Miyakogusa Predicted Gene

Lj2g3v0808940.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0808940.1 Non Characterized Hit- tr|J3LBP8|J3LBP8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G2,38.18,3e-18,seg,NULL; Ran BP2/NZF zinc finger-like,NULL;
ZF_RANBP2_1,Zinc finger, RanBP2-type; ZF_RANBP2_2,Zinc ,CUFF.35477.1
         (390 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g087890.1 | hypothetical protein | HC | chr6:33077148-3307...   349   2e-96
Medtr4g074230.2 | RNA recognition motif (RRM) superfamily protei...    49   7e-06
Medtr4g074230.1 | RNA recognition motif (RRM) superfamily protei...    49   7e-06

>Medtr6g087890.1 | hypothetical protein | HC |
           chr6:33077148-33070908 | 20130731
          Length = 379

 Score =  349 bits (896), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/363 (60%), Positives = 236/363 (65%), Gaps = 39/363 (10%)

Query: 22  SLVVRPSHTETT---AAA---DYESGELHXXXX-XXXXXXXXXXXXXGYRIRAGSSSPVH 74
           SLVVRPS TE +   AAA   DYE GEL                   GYR RAGSSSPVH
Sbjct: 23  SLVVRPSLTENSPPGAAAHSNDYEPGELRRDPPPVNYSRSDRYSDDAGYRFRAGSSSPVH 82

Query: 75  -RRDADHRLSSDYNHLSXXXXXXXXXXXXXXXXXXXXXARGRVGGRPIGRAFDGPSFGPG 133
            RRDADHR  SDYNH                       ARGR GGRP GRAFDGP +G  
Sbjct: 83  HRRDADHRFPSDYNHFPRNRGFGGGRDFGRFRDPPHPYARGRPGGRPFGRAFDGPGYGHR 142

Query: 134 HARGEG---RNNPNVRPREGDWICPDGLCGNLNFARRDHCNSCNRARPTPAGSPRRAYPS 190
           H RGEG   RNNPNVRPREGDW+CPD LCGNLNFARRD CN C R RP  AGSP R    
Sbjct: 143 HGRGEGLHGRNNPNVRPREGDWMCPDALCGNLNFARRDFCNQCKRPRPAAAGSPPRR--G 200

Query: 191 PPPLHAPQRRFPGPPLDHSPERSMNGYNRSPLRGLGRDGPRDYG-SAAALPPLRHEGRFP 249
            PPLHAP RR+PGPP D SPER MNGY   P R +GRDG RDYG +AAALPPLRHEGRFP
Sbjct: 201 SPPLHAPPRRYPGPPFDRSPERPMNGYRSPPPRLMGRDGLRDYGPAAAALPPLRHEGRFP 260

Query: 250 DPSLHRDRLDYIEDPYRGRSKFDRPPPLDWDSRDRVRDVLANERKGFERRPLSPPAARFD 309
           DP LHR+R+DY++D YRGR KFDRPPPLDWD+RDR RD  +NERKGFERRPLSP A    
Sbjct: 261 DPHLHRERMDYMDDAYRGRGKFDRPPPLDWDNRDRGRDGFSNERKGFERRPLSPSAPLL- 319

Query: 310 RRPLSPPAARFDRRXXXXXXXXXXXXXHHRGG-RWARDVRERSRSPIRGGPPAKDYRRDM 368
             P  PP                     HRGG RW+RDVR+RSRSPIRGGPPAKDYRRD 
Sbjct: 320 --PSLPP---------------------HRGGDRWSRDVRDRSRSPIRGGPPAKDYRRDP 356

Query: 369 FVN 371
            ++
Sbjct: 357 VMS 359


>Medtr4g074230.2 | RNA recognition motif (RRM) superfamily protein |
           HC | chr4:28258835-28264509 | 20130731
          Length = 353

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 134 HARGEGRNNPNVRP--REGDWICPDGLCGNLNFARRDHCNSCNRARP 178
           + RG G+ + + +P  +EGDW+CP+  C N+NFA R  CN C  ARP
Sbjct: 133 NGRGRGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARP 179


>Medtr4g074230.1 | RNA recognition motif (RRM) superfamily protein |
           HC | chr4:28258835-28265511 | 20130731
          Length = 384

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 134 HARGEGRNNPNVRP--REGDWICPDGLCGNLNFARRDHCNSCNRARP 178
           + RG G+ + + +P  +EGDW+CP+  C N+NFA R  CN C  ARP
Sbjct: 133 NGRGRGQIDASSKPWQQEGDWMCPNTSCSNVNFAFRGACNRCGSARP 179