Miyakogusa Predicted Gene
- Lj2g3v0856570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0856570.1 Non Characterized Hit- tr|I1KS42|I1KS42_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45963
PE,73.96,0,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; PORR,Plant organelle RNA
recognit,NODE_24135_length_1432_cov_17.444134.path2.1
(444 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 635 0.0
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 543 e-154
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 506 e-143
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 174 1e-43
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 167 2e-41
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 167 2e-41
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 167 2e-41
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 167 2e-41
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 166 3e-41
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 158 1e-38
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 158 1e-38
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 157 2e-38
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 157 2e-38
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 157 2e-38
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 157 2e-38
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 151 1e-36
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 149 8e-36
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 146 4e-35
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 146 4e-35
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 144 2e-34
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 143 3e-34
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 143 4e-34
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 140 2e-33
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 134 1e-31
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 130 2e-30
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 122 7e-28
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 110 2e-24
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 109 5e-24
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 108 1e-23
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 102 9e-22
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 79 8e-15
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/421 (73%), Positives = 361/421 (85%), Gaps = 6/421 (1%)
Query: 24 HHHSLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLE 83
+ H RWMTTSKRVQDRSKKKRVHELE ATEKWKI SKIVFL+ELL+QEPE+V P+R+L
Sbjct: 17 YSHFERWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLS 76
Query: 84 QYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADK 143
YRKQI+LPKPHR+SDFLRKTPKLFELY+DR G WCGLT++AE LMEEH+RV+EEN DK
Sbjct: 77 HYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDK 136
Query: 144 AAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFL 203
AAE+VTR+LMMS+DKR+ +DKIAHFRRDFGLPMDFRT WV++YP+LF++VK D VEFL
Sbjct: 137 AAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFL 196
Query: 204 ELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQI 263
ELVSWN WAITE+EKK G + HTPG+LSLPFPLKFP N+KRVH YY E+I
Sbjct: 197 ELVSWNSEWAITEIEKK--NKMILEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKI 254
Query: 264 QLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMP 323
++FQER+YLSPYADA+GLK GS EFDKRAVAVMHE+LSFT+EKRLVTDHLTHFRWE+VMP
Sbjct: 255 KMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMP 314
Query: 324 QKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLVGYRGRKK 383
QKLMRLLLKHCGIFYVSERGKRFSVFLTE Y+GSELIEK PL LW++K+LSLVGYRGRKK
Sbjct: 315 QKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLVGYRGRKK 374
Query: 384 KFETCSXXXXXXXXXXXGGLRLPESDSEDERLHVQLEQQGTMDFEDPLVEDNSEMDVREI 443
KFE S GLRL +SDS+ E L+V+LEQQ T++++DPL+ED+SEMDVR I
Sbjct: 375 KFEADS----DSDEEGGDGLRLLQSDSDVEDLNVELEQQDTLEYKDPLLEDDSEMDVRGI 430
Query: 444 N 444
+
Sbjct: 431 S 431
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 543 bits (1399), Expect = e-154, Method: Compositional matrix adjust.
Identities = 274/414 (66%), Positives = 323/414 (78%), Gaps = 41/414 (9%)
Query: 31 MTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQIN 90
MTTSKRVQDRSKKKRVHELE ATEKWKI SKIVFL+ELL+QEPE+V P+R+L YRKQI+
Sbjct: 1 MTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLSHYRKQIS 60
Query: 91 LPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADKAAEHVTR 150
LPKPHR+SDFLRKTPKLFELY+DR G WCGLT++AE LMEEH+RV+EEN DKAAE+VTR
Sbjct: 61 LPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDKAAEYVTR 120
Query: 151 VLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNP 210
+LMMS+DKR+ +DKIAHFRRDFGLPMDFRT WV++YP+LF++VK D VEFLELVSWN
Sbjct: 121 LLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFLELVSWNS 180
Query: 211 NWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERS 270
