Miyakogusa Predicted Gene

Lj2g3v0690060.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0690060.1 tr|G7LDB1|G7LDB1_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_8g1,86.85,0,TPR-like,NULL; no
description,Tetratricopeptide-like helical; PPR,Pentatricopeptide
repeat; PPR: pen,gene.g39768.t1.1
         (707 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g106950.1 | pentatricopeptide (PPR) repeat protein | HC | ...  1315   0.0  
Medtr8g106910.1 | pentatricopeptide (PPR) repeat protein | HC | ...  1131   0.0  
Medtr7g074040.1 | pentatricopeptide (PPR) repeat protein | HC | ...   668   0.0  
Medtr4g099480.1 | pentatricopeptide (PPR) repeat protein | HC | ...   559   e-159
Medtr5g023040.1 | pentatricopeptide (PPR) repeat protein | HC | ...   559   e-159
Medtr8g065730.2 | PPR containing plant-like protein | HC | chr8:...   548   e-155
Medtr8g065730.1 | PPR containing plant-like protein | HC | chr8:...   548   e-155
Medtr1g073300.1 | pentatricopeptide (PPR) repeat protein | HC | ...   546   e-155
Medtr8g069550.1 | PPR containing plant-like protein | HC | chr8:...   542   e-154
Medtr8g069550.2 | PPR containing plant-like protein | HC | chr8:...   542   e-154
Medtr1g103840.1 | pentatricopeptide (PPR) repeat protein | HC | ...   540   e-153
Medtr2g086150.1 | PPR containing plant-like protein | HC | chr2:...   522   e-148
Medtr5g008600.1 | pentatricopeptide (PPR) repeat protein | HC | ...   518   e-147
Medtr7g076020.1 | pentatricopeptide (PPR) repeat protein | HC | ...   496   e-140
Medtr8g088300.1 | pentatricopeptide (PPR) repeat protein | HC | ...   496   e-140
Medtr1g111020.2 | pentatricopeptide (PPR) repeat protein | HC | ...   494   e-139
Medtr1g039030.1 | pentatricopeptide (PPR) repeat protein | HC | ...   492   e-139
Medtr3g052720.1 | organelle transcript processing protein, putat...   488   e-138
Medtr4g031160.1 | pentatricopeptide (PPR) repeat protein | HC | ...   486   e-137
Medtr5g095690.1 | pentatricopeptide (PPR) repeat protein | HC | ...   486   e-137
Medtr3g029530.1 | pentatricopeptide (PPR) repeat protein | HC | ...   483   e-136
Medtr6g032915.1 | pentatricopeptide (PPR) repeat protein | HC | ...   483   e-136
Medtr7g083820.1 | pentatricopeptide (PPR) repeat protein | HC | ...   483   e-136
Medtr7g083820.2 | pentatricopeptide (PPR) repeat protein | HC | ...   483   e-136
Medtr4g113240.1 | pentatricopeptide (PPR) repeat protein | HC | ...   481   e-135
Medtr4g094402.5 | pentatricopeptide (PPR) repeat protein | HC | ...   481   e-135
Medtr4g094402.4 | pentatricopeptide (PPR) repeat protein | HC | ...   481   e-135
Medtr4g094402.3 | pentatricopeptide (PPR) repeat protein | HC | ...   481   e-135
Medtr4g094402.2 | pentatricopeptide (PPR) repeat protein | HC | ...   481   e-135
Medtr4g113830.1 | organelle transcript processing protein, putat...   478   e-135
Medtr3g105370.2 | pentatricopeptide (PPR) repeat protein | HC | ...   476   e-134
Medtr3g105370.1 | pentatricopeptide (PPR) repeat protein | HC | ...   476   e-134
Medtr3g105370.3 | pentatricopeptide (PPR) repeat protein | HC | ...   475   e-134
Medtr1g037590.1 | pentatricopeptide (PPR) repeat protein | HC | ...   468   e-132
Medtr3g011950.1 | pentatricopeptide (PPR) repeat protein | HC | ...   463   e-130
Medtr1g038860.1 | PPR containing plant-like protein | LC | chr1:...   461   e-129
Medtr4g085110.1 | pentatricopeptide (PPR) repeat protein | HC | ...   461   e-129
Medtr7g011030.1 | pentatricopeptide (PPR) repeat protein | HC | ...   459   e-129
Medtr1g040635.1 | pentatricopeptide (PPR) repeat protein | HC | ...   459   e-129
Medtr4g086490.1 | PPR containing plant protein | HC | chr4:33903...   457   e-128
Medtr1g059280.1 | pentatricopeptide (PPR) repeat protein | HC | ...   457   e-128
Medtr1g111020.1 | pentatricopeptide (PPR) repeat protein | HC | ...   456   e-128
Medtr2g035620.1 | PPR containing plant protein | HC | chr2:15068...   456   e-128
Medtr5g013950.1 | pentatricopeptide (PPR) repeat protein | HC | ...   455   e-128
Medtr1g007610.1 | pentatricopeptide (PPR) repeat protein | HC | ...   455   e-128
Medtr8g086560.1 | PPR containing plant protein | HC | chr8:35911...   454   e-127
Medtr8g089940.1 | pentatricopeptide (PPR) repeat protein | HC | ...   454   e-127
Medtr7g076350.1 | pentatricopeptide (PPR) repeat protein | HC | ...   454   e-127
Medtr1g103660.1 | PPR containing plant-like protein | HC | chr1:...   452   e-127
Medtr4g130500.1 | pentatricopeptide (PPR) repeat protein | HC | ...   452   e-127
Medtr4g094402.1 | pentatricopeptide (PPR) repeat protein | HC | ...   451   e-126
Medtr5g088310.1 | pentatricopeptide (PPR) repeat protein | HC | ...   451   e-126
Medtr3g096420.1 | PPR containing plant-like protein | HC | chr3:...   449   e-126
Medtr8g107740.1 | pentatricopeptide (PPR) repeat protein | HC | ...   448   e-126
Medtr4g095065.1 | pentatricopeptide (PPR) repeat protein | HC | ...   447   e-125
Medtr2g018870.1 | PPR containing plant-like protein | HC | chr2:...   446   e-125
Medtr7g089260.1 | pentatricopeptide (PPR) repeat protein | HC | ...   446   e-125
Medtr1g111670.1 | pentatricopeptide (PPR) repeat protein | HC | ...   444   e-124
Medtr7g079860.1 | pentatricopeptide (PPR) repeat protein | HC | ...   444   e-124
Medtr7g092100.1 | RNAediting factor 1 | HC | chr7:36467361-36465...   443   e-124
Medtr7g037430.1 | pentatricopeptide (PPR) repeat protein | LC | ...   443   e-124
Medtr1g059720.1 | organelle transcript processing protein, putat...   442   e-124
Medtr6g075280.1 | pentatricopeptide (PPR) repeat protein | HC | ...   440   e-123
Medtr5g006570.1 | pentatricopeptide (PPR) repeat protein | HC | ...   440   e-123
Medtr3g434800.1 | pentatricopeptide (PPR) repeat protein | HC | ...   440   e-123
Medtr7g023780.1 | editing factor 22 | HC | chr7:7790817-7787040 ...   439   e-123
Medtr2g094430.1 | pentatricopeptide (PPR) repeat protein | HC | ...   439   e-123
Medtr8g105720.1 | PPR containing plant-like protein | HC | chr8:...   436   e-122
Medtr2g058990.1 | pentatricopeptide (PPR) repeat protein | HC | ...   435   e-122
Medtr3g084440.1 | pentatricopeptide (PPR) repeat protein | HC | ...   431   e-121
Medtr2g101710.1 | PPR containing plant protein | HC | chr2:43758...   430   e-120
Medtr8g027810.1 | pentatricopeptide (PPR) repeat protein | HC | ...   430   e-120
Medtr6g022140.1 | pentatricopeptide (PPR) repeat protein | HC | ...   430   e-120
Medtr6g022140.2 | pentatricopeptide (PPR) repeat protein | HC | ...   429   e-120
Medtr5g006420.1 | organelle transcript processing protein, putat...   427   e-119
Medtr1g071240.1 | pentatricopeptide (PPR) repeat protein | HC | ...   425   e-119
Medtr1g040535.1 | pentatricopeptide (PPR) repeat protein | LC | ...   424   e-118
Medtr4g011570.1 | pentatricopeptide (PPR) repeat protein | HC | ...   423   e-118
Medtr8g089960.1 | pentatricopeptide (PPR) repeat protein | HC | ...   422   e-118
Medtr3g012530.1 | pentatricopeptide (PPR) repeat protein | HC | ...   421   e-117
Medtr4g094502.1 | pentatricopeptide (PPR) repeat protein | HC | ...   421   e-117
Medtr4g094658.1 | pentatricopeptide (PPR) repeat protein | HC | ...   420   e-117
Medtr3g011940.1 | pentatricopeptide (PPR) repeat protein | HC | ...   419   e-117
Medtr8g086040.1 | pentatricopeptide (PPR) repeat protein | HC | ...   416   e-116
Medtr1g059280.2 | pentatricopeptide (PPR) repeat protein | HC | ...   416   e-116
Medtr5g031490.1 | pentatricopeptide (PPR) repeat protein | HC | ...   414   e-115
Medtr3g027990.1 | pentatricopeptide (PPR) repeat protein | HC | ...   413   e-115
Medtr5g040920.1 | pentatricopeptide (PPR) repeat protein | HC | ...   412   e-115
Medtr8g063290.1 | pentatricopeptide (PPR) repeat protein | HC | ...   412   e-115
Medtr7g016960.1 | pentatricopeptide (PPR) repeat protein | HC | ...   409   e-114
Medtr2g071810.1 | PPR containing plant-like protein | HC | chr2:...   405   e-113
Medtr4g094645.1 | pentatricopeptide (PPR) repeat protein | HC | ...   404   e-112
Medtr1g059810.1 | pentatricopeptide (PPR) repeat protein | HC | ...   401   e-112
Medtr6g060510.1 | pentatricopeptide (PPR) repeat protein | HC | ...   401   e-111
Medtr5g008260.1 | pentatricopeptide (PPR) repeat protein | HC | ...   401   e-111
Medtr7g011840.1 | PPR containing plant-like protein | HC | chr7:...   397   e-110
Medtr7g103230.1 | PPR containing plant-like protein | HC | chr7:...   394   e-109
Medtr8g105210.1 | PPR containing plant-like protein | HC | chr8:...   394   e-109
Medtr0013s0120.1 | pentatricopeptide (PPR) repeat protein | HC |...   391   e-108
Medtr8g066250.1 | PPR containing plant-like protein | HC | chr8:...   389   e-108
Medtr7g093900.2 | PPR containing plant-like protein | HC | chr7:...   385   e-107
Medtr5g049780.1 | pentatricopeptide (PPR) repeat protein | HC | ...   385   e-106
Medtr4g088840.1 | pentatricopeptide (PPR) repeat protein | HC | ...   384   e-106
Medtr1g012380.1 | PPR containing plant-like protein | HC | chr1:...   384   e-106
Medtr4g087150.1 | PPR containing plant-like protein | HC | chr4:...   380   e-105
Medtr7g093900.1 | PPR containing plant-like protein | HC | chr7:...   378   e-104
Medtr5g071190.1 | PPR containing plant-like protein | HC | chr5:...   376   e-104
Medtr3g098280.1 | pentatricopeptide (PPR) repeat protein | HC | ...   372   e-103
Medtr5g067140.1 | pentatricopeptide (PPR) repeat protein | HC | ...   372   e-102
Medtr6g012850.1 | pentatricopeptide (PPR) repeat protein | HC | ...   371   e-102
Medtr2g021710.1 | PPR containing plant-like protein | HC | chr2:...   370   e-102
Medtr3g117150.1 | organelle transcript processing protein, putat...   370   e-102
Medtr7g078420.1 | PPR containing plant-like protein | HC | chr7:...   368   e-101
Medtr7g106930.1 | pentatricopeptide (PPR) repeat protein | HC | ...   366   e-101
Medtr7g078360.1 | PPR containing plant-like protein | HC | chr7:...   366   e-101
Medtr1g007600.1 | pentatricopeptide (PPR) repeat protein | HC | ...   365   e-101
Medtr2g436470.1 | pentatricopeptide (PPR) repeat protein | HC | ...   365   e-100
Medtr2g042550.1 | pentatricopeptide (PPR) repeat protein | HC | ...   364   e-100
Medtr5g027980.1 | pentatricopeptide (PPR) repeat protein | HC | ...   362   e-100
Medtr1g099590.1 | pentatricopeptide (PPR) repeat protein | HC | ...   361   1e-99
Medtr4g011730.1 | PPR containing plant-like protein | HC | chr4:...   360   2e-99
Medtr7g113540.1 | PPR containing plant-like protein | HC | chr7:...   359   5e-99
Medtr5g018690.1 | PPR containing protein | HC | chr5:6968759-697...   356   4e-98
Medtr4g119420.1 | pentatricopeptide (PPR) repeat protein | HC | ...   356   4e-98
Medtr0493s0010.1 | pentatricopeptide (PPR) repeat protein | HC |...   354   1e-97
Medtr1g040585.1 | pentatricopeptide (PPR) repeat protein | HC | ...   354   2e-97
Medtr1g040565.1 | pentatricopeptide (PPR) repeat protein | HC | ...   353   3e-97
Medtr8g098250.1 | PPR containing plant-like protein | HC | chr8:...   350   2e-96
Medtr7g076707.1 | PPR containing plant-like protein | HC | chr7:...   349   7e-96
Medtr7g417770.1 | PPR containing plant-like protein | HC | chr7:...   348   8e-96
Medtr7g017700.1 | PPR containing plant-like protein | HC | chr7:...   348   8e-96
Medtr5g044260.1 | PPR containing plant-like protein | HC | chr5:...   346   5e-95
Medtr4g119120.1 | PPR containing plant-like protein | HC | chr4:...   346   5e-95
Medtr4g024860.1 | SLOW growth protein | HC | chr4:8430392-842602...   345   8e-95
Medtr7g109860.1 | pentatricopeptide (PPR) repeat protein | HC | ...   345   9e-95
Medtr7g100810.1 | pentatricopeptide (PPR) repeat protein | HC | ...   344   2e-94
Medtr2g072010.1 | PPR containing plant-like protein | HC | chr2:...   341   1e-93
Medtr3g096440.1 | PPR containing plant-like protein | HC | chr3:...   340   2e-93
Medtr4g131300.1 | PPR containing plant-like protein | HC | chr4:...   339   6e-93
Medtr4g094692.1 | pentatricopeptide (PPR) repeat protein | HC | ...   339   6e-93
Medtr4g068900.1 | PPR containing plant-like protein | HC | chr4:...   339   6e-93
Medtr7g011100.1 | pentatricopeptide (PPR) repeat protein | HC | ...   338   1e-92
Medtr3g045450.1 | pentatricopeptide (PPR) repeat protein | HC | ...   337   2e-92
Medtr6g060470.1 | pentatricopeptide (PPR) repeat protein | HC | ...   336   6e-92
Medtr7g056073.1 | basic helix loop helix protein, putative | HC ...   335   6e-92
Medtr7g005870.1 | PPR containing plant-like protein | HC | chr7:...   335   1e-91
Medtr8g063450.1 | PPR containing plant-like protein | HC | chr8:...   334   2e-91
Medtr1g084570.1 | PPR containing plant-like protein | HC | chr1:...   333   2e-91
Medtr8g075460.1 | PPR containing plant-like protein | HC | chr8:...   333   3e-91
Medtr7g105440.1 | PPR containing plant-like protein | HC | chr7:...   333   3e-91
Medtr4g014050.1 | PPR containing plant-like protein | HC | chr4:...   328   1e-89
Medtr7g105540.1 | PPR containing plant-like protein | HC | chr7:...   326   6e-89
Medtr4g015760.4 | PPR containing plant-like protein | HC | chr4:...   325   1e-88
Medtr4g015760.1 | PPR containing plant-like protein | HC | chr4:...   325   1e-88
Medtr4g032895.1 | pentatricopeptide (PPR) repeat protein | HC | ...   324   1e-88
Medtr4g015760.2 | PPR containing plant-like protein | HC | chr4:...   324   2e-88
Medtr4g015760.3 | PPR containing plant-like protein | HC | chr4:...   324   2e-88
Medtr6g018720.1 | PPR containing plant-like protein | HC | chr6:...   322   6e-88
Medtr5g020650.1 | PPR containing plant-like protein | HC | chr5:...   321   2e-87
Medtr3g089880.1 | pentatricopeptide (PPR) repeat protein | HC | ...   321   2e-87
Medtr5g008690.1 | PPR containing plant-like protein | HC | chr5:...   320   3e-87
Medtr4g094592.1 | pentatricopeptide (PPR) repeat protein | HC | ...   320   3e-87
Medtr2g087120.1 | PPR containing plant-like protein | HC | chr2:...   320   3e-87
Medtr3g109380.2 | PPR containing plant-like protein | HC | chr3:...   319   5e-87
Medtr3g109380.1 | PPR containing plant-like protein | HC | chr3:...   319   5e-87
Medtr4g073930.1 | PPR containing plant-like protein | HC | chr4:...   319   7e-87
Medtr4g108890.1 | PPR containing plant-like protein | HC | chr4:...   318   1e-86
Medtr1g067280.1 | PPR containing plant-like protein | HC | chr1:...   318   1e-86
Medtr1g085700.1 | pentatricopeptide (PPR) repeat protein, putati...   317   2e-86
Medtr5g008840.1 | pentatricopeptide (PPR) repeat protein | HC | ...   317   2e-86
Medtr8g031210.1 | PPR containing plant-like protein | HC | chr8:...   317   2e-86
Medtr8g031210.3 | PPR containing plant-like protein | HC | chr8:...   317   2e-86
Medtr6g066360.1 | PPR containing plant-like protein | HC | chr6:...   317   3e-86
Medtr8g031210.2 | PPR containing plant-like protein | HC | chr8:...   316   5e-86
Medtr1g112500.1 | pentatricopeptide (PPR) repeat protein | HC | ...   315   1e-85
Medtr4g118700.1 | PPR containing plant-like protein | HC | chr4:...   315   1e-85
Medtr8g027150.1 | PPR containing plant-like protein | HC | chr8:...   315   1e-85
Medtr7g053240.1 | pentatricopeptide (PPR) repeat protein | HC | ...   315   1e-85
Medtr8g068150.1 | SLOW growth protein, putative | HC | chr8:2840...   315   1e-85
Medtr8g028890.1 | PPR containing plant-like protein | HC | chr8:...   315   1e-85
Medtr3g072900.1 | PPR containing plant-like protein | HC | chr3:...   314   2e-85
Medtr2g024080.1 | PPR containing plant-like protein | HC | chr2:...   313   4e-85
Medtr4g098940.1 | PPR containing plant-like protein | HC | chr4:...   312   7e-85
Medtr2g036960.1 | PPR containing plant-like protein | HC | chr2:...   311   1e-84
Medtr2g007570.1 | PPR containing plant-like protein | HC | chr2:...   311   2e-84
Medtr4g133610.1 | PPR containing plant-like protein | HC | chr4:...   310   4e-84
Medtr3g011920.1 | PPR containing plant-like protein | HC | chr3:...   309   6e-84
Medtr5g098860.1 | PPR containing plant-like protein | HC | chr5:...   308   8e-84
Medtr1g073160.1 | PPR containing plant-like protein | HC | chr1:...   306   6e-83
Medtr3g098230.1 | PPR containing plant-like protein | HC | chr3:...   304   2e-82
Medtr8g066670.1 | chlororespiratory reduction protein, putative ...   303   5e-82
Medtr8g035960.1 | PPR containing plant-like protein | HC | chr8:...   302   9e-82
Medtr5g094220.1 | PPR containing plant-like protein | HC | chr5:...   301   1e-81
Medtr2g082550.1 | PPR containing plant-like protein, putative | ...   300   2e-81
Medtr6g093170.1 | PPR containing protein | HC | chr6:35177726-35...   298   9e-81
Medtr3g101700.1 | PPR containing plant-like protein | HC | chr3:...   298   1e-80
Medtr6g059820.1 | PPR containing plant-like protein | HC | chr6:...   297   2e-80
Medtr5g018370.1 | PPR containing plant-like protein | HC | chr5:...   297   2e-80
Medtr1g040000.1 | PPR containing plant-like protein | HC | chr1:...   295   1e-79
Medtr8g087980.1 | PPR containing plant-like protein | HC | chr8:...   295   1e-79
Medtr1g040705.1 | PPR containing plant-like protein | HC | chr1:...   293   3e-79
Medtr1g040705.3 | PPR containing plant-like protein | HC | chr1:...   293   3e-79
Medtr2g015530.1 | pentatricopeptide (PPR) repeat protein | HC | ...   293   5e-79
Medtr3g026690.1 | PPR containing plant-like protein | HC | chr3:...   292   7e-79
Medtr4g074150.2 | PPR containing plant-like protein | HC | chr4:...   292   1e-78
Medtr4g074150.1 | PPR containing plant-like protein | HC | chr4:...   292   1e-78
Medtr5g043450.1 | PPR containing plant-like protein | HC | chr5:...   291   1e-78
Medtr1g040705.2 | PPR containing plant-like protein | HC | chr1:...   291   1e-78
Medtr4g108030.1 | PPR containing plant-like protein | HC | chr4:...   291   2e-78
Medtr5g042450.1 | PPR containing plant-like protein | HC | chr5:...   290   3e-78
Medtr5g042450.2 | PPR containing plant-like protein | HC | chr5:...   290   3e-78
Medtr4g064770.1 | pentatricopeptide (PPR) repeat protein | HC | ...   290   3e-78
Medtr5g025580.1 | PPR containing plant-like protein | HC | chr5:...   290   4e-78
Medtr4g074470.1 | PPR containing plant-like protein | HC | chr4:...   289   7e-78
Medtr5g091640.1 | PPR containing plant-like protein | HC | chr5:...   288   1e-77
Medtr7g032360.1 | PPR containing plant-like protein | HC | chr7:...   288   1e-77
Medtr1g114220.1 | PPR containing plant-like protein | HC | chr1:...   288   1e-77
Medtr1g041310.1 | pentatricopeptide (PPR) repeat protein | HC | ...   286   6e-77
Medtr2g049310.1 | PPR containing plant-like protein | HC | chr2:...   285   2e-76
Medtr6g091880.1 | PPR containing plant-like protein | HC | chr6:...   283   3e-76
Medtr4g007160.1 | PPR containing plant-like protein | HC | chr4:...   281   1e-75
Medtr4g082470.1 | PPR containing plant-like protein | HC | chr4:...   281   1e-75
Medtr2g048855.1 | pentatricopeptide (PPR) repeat protein | HC | ...   281   2e-75
Medtr1g052100.1 | PPR containing plant-like protein | HC | chr1:...   280   3e-75
Medtr8g074780.1 | PPR containing plant-like protein | HC | chr8:...   279   7e-75
Medtr5g043780.1 | PPR containing plant-like protein | HC | chr5:...   278   1e-74
Medtr2g016780.1 | editing factor, putative | HC | chr2:5197710-5...   278   2e-74
Medtr5g024360.1 | PPR containing plant-like protein | HC | chr5:...   276   5e-74
Medtr2g009760.1 | PPR containing plant-like protein | HC | chr2:...   275   1e-73
Medtr2g022040.1 | PPR containing plant-like protein | HC | chr2:...   275   1e-73
Medtr3g466010.1 | PPR containing plant-like protein | HC | chr3:...   274   2e-73
Medtr2g013500.1 | PPR containing plant-like protein | HC | chr2:...   274   2e-73
Medtr4g078750.1 | PPR containing plant-like protein | HC | chr4:...   273   4e-73
Medtr1g083890.1 | PPR containing plant-like protein | HC | chr1:...   270   3e-72
Medtr5g024100.1 | PPR containing plant-like protein | HC | chr5:...   270   4e-72
Medtr3g006800.1 | pentatricopeptide (PPR) repeat protein | HC | ...   269   7e-72
Medtr7g108530.1 | PPR containing plant-like protein | HC | chr7:...   268   2e-71
Medtr3g005330.1 | PPR containing plant-like protein | HC | chr3:...   267   2e-71
Medtr5g038580.1 | PPR containing plant-like protein | HC | chr5:...   266   6e-71
Medtr3g080230.1 | PPR containing plant-like protein | HC | chr3:...   266   6e-71
Medtr3g080230.2 | PPR containing plant-like protein | HC | chr3:...   266   6e-71
Medtr5g012660.1 | PPR containing plant-like protein | HC | chr5:...   265   2e-70
Medtr2g021850.1 | PPR containing plant-like protein | HC | chr2:...   265   2e-70
Medtr6g034150.1 | PPR containing plant-like protein | HC | chr6:...   264   2e-70
Medtr6g460480.1 | organelle transcript processing protein, putat...   264   3e-70
Medtr4g086270.1 | PPR containing plant-like protein | HC | chr4:...   263   3e-70
Medtr3g111500.1 | PPR containing plant-like protein | HC | chr3:...   263   5e-70
