Miyakogusa Predicted Gene

Lj2g3v0741700.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0741700.1 Non Characterized Hit- tr|G1TQW9|G1TQW9_RABIT
Uncharacterized protein (Fragment) OS=Oryctolagus
cuni,29.09,1e-18,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
SYNTAXIN-18,NULL; Syntaxin-18_N,SNARE-complex ,CUFF.35329.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701...   533   e-152

>Medtr6g084580.1 | syntaxin-81 protein | HC | chr6:31694227-31701424
           | 20130731
          Length = 309

 Score =  533 bits (1373), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 261/309 (84%), Positives = 274/309 (88%)

Query: 1   MAKARDRTEDFKDAVRHSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60
           MAKARDRTEDFKDAVR SARSLGYDEAKLASILASFIIHKPPQRSPF KAA KTLESIGE
Sbjct: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAFKTLESIGE 60

Query: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120
           L+ FLLKHRKDYTDLHRTTE ERDSIEQEVSAFIKTCQEQIDVLKNSINNEEE SKGWLG
Sbjct: 61  LDHFLLKHRKDYTDLHRTTEHERDSIEQEVSAFIKTCQEQIDVLKNSINNEEENSKGWLG 120

Query: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQPRAVRFQYATNRSTPRRKLNRVTRKN 180
           I TAKANADTIAHKHGVVLILSERLH VTAQFDQ RA+RFQ A NR+ PRRKLNR+T+K+
Sbjct: 121 ITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRITKKD 180

Query: 181 TTETSESGDMELREPDELRSEPLRVQQQLLDDETRALQVELTNLLDTVQETETKMVEMSA 240
           +TETS SGD+ELREPDELRSEP+RVQQQLLDDETRALQVEL++LLDTVQETETKMVEMSA
Sbjct: 181 STETSNSGDVELREPDELRSEPIRVQQQLLDDETRALQVELSSLLDTVQETETKMVEMSA 240

Query: 241 LNHLMSTHVLQQAHQIEHLYEQAVEATKNVELGNKELSQAIQRNXXXXXXXXXXXXXXXX 300
           LNHLM+THVLQQA QIEHLY+QAVEATKNVELGNKELSQAIQRN                
Sbjct: 241 LNHLMATHVLQQAQQIEHLYDQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLFVLTF 300

Query: 301 XXXXXDWYS 309
                DWYS
Sbjct: 301 SIIFLDWYS 309