WAITE+EKK G + HTPG+LSLPFPLKFP N+KRVH YY E+I++FQER+
Sbjct: 181 EWAITEIEKK--NKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKIKMFQERT 238
Query: 271 YLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLL 330
YLSPYADA+GLK GS EFDKRAVAVMHE+LSFT+EK
Sbjct: 239 YLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEK------------------------ 274
Query: 331 LKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLVGYRGRKKKFETCSX 390
RGKRFSVFLTE Y+GSELIEK PL LW++K+LSLVGYRGRKKKFE S
Sbjct: 275 -----------RGKRFSVFLTEAYEGSELIEKSPLFLWREKLLSLVGYRGRKKKFEADS- 322
Query: 391 XXXXXXXXXXGGLRLPESDSEDERLHVQLEQQGTMDFEDPLVEDNSEMDVREIN 444
GLRL +SDS++E L+V+LEQQ T++++DPL+ED+SEMDVR I+
Sbjct: 323 ---DSDEEGGDGLRLLQSDSDEEDLNVELEQQDTLEYKDPLLEDDSEMDVRGIS 373
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/314 (76%), Positives = 276/314 (87%), Gaps = 2/314 (0%)
Query: 24 HHHSLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLE 83
+ H RWMTTSKRVQDRSKKKRVHELE ATEKWKI SKIVFL+ELL+QEPE+V P+R+L
Sbjct: 24 YSHCERWMTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRSLS 83
Query: 84 QYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADK 143
YRKQI+LPKPHR+SDFLRKTPKLFELY+DR G WCGLT++AE LMEEH+RV+EEN DK
Sbjct: 84 HYRKQISLPKPHRISDFLRKTPKLFELYKDRNGVLWCGLTQKAEVLMEEHKRVIEENEDK 143
Query: 144 AAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFL 203
AAE+VTR+LMMS+DKR+ +DKIAHFRRDFGLPMDFRT WV++YP+LF++VK D VEFL
Sbjct: 144 AAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLDDVEFL 203
Query: 204 ELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQI 263
ELVSWN WAITE+EKK G + HTPG+LSLPFPLKFP N+KRVH YY E+I
Sbjct: 204 ELVSWNSEWAITEIEKK--NKMIMEGVTETEHTPGLLSLPFPLKFPANFKRVHSYYGEKI 261
Query: 264 QLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMP 323
++FQER+YLSPYADA+GLK GS EFDKRAVAVMHE+LSFT+EKRLVTDHLTHFRWE+VMP
Sbjct: 262 KMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHLTHFRWELVMP 321
Query: 324 QKLMRLLLKHCGIF 337
QKLMRLLLKHCGIF
Sbjct: 322 QKLMRLLLKHCGIF 335
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 184/340 (54%), Gaps = 14/340 (4%)
Query: 42 KKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFL 101
K+++ + +K K + ++ + ++L +P V ++ L +YR+++ L K ++ L
Sbjct: 85 KRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIVIL 144
Query: 102 RKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLP 161
R+ P +FE+ +D + +T AE L E RV E D + ++LMM L+KR+
Sbjct: 145 RRFPGVFEIVEDGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRIL 204
Query: 162 VDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKV 221
++KI H D GLP +FR ++YPE FK+V++ + LEL W+P+ A++ E
Sbjct: 205 LEKIGHLANDLGLPREFRDTICHRYPEFFKVVQT--ERGPALELTHWDPHLAVSAAELSA 262
Query: 222 AGNENESGESAN---SHTPGV--LSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYA 276
N E N P + LP L + R +I F++ Y+SPY+
Sbjct: 263 EENRIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMR-------KIMQFRDIPYISPYS 315
Query: 277 DARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGI 336
D + + E +K A V+HE+LS T+EKR + D+ THFR E Q+L +L++H +
Sbjct: 316 DFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDM 375
Query: 337 FYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLV 376
FY+S +G R SVFL E Y S+L++K L+L K+K+ SLV
Sbjct: 376 FYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLV 415
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 200/377 (53%), Gaps = 28/377 (7%)
Query: 19 SNRHWHHHSLRWMTTSKRV--QDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMV 76
+N + H H+ R +++ K V +D+S L++A E+ K + +++ + EP V
Sbjct: 17 NNLNIHVHT-RLISSLKVVWRKDQS-------LDQAIEQDKRFKQCARVVKEVLNEPGQV 68
Query: 77 TPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDR-----KGTWWCGLTERAENLME 131
P+R LE+ R+++ L ++ FL + P LF++Y DR + + +++ ++
Sbjct: 69 IPLRYLEKRRQRMRLKV--KIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQ 126
Query: 132 EHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFK 191
E +R+ +EN + ++LMMS DK + DK+ H +R+FG P DF V +YPE F+
Sbjct: 127 EEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFR 186
Query: 192 LVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
L +G FLELV+WNP +A + +E++ E ES + P F +K P
Sbjct: 187 LTGLPGEGKSFLELVNWNPEFAKSVIERRA---EEESRATGIRVRPS-----FNVKLPPG 238
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
+ + + +E I+ + E Y+SPY D L+ S+E +KR+V V HE+LS ++ KR+
Sbjct: 239 FV-LKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVP 297
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L F E +H GIFY+S +G + L E YDG +LI+ PL+ KD+
Sbjct: 298 ILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDR 357
Query: 372 VLSLV--GYRGRKKKFE 386
L+ G+R R ++ +
Sbjct: 358 FAELLKEGWRLRAEQLK 374
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 200/377 (53%), Gaps = 28/377 (7%)
Query: 19 SNRHWHHHSLRWMTTSKRV--QDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMV 76
+N + H H+ R +++ K V +D+S L++A E+ K + +++ + EP V
