =  562 bits (1449), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/376 (74%), Positives = 318/376 (84%), Gaps = 9/376 (2%)

Query: 6   VNNRLKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYEL 65
           V NRLKREQCDRTKHDS+FS WKILIGPSDWED+SK KEGS RYRIHNL +  G GVYEL
Sbjct: 2   VVNRLKREQCDRTKHDSSFSRWKILIGPSDWEDYSKEKEGSTRYRIHNLPQKLGPGVYEL 61

Query: 66  GIAVSRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNS-GSDDASP 124
           G+AVSRS LGREIYKL + DP+R+VVVYLG+ADNVRARLQ YGR+GAHL N+  SDD+S 
Sbjct: 62  GVAVSRSNLGREIYKL-STDPRRIVVVYLGKADNVRARLQRYGRNGAHLSNTCMSDDSSL 120

Query: 125 QKGRPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILR 184
           + GR LFQEIFSQGFPIVYRWAPMQN+ DALRTE+QLL TFDYAWNT +NGTRRPDDI +
Sbjct: 121 RTGRSLFQEIFSQGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDIHQ 180

Query: 185 MLNKIASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGSNNFLSRVFK 244
           MLNK+AS TRTFSDVAK++LPFTQ++VGI I+SSKL L +DK  DEADSGS N LSRVFK
Sbjct: 181 MLNKLASGTRTFSDVAKLILPFTQKKVGIPIKSSKLHLTDDKL-DEADSGSYNVLSRVFK 239

Query: 245 FNRSRPRIVQDITSG-VIQENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAK 303
           FNRSRPRIVQD T G    ENAKICGV L DGSIC++PP EKR+RCPEHKGMR N ST K
Sbjct: 240 FNRSRPRIVQDTTVGSATNENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTK 299

Query: 304 AIKAPESKSVS-----YRYQNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRR 358
           AI++P+S+  S     YRYQNASHD++DPPQ  V+  V+E IT+T ICGI+LD+G  CRR
Sbjct: 300 AIRSPKSELESIVRNAYRYQNASHDVEDPPQRTVKCHVEEGITKTIICGIILDDGSTCRR 359

Query: 359 EPVKGRKRCQEHKGMR 374
           +PVKGRKRCQEHKG R
Sbjct: 360 QPVKGRKRCQEHKGRR 375



 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 87/124 (70%), Gaps = 7/124 (5%)

Query: 345 ICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKAPKSEDIVLPYEFPQTEGNG 404
           ICG++L +G  C+R PV+ R RC EHKGMR N ST K I++PKSE             N 
Sbjct: 263 ICGVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTKAIRSPKSE-------LESIVRNA 315

Query: 405 YRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGSTCRRQPVKGRKRCLEHKGRR 464
           YRYQN SHDV+DPPQ  V   V E I  T ICGIILDDGSTCRRQPVKGRKRC EHKGRR
Sbjct: 316 YRYQNASHDVEDPPQRTVKCHVEEGITKTIICGIILDDGSTCRRQPVKGRKRCQEHKGRR 375

Query: 465 IRAS 468
           IRA+
Sbjct: 376 IRAN 379



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 418 PQALVGSPVGEIIN-NTNICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRAS 468
           P+ +  + VG   N N  ICG++L DGS C+R PV+ R RC EHKG RI AS
Sbjct: 245 PRIVQDTTVGSATNENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINAS 296


>Medtr6g092520.1 | effector of transcription protein | HC |
           chr6:34836373-34834741 | 20130731
          Length = 368

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/367 (70%), Positives = 294/367 (80%), Gaps = 10/367 (2%)

Query: 10  LKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGIAV 69
           LKREQCD TKHDS+FSHWKILIGPSDWED+SKGKEGS RYRIHNL +NSG GVYELG+A 
Sbjct: 2   LKREQCDYTKHDSSFSHWKILIGPSDWEDYSKGKEGSTRYRIHNLPENSGPGVYELGVAA 61

Query: 70  SRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGNSGSD-DASPQKGR 128
           S SGLGREIYKL + D  RVVVVYLG+ DNVR RLQCYGR+GAHLGN  S  ++S QKG 
Sbjct: 62  STSGLGREIYKL-STDSCRVVVVYLGKGDNVRTRLQCYGRNGAHLGNGCSSFESSHQKGH 120

Query: 129 PLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILRMLNK 188
            LF EIF QGFPIVYRWA MQ K DAL+TE+QLL TFDYAWNT NNG RRP DIL MLNK
Sbjct: 121 SLFHEIFLQGFPIVYRWASMQTKGDALQTESQLLSTFDYAWNTINNGPRRPGDILEMLNK 180