Medtr2g026210.1 | PPR containing plant-like protein | HC | chr2:...   263   5e-70
Medtr4g108660.1 | PPR containing plant-like protein | HC | chr4:...   261   2e-69
Medtr7g033400.1 | PPR containing protein | HC | chr7:12012362-12...   261   2e-69
Medtr3g088825.1 | PPR containing plant-like protein | HC | chr3:...   260   3e-69
Medtr3g088835.1 | PPR containing plant-like protein | HC | chr3:...   255   1e-67
Medtr3g088820.1 | PPR containing plant-like protein | HC | chr3:...   254   2e-67
Medtr7g082550.1 | PPR containing plant-like protein | HC | chr7:...   254   3e-67
Medtr0011s0300.1 | PPR containing plant-like protein | HC | scaf...   251   1e-66
Medtr3g077200.1 | PPR containing plant-like protein | HC | chr3:...   249   5e-66
Medtr8g096030.1 | PPR containing plant-like protein | HC | chr8:...   249   1e-65
Medtr6g092170.1 | PPR containing plant-like protein | HC | chr6:...   248   2e-65
Medtr8g479320.2 | PPR containing plant-like protein | HC | chr8:...   247   2e-65
Medtr8g479320.1 | PPR containing plant-like protein | HC | chr8:...   247   2e-65
Medtr5g043920.1 | PPR containing plant-like protein | HC | chr5:...   247   4e-65
Medtr6g092220.1 | PPR containing plant-like protein | HC | chr6:...   243   7e-64
Medtr8g102760.1 | PPR containing plant-like protein | HC | chr8:...   242   9e-64
Medtr6g065190.1 | PPR repeat protein | LC | chr6:24137605-241338...   242   1e-63
Medtr6g016020.1 | PPR containing plant-like protein | HC | chr6:...   239   6e-63
Medtr3g063220.1 | PPR containing plant-like protein | HC | chr3:...   239   8e-63
Medtr7g111120.1 | PPR containing plant-like protein | HC | chr7:...   237   3e-62
Medtr5g022740.1 | PPR containing plant-like protein | HC | chr5:...   236   7e-62
Medtr4g023510.1 | PPR containing plant-like protein | HC | chr4:...   236   7e-62
Medtr2g028240.1 | PPR containing plant-like protein | HC | chr2:...   234   2e-61
Medtr3g037470.1 | TPR superfamily protein | HC | chr3:13772234-1...   228   2e-59
Medtr5g031630.1 | PPR containing plant-like protein, putative | ...   224   2e-58
Medtr2g061460.1 | pentatricopeptide (PPR) repeat protein | HC | ...   221   3e-57
Medtr2g019350.1 | PPR containing plant-like protein | HC | chr2:...   219   7e-57
Medtr7g084830.1 | PPR containing plant-like protein | HC | chr7:...   219   9e-57
Medtr8g065040.1 | PPR containing plant-like protein | HC | chr8:...   214   3e-55
Medtr3g117620.1 | PPR containing plant-like protein | HC | chr3:...   206   5e-53
Medtr3g408390.1 | PPR containing plant-like protein | HC | chr3:...   203   4e-52
Medtr4g087150.2 | PPR containing plant-like protein | HC | chr4:...   203   4e-52
Medtr5g068510.1 | PPR containing plant-like protein | HC | chr5:...   196   6e-50
Medtr2g087110.1 | pentatricopeptide (PPR) repeat protein | HC | ...   192   1e-48
Medtr8g009490.1 | pentatricopeptide (PPR) repeat protein | HC | ...   191   2e-48
Medtr2g087200.1 | pentatricopeptide (PPR) repeat protein | HC | ...   188   1e-47
Medtr4g006900.1 | PPR containing plant-like protein | HC | chr4:...   181   3e-45
Medtr4g083630.1 | PPR containing plant-like protein | HC | chr4:...   180   4e-45
Medtr1g014340.1 | PPR containing plant-like protein | HC | chr1:...   170   4e-42
Medtr1g014340.2 | PPR containing plant-like protein | HC | chr1:...   170   4e-42
Medtr2g099400.1 | PPR superfamily protein | HC | chr2:42618637-4...   168   2e-41
Medtr8g106955.1 | DYW nucleic acid deaminase family protein | HC...   167   3e-41
Medtr4g084680.1 | PPR containing plant-like protein | HC | chr4:...   155   1e-37
Medtr5g090210.1 | PPR containing plant-like protein | HC | chr5:...   147   3e-35
Medtr6g471100.1 | pentatricopeptide (PPR) repeat protein | LC | ...   140   4e-33
Medtr8g107050.1 | pentatricopeptide (PPR) repeat protein | LC | ...   137   3e-32
Medtr8g107050.2 | pentatricopeptide (PPR) repeat protein | LC | ...   137   4e-32
Medtr4g075270.1 | PPR containing plant-like protein | HC | chr4:...   137   5e-32
Medtr4g108650.1 | PPR containing plant-like protein | HC | chr4:...   135   2e-31
Medtr5g029690.1 | PPR containing plant-like protein | HC | chr5:...   135   2e-31
Medtr5g090170.4 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr5g090170.2 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr5g090170.3 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr5g090170.5 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr5g090170.6 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr5g090170.1 | PPR containing plant-like protein | HC | chr5:...   134   4e-31
Medtr7g067460.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   133   6e-31
Medtr5g095130.1 | PPR containing plant-like protein | HC | chr5:...   133   6e-31
Medtr6g024410.1 | DYW nucleic acid deaminase family protein | HC...   132   2e-30
Medtr8g064830.1 | pentatricopeptide (PPR) repeat protein | HC | ...   131   3e-30
Medtr5g025700.1 | DYW nucleic acid deaminase family protein | LC...   130   7e-30
Medtr5g031740.1 | PPR containing plant-like protein | HC | chr5:...   129   9e-30
Medtr3g105900.1 | proton gradient regulation protein | HC | chr3...   129   1e-29
Medtr4g068360.1 | PPR containing plant-like protein | HC | chr4:...   128   2e-29
Medtr5g007250.1 | PPR containing plant-like protein | HC | chr5:...   128   2e-29
Medtr4g091600.1 | PPR containing plant-like protein | HC | chr4:...   127   3e-29
Medtr4g108060.2 | PPR containing plant-like protein | HC | chr4:...   127   3e-29
Medtr2g049740.1 | PPR containing plant-like protein | HC | chr2:...   126   6e-29
Medtr4g108060.1 | PPR containing plant-like protein | HC | chr4:...   126   9e-29
Medtr6g072030.1 | pentatricopeptide (PPR) repeat protein | HC | ...   124   5e-28
Medtr6g079250.1 | pentatricopeptide (PPR) repeat protein | HC | ...   123   6e-28
Medtr7g451470.1 | PPR containing plant-like protein | LC | chr7:...   123   7e-28
Medtr3g053350.1 | PPR containing plant-like protein | HC | chr3:...   123   8e-28
Medtr3g053350.2 | PPR containing plant-like protein | HC | chr3:...   123   8e-28
Medtr6g079590.1 | pentatricopeptide (PPR) repeat protein | LC | ...   122   9e-28
Medtr1g045850.1 | pentatricopeptide (PPR) repeat protein | LC | ...   122   1e-27
Medtr4g084790.1 | PPR domain protein | HC | chr4:33048235-330493...   122   1e-27
Medtr1g031720.1 | PPR containing plant-like protein | LC | chr1:...   122   1e-27
Medtr4g074390.1 | PPR containing plant-like protein | HC | chr4:...   121   2e-27
Medtr1g033960.1 | PPR containing plant-like protein | HC | chr1:...   121   2e-27
Medtr0237s0070.1 | pentatricopeptide (PPR) repeat protein | LC |...   121   2e-27
Medtr7g066990.2 | pentatricopeptide (PPR) repeat protein | HC | ...   121   2e-27
Medtr7g066990.1 | pentatricopeptide (PPR) repeat protein | HC | ...   121   2e-27
Medtr7g017530.1 | PPR containing plant protein | HC | chr7:55963...   120   4e-27
Medtr7g103600.1 | pentatricopeptide (PPR) repeat protein | HC | ...   120   4e-27
Medtr2g035450.1 | PPR containing plant-like protein | HC | chr2:...   120   4e-27
Medtr3g037490.1 | PPR containing plant-like protein | HC | chr3:...   120   5e-27
Medtr4g089005.1 | pentatricopeptide (PPR) repeat protein | HC | ...   120   6e-27
Medtr1g050495.1 | pentatricopeptide (PPR) repeat protein | LC | ...   120   7e-27
Medtr1g095880.1 | PPR containing plant-like protein | HC | chr1:...   119   8e-27
Medtr1g112240.1 | PPR containing plant-like protein | HC | chr1:...   119   8e-27
Medtr1g048080.1 | pentatricopeptide (PPR) repeat protein | HC | ...   119   1e-26
Medtr6g079180.1 | pentatricopeptide (PPR) repeat protein | HC | ...   119   1e-26
Medtr6g079830.1 | pentatricopeptide (PPR) repeat protein | LC | ...   118   2e-26
Medtr6g079210.1 | pentatricopeptide (PPR) repeat protein | HC | ...   118   2e-26
Medtr6g065540.1 | pentatricopeptide (PPR) repeat protein | HC | ...   117   3e-26
Medtr2g036080.1 | PPR containing plant-like protein | HC | chr2:...   117   3e-26
Medtr6g079380.1 | pentatricopeptide (PPR) repeat protein | LC | ...   117   4e-26
Medtr6g069300.1 | pentatricopeptide (PPR) repeat protein | HC | ...   116   9e-26
Medtr8g098755.1 | PPR containing plant-like protein | HC | chr8:...   116   9e-26
Medtr4g076540.1 | PPR containing plant-like protein | HC | chr4:...   116   1e-25
Medtr8g105170.1 | PPR containing plant-like protein | LC | chr8:...   115   1e-25
Medtr6g079920.1 | pentatricopeptide (PPR) repeat protein | LC | ...   115   1e-25
Medtr7g017570.1 | PPR containing plant protein | HC | chr7:56046...   115   2e-25
Medtr1g080110.1 | pentatricopeptide (PPR) repeat protein | HC | ...   114   3e-25
Medtr6g077540.1 | pentatricopeptide (PPR) repeat protein | HC | ...   114   4e-25
Medtr5g077220.1 | PPR containing plant-like protein | HC | chr5:...   114   4e-25
Medtr6g069840.3 | pentatricopeptide (PPR) repeat protein | HC | ...   112   9e-25
Medtr6g069840.2 | pentatricopeptide (PPR) repeat protein | HC | ...   112   9e-25
Medtr4g023520.1 | PPR repeat protein | LC | chr4:7956288-7959311...   112   1e-24
Medtr3g061000.1 | pentatricopeptide (PPR) repeat protein | LC | ...   112   1e-24
Medtr1g045880.1 | PPR containing plant-like protein | HC | chr1:...   111   2e-24
Medtr4g107210.1 | PPR containing plant-like protein | HC | chr4:...   111   2e-24
Medtr8g070060.1 | pentatricopeptide (PPR) repeat protein | HC | ...   110   3e-24
Medtr8g015530.1 | PPR repeat protein | LC | chr8:5078258-5077407...   110   4e-24
Medtr0054s0140.1 | pentatricopeptide (PPR) repeat protein | LC |...   110   4e-24
Medtr8g071970.1 | PPR containing plant-like protein | HC | chr8:...   110   5e-24
Medtr0014s0180.1 | pentatricopeptide (PPR) repeat protein | LC |...   109   8e-24
Medtr2g041700.1 | PPR containing plant-like protein | HC | chr2:...   109   9e-24
Medtr6g069840.1 | pentatricopeptide (PPR) repeat protein | HC | ...   109   1e-23
Medtr6g022260.1 | PPR containing plant-like protein | HC | chr6:...   109   1e-23
Medtr7g082690.1 | PPR containing plant-like protein | HC | chr7:...   108   1e-23
Medtr6g078160.1 | pentatricopeptide (PPR) repeat protein | HC | ...   108   1e-23
Medtr1g035250.1 | PPR containing plant-like protein | HC | chr1:...   108   2e-23
Medtr7g091410.1 | PPR containing plant-like protein | HC | chr7:...   108   2e-23
Medtr7g011500.1 | pentatricopeptide (PPR) repeat protein | LC | ...   108   3e-23
Medtr3g054110.1 | pentatricopeptide (PPR) repeat protein | HC | ...   107   3e-23
Medtr7g091410.2 | PPR containing plant-like protein | HC | chr7:...   107   4e-23
Medtr6g078210.1 | pentatricopeptide (PPR) repeat protein | LC | ...   107   5e-23
Medtr0014s0210.1 | pentatricopeptide (PPR) repeat protein | LC |...   107   5e-23
Medtr7g405940.1 | PPR containing plant-like protein | HC | chr7:...   107   6e-23
Medtr6g079310.1 | pentatricopeptide (PPR) repeat protein | HC | ...   107   6e-23
Medtr3g091500.1 | pentatricopeptide (PPR) repeat protein | LC | ...   106   6e-23
Medtr7g076550.1 | pentatricopeptide (PPR) repeat protein | HC | ...   106   7e-23
Medtr2g102210.1 | PPR containing plant-like protein | HC | chr2:...   106   7e-23
Medtr6g478130.1 | pentatricopeptide (PPR) repeat protein | HC | ...   106   8e-23
Medtr2g035630.1 | pentatricopeptide (PPR) repeat protein | HC | ...   106   9e-23
Medtr6g079220.1 | pentatricopeptide (PPR) repeat protein | LC | ...   106   1e-22
Medtr6g079240.1 | pentatricopeptide (PPR) repeat protein | HC | ...   106   1e-22
Medtr0014s0250.1 | pentatricopeptide (PPR) repeat protein | LC |...   105   1e-22
Medtr6g069180.1 | pentatricopeptide (PPR) repeat protein | LC | ...   105   1e-22
Medtr6g069180.2 | pentatricopeptide (PPR) repeat protein | LC | ...   105   1e-22
Medtr3g083680.1 | PPR containing plant-like protein | HC | chr3:...   105   1e-22
Medtr5g025200.1 | PPR repeat protein | HC | chr5:10223562-102249...   105   2e-22
Medtr7g024140.1 | PPR containing plant-like protein, putative | ...   104   3e-22
Medtr6g079960.1 | pentatricopeptide (PPR) repeat protein, putati...   104   3e-22
Medtr1g068960.1 | PPR containing plant-like protein | HC | chr1:...   104   4e-22
Medtr2g006810.1 | PPR containing plant-like protein | HC | chr2:...   103   4e-22
Medtr6g080210.1 | pentatricopeptide (PPR) repeat protein | HC | ...   103   6e-22
Medtr6g065150.1 | PPR domain protein | LC | chr6:24123555-241231...   103   6e-22
Medtr2g103520.1 | PPR containing plant-like protein | HC | chr2:...   103   8e-22
Medtr6g080200.1 | pentatricopeptide (PPR) repeat protein | HC | ...   102   9e-22
Medtr6g080200.2 | pentatricopeptide (PPR) repeat protein | HC | ...   102   9e-22
Medtr0110s0060.1 | pentatricopeptide (PPR) repeat protein | HC |...   102   9e-22
Medtr3g034990.2 | pentatricopeptide (PPR) repeat protein | LC | ...   102   1e-21
Medtr3g034990.1 | pentatricopeptide (PPR) repeat protein | LC | ...   102   1e-21
Medtr8g054410.2 | PPR containing plant-like protein | HC | chr8:...   102   1e-21
Medtr8g054410.1 | PPR containing plant-like protein | HC | chr8:...   102   1e-21
Medtr2g036560.1 | PPR containing plant-like protein | HC | chr2:...   101   2e-21
Medtr6g079440.1 | RNA processing factor 2, putative | HC | chr6:...   101   2e-21
Medtr5g039700.1 | PPR containing plant-like protein | HC | chr5:...   101   3e-21
Medtr6g081920.1 | pentatricopeptide (PPR) repeat protein | LC | ...   101   3e-21
Medtr7g091410.3 | PPR containing plant-like protein | HC | chr7:...   101   3e-21
Medtr5g077930.1 | PPR containing plant-like protein | HC | chr5:...   100   4e-21
Medtr1g040765.1 | PPR containing plant-like protein | HC | chr1:...   100   4e-21
Medtr1g010020.2 | PPR containing plant-like protein | HC | chr1:...   100   6e-21
Medtr7g091470.1 | PPR containing plant-like protein | HC | chr7:...   100   6e-21
Medtr1g010020.1 | PPR containing plant-like protein | HC | chr1:...   100   9e-21
Medtr5g089850.1 | PPR containing protein | HC | chr5:39081850-39...   100   9e-21
Medtr2g064660.1 | DYW nucleic acid deaminase family protein | HC...    99   1e-20
Medtr2g037740.1 | PPR containing plant-like protein | HC | chr2:...    99   1e-20
Medtr5g024320.1 | PPR containing plant-like protein | HC | chr5:...    99   1e-20
Medtr6g078190.1 | pentatricopeptide (PPR) repeat protein | LC | ...    99   2e-20
Medtr2g094420.1 | PPR containing plant-like protein | HC | chr2:...    98   3e-20
Medtr7g091410.4 | PPR containing plant-like protein | HC | chr7:...    97   4e-20
Medtr6g079890.1 | pentatricopeptide (PPR) repeat protein | LC | ...    97   5e-20
Medtr7g007400.1 | PPR containing plant-like protein | HC | chr7:...    97   5e-20
Medtr0429s0020.1 | pentatricopeptide (PPR) repeat protein | LC |...    97   5e-20
Medtr6g478210.1 | pentatricopeptide (PPR) repeat protein | HC | ...    97   5e-20
Medtr7g012890.1 | pentatricopeptide (PPR) repeat protein | LC | ...    97   6e-20
Medtr8g083130.1 | pentatricopeptide (PPR) repeat protein | HC | ...    97   6e-20
Medtr2g437460.1 | pentatricopeptide (PPR) repeat protein | HC | ...    96   8e-20
Medtr3g448620.1 | pentatricopeptide (PPR) repeat protein | LC | ...    96   1e-19
Medtr1g090120.1 | PPR containing plant-like protein | HC | chr1:...    95   2e-19
Medtr8g103480.2 | PPR containing plant-like protein | HC | chr8:...    94   4e-19
Medtr8g103480.1 | PPR containing plant-like protein | HC | chr8:...    94   4e-19
Medtr0308s0020.1 | pentatricopeptide (PPR) repeat protein | LC |...    94   4e-19
Medtr0573s0020.1 | pentatricopeptide (PPR) repeat protein | HC |...    94   5e-19
Medtr0177s0060.1 | pentatricopeptide (PPR) repeat protein | LC |...    94   6e-19
Medtr2g018550.1 | pentatricopeptide (PPR) repeat protein | HC | ...    93   9e-19
Medtr2g030540.1 | PPR containing plant-like protein | HC | chr2:...    93   1e-18
Medtr1g029490.1 | pentatricopeptide (PPR) repeat protein | LC | ...    92   2e-18
Medtr3g115270.1 | PPR containing plant-like protein | HC | chr3:...    91   3e-18
Medtr3g115270.2 | PPR containing plant-like protein | HC | chr3:...    91   3e-18
Medtr6g079460.1 | pentatricopeptide (PPR) repeat protein | LC | ...    91   3e-18
Medtr5g018230.2 | PPR containing plant-like protein | HC | chr5:...    91   5e-18
Medtr5g018230.1 | PPR containing plant-like protein | HC | chr5:...    91   5e-18
Medtr6g079270.1 | pentatricopeptide (PPR) repeat protein | HC | ...    91   5e-18
Medtr7g060720.1 | PPR containing plant-like protein, putative | ...    91   5e-18
Medtr0654s0010.1 | pentatricopeptide (PPR) repeat protein | HC |...    91   5e-18
Medtr6g065560.1 | PPR containing plant-like protein | LC | chr6:...    90   6e-18
Medtr3g088950.1 | pentatricopeptide (PPR) repeat protein, putati...    90   6e-18
Medtr6g077800.1 | pentatricopeptide (PPR) repeat protein | LC | ...    90   7e-18
Medtr3g061020.1 | pentatricopeptide (PPR) repeat protein | HC | ...    90   8e-18
Medtr5g008300.1 | PPR containing plant-like protein | HC | chr5:...    90   8e-18
Medtr6g068820.1 | pentatricopeptide (PPR) repeat protein | HC | ...    90   9e-18
Medtr2g058580.1 | PPR containing plant-like protein | HC | chr2:...    90   9e-18
Medtr7g011520.1 | pentatricopeptide (PPR) repeat protein | LC | ...    90   9e-18
Medtr6g061120.1 | pentatricopeptide (PPR) repeat protein | HC | ...    90   9e-18
Medtr6g068790.1 | pentatricopeptide (PPR) repeat protein | LC | ...    89   1e-17
Medtr2g069680.2 | PPR containing plant-like protein | HC | chr2:...    89   2e-17
Medtr0019s0210.3 | pentatricopeptide (PPR) repeat protein | LC |...    88   2e-17
Medtr0019s0210.2 | pentatricopeptide (PPR) repeat protein | LC |...    88   2e-17
Medtr0019s0210.1 | pentatricopeptide (PPR) repeat protein | LC |...    88   2e-17
Medtr8g039270.1 | PPR containing plant-like protein | HC | chr8:...    88   3e-17
Medtr6g079290.1 | pentatricopeptide (PPR) repeat protein | HC | ...    87   4e-17
Medtr3g100600.1 | PPR containing plant-like protein | HC | chr3:...    87   4e-17
Medtr2g069700.1 | PPR containing plant-like protein | LC | chr2:...    87   4e-17
Medtr2g069680.1 | PPR containing plant-like protein | HC | chr2:...    87   5e-17
Medtr2g094423.1 | PPR containing plant-like protein | LC | chr2:...    87   8e-17
Medtr6g082970.1 | pentatricopeptide (PPR) repeat protein | LC | ...    86   1e-16
Medtr1g114300.1 | PPR containing plant-like protein | HC | chr1:...    86   1e-16
Medtr5g042370.1 | PPR containing plant-like protein | HC | chr5:...    86   1e-16
Medtr3g091460.1 | PPR containing plant-like protein | HC | chr3:...    86   1e-16
Medtr5g094770.1 | PPR containing plant-like protein | HC | chr5:...    85   2e-16
Medtr1g008310.1 | PPR containing plant-like protein | HC | chr1:...    85   2e-16
Medtr6g079430.1 | pentatricopeptide (PPR) repeat protein | HC | ...    84   4e-16
Medtr7g044790.1 | PPR containing plant-like protein | HC | chr7:...    84   5e-16
Medtr1g040725.1 | acylamino-acid-releasing enzyme, putative | HC...    84   5e-16
Medtr8g091670.1 | PPR containing plant-like protein | HC | chr8:...    83   8e-16
Medtr1g055295.1 | PPR containing plant-like protein | HC | chr1:...    83   8e-16
Medtr4g107180.1 | pentatricopeptide (PPR) repeat protein | LC | ...    83   9e-16
Medtr1g114190.1 | pentatricopeptide (PPR) repeat protein, putati...    83   1e-15
Medtr0572s0010.1 | pentatricopeptide (PPR) repeat protein | LC |...    83   1e-15
Medtr6g046300.1 | pentatricopeptide (PPR) repeat protein | LC | ...    82   1e-15
Medtr2g026645.1 | pentatricopeptide (PPR) repeat protein | HC | ...    82   2e-15
Medtr0014s0260.1 | pentatricopeptide (PPR) repeat protein | LC |...    82   2e-15
Medtr6g445320.1 | pentatricopeptide (PPR) repeat protein | LC | ...    82   3e-15
Medtr3g045420.1 | PPR containing plant-like protein | HC | chr3:...    82   3e-15
Medtr0652s0010.1 | pentatricopeptide (PPR) repeat protein | LC |...    81   4e-15
Medtr2g026635.1 | pentatricopeptide (PPR) repeat protein | HC | ...    81   4e-15
Medtr7g090340.1 | PPR containing plant-like protein | HC | chr7:...    80   5e-15
Medtr1g016220.1 | PPR containing plant-like protein | LC | chr1:...    80   5e-15
Medtr0051s0090.1 | pentatricopeptide (PPR) repeat protein | LC |...    80   6e-15
Medtr2g026600.1 | PPR containing plant protein | LC | chr2:96505...    80   9e-15
Medtr7g095300.1 | pentatricopeptide (PPR) repeat protein | LC | ...    80   9e-15
Medtr8g005870.1 | PPR containing plant-like protein | HC | chr8:...    80   9e-15
Medtr1g016213.1 | pentatricopeptide (PPR) repeat protein | LC | ...    79   1e-14
Medtr5g045490.1 | PPR containing plant-like protein | HC | chr5:...    79   1e-14
Medtr4g040410.1 | PPR containing plant-like protein | HC | chr4:...    79   1e-14
Medtr1g113010.1 | PPR containing plant-like protein | HC | chr1:...    79   1e-14
Medtr3g094280.1 | pentatricopeptide (PPR) repeat protein | LC | ...    79   2e-14
Medtr3g088810.1 | PPR containing plant-like protein | LC | chr3:...    79   2e-14