Sbjct: 17 NNLNIHVHT-RLISSLKVVWRKDQS-------LDQAIEQDKRFKQCARVVKEVLNEPGQV 68
Query: 77 TPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDR-----KGTWWCGLTERAENLME 131
P+R LE+ R+++ L ++ FL + P LF++Y DR + + +++ ++
Sbjct: 69 IPLRYLEKRRQRMRLKV--KIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQ 126
Query: 132 EHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFK 191
E +R+ +EN + ++LMMS DK + DK+ H +R+FG P DF V +YPE F+
Sbjct: 127 EEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFR 186
Query: 192 LVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
L +G FLELV+WNP +A + +E++ E ES + P F +K P
Sbjct: 187 LTGLPGEGKSFLELVNWNPEFAKSVIERRA---EEESRATGIRVRPS-----FNVKLPPG 238
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
+ + + +E I+ + E Y+SPY D L+ S+E +KR+V V HE+LS ++ KR+
Sbjct: 239 FV-LKKEMREWIRDWMELDYVSPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVP 297
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L F E +H GIFY+S +G + L E YDG +LI+ PL+ KD+
Sbjct: 298 ILGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDR 357
Query: 372 VLSLV--GYRGRKKKFE 386
L+ G+R R ++ +
Sbjct: 358 FAELLKEGWRLRAEQLK 374
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 182/345 (52%), Gaps = 18/345 (5%)
Query: 49 LEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLF 108
L++A E+ K + +++ + EP V P+R LE+ R+++ L ++ FL + P LF
Sbjct: 41 LDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKV--KIDTFLNQNPFLF 98
Query: 109 ELYQDR-----KGTWWCGLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVD 163
++Y DR K + +++ +EE +R+ +EN + ++LMMS DK + D
Sbjct: 99 DVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVVSAD 158
Query: 164 KIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAG 223
K+ H +R+FG P DF V +YPE F+L +G FLELV+WNP +A + +EK+
Sbjct: 159 KLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKRA-- 216
Query: 224 NENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKA 283
E ES + P F +K P + + + +E I+ + E Y+SPY D +
Sbjct: 217 -EEESSATGIRVRPS-----FNVKLPPGFV-LKKEMREWIRDWMELDYVSPYEDVSHFEQ 269
Query: 284 GSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERG 343
S+E +KR+V V HE+LS ++ KR+ L F E +H GIFY+S +G
Sbjct: 270 SSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLKG 329
Query: 344 KRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLV--GYRGRKKKFE 386
+ L E Y+G +LI PL+ KD+ L+ G+R R ++ +
Sbjct: 330 GIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWRLRAEQLK 374
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 182/345 (52%), Gaps = 18/345 (5%)
Query: 49 LEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLF 108
L++A E+ K + +++ + EP V P+R LE+ R+++ L ++ FL + P LF
Sbjct: 41 LDQAIEQDKRFKQCFRVVKEVLNEPGQVIPLRYLEKRRQRMRLKV--KIDTFLNQNPFLF 98
Query: 109 ELYQDR-----KGTWWCGLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVD 163
++Y DR K + +++ +EE +R+ +EN + ++LMMS DK + D
Sbjct: 99 DVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVVSAD 158
Query: 164 KIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAG 223
K+ H +R+FG P DF V +YPE F+L +G FLELV+WNP +A + +EK+
Sbjct: 159 KLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKRA-- 216
Query: 224 NENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKA 283
E ES + P F +K P + + + +E I+ + E Y+SPY D +
Sbjct: 217 -EEESSATGIRVRPS-----FNVKLPPGFV-LKKEMREWIRDWMELDYVSPYEDVSHFEQ 269
Query: 284 GSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERG 343
S+E +KR+V V HE+LS ++ KR+ L F E +H GIFY+S +G
Sbjct: 270 SSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLKG 329
Query: 344 KRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLV--GYRGRKKKFE 386
+ L E Y+G +LI PL+ KD+ L+ G+R R ++ +
Sbjct: 330 GIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWRLRAEQLK 374
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 187/380 (49%), Gaps = 24/380 (6%)
Query: 24 HHH---------SLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPE 74
HHH S+R + S + + ++ R H + E K K++ L+ EP
Sbjct: 20 HHHQYNPNPNFSSIREFSQSTSIPKKQQRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPN 79
Query: 75 MVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQD-RKGTWWCGLTERAENLMEEH 133
PI LE +I + H F+ K +FE+++ + +C LT +A +E+
Sbjct: 80 QSIPISRLETQAHRIGFTR-HEAIAFILKFLHVFEIFEHPVQRILFCRLTRKAILQIEQE 138
Query: 134 ERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLV 193
+ + ++A + +++MMS RL ++ + R GLP DF V +YPE F+LV
Sbjct: 139 RLALADQVERAVTRLRKMIMMSNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLV 198
Query: 194 KSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYK 253
+ + +++ELV ++P A +E E G A + F + FP +K
Sbjct: 199 DAKETRNKYIELVEFDPKLAKCAIEDARERVYRERGSEAED-----IRFSFLIDFPPGFK 253
Query: 254 RVHRYYKEQIQLFQERSYLSPYADARGLKAGS----KEFDKRAVAVMHEMLSFTIEKRLV 309
+ +Y++ + +Q Y SPY D G S K +KRAVA +HE+LS T+EK++
Sbjct: 254 -ISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKIT 312
