Miyakogusa Predicted Gene

Lj2g3v0866680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0866680.1 Non Characterized Hit- tr|I3S499|I3S499_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.3,0,BRCT
domain,BRCT domain; no description,NULL; PTCB-BRCT,NULL; SUBFAMILY NOT
NAMED,NULL; DNA REPLICAT,NODE_73372_length_2005_cov_28.246384.path2.1
         (529 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g105400.2 | BRCT domain DNA repair protein | HC | chr3:486...   853   0.0  
Medtr3g105400.1 | BRCT domain DNA repair protein | HC | chr3:486...   844   0.0  
Medtr7g090980.2 | DNA topoisomerase 2-binding-like protein, puta...    65   1e-10
Medtr7g090980.1 | DNA topoisomerase 2-binding-like protein, puta...    65   1e-10
Medtr1g029630.2 | DNA topoisomerase 2-binding-like protein | HC ...    62   2e-09

>Medtr3g105400.2 | BRCT domain DNA repair protein | HC |
           chr3:48606997-48602243 | 20130731
          Length = 524

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/526 (79%), Positives = 451/526 (85%), Gaps = 11/526 (2%)

Query: 1   MGGDGIVEVVGGKGCSRLFSSSFRGLQPMEXXXXXXXXXXXXXXXPFAGLVICVTGLSKE 60
           MGG+G VEVV GKGCSRLFSSS R LQP++               PFAGLVICVTGLSKE
Sbjct: 1   MGGEGRVEVVSGKGCSRLFSSSIRNLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKE 60

Query: 61  TRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGAKNGLLVVTLGWFVDS 120
            RNQV EATERLGGQYS NLHPQCTHLVVQSFGGRK EHALKHG KNGL VVTLGWFVDS
Sbjct: 61  ARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGTKNGLFVVTLGWFVDS 120

Query: 121 VRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAENYCLPARIHETKHAHSVEEIQRF 180
           VRKNVRLTES YS+KSYGDN+M+L DF+LL  YT A N CLPARIHE KH H  EE +RF
Sbjct: 121 VRKNVRLTESLYSLKSYGDNDMKLDDFRLLPGYTNAGN-CLPARIHEIKHTHHAEEFRRF 179

Query: 181 SGRES------TLSGCSIYVDPGISSELCTKVVETASREGARLVEQWFVGCNVSHVVTEG 234
           SG ES      +LSGCSIYVDPGISSEL  KV ETASREGA L +QWFVGCNVSHVVTEG
Sbjct: 180 SGAESNRSLDSSLSGCSIYVDPGISSELQNKVAETASREGASLADQWFVGCNVSHVVTEG 239

Query: 235 TSIQRYLGYSSNLVTPLWILKTAKEKNVQRLVHMSADLAKQVGLMLEDINNGISGKEVIK 294
           TSIQRYLGYSSNL+TP+WILKTAKEK VQRLV MS DLA+QVGLML+DI    SGKE++K
Sbjct: 240 TSIQRYLGYSSNLITPVWILKTAKEKQVQRLVSMSVDLARQVGLMLDDI----SGKEIVK 295

Query: 295 QKVHGDLQGSKSEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRHITPNNILDSISWT 354
           QKVH DLQGSKSE+  KERQQIVNSAK GVR+RRGRRMQTCQTPIR ITPNN+LDSI W+
Sbjct: 296 QKVHDDLQGSKSEIGCKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWS 355

Query: 355 ISEPNSTASIYTDSFSVEDPSENCNSIFFESKGDGKDSEASFANSTRPLTESEKSELIFK 414
           ISE  STASIYTDSFS EDPSEN  SIFF++KGDGKDS+ASF++STRPLTESEKSELIFK
Sbjct: 356 ISEATSTASIYTDSFSAEDPSENHTSIFFDAKGDGKDSDASFSHSTRPLTESEKSELIFK 415

Query: 415 NHFLTILFPIDRFSEMGPSSRTFFSHSGFTCLQVLDHIQAFNQENMSSQEIEAAIHTDSR 474
           NHFLTILFP+DRFSE+GPS+RT FSH+GFTCLQVLDHI AF QENMSS EI+ AIHTDSR
Sbjct: 416 NHFLTILFPVDRFSEIGPSTRTLFSHNGFTCLQVLDHIHAFYQENMSSLEIDVAIHTDSR 475

Query: 475 HADRLRSVYSSKETAEHGCVMFKRIEFIGSRTSFEMLKRVAGDNNS 520
           HADRLRSVYSSKETAE G VM KRIEF+GSRTSFEMLKRV+GDNNS
Sbjct: 476 HADRLRSVYSSKETAERGYVMLKRIEFLGSRTSFEMLKRVSGDNNS 521


>Medtr3g105400.1 | BRCT domain DNA repair protein | HC |
           chr3:48606598-48602605 | 20130731
          Length = 523

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/526 (79%), Positives = 449/526 (85%), Gaps = 12/526 (2%)

Query: 1   MGGDGIVEVVGGKGCSRLFSSSFRGLQPMEXXXXXXXXXXXXXXXPFAGLVICVTGLSKE 60
           MGG+G VEVV GKGCSRLFSSS R LQP++               PFAGLVICVTGLSKE
Sbjct: 1   MGGEGRVEVVSGKGCSRLFSSSIRNLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKE 60

