Miyakogusa Predicted Gene

Lj2g3v0690350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0690350.1 Non Characterized Hit- tr|H0XL55|H0XL55_OTOGA
Uncharacterized protein OS=Otolemur garnettii PE=4
SV=,25.84,1e-18,AMINO ACID TRANSPORTER,NULL; Peroxin-3,Peroxin-3;
seg,NULL; coiled-coil,NULL,CUFF.35208.1
         (369 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g106780.1 | peroxisome biogenesis protein | HC | chr8:4507...   561   e-160
Medtr8g106780.2 | peroxisome biogenesis protein | HC | chr8:4507...   556   e-158
Medtr8g106780.3 | peroxisome biogenesis protein | HC | chr8:4507...   503   e-142

>Medtr8g106780.1 | peroxisome biogenesis protein | HC |
           chr8:45075754-45070010 | 20130731
          Length = 363

 Score =  561 bits (1446), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/370 (72%), Positives = 306/370 (82%), Gaps = 8/370 (2%)

Query: 1   MLSVRDFWRRHRRKLYLTAGVFGGGYFLYKLYDTHXXXXXXXXXXXXXXXXXXXXIKAQI 60
           M SVRDFWRRHRRK++L+ G+ GGGY LYKLY  H                    IK+Q+
Sbjct: 1   MFSVRDFWRRHRRKIFLSVGIVGGGYCLYKLYGAHRQRLDALEMELDVQRQSDELIKSQM 60

Query: 61  QAHFENIQRISDTITLPHAMHNLSCRIAQELDLSHLLERLIQGKGQPTTLTQSEKLDLWG 120
           QAHFENIQRISDTITLPH+MHNLSCRIAQ+LDLSHLLERLIQGKGQP TLTQSEKLDLWG
Sbjct: 61  QAHFENIQRISDTITLPHSMHNLSCRIAQDLDLSHLLERLIQGKGQPNTLTQSEKLDLWG 120

Query: 121 KLKILSFTRMALSIWATILLSLYTKVQVNILGRHLYIDTARNLGISNS-MESGDVVDRED 179
           +LKILSFTRMALS+WAT++LSLYTKVQVNILGRHLYIDTAR+L  SN  MES DVVD ED
Sbjct: 121 RLKILSFTRMALSVWATVMLSLYTKVQVNILGRHLYIDTARSLESSNLLMESEDVVDGED 180

Query: 180 QQKFLGTADFLSQHGMPALISDMEAATKEVIKGKQLSSLFNNTTLHETIMQILDTFMSMG 239
           +QKFLG+ DFLSQHGMPALISDME ATKEV+KGKQL+SLFNNTT  ETI  IL+TFMS G
Sbjct: 181 KQKFLGSVDFLSQHGMPALISDMEEATKEVLKGKQLTSLFNNTTFDETITDILNTFMSRG 240

Query: 240 SPHSWIKYMMPEDVRSHSITAGNDETVPYDVTEFEQLMVEVRAVLSSAEFGSIVEIALKV 299
           SPH W+KY++PED + HS  +G+++TVP D+TEF+QL++E R VLSSAEFGS+VEI+LK 
Sbjct: 241 SPHFWVKYIIPEDAKLHSTASGSNDTVPLDMTEFDQLVMEARGVLSSAEFGSVVEISLKA 300

Query: 300 VVDKLVELMGAKFGGNLTTGLPLARVLPQVAQMCPFLLEEPSKNQFIQVIKNMQEVELFF 359
           VVD L ELMG       TT +PLAR LPQVAQMCP LLEEPSKNQFIQ++KN+ EVELF 
Sbjct: 301 VVDTLRELMG-------TTSVPLARALPQVAQMCPLLLEEPSKNQFIQILKNIPEVELFL 353

Query: 360 TLLYANMPSA 369
           T LYANMPSA
Sbjct: 354 TFLYANMPSA 363


>Medtr8g106780.2 | peroxisome biogenesis protein | HC |
           chr8:45075754-45070010 | 20130731
          Length = 386

 Score =  556 bits (1433), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/368 (72%), Positives = 304/368 (82%), Gaps = 8/368 (2%)

Query: 3   SVRDFWRRHRRKLYLTAGVFGGGYFLYKLYDTHXXXXXXXXXXXXXXXXXXXXIKAQIQA 62
            VRDFWRRHRRK++L+ G+ GGGY LYKLY  H                    IK+Q+QA
Sbjct: 26  CVRDFWRRHRRKIFLSVGIVGGGYCLYKLYGAHRQRLDALEMELDVQRQSDELIKSQMQA 85

Query: 63  HFENIQRISDTITLPHAMHNLSCRIAQELDLSHLLERLIQGKGQPTTLTQSEKLDLWGKL 122
           HFENIQRISDTITLPH+MHNLSCRIAQ+LDLSHLLERLIQGKGQP TLTQSEKLDLWG+L
Sbjct: 86  HFENIQRISDTITLPHSMHNLSCRIAQDLDLSHLLERLIQGKGQPNTLTQSEKLDLWGRL 145