Query: 310 TDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSER---GKRFSVFLTEGYDGSELIEKCPLV 366
+ + HFR M +P+KL LL+H GIFYVS R GK +VFL E Y EL+E L
Sbjct: 313 LERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYSKGELVEPNDLY 372
Query: 367 LWKDKVLSLVGYRGRKKKFE 386
L + K++ LV RK + +
Sbjct: 373 LARRKLVELVLLSPRKARVD 392
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 184/352 (52%), Gaps = 26/352 (7%)
Query: 21 RHWHHHSLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIR 80
RH + + T+SKR K+ +LE A + K + ++ + P PI+
Sbjct: 3 RHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQ 62
Query: 81 TLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEEN 140
TL++ K ++L + +++ K P F+ +QD LT+R L+ E + + +
Sbjct: 63 TLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHEEQSLKDSL 115
Query: 141 ADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL-VKSLDDG 199
+ ++LM+SL+ L V KI + G P D+ V +YP+LF++ +S
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 200 VEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYY 259
+EL+ WNP++A++E+E N G N F P ++ + +
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKN----GVEVN----------FSCCLPSSWVKSLEKF 221
Query: 260 KEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWE 319
+E F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++ L HF+ E
Sbjct: 222 RE----FELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKRE 277
Query: 320 MVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
+P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 278 FFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 184/352 (52%), Gaps = 26/352 (7%)
Query: 21 RHWHHHSLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIR 80
RH + + T+SKR K+ +LE A + K + ++ + P PI+
Sbjct: 3 RHQTNIIILLRTSSKRHYCLWSSKKDPDLESALSRNKRWIINNQIKNIILRYPNNQIPIQ 62
Query: 81 TLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEEN 140
TL++ K ++L + +++ K P F+ +QD LT+R L+ E + + +
Sbjct: 63 TLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHEEQSLKDSL 115
Query: 141 ADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL-VKSLDDG 199
+ ++LM+SL+ L V KI + G P D+ V +YP+LF++ +S
Sbjct: 116 ESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRS 175
Query: 200 VEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYY 259
+EL+ WNP++A++E+E N G N F P ++ + +
Sbjct: 176 SMVVELMKWNPDFAVSEVEALAMKN----GVEVN----------FSCCLPSSWVKSLEKF 221
Query: 260 KEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWE 319
+E F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++ L HF+ E
Sbjct: 222 RE----FELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKRE 277
Query: 320 MVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
+P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 278 FFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 26/300 (8%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI+TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHE 107
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + G P D+ V +YP+LF++
Sbjct: 108 EQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E S + V SL
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSL--------- 218
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
E+ F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++
Sbjct: 219 ---------EKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ E +P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 26/300 (8%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI+TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHE 107
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + G P D+ V +YP+LF++
Sbjct: 108 EQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E S + V SL
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSL--------- 218
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
E+ F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++
Sbjct: 219 ---------EKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ E +P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 26/300 (8%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI+TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHE 107
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + G P D+ V +YP+LF++
Sbjct: 108 EQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E S + V SL
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSL--------- 218
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
E+ F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++
Sbjct: 219 ---------EKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ E +P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 161/300 (53%), Gaps = 26/300 (8%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI+TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 55 PNNQIPIQTLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMELVHE 107
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + G P D+ V +YP+LF++
