Miyakogusa Predicted Gene

Lj2g3v0765370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0765370.1 Non Characterized Hit- tr|I3T2S9|I3T2S9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.59,0,seg,NULL;
no description,NULL; Abhydrolase_6,NULL; SIGMA FACTOR SIGB REGULATION
PROTEIN RSBQ,NULL; A,CUFF.35356.1
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g086560.1 | sigma factor sigb regulation protein rsbq prot...   424   e-119
Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein...   330   9e-91
Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein...   208   5e-54
Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein...   186   3e-47
Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein...   184   6e-47

>Medtr6g086560.1 | sigma factor sigb regulation protein rsbq
           protein, putative | HC | chr6:32152457-32148021 |
           20130731
          Length = 284

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/280 (74%), Positives = 231/280 (82%), Gaps = 3/280 (1%)

Query: 1   MEPNVNPITL--QKKCLSSSLNAKIEGLGTETLVFAHGYGTDKSIWDKITPFFVE-NYRV 57
           MEPN  P  L  Q   LS+ LNA+  G GTET+VFAHGYGTD+SIWDKITP+F E NYRV
Sbjct: 1   MEPNTKPNMLEQQHNHLSTLLNARTLGTGTETIVFAHGYGTDQSIWDKITPYFTEKNYRV 60

Query: 58  VVFDWAFSGAVEDESLYDPVKYSSXXXXXXXXXXXXXXXXXXXVTFVGHSMSGMIGCLAS 117
           V+FDW FSGA++D++LY+P KYSS                   VTFVGHSMSGMI CLAS
Sbjct: 61  VLFDWPFSGAIKDQNLYNPSKYSSLDAFADDLISLLDQMELKVVTFVGHSMSGMISCLAS 120

Query: 118 IQRPQLFKRLILLGASPRYINTDDYEGGFTSSDIEQLLVNIESNYENWASAFSSLVVDPN 177
           I+RPQLFKRLIL+GASPRYINTDDYEGGFTSSDI+ LL NIESNYENW S FS+ VVDPN
Sbjct: 121 IKRPQLFKRLILVGASPRYINTDDYEGGFTSSDIDNLLKNIESNYENWVSYFSTNVVDPN 180

Query: 178 DEPSVNKFRECLKRMRGEVPVSLAKTVFCCDYRDILEKVETACTIIQSSNDMVVPYSVAL 237
           DEPSV KFRECL +MR EVP+SLAKTVFC DYRDILEKVET CTIIQ+S+DMVVPYSVAL
Sbjct: 181 DEPSVIKFRECLNKMRNEVPLSLAKTVFCHDYRDILEKVETPCTIIQTSSDMVVPYSVAL 240

Query: 238 YMEKKIKGKVTLEVIDTVGHFPQLTAHLQLIDLIKGVLGF 277
           YMEKKIKGKVTLEVIDT GHFPQLTA LQL+D++KGVLGF
Sbjct: 241 YMEKKIKGKVTLEVIDTFGHFPQLTAPLQLVDVLKGVLGF 280


>Medtr3g045440.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr3:14783516-14781798 | 20130731
          Length = 269

 Score =  330 bits (846), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 154/265 (58%), Positives = 197/265 (74%)

Query: 12  KKCLSSSLNAKIEGLGTETLVFAHGYGTDKSIWDKITPFFVENYRVVVFDWAFSGAVEDE 71
           KK LS+SLNA+  G G ET+V  HG+GTD+S W+KI P   ENY +V+FDW FSGA+ D+
Sbjct: 5   KKSLSTSLNARTIGSGPETIVLCHGFGTDQSTWNKIVPLLAENYSLVLFDWPFSGAITDK 64

Query: 72  SLYDPVKYSSXXXXXXXXXXXXXXXXXXXVTFVGHSMSGMIGCLASIQRPQLFKRLILLG 131
           SLY+  KY+S                   +TFVGHSM+ MIGC+ASI++P+LFKR++LL 
Sbjct: 65  SLYNHAKYNSYEPYADELITLMDELDLKCITFVGHSMAAMIGCIASIKKPELFKRIVLLC 124

Query: 132 ASPRYINTDDYEGGFTSSDIEQLLVNIESNYENWASAFSSLVVDPNDEPSVNKFRECLKR 191
           ASPRYINTDDYEGGF  SDIE L+  IES YE+W SA+  + VDPND  SV+KF++CLKR
Sbjct: 125 ASPRYINTDDYEGGFERSDIENLISTIESQYESWVSAYGPIAVDPNDADSVDKFQKCLKR 184

Query: 192 MRGEVPVSLAKTVFCCDYRDILEKVETACTIIQSSNDMVVPYSVALYMEKKIKGKVTLEV 251
           M GEV ++LAKTVF  DYRD++EKV   CTIIQSSND+ VP S+  Y+++ IKG  TLE 
Sbjct: 185 MGGEVAITLAKTVFFSDYRDMVEKVVIPCTIIQSSNDVAVPISIGHYLDENIKGVSTLEF 244

Query: 252 IDTVGHFPQLTAHLQLIDLIKGVLG 276
           ID  GH PQLTAHL+L++++KG++G
Sbjct: 245 IDMTGHCPQLTAHLRLVEVLKGIVG 269


>Medtr1g018320.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr1:5202292-5203901 | 20130731
          Length = 268

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 157/247 (63%), Gaps = 2/247 (0%)

Query: 18  SLNAKIEGLGTETLVFAHGYGTDKSIWDKITPFFVENYRVVVFDWAFSGAVEDESLYDPV 77
           +LN ++EG G + +VFAHG+GTD+S W ++ P+F  +Y+V+++D   +G+V  +  +D  
Sbjct: 9   ALNVRVEGSGDKYIVFAHGFGTDQSAWQRVLPYFTRSYKVILYDLVCAGSVNPD-YFDYR 67