>Medtr8g106950.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:45164389-45168068 | 20130731
          Length = 766

 Score = 1315 bits (3403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/707 (86%), Positives = 660/707 (93%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           MRNGHCDSAL VFNTMPRRSSVSYNAMISGYLRN++F+LAR+LFD+MP+RDL SWNVMLT
Sbjct: 60  MRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLT 119

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GYVRN RLGDARRLFD MP+KDVVSWN++LSGYAQNGY DEAREVF  MP KN+ISWNGL
Sbjct: 120 GYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGL 179

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           LAAYVHNGRIEEAC LF+SKSDW+LISWNCLMGGFV++K LG AR LFDKM VRD +SWN
Sbjct: 180 LAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWN 239

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
           TMISGYAQ G +SQA+ LFD+SP +DVFTWTAMVSGYVQNGMLDEA+TFFD+MP+KNE+S
Sbjct: 240 TMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS 299

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
           YNAM+AGYVQ+ KMD+ARELFE+MP RN+SSWNTMITGYGQ GDIAQARK FDMMPQRDC
Sbjct: 300 YNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDC 359

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           VSWAAII+GYAQ+GHYEEALNMF+EIK+DGESLNR+TF CALSTCADIAALELGKQIHGQ
Sbjct: 360 VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQ 419

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
            VK GY TGCFVGNALL MYFKCGSI EAND FEGIEEKDVVSWNTM+AGYARHGFG+QA
Sbjct: 420 AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQA 479

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
           L VFESMKT GVKPDEITMVGVLSACSH GL+DRGTEYFYSM KDY V P+SKHYTCMID
Sbjct: 480 LTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMID 539

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LLGRAGRLEEAQDL+RNMPF+P AASWGALLGASRIHGNTELGEKAAEMVFKMEP NSGM
Sbjct: 540 LLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGM 599

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRI 600
           YVLLSNLYAASGRW DA  MRS+MRD+GVQKV GYSWVEVQNKIH F+VGDC HPEK+RI
Sbjct: 600 YVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERI 659

Query: 601 YAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRV 660
           YA+LEELDLKMR EGYVS TKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP GRPIRV
Sbjct: 660 YAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRV 719

Query: 661 IKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +KNLRVCEDCH+AIKHISKIVGRLIILRDSHRFHHFNEG CSCGDYW
Sbjct: 720 MKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  269 bits (687), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 237/437 (54%), Gaps = 10/437 (2%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           D++ WN  +S + +NG+ D A  VF  MP ++++S+N +++ Y+ N +   A  LFD   
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
           + +L SWN ++ G+V+   LG AR+LFD M  +DVVSWN+++SGYAQ+G + +A+ +FD 
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDN 167

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELF 261
            P ++  +W  +++ YV NG ++EA   F+     + IS+N ++ G+V+  K+  AR LF
Sbjct: 168 MPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLF 227

Query: 262 EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
           + MP R+  SWNTMI+GY Q G ++QAR+LFD  P RD  +W A++SGY Q G  +EA  
Sbjct: 228 DKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKT 287

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
            F E+    E    +  +  + T     A EL + +  + + +         N ++  Y 
Sbjct: 288 FFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISS--------WNTMITGYG 339

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
           + G I +A   F+ + ++D VSW  +IAGYA+ G  ++AL +F  +K  G   +  T   
Sbjct: 340 QIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGC 399

Query: 442 VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
            LS C+    ++ G +  +                 ++ +  + G ++EA D    +  E
Sbjct: 400 ALSTCADIAALELGKQ-IHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE-E 457

Query: 502 PPAASWGALLGASRIHG 518
               SW  +L     HG
Sbjct: 458 KDVVSWNTMLAGYARHG 474


>Medtr8g106910.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:45147837-45154874 | 20130731
          Length = 787

 Score = 1131 bits (2926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/680 (76%), Positives = 597/680 (87%)

Query: 28  ISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWN 87
           IS ++RN    LA  +FD MP ++L SWN+MLTGYV+NRRL DAR LFD MPQKD VSWN
Sbjct: 55  ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWN 114

Query: 88  AMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELIS 147
            MLSGY ++G  DEA+ VF  MP+K++ISWNGLLA YV NGR+EEA RLF+SK DWELIS
Sbjct: 115 VMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFESKVDWELIS 174

Query: 148 WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV 207
           WNCLMGG+VKRKMLG AR+LFD M VR+ +SWNTMISGYA+DGD+ QA+ LF++SP +DV
Sbjct: 175 WNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDV 234

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
           FTWTAMV  YVQ+GMLDEAR  FD+MP K E++YN M+AGYVQ  KMDMARELFEAMP R
Sbjct: 235 FTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPCR 294

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           NV SWNT+I+GYGQNGDIAQAR+LFDMM QRDCVSWAAII+GYAQTGHYE+ ++M +++K
Sbjct: 295 NVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMK 354

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           RDG+SLNRSTF CALSTCA +AAL LGKQ+HGQ VKTGY+ GC VGNALL MY KCGSIG
Sbjct: 355 RDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIG 414

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA DVFE ++ KD++SWNTM+AGYARHGFG+QAL+VF+SMKT G KPDEITMVGVL ACS
Sbjct: 415 EAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEITMVGVLLACS 474

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H GL DRGTEYFYSM+KDY +TP+SKHY CMIDLLGRAG LEEA +LMRNMPFEP AA+W
Sbjct: 475 HTGLTDRGTEYFYSMSKDYGITPNSKHYNCMIDLLGRAGLLEEAHNLMRNMPFEPDAATW 534

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
           GALLGASRIHGN ELGEKAAEMVF MEP+N+GMYVLLSNLYA  G+W D G +R +MR +
Sbjct: 535 GALLGASRIHGNAELGEKAAEMVFNMEPNNAGMYVLLSNLYATLGKWVDVGKLRLKMRQL 594

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV 627
           G+QK+ GYSWVEVQNKIHKFTVGDCFHPEKDRIYA+LEE+DLKM+ EG+VS  KLVLHDV
Sbjct: 595 GIQKIPGYSWVEVQNKIHKFTVGDCFHPEKDRIYAYLEEIDLKMKHEGHVSLVKLVLHDV 654

Query: 628 EEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIIL 687
           EEEEK+ MLKYHSEKLAVAFGILTIPAGRPIRV+KNLRVCEDCHN IK+ISKIVGRLIIL
Sbjct: 655 EEEEKKRMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCEDCHNVIKYISKIVGRLIIL 714

Query: 688 RDSHRFHHFNEGICSCGDYW 707
           RDSHRFH+ +EGICSCGDYW
Sbjct: 715 RDSHRFHYVSEGICSCGDYW 734



 Score =  263 bits (672), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 262/520 (50%), Gaps = 82/520 (15%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           MRNGHC  ALRVF++MP ++  S+N M++GY++N R   AR+LFD MPQ+D VSWNVML+
Sbjct: 59  MRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFDLMPQKDAVSWNVMLS 118

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFY------------- 107
           GYVR+  + +A+ +FD+MP KD +SWN +L+ Y QNG  +EAR +F              
Sbjct: 119 GYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRLFESKVDWELISWNCL 178

Query: 108 ------------------QMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWN 149
                              MP +NAISWN +++ Y  +G + +A RLF+     ++ +W 
Sbjct: 179 MGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQARRLFEESPVRDVFTWT 238

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFT 209
            ++  +V+  ML  AR++FD+M  +  +++N MI+GY Q   M  A+ LF+  P ++V +
Sbjct: 239 AMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMDMARELFEAMPCRNVGS 298

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM----P 265
           W  ++SGY QNG + +AR  FD M Q++ +S+ A++AGY Q+   +    +   M     
Sbjct: 299 WNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGHYEKVMHMLVKMKRDGK 358

Query: 266 SRNVSSW-----------------------------------NTMITGYGQNGDIAQARK 290
           S N S++                                   N ++  Y + G I +A  
Sbjct: 359 SLNRSTFCCALSTCAGMAALVLGKQVHGQAVKTGYDNGCLVGNALLEMYCKCGSIGEAYD 418

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +F+ M  +D +SW  +++GYA+ G   +AL +F  +K  G   +  T    L  C+    
Sbjct: 419 VFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFKPDEITMVGVLLACSHTGL 478

Query: 351 LELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMI 408
            + G +    + K  G        N ++ +  + G + EA+++   +  E D  +W  ++
Sbjct: 479 TDRGTEYFYSMSKDYGITPNSKHYNCMIDLLGRAGLLEEAHNLMRNMPFEPDAATWGALL 538

Query: 409 AGYARHGFG----KQALMVFESMKTIGVKPDEITMVGVLS 444
                HG      K A MVF       ++P+   M  +LS
Sbjct: 539 GASRIHGNAELGEKAAEMVFN------MEPNNAGMYVLLS 572


>Medtr7g074040.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:27639852-27642151 | 20130731
          Length = 707

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/692 (46%), Positives = 454/692 (65%), Gaps = 4/692 (0%)

Query: 19  RSSVSYNAMISGYLRNARFSLARDLFDK--MPQRDLVSWNVMLTGYVRNRRLGDARRLFD 76
           RS  S  + IS Y R      AR +FD   +PQR + SWN M++ Y  + +  DA  LFD
Sbjct: 17  RSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFD 76

Query: 77  SMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRL 136
            MPQ++ VS+N M+SGY +NG   +AR+VF  MP +N +SW  ++  YV  G +EEA +L
Sbjct: 77  QMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKL 136

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
           F       ++SW  ++GG +K   +  A+KLFD +  +DVV    MI GY Q G + +A+
Sbjct: 137 FWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEAR 196

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM 256
            LFD+   ++VFTWT MVSGY +NG +D AR  F+ MP++NE+S+ AM+ GY QS +M  
Sbjct: 197 ELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKE 256

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           A ELFEAMP + + + N MI  +G  G++ +AR +F+ M +RD  +W A+I  + + G  
Sbjct: 257 AFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLD 316

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
            EAL +F  ++R+G +LN  +    LS CA +A+L+ G+Q+H ++V++ ++   +V + L
Sbjct: 317 LEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVL 376

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           + MY KCG +  A  +F     KDVV WN+MI GY++HG G++AL VF  M + GV+PDE
Sbjct: 377 ITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDE 436

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
           +T +GVLSACS++G +  G E F +M   Y V P  +HY CM+DLLGRAGR++EA +L+ 
Sbjct: 437 VTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVE 496

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD 556
            MP EP A  WGALLGA R H   +L E A E + K+EP N+G YVLLS++YA  GRW D
Sbjct: 497 KMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRD 556

Query: 557 AGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC-FHPEKDRIYAFLEELDLKMRREG 615
              +R ++ +  V K  G SW+EV+ K+H FT GD   HPE+  I   LE+L   +R  G
Sbjct: 557 VEVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAG 615

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           Y      VLHDV+EEEK H L YHSE+LAVA+G+L +P G PIRV+KNLRVC DCH+AIK
Sbjct: 616 YCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 675

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            I+K+ GR IILRD++RFHHF +G CSC D+W
Sbjct: 676 LIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  223 bits (569), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 234/426 (54%), Gaps = 14/426 (3%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++NG    A +VF+ MP R+ VS+ +M+ GY++      A  LF +MP+R++VSW VM+ 
Sbjct: 94  VKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIG 153

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           G ++  R+ DA++LFD +P+KDVV    M+ GY Q G  DEARE+F +M  +N  +W  +
Sbjct: 154 GLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTM 213

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           ++ Y  NGR++ A +LF+   +   +SW  ++ G+ +   +  A +LF+ M V+ +V+ N
Sbjct: 214 VSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACN 273

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
            MI  +   G+M +A+ +F+    +D  TW AM+  + + G+  EA   F +M Q+  ++
Sbjct: 274 EMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM-QREGVA 332

Query: 241 YN-----AMVAGYVQSNKMDMARE----LFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
            N     ++++       +D  R+    L  +   +++   + +IT Y + GD+ +A+ +
Sbjct: 333 LNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGI 392

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAAL 351
           F+    +D V W ++I+GY+Q G  EEALN+F ++   G   +  TF   LS C+    +
Sbjct: 393 FNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKV 452

Query: 352 ELGKQIHGQVVKTGY--ETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMI 408
           + G +I  + +K  Y  E G      ++ +  + G + EA ++ E +  E D + W  ++
Sbjct: 453 KEGFEIF-EAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511

Query: 409 AGYARH 414
                H
Sbjct: 512 GACRNH 517



 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 168/343 (48%), Gaps = 51/343 (14%)

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQS--PHQDVFTWTAMVSGYVQNGMLDEART 228
           +  R + S  + IS Y + GD+  A+ +FD +  P + + +W AMVS Y ++    +A  
Sbjct: 14  VQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALL 73

Query: 229 FFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQA 288
            FDQMPQ+N +S+N M++GYV++  +  AR++F+ MP RNV SW +M+ GY Q G + +A
Sbjct: 74  LFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
            KLF  MP+R+ VSW  +I G  +    ++A  +F  I                      
Sbjct: 134 EKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIP--------------------- 172

Query: 349 AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMI 408
                             E    V   ++G Y + G + EA ++F+ ++ ++V +W TM+
Sbjct: 173 ------------------EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMV 214

Query: 409 AGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSV 468
           +GYA++G    A  +FE M     + +E++   +L   + +G +    E F +M   + V
Sbjct: 215 SGYAKNGRVDVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV 270

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
             +      MI   G AG +  A+ +   M  E    +W A++
Sbjct: 271 ACNE-----MILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMI 307


>Medtr4g099480.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:41303481-41301142 | 20130731
          Length = 634

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/602 (44%), Positives = 385/602 (63%), Gaps = 1/602 (0%)

Query: 107 YQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRK-MLGAAR 165
           Y   H N I+ N L+A+YV +G I+ A R+F + +     +WN ++G F K+      AR
Sbjct: 33  YDHDHSNVIASNQLIASYVRSGDIDSALRVFHNMTVISTTTWNTILGAFAKKHGNFERAR 92

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
           +LFDK+   + VS+NTM++ Y     +  A++ FD  P +D  +W  M+SGY Q  M+DE
Sbjct: 93  QLFDKIPEPNTVSYNTMLACYLHHFGIHNARDFFDWMPVRDTASWNTMLSGYAQVRMMDE 152

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDI 285
           AR     MP+KN ++++AMV+GYV    +D A E F A P ++V +W  MITGY + G +
Sbjct: 153 ARRLLVAMPEKNCVTWSAMVSGYVACGDLDAAVECFYAAPMKSVITWTAMITGYMKFGRV 212

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
             A  LF  +  +  V+W A+I+GY   G  E  L +F  +   G   N  + +  L  C
Sbjct: 213 GLAEMLFWKLSLKTLVTWNAMIAGYVDNGRAENGLKLFKTMLETGVKPNALSLTSVLLGC 272

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
           +D++AL+ GKQ+H  V K+          +L+ MY KCG + ++ D+F  I  KDVV+WN
Sbjct: 273 SDLSALQTGKQVHQLVCKSPLSRDTTAVTSLISMYSKCGDLKDSWDLFVQIPRKDVVTWN 332

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD 465
            MI+GYA+HG G++AL +F+ MK   +KPD IT V VL AC+HAG++D GT+YF SM K+
Sbjct: 333 AMISGYAQHGAGEKALHLFDEMKKSEIKPDWITFVAVLLACNHAGMVDLGTKYFNSMVKE 392

Query: 466 YSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEK 525
           + +    +HY CM+DLLGRAGRL EA D++++MPF+P  A +G LLGA RIH +  + E 
Sbjct: 393 FGIKTRPEHYGCMVDLLGRAGRLSEAVDMVKSMPFKPHPAIFGTLLGACRIHKSMHMAEF 452

Query: 526 AAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIH 585
           AA+ + +++P ++  YV L+N+YAA  +W     +R  M++  V K  GYSW+E+ N +H
Sbjct: 453 AAKNLLELDPTSATGYVQLANVYAAQSKWEHVARVRKSMKENNVVKPPGYSWIEINNAVH 512

Query: 586 KFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 645
           +F   D  HPE   I+  L++L+ KM+  GYV   +  LHDV EE KE +L  HSEKLA+
Sbjct: 513 EFRSNDRLHPELVSIHEKLDKLETKMKLAGYVPDLEFALHDVGEELKEQLLLRHSEKLAI 572

Query: 646 AFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGD 705
           AFG+L +P G PIRV KNLRVC DCH+AIK+IS I GR II+RD+ RFHHF +G+CSC D
Sbjct: 573 AFGLLKVPLGVPIRVFKNLRVCGDCHSAIKYISAIEGREIIVRDTTRFHHFKDGLCSCSD 632

Query: 706 YW 707
           YW
Sbjct: 633 YW 634



 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 205/395 (51%), Gaps = 51/395 (12%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYA-QNGYADEAREVFYQM 109
           ++++ N ++  YVR+  +  A R+F +M      +WN +L  +A ++G  + AR++F ++
Sbjct: 39  NVIASNQLIASYVRSGDIDSALRVFHNMTVISTTTWNTILGAFAKKHGNFERARQLFDKI 98

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
           P  N +S+N +LA Y+H+  I  A   FD     +  SWN ++ G+ + +M+  AR+L  
Sbjct: 99  PEPNTVSYNTMLACYLHHFGIHNARDFFDWMPVRDTASWNTMLSGYAQVRMMDEARRLLV 158

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
            M  ++ V+W+ M+SGY   GD+  A   F  +P + V TWTAM++GY++ G +  A   
Sbjct: 159 AMPEKNCVTWSAMVSGYVACGDLDAAVECFYAAPMKSVITWTAMITGYMKFGRVGLAEML 218

Query: 230 FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM------P------------------ 265
           F ++  K  +++NAM+AGYV + + +   +LF+ M      P                  
Sbjct: 219 FWKLSLKTLVTWNAMIAGYVDNGRAENGLKLFKTMLETGVKPNALSLTSVLLGCSDLSAL 278

Query: 266 ---------------SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGY 310
                          SR+ ++  ++I+ Y + GD+  +  LF  +P++D V+W A+ISGY
Sbjct: 279 QTGKQVHQLVCKSPLSRDTTAVTSLISMYSKCGDLKDSWDLFVQIPRKDVVTWNAMISGY 338

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT-GYET- 368
           AQ G  E+AL++F E+K+     +  TF   L  C     ++LG +    +VK  G +T 
Sbjct: 339 AQHGAGEKALHLFDEMKKSEIKPDWITFVAVLLACNHAGMVDLGTKYFNSMVKEFGIKTR 398

Query: 369 ----GCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
               GC V   LLG   + G + EA D+ + +  K
Sbjct: 399 PEHYGCMVD--LLG---RAGRLSEAVDMVKSMPFK 428



 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 185/371 (49%), Gaps = 49/371 (13%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYL-RNARFSLARDLFDKMPQRDLVSWNVML 59
           +R+G  DSALRVF+ M   S+ ++N ++  +  ++  F  AR LFDK+P+ + VS+N ML
Sbjct: 51  VRSGDIDSALRVFHNMTVISTTTWNTILGAFAKKHGNFERARQLFDKIPEPNTVSYNTML 110

Query: 60  TGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
             Y+ +  + +AR  FD MP +D  SWN MLSGYAQ    DEAR +   MP KN ++W+ 
Sbjct: 111 ACYLHHFGIHNARDFFDWMPVRDTASWNTMLSGYAQVRMMDEARRLLVAMPEKNCVTWSA 170

Query: 120 LLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
           +++ YV  G ++ A   F +     +I+W  ++ G++K   +G A  LF K+ ++ +V+W
Sbjct: 171 MVSGYVACGDLDAAVECFYAAPMKSVITWTAMITGYMKFGRVGLAEMLFWKLSLKTLVTW 230

Query: 180 NTMISGYAQDG--------------------------------DMS------QAKNLFDQ 201
           N MI+GY  +G                                D+S      Q   L  +
Sbjct: 231 NAMIAGYVDNGRAENGLKLFKTMLETGVKPNALSLTSVLLGCSDLSALQTGKQVHQLVCK 290

Query: 202 SP-HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAREL 260
           SP  +D    T+++S Y + G L ++   F Q+P+K+ +++NAM++GY Q    + A  L
Sbjct: 291 SPLSRDTTAVTSLISMYSKCGDLKDSWDLFVQIPRKDVVTWNAMISGYAQHGAGEKALHL 350

Query: 261 FEAMPSRNVSS-WNTMIT---GYGQNGDIAQARKLFDMMPQRDCVS-----WAAIISGYA 311
           F+ M    +   W T +         G +    K F+ M +   +      +  ++    
Sbjct: 351 FDEMKKSEIKPDWITFVAVLLACNHAGMVDLGTKYFNSMVKEFGIKTRPEHYGCMVDLLG 410

Query: 312 QTGHYEEALNM 322
           + G   EA++M
Sbjct: 411 RAGRLSEAVDM 421


>Medtr5g023040.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:9142979-9147043 | 20130731
          Length = 878

 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 260/623 (41%), Positives = 406/623 (65%), Gaps = 1/623 (0%)

Query: 2   RNGHCDSALRVFNTMPRR-SSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           R G  + A  +F  +P +  +  +NAMI+GY +  RF  A  +F+KMP +DLVS+N ML 
Sbjct: 122 RKGMLEKARELFELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLA 181

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GY +N ++G A + F+ M +++VVSWN M++G+  N     A E+F ++P  NA+SW  +
Sbjct: 182 GYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTM 241