Sbjct: 108 EQSLKDSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRI 167
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E S + V SL
Sbjct: 168 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSL--------- 218
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
E+ F+ Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++
Sbjct: 219 ---------EKFHEFELVPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIM 269
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ E +P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 270 KLGHFKREFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 329
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 160/300 (53%), Gaps = 26/300 (8%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 57 PNNQIPILTLQKKFKTLDLQG--KALNWISKYPSCFQFHQDH-----VLLTKRMMKLVHE 109
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + FGLP D+ V +Y +LF++
Sbjct: 110 EQSLKDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRI 169
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E S + V SL
Sbjct: 170 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVEVNFSCCLPSSWVKSL--------- 220
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
E+ + F+ Y+SPY+D R L GSKE +KR + ++HE+LS T+ K++
Sbjct: 221 ---------EKFREFELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIM 271
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ E +P K+ LLLKH GIFYVS + + ++V L EGY GS+L++K PLV K+K
Sbjct: 272 KLGHFKREFFLPDKVNVLLLKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVKEK 331
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 153/283 (54%), Gaps = 24/283 (8%)
Query: 90 NLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADKAAEHVT 149
N PK +++ K P F+ +QD LT+R L+ E + + + +
Sbjct: 27 NRPKLRISLNWISKYPSCFQFHQDH-----VLLTKRMMELVHEEQSLKDSLESVFVPRLA 81
Query: 150 RVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL-VKSLDDGVEFLELVSW 208
++LM SL+ L V KI + G P D+ V +YP+LF++ +S +EL+ W
Sbjct: 82 KLLMFSLNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKW 141
Query: 209 NPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQE 268
NP+++++E VA ++G N F P ++ + ++E F+
Sbjct: 142 NPDFSVSE----VAALAMKNGVEVN----------FSYCLPSSWVKSLEKFRE----FEL 183
Query: 269 RSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMR 328
Y+SPY+D RGL GSKE +KR V ++HE+LS T+ K++ L HF+ E +P K+
Sbjct: 184 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 243
Query: 329 LLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
LLLKH GIFYVS + + ++V L EGY GS+L++K PLV+ K+K
Sbjct: 244 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEK 286
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 172/317 (54%), Gaps = 13/317 (4%)
Query: 64 FLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLF-ELYQ-DRKGTWW-C 120
L+ ++ E PI L ++R Q+ LP +++ F+R+ P +F E Y D G+ C
Sbjct: 58 ILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPC 117
Query: 121 -GLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFR 179
GL+ A + E ++ EN+ + + + ++LM++ D LP+ I + D GLP D++
Sbjct: 118 FGLSSEAMKIHREEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQ 177
Query: 180 TRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGV 239
+V +PE F V+ L D L+L+ W+ A++ELEK A + + + N
Sbjct: 178 DSFVMNHPEKFSFVR-LPDVRVGLKLLFWDDKLAVSELEKN-ASLQQQVEDIKNG----- 230
Query: 240 LSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEM 299
+L FP+ F + + R E ++ +Q+ Y SPYADA L + +KR V V HE+
Sbjct: 231 -TLAFPVSFTRGFG-MKRKSMEWLREWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHEL 288
Query: 300 LSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSEL 359
L T+ K+ ++++ R + +PQK + +H GIFY+S++ +V L E Y+G EL
Sbjct: 289 LHLTLHKQTERKNVSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGEL 348
Query: 360 IEKCPLVLWKDKVLSLV 376
++K PLV ++++ +L+
Sbjct: 349 VQKHPLVKIREELANLL 365
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 172/317 (54%), Gaps = 13/317 (4%)
Query: 64 FLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLF-ELYQ-DRKGTWW-C 120
L+ ++ E PI L ++R Q+ LP +++ F+R+ P +F E Y D G+ C
Sbjct: 58 ILVSVIYSSSEDYVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPC 117
Query: 121 -GLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFR 179
GL+ A + E ++ EN+ + + + ++LM++ D LP+ I + D GLP D++
Sbjct: 118 FGLSSEAMKIHREEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQ 177
Query: 180 TRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGV 239
+V +PE F V+ L D L+L+ W+ A++ELEK A + + + N
Sbjct: 178 DSFVMNHPEKFSFVR-LPDVRVGLKLLFWDDKLAVSELEKN-ASLQQQVEDIKNG----- 230
Query: 240 LSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEM 299
+L FP+ F + + R E ++ +Q+ Y SPYADA L + +KR V V HE+
Sbjct: 231 -TLAFPVSFTRGFG-MKRKSMEWLREWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHEL 288
Query: 300 LSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSEL 359
L T+ K+ ++++ R + +PQK + +H GIFY+S++ +V L E Y+G EL
Sbjct: 289 LHLTLHKQTERKNVSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGEL 348