Query: 78  KYSSXXXXXXXXXXXXXXXXXXXVTFVGHSMSGMIGCLASIQRPQLFKRLILLGASPRYI 137
           +Y++                     +VGHS+S MIG LASI+RP+LF +LIL+GASPR++
Sbjct: 68  RYTTLDAYVDDLLNILDSLHVTRCAYVGHSISAMIGMLASIRRPELFSKLILIGASPRFL 127

Query: 138 NT-DDYEGGFTSSDIEQLLVNIESNYENWASAFSSLVVDPNDEPSVNKFRECLKRMRGEV 196
           N  ++Y GGF   +IEQ+   +E+NYE W + F+ L V  +   +V +F   L  MR ++
Sbjct: 128 NDGENYHGGFEQGEIEQVFSAMEANYEAWVNGFAPLAVGADVPTAVREFSRTLFNMRPDI 187

Query: 197 PVSLAKTVFCCDYRDILEKVETACTIIQSSNDMVVPYSVALYMEKKIKGKVTLEVIDTVG 256
            + +++TVF  D R IL  V+  C I+Q++ DM VP +VA YM++ + GK T++ +DT G
Sbjct: 188 SLFVSRTVFNSDLRGILGLVKVPCCIMQTARDMSVPATVATYMKEHLGGKSTVQWLDTEG 247

Query: 257 HFPQLTA 263
           H P L+A
Sbjct: 248 HLPHLSA 254


>Medtr4g095310.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr4:39713387-39710926 | 20130731
          Length = 270

 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 2/245 (0%)

Query: 20  NAKIEGLGTETLVFAHGYGTDKSIWDKITPFFVENYRVVVFDWAFSGAVEDESLYDPVKY 79
           N K+ G G+  +V AHG+GTD+S+W  + P  ++ +RV+++D   +G    +  +D  +Y
Sbjct: 9   NVKVLGSGSRFIVLAHGFGTDQSVWKHLVPHLLDEFRVILYDNMGAGTTNPD-YFDFERY 67

Query: 80  SSXXXXXXXXXXXXXXXXXXXVTFVGHSMSGMIGCLASIQRPQLFKRLILLGASPRYINT 139
           S+                     FVGHS+S MIG +ASI RP LF ++IL+ ASPRY+N 
Sbjct: 68  STLEGYAYDLLAILEELRVDSCIFVGHSVSAMIGTVASISRPDLFNKIILISASPRYLND 127

Query: 140 DDYEGGFTSSDIEQLLVNIESNYENWASAFSSLVVDPNDEP-SVNKFRECLKRMRGEVPV 198
            DY GGF   D++QL   + SNY++W S F+ + V  + E  +V +F   L  MR ++ +
Sbjct: 128 RDYFGGFEQEDLDQLFDAMASNYKSWCSGFAPMAVGGDMESVAVQEFSRTLFNMRPDIAL 187

Query: 199 SLAKTVFCCDYRDILEKVETACTIIQSSNDMVVPYSVALYMEKKIKGKVTLEVIDTVGHF 258
           S+ +T+F  D R IL  V   C IIQS  D+ VP  VA Y+ + +  +  +EV+ T GH 
Sbjct: 188 SVLQTIFKSDMRQILCMVTVPCHIIQSMKDLAVPVVVAEYLHQHVGSESIVEVMSTEGHL 247

Query: 259 PQLTA 263
           PQL++
Sbjct: 248 PQLSS 252


>Medtr5g016150.1 | sigma factor sigb regulation rsbq-like protein |
           HC | chr5:5736714-5740149 | 20130731
          Length = 305

 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 2/245 (0%)

Query: 20  NAKIEGLGTETLVFAHGYGTDKSIWDKITPFFVENYRVVVFDWAFSGAVEDESLYDPVKY 79
           N K+ G G   +V AHG+GTD+S+W    P+ V+++RVV++D   +G    E  +D  ++
Sbjct: 9   NVKVLGTGNRYIVLAHGFGTDQSVWKHFVPYLVDDFRVVLYDNMGAGTTNPE-YFDSERH 67

Query: 80  SSXXXXXXXXXXXXXXXXXXXVTFVGHSMSGMIGCLASIQRPQLFKRLILLGASPRYINT 139
           SS                     FVGHS+S MIG +ASI RP LF +LI++ +SPRY+N 
Sbjct: 68  SSLEGYAYDLLAILEELQIDSCIFVGHSVSAMIGAIASITRPDLFLKLIMVSSSPRYLND 127

Query: 140 DDYEGGFTSSDIEQLLVNIESNYENWASAFSSLVVDPN-DEPSVNKFRECLKRMRGEVPV 198
            +Y GGF   D+ QL   +  NY+ W   F+ L V  + D  +V +F   L  MR ++ +
Sbjct: 128 VNYFGGFEQEDLNQLFNAMAENYKAWCYGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIAL 187

Query: 199 SLAKTVFCCDYRDILEKVETACTIIQSSNDMVVPYSVALYMEKKIKGKVTLEVIDTVGHF 258
            +++T+F  D R IL  V   C IIQ+  DM VP  V+ Y+ + + G+  +EV+ T GH 
Sbjct: 188 IVSRTIFQSDMRQILNLVTVPCHIIQAEKDMAVPVMVSEYLHQHLGGQSIVEVMTTDGHL 247

Query: 259 PQLTA 263
           PQL++
Sbjct: 248 PQLSS 252