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           L  +  +G+I EA +LFD      ++SWN ++  +V+   +  A KLF +   +D VSW 
Sbjct: 242 LCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWT 301

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
           TMI+GY + G + +A+ +++Q P++DV   TA++SG +QNG +DEA   F Q+ +++ I 
Sbjct: 302 TMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAIC 361

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
           +N+M+AGY QS +M  A  LF  MP +N  SWNTMI+GY Q G++ +A ++F+ M  R+ 
Sbjct: 362 WNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNV 421

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           +SW ++I+G+ Q G Y +AL   + + ++G+  ++STF+C+LS+CA++AAL++GKQ+H  
Sbjct: 422 ISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHEL 481

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
           ++K+GY    FV NAL+ MY KCG +  A  VF+ IE  D++SWN++I+GYA +G+  +A
Sbjct: 482 ILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEA 541

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
              FE M + G  PDE+T +G+LSACSHAGL ++G + F  M + +++ P ++HY+C++D
Sbjct: 542 FWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVD 601

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LLGR GRLEEA +++R M  +  A  WG+LL A R+H N ELG+ AA  + ++EPHN+  
Sbjct: 602 LLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASN 661

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRI 600
           Y+ LSN++A +GRW D   +R  MR+    K+ G SW+EVQN+I  F   D      + I
Sbjct: 662 YITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTESI 721

Query: 601 YAFLEELDLKMRREGYVSSTKLV 623
              L  L   MR +  +S  K V
Sbjct: 722 KIILNTLSAHMRDKCNISDMKSV 744



 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 236/480 (49%), Gaps = 57/480 (11%)

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           K+V + N  +    + G  DEA+ VF  + HKN  ++N ++  +  NGR+ +A +LFD  
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD 200
           S   L+SWN ++ G++   M+  A KLFD M  RD  SW  MI+ Y + G + +A+ LF+
Sbjct: 75  SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134

Query: 201 QSPHQ-DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARE 259
             P + D   W AM++GY + G  D+A   F++MP K+ +SYN+M+AGY Q+ KM +A +
Sbjct: 135 LVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMK 194

Query: 260 LFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
            FE M  RNV SWN M+ G+  N D+  A +LF+ +P  + VSW  ++ G+A+ G   EA
Sbjct: 195 FFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEA 254

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
             +F  +                  C ++ +                       NA++  
Sbjct: 255 RKLFDRM-----------------PCKNVVSW----------------------NAMIAA 275

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y +   I EA  +F+    KD VSW TMI GY R G   +A  V+  M    V      M
Sbjct: 276 YVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALM 335

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
            G++      G ID  ++ F  +NK  ++      +  MI    ++GR+ EA +L R MP
Sbjct: 336 SGLI----QNGRIDEASQVFSQLNKRDAIC-----WNSMIAGYCQSGRMSEALNLFRQMP 386

Query: 500 FEPPAASWGALLGASRIHGNTELGE--KAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
            +  A SW  +     I G  + GE  +A E+   M   N   +  L   +  +G + DA
Sbjct: 387 VK-NAVSWNTM-----ISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDA 440



 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 202/393 (51%), Gaps = 24/393 (6%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
           ++V + N  I    + G + +AK +F    H++  T+ +MV+ + +NG + +AR  FD+M
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 234 PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFD 293
            Q+N +S+N M+AGY+ +N ++ A +LF+ M  R+  SW  MIT Y + G + +AR+LF+
Sbjct: 75  SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134

Query: 294 MMPQR-DCVSWAAIISGYAQTGHYEEALNMFIEIK-RDGESLNRSTFSCALSTCADIAAL 351
           ++P + D   W A+I+GYA+ G +++A  +F ++  +D  S N        +    +A  
Sbjct: 135 LVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMK 194

Query: 352 ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGY 411
              +     VV        FV N           +G A ++FE I + + VSW TM+ G+
Sbjct: 195 FFERMAERNVVSWNLMVAGFVNNC---------DLGSAWELFEKIPDPNAVSWVTMLCGF 245

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
           ARHG   +A  +F+ M    V    ++   +++A      ID   + F        V+  
Sbjct: 246 ARHGKIVEARKLFDRMPCKNV----VSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVS-- 299

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVF 531
              +T MI+   R G+L+EA+++   MP++  AA   AL+     +G     ++A+++  
Sbjct: 300 ---WTTMINGYVRVGKLDEAREVYNQMPYKDVAAK-TALMSGLIQNGRI---DEASQVFS 352

Query: 532 KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRM 564
           ++   ++  +  +   Y  SGR ++A N+  +M
Sbjct: 353 QLNKRDAICWNSMIAGYCQSGRMSEALNLFRQM 385



 Score =  152 bits (385), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 145/278 (52%), Gaps = 16/278 (5%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +R G  D A  V+N MP +   +  A++SG ++N R   A  +F ++ +RD + WN M+ 
Sbjct: 308 VRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIA 367

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GY ++ R+ +A  LF  MP K+ VSWN M+SGYAQ G  D A E+F  M  +N ISWN L
Sbjct: 368 GYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISWNSL 427

Query: 121 LAAYVHNGRIEEACRLF------DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--- 171
           +  ++ NG   +A +          K D    ++ C +        L   ++L + +   
Sbjct: 428 ITGFLQNGLYLDALKSLVLMGQEGKKPDQS--TFACSLSSCANLAALQVGKQLHELILKS 485

Query: 172 -HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
            ++ D+   N +I+ YA+ G +  A+ +F      D+ +W +++SGY  NG  +EA   F
Sbjct: 486 GYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAF 545

Query: 231 DQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM 264
           +QM  +    +E+++  M++    +   +   +LF+ M
Sbjct: 546 EQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLFKCM 583



 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 180/383 (46%), Gaps = 66/383 (17%)

Query: 192 MSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS 251
           + Q+KN+F+Q+           +    + G +DEA+  F  +  KN  +YN+MV  + ++
Sbjct: 11  LEQSKNVFNQNKK---------IIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKN 61

Query: 252 NKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYA 311
            ++  AR+LF+ M  RN+ SWNTMI GY  N  + +A KLFD+M +RD  SWA +I+ Y 
Sbjct: 62  GRVSDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYT 121

Query: 312 QTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCF 371
           + G  E+A  +F                                    ++V    +T C+
Sbjct: 122 RKGMLEKARELF------------------------------------ELVPDKLDTACW 145

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG 431
             NA++  Y K G   +A  VFE +  KD+VS+N+M+AGY ++G    A+  FE M    
Sbjct: 146 --NAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERN 203

Query: 432 VKPDEITMVGVLSACSHAGLIDRGTEY-FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           V    + + G ++ C      D G+ +  +    D    P++  +  M+    R G++ E
Sbjct: 204 VVSWNLMVAGFVNNC------DLGSAWELFEKIPD----PNAVSWVTMLCGFARHGKIVE 253

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM-YVLLSNLYA 549
           A+ L   MP +    SW A++ A       +L    A  +FK  P+   + +  + N Y 
Sbjct: 254 ARKLFDRMPCK-NVVSWNAMIAAYV----QDLQIDEAVKLFKETPYKDCVSWTTMINGYV 308

Query: 550 ASGRWADAGNMRSRM--RDVGVQ 570
             G+  +A  + ++M  +DV  +
Sbjct: 309 RVGKLDEAREVYNQMPYKDVAAK 331


>Medtr8g065730.2 | PPR containing plant-like protein | HC |
           chr8:27332922-27335168 | 20130731
          Length = 748

 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/715 (38%), Positives = 436/715 (60%), Gaps = 20/715 (2%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +  T+P   +   N +IS Y +      A  +FD+MP  +L SWN +L+ Y +  R+ + 
Sbjct: 35  IIKTLPYPETFLLNNLISSYAKLGSIPYASKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 94

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK------NAISWNGLLAAYV 125
             LFD+MP++D VSWN+++SGYA  G   ++ + +  M         N I+++ LL    
Sbjct: 95  EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSINLNRITFSTLLILAS 154

Query: 126 HNGRIEEACRLFDSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
             G ++   ++      +  +S+    + L+  + K  M+  ARK+FD++  ++VV +NT
Sbjct: 155 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKN 237
           +I G  + G +  +K LF +   +D  +WT+M++G+ QNG+  +A   F +M     Q +
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 274

Query: 238 EISYNAMVAG-----YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           + ++ +++        +Q  K   A  +       N+   + ++  Y +  +I  A  +F
Sbjct: 275 QYTFGSVLTACGGVMALQEGKQVHAY-IIRTDYKDNIFVASALVEMYCKCKNIKSAEAVF 333

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M  ++ VSW A++ GY Q G+ EEA+  F ++++ G   +  T    +S+CA++A+LE
Sbjct: 334 KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLE 393

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G Q H + + +G  +   V NAL+ +Y KCGSI +++ +F  I  KD V+W  +++GYA
Sbjct: 394 EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 453

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           + G   + + +FESM   G+KPD++T +GVLSACS AGL+++G + F SM  ++ + P  
Sbjct: 454 QFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQ 513

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            HYTCMIDL  RAGR+EEA++ +  MPF P A SW  LL + R +GN ++G+ AAE + +
Sbjct: 514 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLME 573

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           ++PHN+  YVLLS++YAA G+W +   +R  MRD G++K  G SW++ +N++H F+  D 
Sbjct: 574 LDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 633

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
            +P  D+IY+ LE+L+ KM +EGYV     VLHDV + EK  ML +HSEKLA+AFG+L I
Sbjct: 634 SNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFI 693

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           P G PIRV+KNLRVC DCHNA K+ISKI  R I++RD+ RFH F +G CSCGD+W
Sbjct: 694 PPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 220/518 (42%), Gaps = 109/518 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A +VF+ MP  +  S+N ++S Y +  R S    LFD MP+RD VSWN +++GY 
Sbjct: 58  GSIPYASKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 117

Query: 64  RNRRLGDARRLFDSMPQKD----------------------------------------- 82
               +  + + ++ M + D                                         
Sbjct: 118 GCGLIYQSVKAYNLMLKNDGSINLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSY 177

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
           V   + ++  Y++ G    AR+VF ++P KN + +N L+   +  GR+E++ RLF    +
Sbjct: 178 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 237

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHVR---------------------------- 174
            + ISW  ++ GF +  +   A  +F +M +                             
Sbjct: 238 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297

Query: 175 -----------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                      ++   + ++  Y +  ++  A+ +F +   ++V +WTAM+ GY QNG  
Sbjct: 298 HAYIIRTDYKDNIFVASALVEMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 357

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM----------ARELFEAMPSRNVSSWN 273
           +EA   F  M QK  I  +    G V S+  ++          AR L   + S  ++  N
Sbjct: 358 EEAVKTFSDM-QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSN 415

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
            ++T YG+ G I  + +LF+ +  +D V+W A++SGYAQ G   E + +F  +   G   
Sbjct: 416 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 475

Query: 334 NRSTFSCALSTCADIAALELGKQI-------HGQVVKTGYETGCFVGNALLGMYFKCGSI 386
           ++ TF   LS C+    +E G QI       HG V    + T       ++ ++ + G I
Sbjct: 476 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT------CMIDLFSRAGRI 529

Query: 387 GEANDVFEGIE-EKDVVSWNTMIAG---YARHGFGKQA 420
            EA +    +    D +SW T+++    Y     GK A
Sbjct: 530 EEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 64/392 (16%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWN 56
           MR G  + + R+F  M  R S+S+ +MI+G+ +N     A D+F +M     Q D  ++ 
Sbjct: 220 MRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFG 279

Query: 57  VMLTG-----------------------------------YVRNRRLGDARRLFDSMPQK 81
            +LT                                    Y + + +  A  +F  M  K
Sbjct: 280 SVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVEMYCKCKNIKSAEAVFKKMTCK 339

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLF 137
           +VVSW AML GY QNGY++EA + F  M       +  +   ++++  +   +EE  +  
Sbjct: 340 NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFH 399

Query: 138 DSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
                  LIS+    N L+  + K   +  + +LF+++  +D V+W  ++SGYAQ G  +
Sbjct: 400 ARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKAN 459

Query: 194 QAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAM 244
           +   LF+         D  T+  ++S   + G++++    F+ M  ++ I      Y  M
Sbjct: 460 ETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCM 519

Query: 245 VAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITG---YGQNGDIAQ--ARKLFDMMPQR 298
           +  + ++ +++ AR     MP S +  SW T+++    YG N DI +  A  L ++ P  
Sbjct: 520 IDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYG-NMDIGKWAAEFLMELDPH- 577

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  S+  + S YA  G +EE   +  +++  G
Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLRKDMRDKG 609



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 340 CAL-STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           CAL   C +       K +H  ++KT      F+ N L+  Y K GSI  A+ VF+ +  
Sbjct: 13  CALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYASKVFDQMPH 72

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            ++ SWNT+++ Y++ G   +   +F++M     + D ++   ++S  +  GLI +  + 
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 459 FYSMNK-DYSVTPSSKHYTCMIDLLGRAG 486
           +  M K D S+  +   ++ ++ L  + G
Sbjct: 129 YNLMLKNDGSINLNRITFSTLLILASKRG 157


>Medtr8g065730.1 | PPR containing plant-like protein | HC |
           chr8:27332922-27335168 | 20130731
          Length = 748

 Score =  548 bits (1411), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/715 (38%), Positives = 436/715 (60%), Gaps = 20/715 (2%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +  T+P   +   N +IS Y +      A  +FD+MP  +L SWN +L+ Y +  R+ + 
Sbjct: 35  IIKTLPYPETFLLNNLISSYAKLGSIPYASKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 94

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK------NAISWNGLLAAYV 125
             LFD+MP++D VSWN+++SGYA  G   ++ + +  M         N I+++ LL    
Sbjct: 95  EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSINLNRITFSTLLILAS 154

Query: 126 HNGRIEEACRLFDSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
             G ++   ++      +  +S+    + L+  + K  M+  ARK+FD++  ++VV +NT
Sbjct: 155 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKN 237
           +I G  + G +  +K LF +   +D  +WT+M++G+ QNG+  +A   F +M     Q +
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 274

Query: 238 EISYNAMVAG-----YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           + ++ +++        +Q  K   A  +       N+   + ++  Y +  +I  A  +F
Sbjct: 275 QYTFGSVLTACGGVMALQEGKQVHAY-IIRTDYKDNIFVASALVEMYCKCKNIKSAEAVF 333

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M  ++ VSW A++ GY Q G+ EEA+  F ++++ G   +  T    +S+CA++A+LE
Sbjct: 334 KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLE 393

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G Q H + + +G  +   V NAL+ +Y KCGSI +++ +F  I  KD V+W  +++GYA
Sbjct: 394 EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 453

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           + G   + + +FESM   G+KPD++T +GVLSACS AGL+++G + F SM  ++ + P  
Sbjct: 454 QFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQ 513

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            HYTCMIDL  RAGR+EEA++ +  MPF P A SW  LL + R +GN ++G+ AAE + +
Sbjct: 514 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLME 573

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           ++PHN+  YVLLS++YAA G+W +   +R  MRD G++K  G SW++ +N++H F+  D 
Sbjct: 574 LDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 633

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
            +P  D+IY+ LE+L+ KM +EGYV     VLHDV + EK  ML +HSEKLA+AFG+L I
Sbjct: 634 SNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFI 693

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           P G PIRV+KNLRVC DCHNA K+ISKI  R I++RD+ RFH F +G CSCGD+W
Sbjct: 694 PPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 220/518 (42%), Gaps = 109/518 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A +VF+ MP  +  S+N ++S Y +  R S    LFD MP+RD VSWN +++GY 
Sbjct: 58  GSIPYASKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 117

Query: 64  RNRRLGDARRLFDSMPQKD----------------------------------------- 82
               +  + + ++ M + D                                         
Sbjct: 118 GCGLIYQSVKAYNLMLKNDGSINLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSY 177

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
           V   + ++  Y++ G    AR+VF ++P KN + +N L+   +  GR+E++ RLF    +
Sbjct: 178 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 237

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHVR---------------------------- 174
            + ISW  ++ GF +  +   A  +F +M +                             
Sbjct: 238 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297

Query: 175 -----------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                      ++   + ++  Y +  ++  A+ +F +   ++V +WTAM+ GY QNG  
Sbjct: 298 HAYIIRTDYKDNIFVASALVEMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 357

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM----------ARELFEAMPSRNVSSWN 273
           +EA   F  M QK  I  +    G V S+  ++          AR L   + S  ++  N
Sbjct: 358 EEAVKTFSDM-QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSN 415

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
            ++T YG+ G I  + +LF+ +  +D V+W A++SGYAQ G   E + +F  +   G   
Sbjct: 416 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 475

Query: 334 NRSTFSCALSTCADIAALELGKQI-------HGQVVKTGYETGCFVGNALLGMYFKCGSI 386
           ++ TF   LS C+    +E G QI       HG V    + T       ++ ++ + G I
Sbjct: 476 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT------CMIDLFSRAGRI 529

Query: 387 GEANDVFEGIE-EKDVVSWNTMIAG---YARHGFGKQA 420
            EA +    +    D +SW T+++    Y     GK A
Sbjct: 530 EEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 64/392 (16%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWN 56
           MR G  + + R+F  M  R S+S+ +MI+G+ +N     A D+F +M     Q D  ++ 
Sbjct: 220 MRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFG 279

Query: 57  VMLTG-----------------------------------YVRNRRLGDARRLFDSMPQK 81
            +LT                                    Y + + +  A  +F  M  K
Sbjct: 280 SVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVEMYCKCKNIKSAEAVFKKMTCK 339

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLF 137
           +VVSW AML GY QNGY++EA + F  M       +  +   ++++  +   +EE  +  
Sbjct: 340 NVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFH 399

Query: 138 DSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
                  LIS+    N L+  + K   +  + +LF+++  +D V+W  ++SGYAQ G  +
Sbjct: 400 ARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKAN 459

Query: 194 QAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAM 244
           +   LF+         D  T+  ++S   + G++++    F+ M  ++ I      Y  M
Sbjct: 460 ETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCM 519

Query: 245 VAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITG---YGQNGDIAQ--ARKLFDMMPQR 298
           +  + ++ +++ AR     MP S +  SW T+++    YG N DI +  A  L ++ P  
Sbjct: 520 IDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYG-NMDIGKWAAEFLMELDPH- 577

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  S+  + S YA  G +EE   +  +++  G
Sbjct: 578 NTASYVLLSSVYAAKGKWEEVARLRKDMRDKG 609



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 340 CAL-STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           CAL   C +       K +H  ++KT      F+ N L+  Y K GSI  A+ VF+ +  
Sbjct: 13  CALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYASKVFDQMPH 72

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            ++ SWNT+++ Y++ G   +   +F++M     + D ++   ++S  +  GLI +  + 
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 459 FYSMNK-DYSVTPSSKHYTCMIDLLGRAG 486
           +  M K D S+  +   ++ ++ L  + G
Sbjct: 129 YNLMLKNDGSINLNRITFSTLLILASKRG 157


>Medtr1g073300.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:32525227-32527614 | 20130731
          Length = 795

 Score =  546 bits (1406), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/752 (37%), Positives = 432/752 (57%), Gaps = 69/752 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ--KD 82
           N +I+ Y +++  + AR LFDK+P+ D+V+   +L+ Y  +  +  A++LF++ P   +D
Sbjct: 44  NRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRD 103

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAY------------VH 126
            VS+NAM++ Y+       A  +F QM       +  +++ +L+A             +H
Sbjct: 104 TVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLH 163

Query: 127 NGRIEEACRLFDSKSDWELISWNCLMGGFVKR--KMLGAARKLFDKMHVRDVV--SWNTM 182
              I+    L  S ++  L  + C     + +  +++ +ARK+FD+     +   SW TM
Sbjct: 164 CEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTM 223

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNE 238
           I+GY ++ D+  A+ L D   +     W AM+SGYV+ G+ +EA   F +M     Q++E
Sbjct: 224 IAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDE 283

Query: 239 ISY-------------------------------------------NAMVAGYVQSNKMD 255
            +Y                                           NA++  Y + ++M 
Sbjct: 284 YTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMI 343

Query: 256 MARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
            AR +F+ MP R++ SWN +++GY     I +A  +F  MP+R+ ++W  +ISG AQ G 
Sbjct: 344 EARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGF 403

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
            EE L +F ++K +G       F+ A++ C+ + +L+ G+QIH QV++ G+++G   GNA
Sbjct: 404 GEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNA 463

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY +CG +  A  VF  +   D VSWN MIA  A+HG G +A+ +FE M    + PD
Sbjct: 464 LITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPD 523

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            IT + +L+AC+HAGLI  G  YF +M   Y +TP   HY  +IDLL RAG   +AQ ++
Sbjct: 524 RITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVI 583

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
           ++MPFE  A  W ALL   RIHGN ELG +AA+ + ++ P   G Y++LSN+YAA G+W 
Sbjct: 584 KSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWD 643

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +   +R  MR+ GV+K  G SWVEV+N +H F V D  HPE   +Y +L++L  +M++ G
Sbjct: 644 EVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLG 703

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           YV  TK VLHD+E E KEH L  HSEKLAV +GI+ +P G  IRV KNLR+C DCHNA K
Sbjct: 704 YVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFK 763

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +ISK+V R I++RD  RFHHF  G CSCG+YW
Sbjct: 764 YISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/489 (27%), Positives = 224/489 (45%), Gaps = 80/489 (16%)

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD--K 170
           N    N L+  Y  +  I  A +LFD     ++++   L+  +     +  A++LF+   
Sbjct: 39  NTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP 98

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH----QDVFTWTAMVSGYVQNGMLDEA 226
           + +RD VS+N MI+ Y+   D   A NLF Q        D FT+++++S    + + DE 
Sbjct: 99  LTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL--SLIADEE 156

Query: 227 RTFFDQMPQKNEISY---------NAMVAGYV---------QSNKMDMARELFEAMPSRN 268
           R    QM     I           NA+++ YV          S  M  AR++F+  P   
Sbjct: 157 RHC--QMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQ 214

Query: 269 V--SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
           +   SW TMI GY +N D+  AR+L D +     V+W A+ISGY + G YEEA + F  +
Sbjct: 215 IYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRM 274

Query: 327 KRDGESLNRSTFSCALSTCAD----IAALELGKQIHGQVVKTGYETG----CFVGNALLG 378
              G   +  T++  +S C      +     G+Q+HG +++T  E        V NAL+ 
Sbjct: 275 HSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALIT 334

Query: 379 MYFK-------------------------------CGSIGEANDVFEGIEEKDVVSWNTM 407
            Y K                                  I EAN +F  + E++V++W  M
Sbjct: 335 FYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVM 394

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY---FYSMNK 464
           I+G A++GFG++ L +F  MK+ G++P +    G ++ACS  G +D G +       +  
Sbjct: 395 ISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGH 454

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE 524
           D  ++  +     +I +  R G +E A+ +   MP+   + SW A++ A   HG+   G 
Sbjct: 455 DSGLSAGNA----LITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQHGH---GV 506

Query: 525 KAAEMVFKM 533
           KA E+  +M
Sbjct: 507 KAIELFEQM 515



 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 180/430 (41%), Gaps = 101/430 (23%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSW- 55
           +RN    +A  + + +     V++NAMISGY+R   +  A D F +M     Q D  ++ 
Sbjct: 228 VRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYT 287

Query: 56  ------------------------------------------NVMLTGYVRNRRLGDARR 73
                                                     N ++T Y +  R+ +ARR
Sbjct: 288 SLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARR 347

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEA 133
           +FD MP +D++SWNA+LSGY      +EA  +F +MP +N ++W  +++    NG  EE 
Sbjct: 348 VFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEG 407

Query: 134 CRLFDSKS---------------------------------------DWELISWNCLMGG 154
            +LF+                                          D  L + N L+  
Sbjct: 408 LKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITM 467

