Miyakogusa Predicted Gene

Lj2g3v0907500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0907500.1 Non Characterized Hit- tr|I1KJT4|I1KJT4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53330
PE,77.78,3e-19,seg,NULL; DUF1070,Arabinogalactan peptide,
AGP,NODE_28316_length_525_cov_213.746674.path2.1
         (63 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090535.1 | arabinogalactan protein | HC | chr6:34411665-3...    72   2e-13
Medtr8g099245.1 | arabinogalactan peptide-like protein | HC | ch...    49   1e-06
Medtr3g090830.1 | arabinogalactan peptide-like protein | HC | ch...    46   7e-06

>Medtr6g090535.1 | arabinogalactan protein | HC |
          chr6:34411665-34410320 | 20130731
          Length = 63

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 48/63 (76%)

Query: 1  MEVFRVQLFVMSILALAIAFVIPSINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTY 60
          M+V RVQL  M I +LA+AFV+PSINAQ+PAPAPAPTSDG T+DQG+A +        TY
Sbjct: 1  MDVLRVQLLFMCIFSLALAFVVPSINAQIPAPAPAPTSDGTTLDQGIACILMLLALVLTY 60

Query: 61 IIH 63
          IIH
Sbjct: 61 IIH 63


>Medtr8g099245.1 | arabinogalactan peptide-like protein | HC |
          chr8:41765566-41763694 | 20130731
          Length = 75

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 10 VMSILALAIAFVIP---SINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTYIIH 63
          VM+I+A  I F I    ++ AQ  APAP+PTSDG +VDQG+AY+        TYIIH
Sbjct: 12 VMAIIATLI-FTISFPAAVQAQTLAPAPSPTSDGSSVDQGIAYLLMLLALVLTYIIH 67


>Medtr3g090830.1 | arabinogalactan peptide-like protein | HC |
          chr3:41234931-41234172 | 20130731
          Length = 63

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 4  FRVQLFVMSILALAIAFVIPSINAQVPAPAPAPTSDGITVDQGVAYVXXXXXXXXTYIIH 63
          FRV  F    L L  A +I    +Q  APAPAPTSDG  +DQ +A V        TYIIH
Sbjct: 8  FRVVAF----LGLIYATLISVACSQSIAPAPAPTSDGTKIDQAIACVLMLVALVLTYIIH 63