Query: 360 IEKCPLVLWKDKVLSLV 376
++K PLV ++++ +L+
Sbjct: 349 VQKHPLVKIREELANLL 365
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 162/326 (49%), Gaps = 16/326 (4%)
Query: 64 FLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLF-ELYQDRKGTWWC-G 121
L + +K+ +T ++K + L P V F+R+ P LF E R + C
Sbjct: 53 LLKDAIKRSSTSFLTAKTFSDWQKLLGLTVP--VLRFIRRYPTLFHEFPHPRWNSLPCFR 110
Query: 122 LTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTR 181
LT+ A+ L + + + + + E ++VLMM + +P+ + + D GLP F
Sbjct: 111 LTDTAQLLDSQEQSIYAVHENDIVERFSKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKT 170
Query: 182 WVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLS 241
+ +YP+ F+ VK+ +GV + LV W +A++ L+K + + G +
Sbjct: 171 LIPKYPDKFQFVKA-GNGVSAIRLVDWCDEFAVSALQKSNQCESENASDQYRDFKRGKTA 229
Query: 242 LPFPLKFPENY---KRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHE 298
L FP++FP Y K+V + E FQ+ Y+SPYAD+ + S +KR V V+HE
Sbjct: 230 LVFPMRFPRGYGGQKKVRFWMDE----FQKLPYISPYADSSKIDPKSDLMEKRVVGVLHE 285
Query: 299 MLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSE 358
LS + K+ ++L R E+ +P K R+ ++ GIFY+S + K +V L EGY +
Sbjct: 286 FLSLCLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGK 345
Query: 359 LIEKCPLVLWKDKVLSLVG----YRG 380
L++ PL +DK ++ YRG
Sbjct: 346 LVDPHPLARHRDKFYHVMRTGLLYRG 371
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 155/295 (52%), Gaps = 14/295 (4%)
Query: 97 VSDFLRKTPKLFELY-QDRKGTWWCGLTERAENLMEEHERVVEENADKAAEHVTRVLMMS 155
V+ FL+K P +F L+ + C +T++ + L+ E VV ++ + + V ++LMMS
Sbjct: 99 VTSFLQKYPHVFYLFVHPFRRNMCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMS 158
Query: 156 LDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAIT 215
++ L + + RR+ GLP DFR + +Y + F+LV +E + LV W+ +
Sbjct: 159 VNGTLHLHALRLIRRELGLPCDFRESILGRYSDEFRLV-----DLEIVALVGWDDELGMA 213
Query: 216 ELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPY 275
+E+ E S FP+ FP +K + R ++E+++ +Q SY PY
Sbjct: 214 RVEEWREREYREKWLSEFET-----KFAFPINFPTGFK-IERGFREKLKGWQRLSYTKPY 267
Query: 276 ADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCG 335
G + ++KRAVAV+HE+LS T+EK + D L HFR + + + LLL+H G
Sbjct: 268 ERKNVKCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFDIEVNVRELLLRHPG 327
Query: 336 IFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLV--GYRGRKKKFETC 388
IFY+S +G +VFL E Y+ LIE P+ + +L LV G R K+ +C
Sbjct: 328 IFYISTKGNAQTVFLREAYEKGGLIEPNPVYEVRRNMLELVLLGRRKTKQLLASC 382
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 164/330 (49%), Gaps = 15/330 (4%)
Query: 65 LMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDR-KGTWWCGLT 123
+ EL+ E PI LE +I + H S F+ K P +FE+++ + +C LT
Sbjct: 35 ISELILSELNQSIPIPRLETLAHRIGFTR-HEASAFILKFPYVFEIFEHLVQRILFCRLT 93
Query: 124 ERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWV 183
+ +E+ + + + + +++MMS RL ++ + R GL DF V
Sbjct: 94 RKTILQIEQERLALADQVGRTVTCLRKMIMMSNGLRLRLEHVRIARSALGLRDDFEYLVV 153
Query: 184 NQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLP 243
+YPE F+LV + + +++ELV ++P A +E E G A +
Sbjct: 154 LRYPEFFRLVDAKETRNKYIELVEFDPKLATCAIEDARERVYRERGSEAED-----IRFS 208
Query: 244 FPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKAGS----KEFDKRAVAVMHEM 299
F + F +K + +Y++ + +Q Y SPY D G S K +KRAVA +HE+
Sbjct: 209 FLIDFLPGFK-ISKYFRIAMWKWQSLPYWSPYEDVWGYDLRSPEAQKRMEKRAVATIHEL 267
Query: 300 LSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSER---GKRFSVFLTEGYDG 356
LS T+EK++ + + HF+ M +P+KL LL+H GIFYVS R GK +VFL E Y
Sbjct: 268 LSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIFYVSTRGNHGKLHTVFLREAYRK 327
Query: 357 SELIEKCPLVLWKDKVLSLVGYRGRKKKFE 386
EL+E L L + K+ +V RK + +
Sbjct: 328 GELVEPNDLYLARRKLAEVVLLSPRKARVD 357
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 168/338 (49%), Gaps = 17/338 (5%)
Query: 40 RSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSD 99
+++ RV E+ ++ ++ + L +PE V + + +++ P+ +++
Sbjct: 54 QTEPNRVTAFEQIVKRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAK 113
Query: 100 FLRKTPKLFELYQDRKGTWWCGLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKR 159
+++ P LF Y+ G W G T+ E L+ E + ++E E V ++LMMS R
Sbjct: 114 SIQQHPPLFLTYRHTDGKMWFGFTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHR 173
Query: 160 LPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLV----KSLDDGVEFLELVSWNPNWAIT 215
+ + KI H R FG+P DFR R V +YP F++V K V LELV+W+P A++
Sbjct: 174 ISLAKIHHVRNLFGIPDDFRDR-VEKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVS 232
Query: 216 ELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPY 275
+EK+ NE+++ FP+K ++ + + + ++ L +SPY
Sbjct: 233 AIEKEFMVNEDDAKR----------KFTFPVKHGKDLE-LGIEDERKMNLLNALPLVSPY 281
Query: 276 ADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCG 335
+D + E +K V ++HE LS T+EKR HL F+ E + + +L+K
Sbjct: 282 SDGAKFDVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPR 341
Query: 336 IFYVSERGKRFSVFLTEGYD-GSELIEKCPLVLWKDKV 372