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF----TW 210
           + +  ++ +A  +F  M   D VSWN MI+  AQ G   +A  LF+Q   +D+     T+
Sbjct: 468 YSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITF 527

Query: 211 TAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP 265
             +++     G++ E R +FD M  +  I+     Y  ++    ++     A+ + ++MP
Sbjct: 528 LTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMP 587

Query: 266 -SRNVSSWNTMITGYGQNGD----IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
                  W  ++ G   +G+    I  A +L +++P +D  ++  + + YA  G ++E  
Sbjct: 588 FEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDG-TYIILSNMYAALGQWDEVA 646

Query: 321 NMFIEIKRDG 330
            + + ++  G
Sbjct: 647 RVRLLMRERG 656



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 173/419 (41%), Gaps = 91/419 (21%)

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP 265
           + F    +++ Y ++  +  AR  FD++P+ + ++   +++ Y  S  + +A++LF A P
Sbjct: 39  NTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATP 98

Query: 266 --SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
              R+  S+N MIT Y    D                             GH   ALN+F
Sbjct: 99  LTIRDTVSYNAMITAYSHGND-----------------------------GH--AALNLF 127

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQ-IHGQVVKTGYETGCFVGNALLGMYFK 382
           +++KR G   +  TFS  LS  + IA  E   Q +H +V+K G      V NALL  Y  
Sbjct: 128 VQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVC 187

Query: 383 CGS---------IGEANDVFEGIEEKDV-------------------------------- 401
           C S         +  A  VF+   +  +                                
Sbjct: 188 CASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPI 247

Query: 402 -VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA----GLIDRGT 456
            V+WN MI+GY R G  ++A   F  M ++G++ DE T   ++SAC       G+ + G 
Sbjct: 248 DVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGR 307

Query: 457 EYFYSMNKDYSVTPSSKHYT-----CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           +    + +  +V   S H+       +I    +  R+ EA+ +   MP      SW A+L
Sbjct: 308 QVHGYILR--TVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVL 364

Query: 512 GASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
                + N +  E+A  +  +M   N   + ++ +  A +G   +   + ++M+  G++
Sbjct: 365 SG---YVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420


>Medtr8g069550.1 | PPR containing plant-like protein | HC |
           chr8:29180878-29178605 | 20130731
          Length = 757

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/715 (38%), Positives = 435/715 (60%), Gaps = 20/715 (2%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +  T+P   +   N +IS Y +      A  +FD+MP  +L SWN +L+ Y +  R+ + 
Sbjct: 44  IIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 103

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK------NAISWNGLLAAYV 125
             LFD+MP++D VSWN+++SGYA  G   ++ + +  M         N I+++ LL    
Sbjct: 104 EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILAS 163

Query: 126 HNGRIEEACRLFDSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
             G ++   ++      +  +S+    + L+  + K  M+  ARK+FD++  ++VV +NT
Sbjct: 164 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 223

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKN 237
           +I G  + G +  +K LF +   +D  +WT+M++G+ QNG+  +A   F +M     Q +
Sbjct: 224 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 283

Query: 238 EISYNAMVAG-----YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           + ++ +++        +Q  K   A  +       N+   + ++  Y +  +I  A  +F
Sbjct: 284 QYTFGSVLTACGCVMALQEGKQVHAY-IIRTDYKDNIFVASALVVMYCKCKNIKSAEAVF 342

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M  ++ VSW A++ GY Q G+ EEA+  F ++++ G   +  T    +S+CA++A+LE
Sbjct: 343 KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLE 402

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G Q H + + +G  +   V NAL+ +Y KCGSI +++ +F  I  KD V+W  +++GYA
Sbjct: 403 EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 462

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           + G   + + +FESM   G+KPD++T +GVLSACS AGL+++G + F SM  ++ + P  
Sbjct: 463 QFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQ 522

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            HYTCMIDL  RAGR+EEA++ +  MPF P A SW  LL + R +GN ++G+ AAE + +
Sbjct: 523 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLME 582

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           ++PHN+  YVLLS++YAA G+W +   +R  MRD G++K  G SW++ +N++H F+  D 
Sbjct: 583 LDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 642

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
            +P  D+IY+ LE+L+ KM +EGYV     VLHDV + EK  ML +HSEKLA+AFG+L I
Sbjct: 643 SNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFI 702

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           P G PIRV+KNLRVC DCHNA K+ISKI  R I++RD+ RFH F +G CS GD+W
Sbjct: 703 PPGLPIRVVKNLRVCSDCHNATKYISKITHREILVRDTARFHLFKDGTCSYGDFW 757



 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 220/518 (42%), Gaps = 109/518 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A +VF+ MP  +  S+N ++S Y +  R S    LFD MP+RD VSWN +++GY 
Sbjct: 67  GSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 126

Query: 64  RNRRLGDARRLFDSMPQKD----------------------------------------- 82
               +  + + ++ M + D                                         
Sbjct: 127 GCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSY 186

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
           V   + ++  Y++ G    AR+VF ++P KN + +N L+   +  GR+E++ RLF    +
Sbjct: 187 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 246

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHVR---------------------------- 174
            + ISW  ++ GF +  +   A  +F +M +                             
Sbjct: 247 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGCVMALQEGKQV 306

Query: 175 -----------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                      ++   + ++  Y +  ++  A+ +F +   ++V +WTAM+ GY QNG  
Sbjct: 307 HAYIIRTDYKDNIFVASALVVMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 366

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM----------ARELFEAMPSRNVSSWN 273
           +EA   F  M QK  I  +    G V S+  ++          AR L   + S  ++  N
Sbjct: 367 EEAVKTFSDM-QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSN 424

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
            ++T YG+ G I  + +LF+ +  +D V+W A++SGYAQ G   E + +F  +   G   
Sbjct: 425 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 484

Query: 334 NRSTFSCALSTCADIAALELGKQI-------HGQVVKTGYETGCFVGNALLGMYFKCGSI 386
           ++ TF   LS C+    +E G QI       HG V    + T       ++ ++ + G I
Sbjct: 485 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT------CMIDLFSRAGRI 538

Query: 387 GEANDVFEGIE-EKDVVSWNTMIAG---YARHGFGKQA 420
            EA +    +    D +SW T+++    Y     GK A
Sbjct: 539 EEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 576



 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 340 CAL-STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           CAL   C +       K +H  ++KT      F+ N L+  Y K GSI  A  VF+ +  
Sbjct: 22  CALLKLCCETRNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPH 81

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            ++ SWNT+++ Y++ G   +   +F++M     + D ++   ++S  +  GLI +  + 
Sbjct: 82  PNLYSWNTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKA 137

Query: 459 FYSMNKD 465
           +  M K+
Sbjct: 138 YNLMLKN 144


>Medtr8g069550.2 | PPR containing plant-like protein | HC |
           chr8:29180878-29178605 | 20130731
          Length = 757

 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/715 (38%), Positives = 435/715 (60%), Gaps = 20/715 (2%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +  T+P   +   N +IS Y +      A  +FD+MP  +L SWN +L+ Y +  R+ + 
Sbjct: 44  IIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 103

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK------NAISWNGLLAAYV 125
             LFD+MP++D VSWN+++SGYA  G   ++ + +  M         N I+++ LL    
Sbjct: 104 EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILAS 163

Query: 126 HNGRIEEACRLFDSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
             G ++   ++      +  +S+    + L+  + K  M+  ARK+FD++  ++VV +NT
Sbjct: 164 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 223

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKN 237
           +I G  + G +  +K LF +   +D  +WT+M++G+ QNG+  +A   F +M     Q +
Sbjct: 224 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMD 283

Query: 238 EISYNAMVAG-----YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           + ++ +++        +Q  K   A  +       N+   + ++  Y +  +I  A  +F
Sbjct: 284 QYTFGSVLTACGCVMALQEGKQVHAY-IIRTDYKDNIFVASALVVMYCKCKNIKSAEAVF 342

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M  ++ VSW A++ GY Q G+ EEA+  F ++++ G   +  T    +S+CA++A+LE
Sbjct: 343 KKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLE 402

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G Q H + + +G  +   V NAL+ +Y KCGSI +++ +F  I  KD V+W  +++GYA
Sbjct: 403 EGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYA 462

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           + G   + + +FESM   G+KPD++T +GVLSACS AGL+++G + F SM  ++ + P  
Sbjct: 463 QFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQ 522

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            HYTCMIDL  RAGR+EEA++ +  MPF P A SW  LL + R +GN ++G+ AAE + +
Sbjct: 523 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLME 582

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           ++PHN+  YVLLS++YAA G+W +   +R  MRD G++K  G SW++ +N++H F+  D 
Sbjct: 583 LDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 642

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
            +P  D+IY+ LE+L+ KM +EGYV     VLHDV + EK  ML +HSEKLA+AFG+L I
Sbjct: 643 SNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFI 702

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           P G PIRV+KNLRVC DCHNA K+ISKI  R I++RD+ RFH F +G CS GD+W
Sbjct: 703 PPGLPIRVVKNLRVCSDCHNATKYISKITHREILVRDTARFHLFKDGTCSYGDFW 757



 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 220/518 (42%), Gaps = 109/518 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A +VF+ MP  +  S+N ++S Y +  R S    LFD MP+RD VSWN +++GY 
Sbjct: 67  GSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 126

Query: 64  RNRRLGDARRLFDSMPQKD----------------------------------------- 82
               +  + + ++ M + D                                         
Sbjct: 127 GCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSY 186

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
           V   + ++  Y++ G    AR+VF ++P KN + +N L+   +  GR+E++ RLF    +
Sbjct: 187 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 246

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHVR---------------------------- 174
            + ISW  ++ GF +  +   A  +F +M +                             
Sbjct: 247 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGCVMALQEGKQV 306

Query: 175 -----------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                      ++   + ++  Y +  ++  A+ +F +   ++V +WTAM+ GY QNG  
Sbjct: 307 HAYIIRTDYKDNIFVASALVVMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 366

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM----------ARELFEAMPSRNVSSWN 273
           +EA   F  M QK  I  +    G V S+  ++          AR L   + S  ++  N
Sbjct: 367 EEAVKTFSDM-QKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISF-ITVSN 424

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
            ++T YG+ G I  + +LF+ +  +D V+W A++SGYAQ G   E + +F  +   G   
Sbjct: 425 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 484

Query: 334 NRSTFSCALSTCADIAALELGKQI-------HGQVVKTGYETGCFVGNALLGMYFKCGSI 386
           ++ TF   LS C+    +E G QI       HG V    + T       ++ ++ + G I
Sbjct: 485 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYT------CMIDLFSRAGRI 538

Query: 387 GEANDVFEGIE-EKDVVSWNTMIAG---YARHGFGKQA 420
            EA +    +    D +SW T+++    Y     GK A
Sbjct: 539 EEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 576



 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 340 CAL-STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           CAL   C +       K +H  ++KT      F+ N L+  Y K GSI  A  VF+ +  
Sbjct: 22  CALLKLCCETRNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPH 81

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            ++ SWNT+++ Y++ G   +   +F++M     + D ++   ++S  +  GLI +  + 
Sbjct: 82  PNLYSWNTILSAYSKLGRVSEMEYLFDAMP----RRDGVSWNSLISGYAGCGLIYQSVKA 137

Query: 459 FYSMNKD 465
           +  M K+
Sbjct: 138 YNLMLKN 144


>Medtr1g103840.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:46998568-47001126 | 20130731
          Length = 782

 Score =  540 bits (1390), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/734 (37%), Positives = 420/734 (57%), Gaps = 51/734 (6%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +++ Y + A F+ A  LF +MPQR   SWN +L+ Y +   +  ARRLFD +P+ D V
Sbjct: 49  NNLLNFYSKTASFNDAHRLFSEMPQRTTFSWNTLLSSYAKGGNIETARRLFDDIPEPDSV 108

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAAYVHNGRIEEACRLFDSK 140
           SW  M+ GY Q G  + A   F QM     +    ++  +LA+ V  G ++   ++    
Sbjct: 109 SWTTMIVGYNQMGRFNTAIHTFQQMISDGILPTQFTFTNVLASCVATGSLDIGKKVHSFV 168

Query: 141 SDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
               L       N L+  +VK       + +FD+M +RD  +WN MIS + Q G    A 
Sbjct: 169 VKLGLSGVVPVANSLLNMYVKSGDSLRVKAVFDRMRLRDKSTWNIMISMHMQSGRFDVAL 228

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM-------PQKNEISY-------- 241
            LFDQ   +D+ +W ++++GY   G   +A   F  M       P K  +          
Sbjct: 229 ALFDQMTDRDIISWNSIIAGYCHQGYDSKALETFSDMFRSSSLKPDKFTLGSVLSACANL 288

Query: 242 -------------------------NAMVAGYVQSNKMDMARELFEAMPSRNVS--SWNT 274
                                    NA+++ Y +S  +++AR + E   + N++  ++ +
Sbjct: 289 ESLKLGKQIHAYIVRADIDISGAVGNALISMYAKSGAVEVARTIVELRGTSNINVIAFTS 348

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           ++ GY + GD+  AR++FD +  RD V+W A+I GYAQ    ++AL +F  +  +G   N
Sbjct: 349 LLNGYVKIGDVNPAREIFDSLKCRDVVAWTAMIVGYAQNSLLKDALELFRLMISEGPRPN 408

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
             T +  LS  + +A+L+ GKQ+H   ++    +   VGNAL+ MY K G I +A  VF 
Sbjct: 409 SYTLAAVLSVFSSLASLDHGKQLHAIAIRLKEVSSVSVGNALITMYSKSGCIKDARKVFN 468

Query: 395 GI-EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
            I  E+D ++W +MI   A+HG G +A+ +FE M    +KPD IT VGVLSAC+H GL++
Sbjct: 469 QICTERDTLTWTSMIIALAQHGLGNEAIELFEDMLKFNLKPDHITYVGVLSACTHVGLVE 528

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
           +G  YF  M   + + P+  HY CMIDL GRAG +EEA + ++ MP EP   +WG+LL A
Sbjct: 529 QGKRYFNLMKNVHHIEPTHSHYACMIDLFGRAGLIEEAYNFIKTMPIEPDGIAWGSLLSA 588

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            R+H N +L + AAE +  ++P+NSG Y  L+N ++A G W +A  +R  MRD  V+K  
Sbjct: 589 CRVHKNVDLAKVAAEKLLLIDPNNSGAYSALANTHSACGEWEEAAKVRKLMRDREVKKEQ 648

Query: 574 GYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKE 633
           G+SWV++QNK+H F V D  HP++D IY  + ++  ++++ G+   T  VLHD+++E KE
Sbjct: 649 GFSWVQIQNKVHIFGVEDALHPQRDAIYRMISKIWKEIKKIGFNPDTDSVLHDLDQEVKE 708

Query: 634 HMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRF 693
            +L +HSEKLA+AF ++  P    +R++KNLRVC DCH+AIK+IS +VGR II+RD+ RF
Sbjct: 709 QILSHHSEKLAIAFALINSPGYTTLRIMKNLRVCNDCHSAIKYISMLVGREIIVRDATRF 768

Query: 694 HHFNEGICSCGDYW 707
           HHF +G CSC DYW
Sbjct: 769 HHFKDGSCSCRDYW 782



 Score =  201 bits (510), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/474 (29%), Positives = 225/474 (47%), Gaps = 55/474 (11%)

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
           H +    N LL  Y       +A RLF         SWN L+  + K   +  AR+LFD 
Sbjct: 42  HLSVFLMNNLLNFYSKTASFNDAHRLFSEMPQRTTFSWNTLLSSYAKGGNIETARRLFDD 101

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQS------PHQDVFTWTAMVSGYVQNGMLD 224
           +   D VSW TMI GY Q G  + A + F Q       P Q  FT+T +++  V  G LD
Sbjct: 102 IPEPDSVSWTTMIVGYNQMGRFNTAIHTFQQMISDGILPTQ--FTFTNVLASCVATGSLD 159

Query: 225 ---EARTFFDQMPQKNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYG 280
              +  +F  ++     +   N+++  YV+S      + +F+ M  R+ S+WN MI+ + 
Sbjct: 160 IGKKVHSFVVKLGLSGVVPVANSLLNMYVKSGDSLRVKAVFDRMRLRDKSTWNIMISMHM 219

Query: 281 QNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE-SLNRSTFS 339
           Q+G    A  LFD M  RD +SW +II+GY   G+  +AL  F ++ R      ++ T  
Sbjct: 220 QSGRFDVALALFDQMTDRDIISWNSIIAGYCHQGYDSKALETFSDMFRSSSLKPDKFTLG 279

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS-------------- 385
             LS CA++ +L+LGKQIH  +V+   +    VGNAL+ MY K G+              
Sbjct: 280 SVLSACANLESLKLGKQIHAYIVRADIDISGAVGNALISMYAKSGAVEVARTIVELRGTS 339

Query: 386 ----------------IGEAN---DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFES 426
                           IG+ N   ++F+ ++ +DVV+W  MI GYA++   K AL +F  
Sbjct: 340 NINVIAFTSLLNGYVKIGDVNPAREIFDSLKCRDVVAWTAMIVGYAQNSLLKDALELFRL 399

Query: 427 MKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAG 486
           M + G +P+  T+  VLS  S    +D G +  +++        S      +I +  ++G
Sbjct: 400 MISEGPRPNSYTLAAVLSVFSSLASLDHGKQ-LHAIAIRLKEVSSVSVGNALITMYSKSG 458

Query: 487 RLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMV-----FKMEP 535
            +++A+ +   +  E    +W +++ A   HG   LG +A E+      F ++P
Sbjct: 459 CIKDARKVFNQICTERDTLTWTSMIIALAQHG---LGNEAIELFEDMLKFNLKP 509



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 161/372 (43%), Gaps = 65/372 (17%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-----PQRDLVSW 55
           M++G  D AL +F+ M  R  +S+N++I+GY      S A + F  M      + D  + 
Sbjct: 219 MQSGRFDVALALFDQMTDRDIISWNSIIAGYCHQGYDSKALETFSDMFRSSSLKPDKFTL 278

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREV--FYQM 109
             +L+       L   +++   + + D+       NA++S YA++G  + AR +      
Sbjct: 279 GSVLSACANLESLKLGKQIHAYIVRADIDISGAVGNALISMYAKSGAVEVARTIVELRGT 338

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
            + N I++  LL  YV  G +  A  +FDS    ++++W  ++ G+ +  +L  A +LF 
Sbjct: 339 SNINVIAFTSLLNGYVKIGDVNPAREIFDSLKCRDVVAWTAMIVGYAQNSLLKDALELFR 398

Query: 170 KM---------------------------------------HVRDVVSWNTMISGYAQDG 190
            M                                        V  V   N +I+ Y++ G
Sbjct: 399 LMISEGPRPNSYTLAAVLSVFSSLASLDHGKQLHAIAIRLKEVSSVSVGNALITMYSKSG 458

Query: 191 DMSQAKNLFDQ-SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMV 245
            +  A+ +F+Q    +D  TWT+M+    Q+G+ +EA   F+ M + N     I+Y  ++
Sbjct: 459 CIKDARKVFNQICTERDTLTWTSMIIALAQHGLGNEAIELFEDMLKFNLKPDHITYVGVL 518

Query: 246 AGYVQSNKMDMARELFEAMPSRNV-------SSWNTMITGYGQNGDIAQARKLFDMMP-Q 297
           +       ++  +  F  M  +NV       S +  MI  +G+ G I +A      MP +
Sbjct: 519 SACTHVGLVEQGKRYFNLM--KNVHHIEPTHSHYACMIDLFGRAGLIEEAYNFIKTMPIE 576

Query: 298 RDCVSWAAIISG 309
            D ++W +++S 
Sbjct: 577 PDGIAWGSLLSA 588



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 31/135 (22%)

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G+ IH +++K G     F+ N LL  Y K  S  +A+ +F  + ++   SWNT+++ YA+
Sbjct: 29  GRFIHARIIKHGLHLSVFLMNNLLNFYSKTASFNDAHRLFSEMPQRTTFSWNTLLSSYAK 88

Query: 414 HG-----------------------------FGK--QALMVFESMKTIGVKPDEITMVGV 442
            G                              G+   A+  F+ M + G+ P + T   V
Sbjct: 89  GGNIETARRLFDDIPEPDSVSWTTMIVGYNQMGRFNTAIHTFQQMISDGILPTQFTFTNV 148

Query: 443 LSACSHAGLIDRGTE 457
           L++C   G +D G +
Sbjct: 149 LASCVATGSLDIGKK 163


>Medtr2g086150.1 | PPR containing plant-like protein | HC |
           chr2:36227786-36230819 | 20130731
          Length = 867

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 276/752 (36%), Positives = 433/752 (57%), Gaps = 68/752 (9%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVS 54
           M+  + +   RVF+ M  R+ VS+ ++++GY  N  +    +LF +M      P R  VS
Sbjct: 139 MKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVS 198

Query: 55  ---------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQK 81
                                            +N +++ Y R   L DAR +FD M  +
Sbjct: 199 TVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIR 258

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           D V+WN+M++GY +NG   E  E+F      N +   G+   ++    + ++C      +
Sbjct: 259 DWVTWNSMIAGYVRNGQDLEVFEIF------NKMQLAGVKPTHMTFASVIKSCASLRELA 312

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD- 200
             +L+    L  GF   +++  A                 ++   ++  +M  A +LF  
Sbjct: 313 LVKLMQCKALKSGFTTDQIVITA-----------------LMVALSKCKEMDDALSLFSL 355

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDM 256
               ++V +WTAM+SG +QNG  D+A   F QM ++    N  +Y+A++  +      +M
Sbjct: 356 MEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEM 415

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
             E+ +    R+ S    ++  Y + G+   A K+F+++  +D ++W+A+++GYAQTG  
Sbjct: 416 HAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGET 475

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCAD-IAALELGKQIHGQVVKTGYETGCFVGNA 375
           EEA  +F ++ ++G   N  TFS  ++ CA   AA E GKQ H   +K        V +A
Sbjct: 476 EEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSA 535

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY K G+I  A++VF+  +E+D+VSWN+MI+GY++HG  K+AL VF+ M+   +  D
Sbjct: 536 LVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVD 595

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            +T +GV++AC+HAGL+++G +YF SM  D+ + P+ KHY+CMIDL  RAG LE+A  ++
Sbjct: 596 AVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGII 655

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
             MPF P A  W  LLGA+R+H N ELGE AAE +  ++P +S  YVLLSN+YAA+G W 
Sbjct: 656 NEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQ 715

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +  N+R  M    V+K  GYSW+EV+NK + F  GD  HP  ++IY+ L EL ++++  G
Sbjct: 716 ERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAG 775

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           Y   TK V HD+E+E+KE +L +HSE+LA+AFG++  P   PI+++KNLRVC DCHN  K
Sbjct: 776 YQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTK 835

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            +S +  R I++RDS+RFHHF +G+CSCGDYW
Sbjct: 836 LVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 153/584 (26%), Positives = 267/584 (45%), Gaps = 120/584 (20%)

Query: 39  LARDLFDKMPQR--DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQN 96
           +A +LFDK+P R   L   N +L  Y R+++  +A  LF S+    +    + LS     
Sbjct: 43  IAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSC---- 98

Query: 97  GYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFV 156
                   VF    +  A S +G L   VH   ++    L D  S         L+  ++
Sbjct: 99  --------VF----NICAGSLDGKLGRQVHCQCVKFG--LVDHVS-----VGTSLVDMYM 139

Query: 157 KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF-------- 208
           K + +   R++FD+M  R+VVSW ++++GY+ +G       LF Q  ++ V         
Sbjct: 140 KTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVST 199

Query: 209 -------------------------------TWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
                                           + +++S Y + GML +AR  FD+M  ++
Sbjct: 200 VIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRD 259