Query: 189 IASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGSNNFLSRVFKFNRS 248
           I+S TRTFSDVAK LLPFTQ++VGI I+SS LP+ ++KS +E DSG+ NFLSRVFKFNRS
Sbjct: 181 ISSDTRTFSDVAKSLLPFTQKKVGIPIKSSMLPVKDNKS-NEVDSGNYNFLSRVFKFNRS 239

Query: 249 RPRIVQDITSGVIQENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAP 308
           RP+IVQD     +++  KICGV L DGSIC K P EKR+RC EHKGMR  + TAK+    
Sbjct: 240 RPKIVQDKADFSVEKKDKICGVILDDGSICTKTPVEKRVRCHEHKGMR--IRTAKS---- 293

Query: 309 ESK-SVSYRYQNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRREPVKGRKRC 367
           ESK   + RYQN  HD++D PQT+VE  VDE IT+T  CGI+L++G  CRR+PVKGRKRC
Sbjct: 294 ESKRGNACRYQNIKHDVEDLPQTVVESLVDESITKTITCGIILEDGTTCRRQPVKGRKRC 353

Query: 368 QEHKGMR 374
            +HKG R
Sbjct: 354 HDHKGKR 360



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 112/203 (55%), Gaps = 22/203 (10%)

Query: 271 TLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKSVSYRYQNASHDIKDPPQT 330
           T  D +    P  +K++  P    +++++   K  K+ E  S +Y + +           
Sbjct: 187 TFSDVAKSLLPFTQKKVGIP----IKSSMLPVKDNKSNEVDSGNYNFLSRVFKFNRSRPK 242

Query: 331 LVERPVDEIITQTN-ICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKAPKSE 389
           +V+   D  + + + ICG++LD+G  C + PV+ R RC EHKGMR        I+  KSE
Sbjct: 243 IVQDKADFSVEKKDKICGVILDDGSICTKTPVEKRVRCHEHKGMR--------IRTAKSE 294

Query: 390 DIVLPYEFPQTEGNGYRYQNVSHDVKDPPQALVGSPVGEIINNTNICGIILDDGSTCRRQ 449
                       GN  RYQN+ HDV+D PQ +V S V E I  T  CGIIL+DG+TCRRQ
Sbjct: 295 ---------SKRGNACRYQNIKHDVEDLPQTVVESLVDESITKTITCGIILEDGTTCRRQ 345

Query: 450 PVKGRKRCLEHKGRRIRASFHVN 472
           PVKGRKRC +HKG+RIRA   +N
Sbjct: 346 PVKGRKRCHDHKGKRIRAFVPIN 368


>Medtr6g092500.1 | transmembrane protein, putative | HC |
           chr6:34831512-34825268 | 20130731
          Length = 159

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 74/107 (69%), Gaps = 6/107 (5%)

Query: 10  LKREQCDRTKHDSNFSHWKILIGPSDWEDFSKGKEGSARYRIHNLHKNSGSGVYELGIAV 69
           LKREQCD TKHDS+FSHWK+LI PSDW     G  G  RY+  NL +N   GVYELG+  
Sbjct: 49  LKREQCDHTKHDSSFSHWKVLIDPSDW-----GNHGYTRYKKENLPQNFSVGVYELGVGS 103

Query: 70  SRSGLGREIYKLVAADPQRVVVVYLGEADNVRARLQCYGRSGAHLGN 116
           S S LG EIYKL A DP  VVVVY+G++ +VR  LQ Y + G HLG+
Sbjct: 104 STSDLGCEIYKL-ATDPHGVVVVYIGKSVDVRKILQSYSKDGGHLGD 149


>Medtr6g092480.1 | hypothetical protein | LC |
           chr6:34821469-34818292 | 20130731
          Length = 669

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 26/107 (24%)

Query: 129 PLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRRPDDILRMLNK 188
            LF EI  QGFPIVYRWA M+   +A + ++Q+L+TFDYAWN  +NG RRP+DIL+MLN 
Sbjct: 9   SLFHEIIFQGFPIVYRWASMKTDGEACKVKSQMLETFDYAWNKVDNGKRRPNDILQMLNI 68

Query: 189 IASSTRTFSDVAKVLLPFTQRQVGIQIESSKLPLANDKSDDEADSGS 235
           I+                          S+KLP+ NDK D+  ++ S
Sbjct: 69  IS--------------------------SNKLPITNDKLDEAGNNSS 89



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 274 DGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKS 312
           DGSIC KPPAEKR+ C EHKGMR NV +AKAI+  +S+S
Sbjct: 311 DGSICTKPPAEKRVSCQEHKGMRLNVFSAKAIRRSKSES 349