FY++ + VFL EGYD LI K P V++ +KV
Sbjct: 342 AFYLAGTEMNWVVFLKEGYDRNGVLIHKDPQVVFNEKV 379
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 165/332 (49%), Gaps = 39/332 (11%)
Query: 65 LMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELY----------QDR 114
L LL +P+ PI+ L + R ++L KP + + + P +FEL+ +
Sbjct: 78 LKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMIHRYPSIFELFTIPWPPTPLNATK 137
Query: 115 KGTWWCG-LTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFG 173
C LT A L E + + A + ++LM+S +RL + K+ H D G
Sbjct: 138 LYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKLLMLSSHRRLLLAKLVHLAPDLG 197
Query: 174 LPMDFRTRWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESAN 233
LP +FR+R N +P+ FK+V + LELVSW+ N A K + E+ S +
Sbjct: 198 LPPNFRSRLCNDHPDKFKIVDT--SYGRALELVSWDTNLA-----KPLPPRESHSLD--- 247
Query: 234 SHTPGVLSLPFPLKFPE-------NYKRVHRYYKEQIQLFQERSYLSPYAD-ARGLKAGS 285
L + PLKF + N KR HR Y + F+E + PY + A S
Sbjct: 248 ------LIVDRPLKFKQLRLRKGLNLKRPHRDY---LLKFEEMPEVCPYNNPAESSTKES 298
Query: 286 KEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKR 345
E +KR AV+ E+L TIEKR + DHLTHFR E +P KL ++++H +FY S +G+R
Sbjct: 299 IEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIVRHPELFYTSLKGQR 358
Query: 346 FSVFLTEGYD-GSELIEKCPLVLWKDKVLSLV 376
SVFL E +D L+EK ++ +DK + L
Sbjct: 359 DSVFLVERFDEKGNLLEKDEVLALQDKWMDLA 390
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 184/359 (51%), Gaps = 27/359 (7%)
Query: 22 HWHHHSLRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRT 81
H HH + T V+DR L+ A E+ K + ++ L+ L+ EP PI
Sbjct: 16 HRHHLRTLFSGTFTLVRDRG-------LDHAVEREKNLKPLLTLLSLINNEPTKSLPISI 68
Query: 82 LEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTW--WCGLTERAENLMEEHERVVEE 139
++Q R +NLP R +F+RK P +FE + + T+ LT +A +L + + +V
Sbjct: 69 IKQSR-SLNLP--FRPIEFIRKYPSVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVAS 125
Query: 140 NADK--AAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLD 197
+ K A V ++LM++ ++P+ + + D GLP D+ + ++P+ F++V +
Sbjct: 126 DVFKKDVAVRVLKLLMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDN 185
Query: 198 DGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHR 257
+ V LELV W+ +++ LEKK G+ L FP++F ++ + +
Sbjct: 186 NAV--LELVCWSKKHSVSFLEKKYGDKAKGQGKE----------LGFPVQFSTGFE-MDK 232
Query: 258 YYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFR 317
Y++ ++ + Y+SPY + L S+E DK V V+HE+L+ + K+ D++
Sbjct: 233 KYEKWVKEWNGLRYVSPYENGVNLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIG 292
Query: 318 WEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLV 376
+ + + R++L+H GIFYVS + + ++V L +GY L+E P + ++ + + L+
Sbjct: 293 EWLGLASRFKRVILQHPGIFYVSSKNRMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLM 351
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 177/363 (48%), Gaps = 19/363 (5%)
Query: 28 LRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPE-MVTPIRTLEQYR 86
+R TTS +Q + + R E+ +K+K + K++ + +L+ P+ + L
Sbjct: 39 VRSKTTS--IQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLS 96
Query: 87 KQINLPKPHRVSDFLRKTPKLFELY-QDRKGTWWCGLTERAENLMEEHERVVEENADKAA 145
++++L + + FLRK P +F +Y + K +C LT+ A ++ + + +
Sbjct: 97 QRLHLNRG--ATAFLRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVV 154
Query: 146 EHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLEL 205
E + R+L MS K +P+ + R+ GLP DF + +F+L + + L+L
Sbjct: 155 ERLVRILSMSASKTVPLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKL 214
Query: 206 VSWNPNW---AITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQ 262
V P+ A E + V ++ES S NS + F ++P R+ + ++
Sbjct: 215 VGDVPSSGFRAAVEDWRVVECCKDES--SVNSME---MRYSFKQRYPPGM-RLSKNFRAN 268
Query: 263 IQLFQERSYLSPYA----DARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRW 318
++ +Q Y+ PY + KAG +KRAV+++HE +S T+EK + + ++ FR
Sbjct: 269 VKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRK 328
Query: 319 EMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLVGY 378
+ + L L H GIFY+S +GKR +VFL E Y+ LI P+ + ++L LV
Sbjct: 329 WFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVAL 388
Query: 379 RGR 381
R
Sbjct: 389 ERR 391
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 51/300 (17%)
Query: 73 PEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTWWCGLTERAENLMEE 132
P PI TL++ K ++L + +++ K P F+ +QD LT+R L+ E
Sbjct: 57 PNNQIPILTLQKKFKTLDLQ--GKALNWISKYPSCFQFHQDH-----VLLTKRMMKLVHE 109
Query: 133 HERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKL 192
+ + + + ++LM+SL+ L V KI + FGLP D+ V +Y +LF++
Sbjct: 110 EQSLKDSLESVFVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRI 169
Query: 193 -VKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPEN 251
+S +EL+ WNP++A++E+E N E + F P +
Sbjct: 170 RNESGRRSSMVVELMKWNPDFAVSEVEALAMKNGVE--------------VNFSCCLPSS 215
Query: 252 YKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTD 311
+ + ++E F+ Y+SPY+D R L GSKE +KR + ++HE+LS T+ K++