Query: 238 EISYNAMVAGYVQS----------NKMDMA-------------------RE--LFEAMPS 266
            +++N+M+AGYV++          NKM +A                   RE  L + M  
Sbjct: 260 WVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQC 319

Query: 267 RNVSSWNT--------MITGYGQNGDIAQARKLFDMMPQ-RDCVSWAAIISGYAQTGHYE 317
           + + S  T        ++    +  ++  A  LF +M + ++ VSW A+ISG  Q G  +
Sbjct: 320 KALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND 379

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALL 377
           +A+N+F +++R+G   N  T+S  L+    +   E+    H +V+KT YE    VG ALL
Sbjct: 380 QAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEM----HAEVIKTNYERSSSVGTALL 435

Query: 378 GMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEI 437
             Y K G+  +A  VFE IE KD+++W+ M+AGYA+ G  ++A  +F  +   G+KP+E 
Sbjct: 436 DAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEF 495

Query: 438 TMVGVLSAC-SHAGLIDRGTE---YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           T   V++AC S     ++G +   Y   M  + ++  SS     ++ +  + G ++ A +
Sbjct: 496 TFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSS----ALVTMYAKRGNIDSAHE 551

Query: 494 LMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
           + +    E    SW +++     HG     +KA E+  +M+  N
Sbjct: 552 VFKRQK-ERDLVSWNSMISGYSQHGQ---AKKALEVFDEMQKRN 591


>Medtr5g008600.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:1841187-1847304 | 20130731
          Length = 880

 Score =  518 bits (1334), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/628 (41%), Positives = 383/628 (60%), Gaps = 15/628 (2%)

Query: 93  YAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISW---- 148
           + Q     EA +  +++P  +   ++ L+AA + + ++E   R+         I      
Sbjct: 42  FCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVIS 101

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           N L+  + K   L  A+ LFD++  +D+ SWNTMISGYA  G + QA+ LFD+ PH+D F
Sbjct: 102 NRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNF 161

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKM----------DMAR 258
           +W A++SGYV  G   EA   F +M Q+NE S   M                    ++  
Sbjct: 162 SWNAVISGYVSQGWYMEALDLF-RMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHG 220

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
            L  +    +   W  ++  YG+ G + +AR +FD M  +D VSW  +I    + G  +E
Sbjct: 221 YLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKE 280

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
             ++F ++   G   N  TF+  L+ CAD+AA ++GK++HG + + GY+   F  +AL+ 
Sbjct: 281 GFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVH 340

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           +Y KCG+   A  VF  +   D+VSW ++I GYA++G    AL  FES+   G KPDEIT
Sbjct: 341 VYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEIT 400

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            VGVLSAC+HAGL+D G EYF+S+ + + +  ++ HY C+IDLL R+GR +EA++++ NM
Sbjct: 401 FVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNM 460

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
           P +P    W +LLG  RIHGN EL E+AA+ +F++EP N   Y+ LSN+YA +G W +  
Sbjct: 461 PMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEET 520

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R+ M + G+ K  G SW+E++ ++H F VGD  HP+   I+ +L EL  KM+ EGYV+
Sbjct: 521 KVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVA 580

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHIS 678
            T  VLHDVEEE+KE  + YHSEKLAVAFGI++   G PI+V KNLR C DCHNA+K+IS
Sbjct: 581 DTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYIS 640

Query: 679 KIVGRLIILRDSHRFHHFNEGICSCGDY 706
           KIV R II+RDS+RFH F +G CSC DY
Sbjct: 641 KIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 182/424 (42%), Gaps = 72/424 (16%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           V  N +I  Y +      A+ LFD++PQ+DL SWN M++GY    R+  AR+LFD MP +
Sbjct: 99  VISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR 158

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI---------EE 132
           D  SWNA++SGY   G+  EA ++F  M    + + N    +                E 
Sbjct: 159 DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEI 218

Query: 133 ACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
              L  S  + + + W  L+  + K   L  AR +FD+M  +D+VSW TMI    +DG  
Sbjct: 219 HGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRK 278

Query: 193 SQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE-ARTFFDQMPQK-----NEISYN---- 242
            +  +LF     +D+       + Y   G+L+  A    +QM ++       + Y+    
Sbjct: 279 KEGFSLF-----RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSF 333

Query: 243 ---AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
              A+V  Y +    + AR +F  MP  ++ SW ++I GY QNG         DM     
Sbjct: 334 AASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQP-------DM----- 381

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG----- 354
                              AL  F  + R G   +  TF   LS C     +++G     
Sbjct: 382 -------------------ALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFH 422

Query: 355 --KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGY 411
             K+ HG +V T     C     ++ +  + G   EA ++ + +  K D   W +++ G 
Sbjct: 423 SVKEKHG-LVHTADHYAC-----VIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGC 476

Query: 412 ARHG 415
             HG
Sbjct: 477 RIHG 480



 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 164/380 (43%), Gaps = 80/380 (21%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A  +F+ +P++   S+N MISGY    R   AR LFD+MP RD  SWN +++GYV     
Sbjct: 117 AQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWY 176

Query: 69  GDARRLFDSMPQK----------------------------------------DVVSWNA 88
            +A  LF  M +                                         D V W A
Sbjct: 177 MEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTA 236

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISW 148
           +L  Y + G  +EAR +F QM  K+ +SW  ++     +GR +E   LF           
Sbjct: 237 LLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRD--------- 287

Query: 149 NCLMGGFVKRK------MLGAARKLFDKMHVRDVVSWNT-------------MISGYAQD 189
             LMG  V+        +L A   L  +   ++V  + T             ++  Y++ 
Sbjct: 288 --LMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKC 345

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMV 245
           G+   A+ +F+Q P  D+ +WT+++ GY QNG  D A  FF+ +     + +EI++  ++
Sbjct: 346 GNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVL 405

Query: 246 AGYVQSNKMDMARELFEAMPSRN-----VSSWNTMITGYGQNGDIAQARKLFDMMPQR-D 299
           +    +  +D+  E F ++  ++        +  +I    ++G   +A  + D MP + D
Sbjct: 406 SACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPD 465

Query: 300 CVSWAAIISGYAQTGHYEEA 319
              WA+++ G    G+ E A
Sbjct: 466 KFLWASLLGGCRIHGNIELA 485


>Medtr7g076020.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:28566228-28568873 | 20130731
          Length = 808

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/775 (35%), Positives = 420/775 (54%), Gaps = 98/775 (12%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +++   ++ + + AR LFDKMPQ+D  SWN M++ YV   RL +AR LFD    K  +
Sbjct: 40  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 99

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           +W++++SGY + G   EA ++F  M         G  A+    G +   C         E
Sbjct: 100 TWSSIISGYCKFGCKVEAFDLFRSM------RLEGWKASQFTLGSVLRVCSSLGLIQTGE 153

Query: 145 LISWNCLMGGF--------------VKRKMLGAARKLFDKMHV--RDVVSWNTMISGYAQ 188
           +I    +  GF               K K +  A  LF  +    ++ V W  M++GYAQ
Sbjct: 154 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 213

Query: 189 DGDMSQAKNLFDQSPHQ---------------------------------------DVFT 209
           +GD  +A   F     Q                                       +V+ 
Sbjct: 214 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYV 273

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV 269
            +A+V  Y + G L  A+   + M   + +S+N+++ G+V+    + A  LF+ M  RN+
Sbjct: 274 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM 333

Query: 270 --------SSWNTMITG-----------------------------YGQNGDIAQARKLF 292
                   S  N  + G                             Y + GD+  A  +F
Sbjct: 334 KIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVF 393

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
           + M ++D +SW ++++GYAQ   +EE+L +F +++  G + ++   +  LS CA++  LE
Sbjct: 394 EKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLE 453

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            GKQ+H   +K+G      V N+L+ MY KCG + +A+ +F  ++ KDV++W  +I GYA
Sbjct: 454 FGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYA 513

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           ++G G+ +L  +++M + G +PD IT +G+L ACSHAGL+D G +YF  MNK Y + P  
Sbjct: 514 QNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGP 573

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
           +HY CMIDL GR+G+L+EA+ L+  M  +P A  W +LL A R+H N EL E+AA  +F+
Sbjct: 574 EHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFE 633

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           +EP N+  YV+LSN+Y+AS +W D   +R  M+  G+ K  G SW+E+ ++++ F   D 
Sbjct: 634 LEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDR 693

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
            HP +  IY  ++E+ L+++  GYV      LHD+++E KE  L YHSEKLAVAFG+L  
Sbjct: 694 GHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAA 753

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           P   PIR+ KNLRVC DCH+A+K+IS++  R IILRDS+ FHHF EG CSCGDYW
Sbjct: 754 PPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 808



 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 164/338 (48%), Gaps = 38/338 (11%)

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELF 261
           + ++ ++    +++   ++G +++AR  FD+MPQK+E S+N M++ YV   ++  ARELF
Sbjct: 31  ASYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELF 90

Query: 262 EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
           +    ++  +W+++I+G                               Y + G   EA +
Sbjct: 91  DGCSCKSSITWSSIISG-------------------------------YCKFGCKVEAFD 119

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
           +F  ++ +G   ++ T    L  C+ +  ++ G+ IHG VVK G+E   FV   L+ MY 
Sbjct: 120 LFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 179

Query: 382 KCGSIGEANDVFEGIE--EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           KC  + EA  +F+G+E   K+ V W  M+ GYA++G G +A+  F  M   GV+ ++ T 
Sbjct: 180 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 239

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
             +L+ACS   L     E  +          +    + ++D+  + G L+ A++++  M 
Sbjct: 240 PTILTACSSV-LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME 298

Query: 500 FEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
            +    SW +L+     HG   L E+A  +   M   N
Sbjct: 299 -DDDVVSWNSLMVGFVRHG---LEEEALRLFKNMHGRN 332



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 108/255 (42%), Gaps = 53/255 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVS- 54
           + G  D A  VF  M  +  +S+ ++++GY +N     +  +F  M      P + +V+ 
Sbjct: 382 KTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVAS 441

Query: 55  --------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKD 82
                                           +N ++  Y +   L DA  +F SM  KD
Sbjct: 442 ILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKD 501

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLFD 138
           V++W A++ GYAQNG    + + +  M       + I++ GLL A  H G ++E  + F 
Sbjct: 502 VITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQ 561

Query: 139 SKSDWELIS-----WNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDM 192
             +    I      + C++  F +   L  A++L D+M V+ D   W +++S      ++
Sbjct: 562 QMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENL 621

Query: 193 SQAK----NLFDQSP 203
             A+    NLF+  P
Sbjct: 622 ELAERAATNLFELEP 636


>Medtr8g088300.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:36572831-36570446 | 20130731
          Length = 700

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 262/677 (38%), Positives = 390/677 (57%), Gaps = 19/677 (2%)

Query: 48  PQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFY 107
           P+    S N     +++N++L  AR +F+ +P   V  +  +L  YA N    EA  +F 
Sbjct: 26  PKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFN 85

Query: 108 QMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
           Q+P   K+ ISWN ++ A +       A +LFD       ISW  ++ GF+    +  A 
Sbjct: 86  QIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAE 145

Query: 166 KLFDKMHV--RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
           + F+ M    +DV +WN M++GY  +G ++ A  LF Q P +DV +WT+++ G  +NG  
Sbjct: 146 RFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKS 205

Query: 224 DEARTFFDQMPQKNE--ISYNAMVAGYVQSNKM-----------DMARELFEAMPSRNVS 270
            +A  FF  M   +   IS   +V G   + K+            M +  F       VS
Sbjct: 206 YQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVS 265

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  +++T Y     +  A K+F     ++ V W A+++G      + EAL +F E+ R  
Sbjct: 266 A--SLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFN 323

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
              N S+F+ AL++C  +  LE G+ IH   +K G E   + GN+L+ MY KCG IG+A 
Sbjct: 324 VVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDAL 383

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
            VF+GI EK+VVSWN++I G A+HG G  AL++F+ M   GV+ DEIT+ G+LSACS +G
Sbjct: 384 CVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSG 443

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           ++ +   +F    +  S+  + +HY CM+D+LGR G +EEA+ L  +MP E  +  W  L
Sbjct: 444 MLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVL 503

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           L A R+H + ++ E+AA+ +F+MEP  S  YVLLSNLYA+S RW +   +R +M+  G+ 
Sbjct: 504 LSACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIV 563

Query: 571 KVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 630
           K  G SW+ ++   H+F   D  HP  + IY  L  L +K+R  GY+   +  LHDVE E
Sbjct: 564 KQPGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIE 623

Query: 631 EKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDS 690
           + E ML YHSE+LA+AFG+L+   G  I ++KNLRVC DCH AI  ++KIV R I++RDS
Sbjct: 624 QNEEMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDS 683

Query: 691 HRFHHFNEGICSCGDYW 707
            RFHHF  GICSCGDYW
Sbjct: 684 SRFHHFKNGICSCGDYW 700



 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 149/562 (26%), Positives = 252/562 (44%), Gaps = 87/562 (15%)

Query: 3   NGHCDSALRVFNTMPR--RSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           N +   A+ +FN +P   + ++S+N++I   +    F  A  LFD+MPQR+ +SW  ++ 
Sbjct: 74  NNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIH 133

Query: 61  GYVRNRRLGDARRLFDSMP--QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           G++   R+ +A R F++MP   KDV +WNAM++GY  NG  ++A  +F QMP ++ ISW 
Sbjct: 134 GFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWT 193

Query: 119 GLLAAYVHNGRIEEACRLFDSKSDWE--LISWNCLMGGFVKRKMLGAARKLFD-----KM 171
            ++     NG+  +A   F +   +    IS   L+ G      L AA K+ D     ++
Sbjct: 194 SIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCG------LSAAAKILDFYAGIQI 247

Query: 172 HV----------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNG 221
           H            D     ++++ YA    M  A  +F ++  ++V  WTA+++G   N 
Sbjct: 248 HCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLND 307

Query: 222 MLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEA---MPSRN-VSSWN 273
              EA   F +M +     NE S+ + +   V    ++  R +  A   M   N V + N
Sbjct: 308 KHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGN 367

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
           +++  Y + G I  A  +F  + +++ VSW ++I G AQ G    AL +F E+ R+G   
Sbjct: 368 SLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVES 427

Query: 334 NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           +  T +  LS C+    L+  +              CF G      YF          + 
Sbjct: 428 DEITLTGLLSACSRSGMLQKAR--------------CFFG------YF-----ARKRSMK 462

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC---SHAG 450
             +E      +  M+    R G  ++A  +  SM    V+ + +  + +LSAC   S   
Sbjct: 463 LTVEH-----YACMVDVLGRCGEVEEAEALATSMP---VEANSMVWLVLLSACRVHSSLD 514

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGR-LEEAQDLMR---NMPFEPPAAS 506
           + +R  +  + M  D S       Y  + +L   + R LE A+  M+   N   + P +S
Sbjct: 515 VAERAAKRIFEMEPDCSAA-----YVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSS 569

Query: 507 WGAL-------LGASRIHGNTE 521
           W  L       L A R H  TE
Sbjct: 570 WITLKGMRHEFLSADRSHPLTE 591



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 9/221 (4%)

Query: 228 TFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQ 287
           T   Q P+ +  S N     ++++ K+D AR +F  +PS +VS +  ++  Y  N ++ +
Sbjct: 20  TTLIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHE 79

Query: 288 ARKLFDMMPQ--RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
           A  LF+ +P   +D +SW ++I        +  A+ +F E+ +     N  +++  +   
Sbjct: 80  AINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQR----NSISWTTIIHGF 135

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
                +   ++    +     +   +  NA++  Y   G + +A  +F  +  +DV+SW 
Sbjct: 136 LSTGRVNEAERFFNAMPYVDKDVATW--NAMVNGYCNNGRVNDALRLFCQMPSRDVISWT 193

Query: 406 TMIAGYARHGFGKQALMVFESMKTI-GVKPDEITMVGVLSA 445
           ++I G  R+G   QAL  F++M    GV     T+V  LSA
Sbjct: 194 SIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSA 234


>Medtr1g111020.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:50134416-50129873 | 20130731
          Length = 860

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/740 (35%), Positives = 413/740 (55%), Gaps = 58/740 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV- 83
           N ++  Y +  +FS ++ LF  + +  +VSWN + + +V++  L +   LF  M +  V 
Sbjct: 122 NTLVVMYAKCGQFSDSKKLFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVR 181

Query: 84  -------VSWNAMLSGYAQNGYADEAREVFYQMPHK-NAISWNGLLAAYVHNGRIEEACR 135
                  +  NA  +G    G       +  ++ H  +  S N L+  Y   GRIE+A  
Sbjct: 182 PNEYSLSIILNA-CAGLRDGGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVD 240

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGD 191
           +F      + +SWN ++ G V  +    A  L ++M       +V + ++ +   A  G 
Sbjct: 241 VFREMIHPDTVSWNAIIAGCVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGL 300

Query: 192 MSQAKNLFDQS----PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-SYNAMVA 246
               + +   S       D+F    ++  Y +  M+D+AR  +D MP K+ I + NA+++
Sbjct: 301 KDLGRQIHSCSVKIDSDSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNALIS 360

Query: 247 GYVQSNKMDMARELFEAMPSRNVS------------------------------------ 270
           GY Q    + A  LF  +   N+                                     
Sbjct: 361 GYSQCGDDEQAISLFFELHHENIDFNQTTLSTVLKSVASLQQIKVCKQIHTLSIKCGIYS 420

Query: 271 ---SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
                N+++  YG+   I +A K+F+     D V++ ++I+ Y+Q G  EEAL ++++++
Sbjct: 421 DFYVINSLLDTYGKCSHIDEASKIFEERTWEDLVAYTSMITAYSQHGDAEEALKLYLQMQ 480

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
                 +    S  L+ CA+++A E GKQ+H   +K G+ +  F  N+L+ MY KCGSI 
Sbjct: 481 VADIKPDPFVCSSLLNACANLSAYEQGKQLHVHAIKFGFMSDIFASNSLVNMYAKCGSIE 540

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           +A+  F  I ++ +VSW+ MI G A+HG GK+AL++F  M    V P+ IT+V VL AC+
Sbjct: 541 DADRAFSEIPQRGIVSWSAMIGGLAQHGHGKEALIMFNQMLKDCVSPNHITLVSVLCACN 600

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           HAGL++ G +YF +M + + + P+ +H+ CMIDLLGR+G+L EA +L+ ++PFE   + W
Sbjct: 601 HAGLVNEGKQYFETMEEKFGIKPTQEHHACMIDLLGRSGKLNEAVELVNSIPFEADGSVW 660

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
           GALLGA+RIH N ELGEKAAE +F +EP  SG  VLL+N+YA++G W +  N+R  M++ 
Sbjct: 661 GALLGAARIHKNVELGEKAAERLFTLEPDKSGTLVLLANIYASAGMWENVANVRKVMQNS 720

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV 627
            V+K  G SW+EV+++IH F VGD  H   D I+A L+EL   + + GY    +  +H+V
Sbjct: 721 NVKKEPGMSWIEVKDRIHTFIVGDRNHSRSDEIFAKLDELSELLSKAGYSPIIETDIHNV 780

Query: 628 EEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIIL 687
           E  EKE +L +HSEKLAVAFG++  P G PIRV KNLRVC DCH  +K +SK+V R I++
Sbjct: 781 ERSEKEKLLYHHSEKLAVAFGLIVTPPGAPIRVKKNLRVCVDCHTFLKLVSKLVSRQIVV 840

Query: 688 RDSHRFHHFNEGICSCGDYW 707
           RD +RFHHF  G CSCGDYW
Sbjct: 841 RDINRFHHFKNGSCSCGDYW 860



 Score =  179 bits (455), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/566 (24%), Positives = 245/566 (43%), Gaps = 93/566 (16%)

Query: 56  NVMLTGYVRNRRLGDARRLFD-SMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP---- 110
           N +LT Y  +RR G A  L D S   + VVSW+A++S Y QNG+  EA   F +M     
Sbjct: 20  NHLLTFYSNSRRFGYACNLLDQSTEPRTVVSWSALISRYVQNGFHKEALLAFNEMCTLGV 79

Query: 111 -----------------------------------HKNAISWNGLLAAYVHNGRIEEACR 135
                                                +A   N L+  Y   G+  ++ +
Sbjct: 80  KSNEFTFPTVLKACSIKKDLNMGKKVHAMTVVSGFESDAFVSNTLVVMYAKCGQFSDSKK 139

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM------------------------ 171
           LF    +  ++SWN L    V+   L     LF +M                        
Sbjct: 140 LFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVRPNEYSLSIILNACAGLRD 199

Query: 172 ---------------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                          H  D  S N ++  YA+ G +  A ++F +  H D  +W A+++G
Sbjct: 200 GGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVDVFREMIHPDTVSWNAIIAG 259

Query: 217 YVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW 272
            V +   D A    ++M +     N  + ++ +         D+ R++       +  S 
Sbjct: 260 CVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGLKDLGRQIHSCSVKIDSDSD 319

Query: 273 NTMITG----YGQNGDIAQARKLFDMMPQRD-CVSWAAIISGYAQTGHYEEALNMFIEIK 327
             +  G    Y +   +  AR+ +D+MP +D  ++  A+ISGY+Q G  E+A+++F E+ 
Sbjct: 320 LFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNALISGYSQCGDDEQAISLFFELH 379

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
            +    N++T S  L + A +  +++ KQIH   +K G  +  +V N+LL  Y KC  I 
Sbjct: 380 HENIDFNQTTLSTVLKSVASLQQIKVCKQIHTLSIKCGIYSDFYVINSLLDTYGKCSHID 439

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA+ +FE    +D+V++ +MI  Y++HG  ++AL ++  M+   +KPD      +L+AC+
Sbjct: 440 EASKIFEERTWEDLVAYTSMITAYSQHGDAEEALKLYLQMQVADIKPDPFVCSSLLNACA 499

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           +    ++G +      K +           ++++  + G +E+A      +P +    SW
Sbjct: 500 NLSAYEQGKQLHVHAIK-FGFMSDIFASNSLVNMYAKCGSIEDADRAFSEIP-QRGIVSW 557

Query: 508 GALLGASRIHGNTELGEKAAEMVFKM 533
            A++G    HG+   G++A  M  +M
Sbjct: 558 SAMIGGLAQHGH---GKEALIMFNQM 580



 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 21/371 (5%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPH-QDVFTWTAMVSGYVQNGMLDEARTFFDQM----P 234
           N +++ Y+       A NL DQS   + V +W+A++S YVQNG   EA   F++M     
Sbjct: 20  NHLLTFYSNSRRFGYACNLLDQSTEPRTVVSWSALISRYVQNGFHKEALLAFNEMCTLGV 79

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARK 290
           + NE ++  ++        ++M +++          S     NT++  Y + G  + ++K
Sbjct: 80  KSNEFTFPTVLKACSIKKDLNMGKKVHAMTVVSGFESDAFVSNTLVVMYAKCGQFSDSKK 139

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           LF M+ +   VSW A+ S + Q+    E +++F  +       N  + S  L+ CA +  
Sbjct: 140 LFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVRPNEYSLSIILNACAGLRD 199

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
             +G+ +HG ++K G+    F  NAL+ MY K G I +A DVF  +   D VSWN +IAG
Sbjct: 200 GGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVDVFREMIHPDTVSWNAIIAG 259

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP 470
              H +   AL++   MK  G  P+  T+   L AC+  GL D G +      K   +  
Sbjct: 260 CVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGLKDLGRQIHSCSVK---IDS 316

Query: 471 SSKHYTC--MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG--EKA 526
            S  +    +IDL  +   +++A+     MP +    +  AL     I G ++ G  E+A
Sbjct: 317 DSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNAL-----ISGYSQCGDDEQA 371