Query: 123 KILSFTRMALSIWATILLSLYTKVQVNILGRHLYIDTARNLGISNS-MESGDVVDREDQQ 181
           KILSFTRMALS+WAT++LSLYTKVQVNILGRHLYIDTAR+L  SN  MES DVVD ED+Q
Sbjct: 146 KILSFTRMALSVWATVMLSLYTKVQVNILGRHLYIDTARSLESSNLLMESEDVVDGEDKQ 205

Query: 182 KFLGTADFLSQHGMPALISDMEAATKEVIKGKQLSSLFNNTTLHETIMQILDTFMSMGSP 241
           KFLG+ DFLSQHGMPALISDME ATKEV+KGKQL+SLFNNTT  ETI  IL+TFMS GSP
Sbjct: 206 KFLGSVDFLSQHGMPALISDMEEATKEVLKGKQLTSLFNNTTFDETITDILNTFMSRGSP 265

Query: 242 HSWIKYMMPEDVRSHSITAGNDETVPYDVTEFEQLMVEVRAVLSSAEFGSIVEIALKVVV 301
           H W+KY++PED + HS  +G+++TVP D+TEF+QL++E R VLSSAEFGS+VEI+LK VV
Sbjct: 266 HFWVKYIIPEDAKLHSTASGSNDTVPLDMTEFDQLVMEARGVLSSAEFGSVVEISLKAVV 325

Query: 302 DKLVELMGAKFGGNLTTGLPLARVLPQVAQMCPFLLEEPSKNQFIQVIKNMQEVELFFTL 361
           D L ELMG       TT +PLAR LPQVAQMCP LLEEPSKNQFIQ++KN+ EVELF T 
Sbjct: 326 DTLRELMG-------TTSVPLARALPQVAQMCPLLLEEPSKNQFIQILKNIPEVELFLTF 378

Query: 362 LYANMPSA 369
           LYANMPSA
Sbjct: 379 LYANMPSA 386


>Medtr8g106780.3 | peroxisome biogenesis protein | HC |
           chr8:45075754-45070010 | 20130731
          Length = 330

 Score =  503 bits (1294), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/312 (77%), Positives = 274/312 (87%), Gaps = 8/312 (2%)

Query: 59  QIQAHFENIQRISDTITLPHAMHNLSCRIAQELDLSHLLERLIQGKGQPTTLTQSEKLDL 118
           ++QAHFENIQRISDTITLPH+MHNLSCRIAQ+LDLSHLLERLIQGKGQP TLTQSEKLDL
Sbjct: 26  RMQAHFENIQRISDTITLPHSMHNLSCRIAQDLDLSHLLERLIQGKGQPNTLTQSEKLDL 85

Query: 119 WGKLKILSFTRMALSIWATILLSLYTKVQVNILGRHLYIDTARNLGISNS-MESGDVVDR 177
           WG+LKILSFTRMALS+WAT++LSLYTKVQVNILGRHLYIDTAR+L  SN  MES DVVD 
Sbjct: 86  WGRLKILSFTRMALSVWATVMLSLYTKVQVNILGRHLYIDTARSLESSNLLMESEDVVDG 145

Query: 178 EDQQKFLGTADFLSQHGMPALISDMEAATKEVIKGKQLSSLFNNTTLHETIMQILDTFMS 237
           ED+QKFLG+ DFLSQHGMPALISDME ATKEV+KGKQL+SLFNNTT  ETI  IL+TFMS
Sbjct: 146 EDKQKFLGSVDFLSQHGMPALISDMEEATKEVLKGKQLTSLFNNTTFDETITDILNTFMS 205

Query: 238 MGSPHSWIKYMMPEDVRSHSITAGNDETVPYDVTEFEQLMVEVRAVLSSAEFGSIVEIAL 297
            GSPH W+KY++PED + HS  +G+++TVP D+TEF+QL++E R VLSSAEFGS+VEI+L
Sbjct: 206 RGSPHFWVKYIIPEDAKLHSTASGSNDTVPLDMTEFDQLVMEARGVLSSAEFGSVVEISL 265

Query: 298 KVVVDKLVELMGAKFGGNLTTGLPLARVLPQVAQMCPFLLEEPSKNQFIQVIKNMQEVEL 357
           K VVD L ELMG       TT +PLAR LPQVAQMCP LLEEPSKNQFIQ++KN+ EVEL
Sbjct: 266 KAVVDTLRELMG-------TTSVPLARALPQVAQMCPLLLEEPSKNQFIQILKNIPEVEL 318

Query: 358 FFTLLYANMPSA 369
           F T LYANMPSA
Sbjct: 319 FLTFLYANMPSA 330