Sbjct: 216 WVKSLEKFRE----FELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIM 271
Query: 312 HLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDK 371
L HF+ G+F+ + EGY GS+L++K PLV K+K
Sbjct: 272 KLGHFK----------------KGVFF---------CLIREGYVGSQLVDKNPLVAVKEK 306
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 148/316 (46%), Gaps = 13/316 (4%)
Query: 62 IVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHRVSDFLRKTPKLFELYQDRKGTW-WC 120
++ L + Q+P PI ++ + Q+++P +V+ FLR+ P +FE + K W
Sbjct: 72 VIALKNCIAQDPNGCIPISSVSKRGLQLDVPM--KVARFLRQYPSIFEEFTGPKYNHPWF 129
Query: 121 GLTERAENLMEEHERVVEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRT 180
LT A + + +RV EE+ ++ + ++++M+ + LP+ I + GLP DF
Sbjct: 130 RLTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHDFLQ 189
Query: 181 RWVNQYPELFKLVKSLDDGVEFLELVSWNPNWAITELEKKVAGNENESGESANSHTPGVL 240
+ F+ V+ ++DG++ L + S +++ E N + G + +
Sbjct: 190 HHEQNLDDSFRFVE-MEDGLKGLAIESRERVYSVME------ENAMKKGMYYDGSQTEAI 242
Query: 241 SLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVAVMHEML 300
PF FP R+ + + FQ+ Y+SPY D L S +KR + V+HE+L
Sbjct: 243 EFPF---FPSKALRMKTKIENWLHEFQKLPYISPYDDFSNLDPNSDIAEKRLIGVLHELL 299
Query: 301 SFTIEKRLVTDHLTHFRWEMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELI 360
S I+ L + PQK+ R +H +FY+S R K +V L E Y I
Sbjct: 300 SLFIDHSAERRKLLCLKKYFGFPQKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNELAI 359
Query: 361 EKCPLVLWKDKVLSLV 376
E PL+ + + + L+
Sbjct: 360 ENHPLLSVRKRYIKLM 375
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 23/340 (6%)
Query: 37 VQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPEMVTPIRTLEQYRKQINLPKPHR 96
V R K R L+ A K K + ++ L + P + + +NLP
Sbjct: 18 VNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPM--I 75
Query: 97 VSDFLRKTPKLFELYQDRKGTW-WCGLTERAENLMEEHERV--VEENADKAAEHVTRVLM 153
+ K +F +Q G LT +A L +E V N + AA+ + R+LM
Sbjct: 76 TIKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLARLLM 135
Query: 154 MSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLD--DGVEFL--ELVSWN 209
++ RLP+ I + D GLP D+ T + YP+ F + D G E L ELVSW
Sbjct: 136 LAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELVSWR 195
Query: 210 PNWAITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENY---KRVHRYYKEQIQLF 266
+++ELEK+V G ++ + + + FP+ P+++ KRV K ++ +
Sbjct: 196 KELSVSELEKRVMGFNYDADKRRHD-------IQFPMFLPKSFALEKRV----KTWVEGW 244
Query: 267 QERSYLSPYADARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRWEMVMPQKL 326
Q Y+SPY +A L + S + +K VA++HE+LS + K+ +++L + + + +
Sbjct: 245 QTLPYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRF 304
Query: 327 MRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLV 366
+ L+ H GIFY+S + + + L E Y L++ P++
Sbjct: 305 KKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVM 344
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 168/363 (46%), Gaps = 43/363 (11%)
Query: 28 LRWMTTSKRVQDRSKKKRVHELEEATEKWKIVSKIVFLMELLKQEPE-MVTPIRTLEQYR 86
+R TTS +Q + + R E+ +K+K + K++ + +L+ P+ + L
Sbjct: 39 VRSKTTS--IQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLS 96
Query: 87 KQINLPKPHRVSDFLRKTPKLFELY-QDRKGTWWCGLTERAENLMEEHERVVEENADKAA 145
++++L + + FLRK P +F +Y + K +C LT+ A ++ + + +
Sbjct: 97 QRLHLNRG--ATAFLRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVV 154
Query: 146 EHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFRTRWVNQYPELFKLVKSLDDGVEFLEL 205
E + R+L MS K +P+ + FKL + + L+L
Sbjct: 155 ERLVRILSMSASKTVPLRAV------------------------FKLCDADEQNTHLLKL 190
Query: 206 VSWNPNW---AITELEKKVAGNENESGESANSHTPGVLSLPFPLKFPENYKRVHRYYKEQ 262
V P+ A E + V ++ES S NS + F ++P R+ + ++
Sbjct: 191 VGDVPSSGFRAAVEDWRVVECCKDES--SVNSME---MRYSFKQRYPPGM-RLSKNFRAN 244
Query: 263 IQLFQERSYLSPYA----DARGLKAGSKEFDKRAVAVMHEMLSFTIEKRLVTDHLTHFRW 318
++ +Q Y+ PY + KAG +KRAV+++HE +S T+EK + + ++ FR
Sbjct: 245 VKEWQSLPYMGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRK 304
Query: 319 EMVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEGYDGSELIEKCPLVLWKDKVLSLVGY 378
+ + L L H GIFY+S +GKR +VFL E Y+ LI P+ + ++L LV
Sbjct: 305 WFGIDFNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVAL 364
Query: 379 RGR 381
R
Sbjct: 365 ERR 367
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Query: 122 LTERAENLMEEHERV--VEENADKAAEHVTRVLMMSLDKRLPVDKIAHFRRDFGLPMDFR 179
LT +A L +E V N + AA+ ++R+LM++ R P+ I + D GLP D+
Sbjct: 56 LTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIEKLKWDMGLPHDYV 115
Query: 180 TRWVNQYPELFKLVKSLD--DGVEF--LELVSWNPNWAITELEKKVAG-NENESGESANS 234
T + YP+ F + D G E LE V W +++ELEK+V G N +
Sbjct: 116 TTLLAHYPDYFDVCVVEDPLSGKEVLALEFVLWRKELSVSELEKRVMGFNYGADNRRYDI 175
Query: 235 HTPGVLSLPFPLKFPENYKRVHRYYKEQIQLFQERSYLSPYADARGLKAGSKEFDKRAVA 294
P L F L+ KRV K ++ +Q Y+SPY +A L + S + +K +VA
Sbjct: 176 QFPMFLPKSFALE-----KRV----KTWVEGWQTLPYISPYENAFHLDSNSDQAEKWSVA 226
Query: 295 VMHEMLSFTIEK 306
++HE+LS + K
Sbjct: 227 ILHELLSLLVSK 238