Query: 527 AEMVFKMEPHN 537
             + F++   N
Sbjct: 372 ISLFFELHHEN 382



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 172/434 (39%), Gaps = 128/434 (29%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ------------ 49
           + G  + A+ VF  M    +VS+NA+I+G + +    LA  L ++M +            
Sbjct: 231 KAGRIEDAVDVFREMIHPDTVSWNAIIAGCVLHEYNDLALILLNEMKKSGSCPNVFTLSS 290

Query: 50  --------------RDLVSWNV-------------MLTGYVRNRRLGDARRLFDSMPQKD 82
                         R + S +V             ++  Y +   + DARR +D MP KD
Sbjct: 291 ALKACAAMGLKDLGRQIHSCSVKIDSDSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKD 350

Query: 83  -VVSWNAMLSGYAQNGYADEAREVFYQMPHKNA--------------------------- 114
            +++ NA++SGY+Q G  ++A  +F+++ H+N                            
Sbjct: 351 HIIAGNALISGYSQCGDDEQAISLFFELHHENIDFNQTTLSTVLKSVASLQQIKVCKQIH 410

Query: 115 ------------ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLG 162
                          N LL  Y     I+EA ++F+ ++  +L+++  ++  + +     
Sbjct: 411 TLSIKCGIYSDFYVINSLLDTYGKCSHIDEASKIFEERTWEDLVAYTSMITAYSQHGDAE 470

Query: 163 AARKLFDKMHV---------------------------------------RDVVSWNTMI 183
            A KL+ +M V                                        D+ + N+++
Sbjct: 471 EALKLYLQMQVADIKPDPFVCSSLLNACANLSAYEQGKQLHVHAIKFGFMSDIFASNSLV 530

Query: 184 SGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEI 239
           + YA+ G +  A   F + P + + +W+AM+ G  Q+G   EA   F+QM +     N I
Sbjct: 531 NMYAKCGSIEDADRAFSEIPQRGIVSWSAMIGGLAQHGHGKEALIMFNQMLKDCVSPNHI 590

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDM 294
           +  +++     +  ++  ++ FE M  +            MI   G++G + +A +L + 
Sbjct: 591 TLVSVLCACNHAGLVNEGKQYFETMEEKFGIKPTQEHHACMIDLLGRSGKLNEAVELVNS 650

Query: 295 MP-QRDCVSWAAII 307
           +P + D   W A++
Sbjct: 651 IPFEADGSVWGALL 664


>Medtr1g039030.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:14398657-14402125 | 20130731
          Length = 960

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/699 (36%), Positives = 401/699 (57%), Gaps = 26/699 (3%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  Y++     LA  +F  + +  L  WN M+ GY +      A ++F+ MP++D V
Sbjct: 185 NSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEV 244

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEAC----RL 136
           SWN ++S ++Q+G+  +   +F +M ++    N +++  +L+A      ++       R+
Sbjct: 245 SWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARI 304

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
              +   +L+  N L+  + K   L  A+++F  +   D +SWN++I+G    G    A 
Sbjct: 305 LRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDAL 364

Query: 197 NLFDQSPHQDVF-------TWTAMVSG--YVQNGMLDEARTFFDQMPQKNEISYNAMVAG 247
            LF+Q     V        T   + SG  Y   G L    T    M     +  NA++  
Sbjct: 365 ILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVG-NAIITM 423

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAII 307
           Y +    D A  +F  MP RN  SW  MIT + ++GDI +AR  FDMMP+R+ V+W +++
Sbjct: 424 YAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSML 483

Query: 308 SGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE 367
           S Y Q G  EE L +++ ++ +G   +  TF+ ++  CAD+A ++LG Q+     K G  
Sbjct: 484 STYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLS 543

Query: 368 TGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM 427
               V N+++ MY +CG I EA + F+ I++KD++SWN M+A +A++G G + +  FE M
Sbjct: 544 LNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDM 603

Query: 428 KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGR 487
                KP+ I+ V VLS CSH GL+  G  YF SM + + ++P+++H++CM+DLLGRAG 
Sbjct: 604 LKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGL 663

Query: 488 LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNL 547
           LE+A+DL+  MPF+P A  W ALLG+ R+H +  L E AA+ + +++   S  YVLLSN+
Sbjct: 664 LEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNM 723

Query: 548 YAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEEL 607
           Y+ SG   +  +MR  M+  G++   G SW+EV N++H FTV +  HP+   +Y  LEE+
Sbjct: 724 YSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEM 783

Query: 608 DLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVC 667
              +   G   + +  +H  +        KYHSEKLA AFG+L +P+  PI V+KNLRVC
Sbjct: 784 MKMIEDTGKYITVESSVHRSK--------KYHSEKLAFAFGLLNLPSWMPIHVMKNLRVC 835

Query: 668 EDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDY 706
           +DCH  IK +S +  R +I+RD +RFHHF +GICSC DY
Sbjct: 836 DDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 250/527 (47%), Gaps = 55/527 (10%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP--QKDVVSWNAMLSGYAQNG 97
           A  +F +   R++ +WN M+   V + R+ DA +LFD MP   KD VSW  M+SGY+QNG
Sbjct: 62  AFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNG 121

Query: 98  YADEAREVFYQM--------PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW----EL 145
           +   + E F  M         + +  S+  ++ A    G    A +L    S      E 
Sbjct: 122 FHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMET 181

Query: 146 ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ 205
              N ++G +VK   +  A  +F  +    +  WN+MI GY+Q     +A  +F++ P +
Sbjct: 182 CIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPER 241

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELF 261
           D  +W  ++S + Q+G   +    F +M  +    N ++Y ++++    ++ +     L 
Sbjct: 242 DEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLH 301

Query: 262 EAM----PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE 317
             +     S ++   N +I  Y + G +  A+++F  + + D +SW ++I+G    G  E
Sbjct: 302 ARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGE 361

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALL 377
           +AL +F +++R    L+       L  C+       G+ +HG  +K+G  +   VGNA++
Sbjct: 362 DALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAII 421

Query: 378 GMYFKC-------------------------------GSIGEANDVFEGIEEKDVVSWNT 406
            MY KC                               G IG+A   F+ + E+++V+WN+
Sbjct: 422 TMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNS 481

Query: 407 MIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY 466
           M++ Y ++GF ++ L ++ SM++ GV+PD IT    + AC+   ++  G +      K +
Sbjct: 482 MLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK-F 540

Query: 467 SVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            ++ +      ++ +  R G ++EA++   ++  +    SW A+L A
Sbjct: 541 GLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAMLAA 586



 Score =  196 bits (498), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 142/510 (27%), Positives = 234/510 (45%), Gaps = 62/510 (12%)

Query: 93  YAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLM 152
           Y+  G   +A +VF +  H+N  +WN ++ A V + R+ +A                   
Sbjct: 53  YSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDA------------------- 93

Query: 153 GGFVKRKMLGAARKLFDKMHVR--DVVSWNTMISGYAQDGDMSQAKNLF--------DQS 202
                        KLFD+M VR  D VSW TMISGY+Q+G  S++   F        D  
Sbjct: 94  ------------EKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGG 141

Query: 203 PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY-------NAMVAGYVQSNKMD 255
            + D F++T+++      G L ++R         +++ +       N++V  YV+   +D
Sbjct: 142 KNYDPFSFTSVMKA---CGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVD 198

Query: 256 MARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
           +A  +F  +   ++  WN+MI GY Q     +A ++F+ MP+RD VSW  +IS ++Q G 
Sbjct: 199 LAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGF 258

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
             + L MF+E+   G S N  T+   LS CA  + L+ G  +H ++++  +      GN 
Sbjct: 259 GVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNG 318

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY KCG +  A  VF+ + E D +SWN++I G    G G+ AL++F  M+   V  D
Sbjct: 319 LIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLD 378

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           E  +  +L  CS       G E  +       +  S+     +I +  + G  ++A  + 
Sbjct: 379 EFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVF 437

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH-NSGMYVLLSNLYAASGRW 554
           R MP      SW A++ A    G  ++G+  A   F M P  N   +  + + Y  +G  
Sbjct: 438 RLMPLR-NTISWTAMITAFSRSG--DIGK--ARGYFDMMPERNIVTWNSMLSTYVQNGFS 492

Query: 555 ADAGNMRSRMRDVGVQKVTGYSWVEVQNKI 584
            +   +   MR  GVQ      W+     I
Sbjct: 493 EEGLKLYVSMRSNGVQP----DWITFTTSI 518



 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 221/512 (43%), Gaps = 108/512 (21%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G  D A  VF  + R S   +N+MI GY +      A  +F++MP+RD VSWN +++
Sbjct: 192 VKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLIS 251

Query: 61  GYVRNRRLGDARRLFDSMPQK--------------------------------------- 81
            + ++        +F  M  +                                       
Sbjct: 252 IFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSL 311

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           D+V  N ++  YA+ G  D A+ VF  +   + ISWN L+   VH G  E+A  LF+   
Sbjct: 312 DLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFN--- 368

Query: 142 DWELISWNCLMGGFVKRKMLGAAR-----KLFDKMHVRDVVS--------WNTMISGYAQ 188
             ++   + ++  F+   +LG           + +H   + S         N +I+ YA+
Sbjct: 369 --QMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAK 426

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGY 248
            GD  +A  +F   P ++  +WTAM++ + ++G + +AR +FD MP++N +++N+M++ Y
Sbjct: 427 CGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTY 486

Query: 249 VQSNKMDMARELFEAMPSR---------------------------------------NV 269
           VQ+   +   +L+ +M S                                        NV
Sbjct: 487 VQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNV 546

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           S  N+++T Y + G I +A+  FD +  +D +SW A+++ +AQ G   + ++ F ++ + 
Sbjct: 547 SVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKT 606

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVK------TGYETGCFVGNALLGMYFKC 383
               N  ++   LS C+ +  +  GK     + +      T     C V   LLG   + 
Sbjct: 607 ECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVD--LLG---RA 661

Query: 384 GSIGEANDVFEGIEEK-DVVSWNTMIAGYARH 414
           G + +A D+ EG+  K +   W+ ++     H
Sbjct: 662 GLLEQAKDLIEGMPFKPNATVWSALLGSCRVH 693



 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 153/334 (45%), Gaps = 32/334 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  D A  VF  MP R+++S+ AMI+ + R+     AR  FD MP+R++V+WN ML+ 
Sbjct: 426 KCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLST 485

Query: 62  YVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KN 113
           YV+N    +  +L+ SM     Q D +++   +   A         +V           N
Sbjct: 486 YVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLN 545

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
               N ++  Y   G I+EA   FDS  D +LISWN ++  F +  +       F+ M  
Sbjct: 546 VSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLK 605

Query: 174 RDV----VSWNTMISGYAQDGDMSQAKNLFDQ-------SPHQDVFTWTAMVSGYVQNGM 222
            +     +S+ +++SG +  G +++ K+ FD        SP  + F  + MV    + G+
Sbjct: 606 TECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHF--SCMVDLLGRAGL 663

Query: 223 LDEARTFFDQMPQK-NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS------WNTM 275
           L++A+   + MP K N   ++A++      + + +A    + +   +V         + M
Sbjct: 664 LEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNM 723

Query: 276 ITGYGQNGDIAQARKLFD---MMPQRDCVSWAAI 306
            +  G+  ++A  RKL     +   R C SW  +
Sbjct: 724 YSESGELDNVADMRKLMKVKGIRTSRGC-SWIEV 756


>Medtr3g052720.1 | organelle transcript processing protein, putative
           | HC | chr3:20868148-20864227 | 20130731
          Length = 1150

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 250/624 (40%), Positives = 366/624 (58%), Gaps = 39/624 (6%)

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
           N L+  Y   G +  A ++F      +L+SWN L+ G+V    +  A  ++DKM VR+ +
Sbjct: 184 NTLINLYAVCGNMVSAHKVFKESVVLDLVSWNTLLAGYVNLGDVVEAECVYDKMPVRNTI 243

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ-- 235
           + N+MI  + ++G +++A++LFD+   +D+ +W+AM+S Y QNGM +EA   F  M    
Sbjct: 244 ASNSMIVLFGKEGCIAKARSLFDRIEGKDMVSWSAMISCYEQNGMCEEALVLFVDMNANG 303

Query: 236 ------------------------------------KNEISY-NAMVAGYVQSNKMDMAR 258
                                               ++ +S  NA++  Y    ++  A+
Sbjct: 304 VMVDEVVVVSAISACTSLSAVRMGRSVHGLAAKIGIQDYVSLQNALIHLYSNCGEILDAQ 363

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
           ++F      ++ SWN+MI+GY   G +  A+KLFD M ++D VSW+A+ISGYAQ G + E
Sbjct: 364 KIFSGGVLLDLVSWNSMISGYLMCGYVEDAKKLFDSMVEKDVVSWSAMISGYAQHGCFSE 423

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           A+ +F E++  G   + +     +S C  +AAL+LGK IH  + K  +     +G  L+ 
Sbjct: 424 AVALFQEMQLLGIRPDETAIVSVISACTHMAALDLGKWIHAYISKNEFNVNVILGTTLVD 483

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY KCG +  A +VF  +EEK V +WN +I G A +G  +++L VF  MK     P+EIT
Sbjct: 484 MYMKCGCVENALEVFYAMEEKGVSTWNALILGLAMNGLVEKSLNVFADMKKTKTLPNEIT 543

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            +GVL AC H GL+D G  YF SM +++ + P+ KHY CM+DLLGRAG L+EA++L+ +M
Sbjct: 544 FMGVLGACRHMGLVDEGRRYFSSMTQEHKIEPNVKHYGCMVDLLGRAGLLKEAEELIESM 603

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
           P  P  A+WGALLGA R H N E+GE+    + +++P + G +VLLSN+YA+ G W D  
Sbjct: 604 PMAPDVATWGALLGACRKHHNNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGDVL 663

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R  M   GV K+ G S +E    +H+F  GD  HP+   I   L E+  K++ EGY  
Sbjct: 664 EIRGIMAQHGVVKMPGCSMIEANGIVHEFLAGDKTHPQIKDIEHMLNEVAAKLKIEGYAP 723

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHIS 678
            T  V  D++EEEKE  L  HSEKLAVAFG++TIP   PIR+IKNLR+C DCH  +K IS
Sbjct: 724 ITSEVSLDIDEEEKETALFSHSEKLAVAFGLITIPLPAPIRIIKNLRICNDCHTVVKLIS 783

Query: 679 KIVGRLIILRDSHRFHHFNEGICS 702
           K   R I++RD HRFHHF  G CS
Sbjct: 784 KAFDREIVVRDRHRFHHFKHGSCS 807



 Score =  184 bits (466), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 204/428 (47%), Gaps = 75/428 (17%)

Query: 166 KLFDKMHVRDVVSWNTMISGYAQ-DGDMSQAKNLF------DQSPHQ------------- 205
           K+F+ +H  +   WNT++  + +      QA N +      + SP               
Sbjct: 99  KIFNHLHNPNTFIWNTIMRSHLELHNSPQQALNFYKLFLFQNTSPDHYTYPILLRSCTAR 158

Query: 206 --------------------DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMV 245
                               DV+    +++ Y   G +  A   F +    + +S+N ++
Sbjct: 159 VSEPEGKQIHDHVVKFGFDSDVYVRNTLINLYAVCGNMVSAHKVFKESVVLDLVSWNTLL 218

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
           AGYV    +  A  +++ MP RN  + N+MI  +G+ G IA+AR LFD +  +D VSW+A
Sbjct: 219 AGYVNLGDVVEAECVYDKMPVRNTIASNSMIVLFGKEGCIAKARSLFDRIEGKDMVSWSA 278

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           +IS Y Q G  EEAL +F+++  +G  ++      A+S C  ++A+ +G+ +HG   K G
Sbjct: 279 MISCYEQNGMCEEALVLFVDMNANGVMVDEVVVVSAISACTSLSAVRMGRSVHGLAAKIG 338

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEG------------------------------ 395
            +    + NAL+ +Y  CG I +A  +F G                              
Sbjct: 339 IQDYVSLQNALIHLYSNCGEILDAQKIFSGGVLLDLVSWNSMISGYLMCGYVEDAKKLFD 398

Query: 396 -IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
            + EKDVVSW+ MI+GYA+HG   +A+ +F+ M+ +G++PDE  +V V+SAC+H   +D 
Sbjct: 399 SMVEKDVVSWSAMISGYAQHGCFSEAVALFQEMQLLGIRPDETAIVSVISACTHMAALDL 458

Query: 455 GT-EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
           G   + Y    +++V       T ++D+  + G +E A ++   M  E   ++W AL+  
Sbjct: 459 GKWIHAYISKNEFNVNVILG--TTLVDMYMKCGCVENALEVFYAME-EKGVSTWNALILG 515

Query: 514 SRIHGNTE 521
             ++G  E
Sbjct: 516 LAMNGLVE 523



 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 201/444 (45%), Gaps = 59/444 (13%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +I+ Y        A  +F +    DLVSWN +L GYV    + +A  ++D MP ++ +
Sbjct: 184 NTLINLYAVCGNMVSAHKVFKESVVLDLVSWNTLLAGYVNLGDVVEAECVYDKMPVRNTI 243

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF-DSKSDW 143
           + N+M+  + + G   +AR +F ++  K+ +SW+ +++ Y  NG  EEA  LF D  ++ 
Sbjct: 244 ASNSMIVLFGKEGCIAKARSLFDRIEGKDMVSWSAMISCYEQNGMCEEALVLFVDMNANG 303

Query: 144 ELISWNCLMGGFVKRKMLGAAR-------------------------------------- 165
            ++    ++        L A R                                      
Sbjct: 304 VMVDEVVVVSAISACTSLSAVRMGRSVHGLAAKIGIQDYVSLQNALIHLYSNCGEILDAQ 363

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
           K+F    + D+VSWN+MISGY   G +  AK LFD    +DV +W+AM+SGY Q+G   E
Sbjct: 364 KIFSGGVLLDLVSWNSMISGYLMCGYVEDAKKLFDSMVEKDVVSWSAMISGYAQHGCFSE 423

Query: 226 ARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMIT 277
           A   F +M     + +E +  ++++       +D+ + +   +       NV    T++ 
Sbjct: 424 AVALFQEMQLLGIRPDETAIVSVISACTHMAALDLGKWIHAYISKNEFNVNVILGTTLVD 483

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
            Y + G +  A ++F  M ++   +W A+I G A  G  E++LN+F ++K+     N  T
Sbjct: 484 MYMKCGCVENALEVFYAMEEKGVSTWNALILGLAMNGLVEKSLNVFADMKKTKTLPNEIT 543

Query: 338 FSCALSTCADIAALELGKQIHGQVVK------TGYETGCFVGNALLGMYFKCGSIGEAND 391
           F   L  C  +  ++ G++    + +           GC V   LLG   + G + EA +
Sbjct: 544 FMGVLGACRHMGLVDEGRRYFSSMTQEHKIEPNVKHYGCMVD--LLG---RAGLLKEAEE 598

Query: 392 VFEGIE-EKDVVSWNTMIAGYARH 414
           + E +    DV +W  ++    +H
Sbjct: 599 LIESMPMAPDVATWGALLGACRKH 622



 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 165/323 (51%), Gaps = 29/323 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA+I  Y        A+ +F      DLVSWN M++GY+    + DA++LFDSM +KDVV
Sbjct: 347 NALIHLYSNCGEILDAQKIFSGGVLLDLVSWNSMISGYLMCGYVEDAKKLFDSMVEKDVV 406

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM------PHKNAISWNGLLAAYVHNGRIE--EACRL 136
           SW+AM+SGYAQ+G   EA  +F +M      P + AI    +++A  H   ++  +    
Sbjct: 407 SWSAMISGYAQHGCFSEAVALFQEMQLLGIRPDETAIV--SVISACTHMAALDLGKWIHA 464

Query: 137 FDSKSDW--ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
           + SK+++   +I    L+  ++K   +  A ++F  M  + V +WN +I G A +G + +
Sbjct: 465 YISKNEFNVNVILGTTLVDMYMKCGCVENALEVFYAMEEKGVSTWNALILGLAMNGLVEK 524

Query: 195 AKNLFDQSPHQDVF----TWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV 245
           + N+F             T+  ++      G++DE R +F  M Q+++I      Y  MV
Sbjct: 525 SLNVFADMKKTKTLPNEITFMGVLGACRHMGLVDEGRRYFSSMTQEHKIEPNVKHYGCMV 584

Query: 246 AGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQ--NGDIAQ--ARKLFDMMPQRDC 300
               ++  +  A EL E+MP + +V++W  ++    +  N ++ +   RKL  + P  D 
Sbjct: 585 DLLGRAGLLKEAEELIESMPMAPDVATWGALLGACRKHHNNEMGERLGRKLIQLQPDHD- 643

Query: 301 VSWAAIISG-YAQTGHYEEALNM 322
             +  ++S  YA  G++ + L +
Sbjct: 644 -GFHVLLSNIYASKGNWGDVLEI 665



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 53/258 (20%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQR------- 50
           G+ + A ++F++M  +  VS++AMISGY ++  FS A  LF +M      P         
Sbjct: 388 GYVEDAKKLFDSMVEKDVVSWSAMISGYAQHGCFSEAVALFQEMQLLGIRPDETAIVSVI 447

Query: 51  ---------DLVSW------------NVMLTG-----YVRNRRLGDARRLFDSMPQKDVV 84
                    DL  W            NV+L       Y++   + +A  +F +M +K V 
Sbjct: 448 SACTHMAALDLGKWIHAYISKNEFNVNVILGTTLVDMYMKCGCVENALEVFYAMEEKGVS 507

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           +WNA++ G A NG  +++  VF  M       N I++ G+L A  H G ++E  R F S 
Sbjct: 508 TWNALILGLAMNGLVEKSLNVFADMKKTKTLPNEITFMGVLGACRHMGLVDEGRRYFSSM 567

Query: 141 SDWELISWN-----CLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQ--DGDM 192
           +    I  N     C++    +  +L  A +L + M +  DV +W  ++    +  + +M
Sbjct: 568 TQEHKIEPNVKHYGCMVDLLGRAGLLKEAEELIESMPMAPDVATWGALLGACRKHHNNEM 627

Query: 193 SQ--AKNLFDQSPHQDVF 208
            +   + L    P  D F
Sbjct: 628 GERLGRKLIQLQPDHDGF 645


>Medtr4g031160.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:10600555-10597860 | 20130731
          Length = 839

 Score =  486 bits (1252), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 273/757 (36%), Positives = 417/757 (55%), Gaps = 79/757 (10%)

Query: 8   SALRVFNTM--PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN--------- 56
           +A  +F +M   +R  VSY+++IS +  N     A ++FD++  +D V  N         
Sbjct: 105 TAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIR 164

Query: 57  -----------------VMLTGY---------------VRNRRLGD---ARRLFDSMPQK 81
                            V+ TGY               V+   L D   AR++FD M +K
Sbjct: 165 ACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREK 224

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           +VV+W  M++  AQ GY DEA ++F +M     +S   +   +   G I     +     
Sbjct: 225 NVVTWTLMITRLAQYGYNDEAIDLFLEM----LVSSGYVPDRFTLTGLISVCAEIQFLSL 280

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
             EL SW       V R  L           V D+    +++  YA+ G + +A+ +FD 
Sbjct: 281 GKELHSW-------VIRSGL-----------VLDLCVGCSLVDMYAKCGLVQEARKVFDG 322

Query: 202 SPHQDVFTWTAMVSGYVQNG---MLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKM 254
               +V +WTA+V+GYV+ G     +  R F + + Q     N  +++ ++         
Sbjct: 323 MREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDF 382

Query: 255 DMARELFEAMPSRNVSSW----NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGY 310
           D   ++        +S+     N +++ Y ++G +  ARK FD++ +++ VS   +    
Sbjct: 383 DFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTN 442

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
            +  +     ++  E++  G  ++  T++  LS  A I  +  G+QIH  VVK G+ T  
Sbjct: 443 VKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDL 502