Query: 61  TRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGAKNGLLVVTLGWFVDS 120
            RNQV EATERLGGQYS NLHPQCTHLV  SFGGRK EHALKHG KNGL VVTLGWFVDS
Sbjct: 61  ARNQVMEATERLGGQYSPNLHPQCTHLV-HSFGGRKFEHALKHGTKNGLFVVTLGWFVDS 119

Query: 121 VRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAENYCLPARIHETKHAHSVEEIQRF 180
           VRKNVRLTES YS+KSYGDN+M+L DF+LL  YT A N CLPARIHE KH H  EE +RF
Sbjct: 120 VRKNVRLTESLYSLKSYGDNDMKLDDFRLLPGYTNAGN-CLPARIHEIKHTHHAEEFRRF 178

Query: 181 SGRES------TLSGCSIYVDPGISSELCTKVVETASREGARLVEQWFVGCNVSHVVTEG 234
           SG ES      +LSGCSIYVDPGISSEL  KV ETASREGA L +QWFVGCNVSHVVTEG
Sbjct: 179 SGAESNRSLDSSLSGCSIYVDPGISSELQNKVAETASREGASLADQWFVGCNVSHVVTEG 238

Query: 235 TSIQRYLGYSSNLVTPLWILKTAKEKNVQRLVHMSADLAKQVGLMLEDINNGISGKEVIK 294
           TSIQRYLGYSSNL+TP+WILKTAKEK VQRLV MS DLA+QVGLML+DI    SGKE++K
Sbjct: 239 TSIQRYLGYSSNLITPVWILKTAKEKQVQRLVSMSVDLARQVGLMLDDI----SGKEIVK 294

Query: 295 QKVHGDLQGSKSEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRHITPNNILDSISWT 354
           QKVH DLQGSKSE+  KERQQIVNSAK GVR+RRGRRMQTCQTPIR ITPNN+LDSI W+
Sbjct: 295 QKVHDDLQGSKSEIGCKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWS 354

Query: 355 ISEPNSTASIYTDSFSVEDPSENCNSIFFESKGDGKDSEASFANSTRPLTESEKSELIFK 414
           ISE  STASIYTDSFS EDPSEN  SIFF++KGDGKDS+ASF++STRPLTESEKSELIFK
Sbjct: 355 ISEATSTASIYTDSFSAEDPSENHTSIFFDAKGDGKDSDASFSHSTRPLTESEKSELIFK 414

Query: 415 NHFLTILFPIDRFSEMGPSSRTFFSHSGFTCLQVLDHIQAFNQENMSSQEIEAAIHTDSR 474
           NHFLTILFP+DRFSE+GPS+RT FSH+GFTCLQVLDHI AF QENMSS EI+ AIHTDSR
Sbjct: 415 NHFLTILFPVDRFSEIGPSTRTLFSHNGFTCLQVLDHIHAFYQENMSSLEIDVAIHTDSR 474

Query: 475 HADRLRSVYSSKETAEHGCVMFKRIEFIGSRTSFEMLKRVAGDNNS 520
           HADRLRSVYSSKETAE G VM KRIEF+GSRTSFEMLKRV+GDNNS
Sbjct: 475 HADRLRSVYSSKETAERGYVMLKRIEFLGSRTSFEMLKRVSGDNNS 520


>Medtr7g090980.2 | DNA topoisomerase 2-binding-like protein,
           putative | LC | chr7:35883366-35887589 | 20130731
          Length = 495

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 46  PFAGLVICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGA 105
           PF+GL ICVTG+  + R ++ +   + GG+YS+ L  +CTHL+  +  G K + A   G 
Sbjct: 4   PFSGLKICVTGIQADKRKEMEKLILQNGGKYSAELTKKCTHLISNAPEGDKHKMAKLWGH 63

Query: 106 KNGLLVVTLGWFVDSVRKNVRLTESHYSVKS 136
            N   +VT+ WF +S+ +   L E  Y V+S
Sbjct: 64  IN---IVTMKWFDESIAQRACLNEESYPVQS 91


>Medtr7g090980.1 | DNA topoisomerase 2-binding-like protein,
           putative | LC | chr7:35880817-35887589 | 20130731
          Length = 678

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 46  PFAGLVICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGA 105
           PF+GL ICVTG+  + R ++ +   + GG+YS+ L  +CTHL+  +  G K + A   G 
Sbjct: 187 PFSGLKICVTGIQADKRKEMEKLILQNGGKYSAELTKKCTHLISNAPEGDKHKMAKLWGH 246

Query: 106 KNGLLVVTLGWFVDSVRKNVRLTESHYSVKS 136
            N   +VT+ WF +S+ +   L E  Y V+S
Sbjct: 247 IN---IVTMKWFDESIAQRACLNEESYPVQS 274


>Medtr1g029630.2 | DNA topoisomerase 2-binding-like protein | HC |
           chr1:10213449-10202528 | 20130731
          Length = 1055

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 46  PFAGLVICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGA 105
           PF+GL ICVTG   + R ++ +   + GG+Y + L  +CTHL+     G K + A + G 
Sbjct: 185 PFSGLRICVTGFPADKRKEMEKIILQNGGKYFAELTKKCTHLISDIPEGDKYKVAKRWGH 244

Query: 106 KNGLLVVTLGWFVDSVRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAEN 158
              + +VT+ WF  SV +   L E  Y V+S G  + R V   L  ++++ ++
Sbjct: 245 ---IHIVTMKWFDQSVARRACLNEESYPVQS-GSLSSRKVTRDLTAQHSQEKD 293