Query: 371 FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
            V NAL+ MY KCG+   A  VF  +E+ +V++W ++I G+A+HGF  +AL +F +M   
Sbjct: 503 SVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLET 562

Query: 431 GVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           GVKP+++T + VLSACSH GLID   ++F SM  ++ + P  +HY CM+DLLGR+G L E
Sbjct: 563 GVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSE 622

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAA 550
           A + + +MPF+  A  W   LG+ R+H NT+LGE AA+M+ + EPH+   Y+LLSNLYA 
Sbjct: 623 AIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYAT 682

Query: 551 SGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLK 610
            GRW D   +R  M+   + K  G SW+EV+N++HKF VGD  HP+  +IY  L+EL LK
Sbjct: 683 EGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALK 742

Query: 611 MRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDC 670
           ++  GYV +T  VLHDVE+E+KE  L  HSEKLAVAF +++ P  +PIRV KNLRVC DC
Sbjct: 743 IKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDC 802

Query: 671 HNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           H AIK+IS + GR I++RD++RFHH  +G CSC DYW
Sbjct: 803 HTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 143/290 (49%), Gaps = 24/290 (8%)

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDM 294
           I+ + ++   +++    + + L   + + N+       N++IT Y ++ D   A  +F  
Sbjct: 53  ITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQS 112

Query: 295 M--PQRDCVSWAAIISGYAQTGHYEEALNMFIE-IKRDGESLNRSTFSCALSTCADIAAL 351
           M   +RD VS+++IIS +A   +  +A+ MF + + +DG   N   F+  +  C      
Sbjct: 113 MENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFF 172

Query: 352 ELGKQIHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGE---ANDVFEGIEEKDVVSWNTM 407
           + G  + G V+KTGY ++   VG  L+ M+ K  S+ +   A  VF+ + EK+VV+W  M
Sbjct: 173 KTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM 232

Query: 408 IAGYARHGFGKQALMVF-ESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF-----YS 461
           I   A++G+  +A+ +F E + + G  PD  T+ G++S C+    +  G E         
Sbjct: 233 ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSG 292

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           +  D  V  S      ++D+  + G ++EA+ +   M  E    SW AL+
Sbjct: 293 LVLDLCVGCS------LVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALV 335


>Medtr5g095690.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:41831683-41828172 | 20130731
          Length = 811

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/738 (36%), Positives = 397/738 (53%), Gaps = 55/738 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDAR------------ 72
           N +++ Y+++     A  LFD+MPQ + +S+  +  GY R+ +   A             
Sbjct: 74  NILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHE 133

Query: 73  ----------RLFDSMP-----------------QKDVVSWNAMLSGYAQNGYADEAREV 105
                     +L  SM                    D     A++  Y+  G  D AR V
Sbjct: 134 VNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHV 193

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
           F  +  K+ +SW G++A Y  N   EE+ +LF+          N  + G +K  +   A 
Sbjct: 194 FDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAF 253

Query: 166 KLFDKMH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY 217
            +   +H          D+     ++  YA+ G++  A+ LF++ P  D+  W+ M++ Y
Sbjct: 254 NVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARY 313

Query: 218 VQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQ----SNKMDMARELFEAMP----SRNV 269
            Q+    EA   F +M Q + +  N   A  +Q    S  +D+ +++   +     + NV
Sbjct: 314 AQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNV 373

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
              N ++  Y + G+I  + KLF+ +P R+ V+W  II GY Q G  E A+N+F  +   
Sbjct: 374 FVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEH 433

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
                  T+S  L   A +AALE G QIH   +KT Y     V N+L+ MY KCG I +A
Sbjct: 434 DMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDA 493

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
              F+ + ++D VSWN MI GY+ HG   +AL +F+ M+    KP+++T VGVLSACS+A
Sbjct: 494 RLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNA 553

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
           GL+ +G  +F SM+KDY + P  +HYTCM+ LLGR GR +EA  L+  + ++P    W A
Sbjct: 554 GLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRA 613

Query: 510 LLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGV 569
           LLGA  IH   +LG   A+ V +MEPH+   +VLLSN+YA +GRW +   +R  M+   V
Sbjct: 614 LLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKV 673

Query: 570 QKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEE 629
           +K  G SWVE Q  +H F+VGD  HP+   I A LE L+ K R  GYV     VL DV++
Sbjct: 674 RKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQD 733

Query: 630 EEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRD 689
           +EKE  L  HSE+LA+A+G++  P    IR+IKNLR+C DCH  +K ISK+V R I++RD
Sbjct: 734 DEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRD 793

Query: 690 SHRFHHFNEGICSCGDYW 707
            +RFHHF  G+CSCGDYW
Sbjct: 794 INRFHHFRHGVCSCGDYW 811



 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 228/462 (49%), Gaps = 36/462 (7%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEAC----RLF 137
           D+ + N +L+ Y Q+    +A ++F +MP  N IS+  L   Y  + +  +A     R+F
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKL----FDKMHVRDVVSWNTMISGYAQDGDMS 193
               +     +  L+   V   +      L    +   H  D      +I  Y+  G++ 
Sbjct: 129 KEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVD 188

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNK 253
            A+++FD    +D+ +WT MV+ Y +N   +E+   F+QM        N  ++G ++S  
Sbjct: 189 VARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC- 247

Query: 254 MDMARELFEAMPSRNVSSWN-----------TMITGYGQNGDIAQARKLFDMMPQRDCVS 302
             +  E F    S +  +              ++  Y ++G+I  A++LF+ MP+ D + 
Sbjct: 248 --LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIP 305

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
           W+ +I+ YAQ+   +EAL++F+ +++     N  TF+  L  CA   +L+LGKQIH  V+
Sbjct: 306 WSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVL 365

Query: 363 KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALM 422
           K G  +  FV NA++ +Y KCG I  +  +FE + +++ V+WNT+I GY + G G++A+ 
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMN 425

Query: 423 VFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM------NKDYSVTPSSKHYT 476
           +F  M    ++P E+T   VL A +    ++ G +  +S+      NKD  V  S     
Sbjct: 426 LFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQ-IHSLTIKTMYNKDTVVANS----- 479

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
            +ID+  + GR+ +A+     M  +    SW A++    +HG
Sbjct: 480 -LIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMHG 519



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 192/436 (44%), Gaps = 65/436 (14%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVS--- 54
           G+ D A  VF+ +  +  VS+  M++ Y  N  +  +  LF++M      P    +S   
Sbjct: 185 GNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGAL 244

Query: 55  --------WNV----------------------MLTGYVRNRRLGDARRLFDSMPQKDVV 84
                   +NV                      +L  Y ++  + DA+RLF+ MP+ D++
Sbjct: 245 KSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLI 304

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHN---------GRIEEACR 135
            W+ M++ YAQ+  + EA ++F +M   + +  N   A+ +           G+   +C 
Sbjct: 305 PWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCV 364

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           L    +    +S N +M  + K   +  + KLF+++  R+ V+WNT+I GY Q GD  +A
Sbjct: 365 LKFGLNSNVFVS-NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423

Query: 196 KNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
            NLF      D+     T+++++        L+            M  K+ +  N+++  
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC----VSW 303
           Y +  +++ AR  F+ M  R+  SWN MI GY  +G   +A  LFDMM   DC    +++
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADIAALELGKQIHGQVV 362
             ++S  +  G   +    F  + +D +       ++C +     +   +   ++ G++ 
Sbjct: 544 VGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEI- 602

Query: 363 KTGYETGCFVGNALLG 378
              Y+    V  ALLG
Sbjct: 603 --AYQPSVMVWRALLG 616



 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 133/273 (48%), Gaps = 15/273 (5%)

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
           S ++ + N ++  Y Q+  +  A KLFD MPQ + +S+  +  GY++   + +AL+  + 
Sbjct: 67  SLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILR 126

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           I ++G  +N   F+  L     +    L   +H  V K G+    FVG AL+  Y   G+
Sbjct: 127 IFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGN 186

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           +  A  VF+ I  KD+VSW  M+A YA + F +++L +F  M+ +G KP+  T+ G L +
Sbjct: 187 VDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246

Query: 446 CS-----HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
           C      + G    G       + D  V  +      +++L  ++G + +AQ L   MP 
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIA------LLELYAKSGEIIDAQRLFEEMP- 299

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           +     W  ++     +  ++  ++A ++  +M
Sbjct: 300 KTDLIPWSLMIAR---YAQSDRSKEALDLFLRM 329



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 156/332 (46%), Gaps = 26/332 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV---- 57
           ++G    A R+F  MP+   + ++ MI+ Y ++ R   A DLF +M Q  +V  N     
Sbjct: 284 KSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFAS 343

Query: 58  MLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           +L     +  L   +++   + +     +V   NA++  YA+ G  + + ++F ++P +N
Sbjct: 344 VLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRN 403

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVKRKMLGAARKL-- 167
            ++WN ++  YV  G  E A  LF    + ++    ++++ ++        L    ++  
Sbjct: 404 DVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHS 463

Query: 168 --FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
                M+ +D V  N++I  YA+ G ++ A+  FD+   +D  +W AM+ GY  +GM  E
Sbjct: 464 LTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSME 523

Query: 226 ARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMI 276
           A   FD M     + N++++  +++    +  +   +  FE+M         +  +  M+
Sbjct: 524 ALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMV 583

Query: 277 TGYGQNGDIAQARKLF-DMMPQRDCVSWAAII 307
              G+ G   +A KL  ++  Q   + W A++
Sbjct: 584 WLLGRLGRFDEAMKLIGEIAYQPSVMVWRALL 615



 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 13  FNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDAR 72
             TM  + +V  N++I  Y +  R + AR  FDKM +RD VSWN M+ GY  +    +A 
Sbjct: 466 IKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEAL 525

Query: 73  RLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMP----------HKNAISWN 118
            LFD M   D     +++  +LS  +  G   + +  F  M           H   + W 
Sbjct: 526 NLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVW- 584

Query: 119 GLLAAYVHNGRIEEACRLF-DSKSDWELISWNCLMGGFVKRKMLGAAR 165
            LL      GR +EA +L  +      ++ W  L+G  V  K +   R
Sbjct: 585 -LLGRL---GRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGR 628


>Medtr3g029530.1 | pentatricopeptide (PPR) repeat protein | HC |
            chr3:9292413-9288471 | 20130731
          Length = 1125

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/725 (35%), Positives = 409/725 (56%), Gaps = 26/725 (3%)

Query: 7    DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNVMLTGY 62
            + A RVFN M  R ++S+N++I+    N RF  +   F  M    P+ D ++ + +L   
Sbjct: 403  EEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPAC 462

Query: 63   VRNRRLGDARRLF----DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
               + L   R L      S  + +V   N++LS YAQ G +++A  VF+ MP ++ ISWN
Sbjct: 463  GSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWN 522

Query: 119  GLLAAYVHNGRIEEACRLF----DSKSDWELISWNCLMGG---FVKRKMLGAARKLFDKM 171
             ++A++V +G+   A  L      ++     +++   +       K K++ A    F   
Sbjct: 523  SMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVH 582

Query: 172  HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
            H  +++  NT+++ Y + G M +A+ +    P +DV TW A++ G+  +   +     F+
Sbjct: 583  H--NLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFN 640

Query: 232  QMPQKNEISY---------NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQN 282
             M ++  +S            M   Y+  + M +   +  A    +    +++IT Y Q 
Sbjct: 641  LMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQC 700

Query: 283  GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
            GD+  +  +FD++  ++  +W AI S  A  G  EEAL     ++ DG  L++ +FS AL
Sbjct: 701  GDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVAL 760

Query: 343  STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
            +T  ++  L+ G+Q+H  ++K G+E   +V NA + MY KCG I +   +    + +   
Sbjct: 761  ATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKR 820

Query: 403  SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
            SWN +I+  ARHGF +QA   F  M  +G+KPD +T V +LSACSH GL+D G  YF SM
Sbjct: 821  SWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSM 880

Query: 463  NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTEL 522
              ++ V  + +H  C+IDLLGR+GRL EA+  +  MP  P    W +LL A ++HGN EL
Sbjct: 881  TSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLEL 940

Query: 523  GEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
            G KAA+ +F++   +   YVL SN+ A++ RW D  N+R +M    ++K    SW++++N
Sbjct: 941  GRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKN 1000

Query: 583  KIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEK 642
            K+  F +GD FHP+  +IYA LEEL    R EG++  T   L D +EE+KEH L  HSE+
Sbjct: 1001 KVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSER 1060

Query: 643  LAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICS 702
            +A+AFG++    G P+R+ KNLRVC DCH+  K +SKIVGR I++RDS+RFHHF+ G CS
Sbjct: 1061 IALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCS 1120

Query: 703  CGDYW 707
            C DYW
Sbjct: 1121 CSDYW 1125



 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/573 (23%), Positives = 250/573 (43%), Gaps = 67/573 (11%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV----ML 59
           G    A  VF+ M  R+  S+N MISG++R   +  A   F  M +  +   +     M+
Sbjct: 196 GSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMV 255

Query: 60  TGYVRNRRLGDARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           T   R+  + +  R       K     +V    ++L  Y  +G   EA ++F ++   N 
Sbjct: 256 TACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNI 315

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKR-----------KMLGA 163
           +SW  L+  Y  NG  +E   ++       LI     M   ++            ++LG 
Sbjct: 316 VSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGD 375

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
             K    +    V   N++IS +     + +A  +F+    +D  +W ++++    NG  
Sbjct: 376 VIK--SGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRF 433

Query: 224 DEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTM 275
           +E+   F  M    P+ + I+ +A++     +  +   R L   +       NV   N++
Sbjct: 434 EESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSL 493

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           ++ Y Q G    A  +F  MP RD +SW ++++ + + G Y  A+ + +E+ +  +++N 
Sbjct: 494 LSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNY 553

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            TF+ ALS C ++  L++   +H  V+         +GN L+ MY K G + EA  V + 
Sbjct: 554 VTFTTALSACYNLEKLKI---VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKI 610

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS-------- 447
           + E+DVV+WN +I G+A        +  F  M+  G+  + IT+V +L  C         
Sbjct: 611 MPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKH 670

Query: 448 ----HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ---DLMRNMPF 500
               HA ++  G E       D  V  S      +I +  + G L  +    D++ N   
Sbjct: 671 GMPIHAHIVVAGFEL------DTYVQSS------LITMYAQCGDLNTSSYIFDVLAN--- 715

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
              +++W A+  A+  +G    GE+A + + +M
Sbjct: 716 -KNSSTWNAIFSANAHYGP---GEEALKFIARM 744



 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/483 (23%), Positives = 218/483 (45%), Gaps = 54/483 (11%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q++    N ++  Y +   +  A+ +FD M  ++  SWN M+SG+ + G+  +A + F  
Sbjct: 179 QQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCH 238

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           M  +N ++ +  + A +        C    ++           + G+V +  L       
Sbjct: 239 M-FENGVTPSSYVIASMVTACDRSGCMTEGARQ----------IHGYVVKCGL------- 280

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
               + +V    +++  Y   G +S+A  LF++    ++ +WT+++  Y  NG   E   
Sbjct: 281 ----MSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLN 336

Query: 229 FFDQMPQKNEISYNAMVAGYVQSNKM----DMARELF-----EAMPSRNVSSWNTMITGY 279
            +  +     I     +A  +++  M     M  ++        + + +VS  N++I+ +
Sbjct: 337 IYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMF 396

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
           G    + +A ++F+ M +RD +SW +II+  A  G +EE+L  F  ++R     +  T S
Sbjct: 397 GNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITIS 456

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             L  C     L+ G+ +HG + K+G E+   V N+LL MY + GS  +A  VF  +  +
Sbjct: 457 ALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPAR 516

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           D++SWN+M+A +   G    A+++   M       + +T    LSAC             
Sbjct: 517 DLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC------------- 563

Query: 460 YSMNKDYSVTPSSKHYTC---------MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           Y++ K   V     H+           ++ + G+ G ++EAQ + + MP E    +W AL
Sbjct: 564 YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNAL 622

Query: 511 LGA 513
           +G 
Sbjct: 623 IGG 625



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/448 (20%), Positives = 188/448 (41%), Gaps = 35/448 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNVML 59
           G  + A  VF+TMP R  +S+N+M++ ++ + ++S A  L  +M +     + V++   L
Sbjct: 501 GSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTAL 560

Query: 60  TGYVRNRRLGDARRLFDSMP-QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           +      +L              +++  N +++ Y + G  DEA++V   MP ++ ++WN
Sbjct: 561 SACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWN 620

Query: 119 GLLAAYVHNGRIEEACRLFDSKSDWELIS---------WNCLMGGFVKRKMLGAARKLFD 169
            L+  +  +       + F+      L+S           C+   ++ +  +     +  
Sbjct: 621 ALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVV 680

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
                D    +++I+ YAQ GD++ +  +FD   +++  TW A+ S     G  +EA  F
Sbjct: 681 AGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKF 740

Query: 230 FDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGYGQ 281
             +M       ++ S++  +A       +D  ++L   +            N  +  YG+
Sbjct: 741 IARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGK 800

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
            G+I    ++  +   R   SW  +IS  A+ G + +A   F E+   G   +  TF   
Sbjct: 801 CGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSL 860

Query: 342 LSTCADIAALELGKQIHGQVV-KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           LS C+    ++ G      +  + G  T       ++ +  + G + EA    EG  +K 
Sbjct: 861 LSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEA----EGFIDKM 916

Query: 401 VVS-----WNTMIAGYARHG---FGKQA 420
            V      W +++A    HG    G++A
Sbjct: 917 PVPPNEFVWRSLLAACKVHGNLELGRKA 944



 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 1/176 (0%)

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
           ++I+   +GK +H   VK   +   F  N L+ MY K GSI  A  VF+ + +++  SWN
Sbjct: 158 SEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWN 217

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD 465
            MI+G+ R G+  +A+  F  M   GV P    +  +++AC  +G +  G    +     
Sbjct: 218 NMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVK 277

Query: 466 YSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
             +  +    T ++   G  G + EA  L   +  EP   SW +L+     +G+T+
Sbjct: 278 CGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIE-EPNIVSWTSLMVCYADNGHTK 332


>Medtr6g032915.1 | pentatricopeptide (PPR) repeat protein | HC |
            chr6:10235820-10240817 | 20130731
          Length = 1144

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 277/812 (34%), Positives = 421/812 (51%), Gaps = 127/812 (15%)

Query: 1    MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVS 54
             +NG   SA +VF  +  R SVS+ AMISG  +N     A  LF +M      P   + S
Sbjct: 229  FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQMHTSGICPTPYIFS 288

Query: 55   ---------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQK 81
                                              N ++T Y R+  L  A ++F  M Q+
Sbjct: 289  SVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR 348

Query: 82   DVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLF 137
            D VS+N+++SG AQ GY + A  +F +M       + ++   LL+A    G +    + F
Sbjct: 349  DRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG-KQF 407

Query: 138  DSKS-----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
             S +       +++    L+  +VK   +  A + F      +VV WN M+ GY Q  ++
Sbjct: 408  HSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLACETENVVLWNVMLVGYGQLDNL 467

Query: 193  SQAKNLFDQ------SPHQ---------------------------------DVFTWTAM 213
            +++  +F Q       P+Q                                 +V+  + +
Sbjct: 468  NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVL 527

Query: 214  VSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS-- 271
            +  Y ++G LD A   F ++ + + +S+ AM+AGY Q +K   A  LF+ M  + + S  
Sbjct: 528  IDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDN 587

Query: 272  -------------------------------------WNTMITGYGQNGDIAQARKLFDM 294
                                                  N +++ Y + G + +A   FD 
Sbjct: 588  IGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQ 647

Query: 295  MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
            +  +D VSW +++SG+AQ+G++EEALN+F ++ + G  +N  TF  A+S  A+IA + +G
Sbjct: 648  IYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIG 707

Query: 355  KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
            KQIHG + KTGY++   V NAL+ +Y KCG+I +A   F  + +K+ +SWN+MI GY++H
Sbjct: 708  KQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDAERHFFEMPDKNEISWNSMITGYSQH 767

Query: 415  GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKH 474
            G G +AL +FE MK + V P+ +T VGVLSACSH GL+D G  YF SM++ +++ P  +H
Sbjct: 768  GCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEH 827

Query: 475  YTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
            Y C++DLLGR+G L  A+  +  MP +P A  W  LL A  +H N ++GE AA  + ++E
Sbjct: 828  YACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELE 887

Query: 535  PHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFH 594
            P +S  YVL+SN+YA SG+W      R  M+D GV+K  G SWVEV N +H F  GD  H
Sbjct: 888  PKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNH 947

Query: 595  PEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPA 654
            P  D IY +L  LD +    GYV     +L D E  +K+     HSE+LA+AFG+L++ +
Sbjct: 948  PRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTS 1007

Query: 655  GRPIRVIKNLRVCEDCHNAIKHISKIVGRLII 686
              P+ V KNLRVCEDCHN IKH+SKI  R+II
Sbjct: 1008 STPLYVFKNLRVCEDCHNWIKHVSKITDRVII 1039



 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 171/645 (26%), Positives = 289/645 (44%), Gaps = 109/645 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL----------- 52
           G  + A+ VF+ MP RS   +N + + ++          LF +M  +++           
Sbjct: 130 GDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVL 189

Query: 53  -------VSW----------------------NVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                  VS+                      N ++  Y +N  L  A+++F+++  +D 
Sbjct: 190 RGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDS 249

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS-----WNGLLAAYVHNGRIEEACRL-- 136
           VSW AM+SG +QNGY +EA  +F QM H + I      ++ +L+A       E   +L  
Sbjct: 250 VSWVAMISGLSQNGYEEEAMLLFCQM-HTSGICPTPYIFSSVLSACTKVEFFEFGKQLHG 308

Query: 137 --FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
                    E    N L+  + +   L +A ++F  M  RD VS+N++ISG AQ G +++
Sbjct: 309 LVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINR 368

Query: 195 AKNLFD------QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG- 247
           A  LF       Q P  D  T  +++S     G L   +  F     K  ++ + +V G 
Sbjct: 369 ALALFKKMNLDCQKP--DCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGS 425

Query: 248 ----YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSW 303
               YV+ + +  A E F A  + NV  WN M+ GYGQ  ++                  
Sbjct: 426 LLDLYVKCSDIKTAHEFFLACETENVVLWNVMLVGYGQLDNL------------------ 467

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVK 363
                         ++  +F +++ +G   N+ T+   L TC  + A +LG+QIH QV+K
Sbjct: 468 -------------NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLK 514

Query: 364 TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV 423
           TG++   +V + L+ MY K G +  A  +F  ++E DVVSW  MIAGY +H    +AL +
Sbjct: 515 TGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNL 574

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLL 482
           F+ M+  G+K D I     +SAC+    +D+G + +  S    YS   S  +   ++ L 
Sbjct: 575 FKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGN--ALVSLY 632

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG--EKAAEMVFKMEPHNSGM 540
            R G++ EA      + +     SW +L     + G  + G  E+A  +  +M  + +G+
Sbjct: 633 ARCGKVREAYAAFDQI-YAKDNVSWNSL-----VSGFAQSGYFEEALNIFAQM--NKAGL 684

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY-SWVEVQNKI 584
            +      +A    A+  N+R   +  G+ + TGY S  EV N +
Sbjct: 685 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNAL 729



 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 231/488 (47%), Gaps = 37/488 (7%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           +L G + +R   D  +L   + +     +VV    ++  Y   G  + A  VF +MP ++
Sbjct: 87  LLEGCLNSRSFYDGLKLHGKILKMGFCDEVVLCERLIDFYLAFGDLNCAVNVFDEMPIRS 146

Query: 114 AISWNGLLAAYVHN---GRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR--KLF 168
              WN +   ++     GR+    R   +K+    + ++  +   V R   G A   +  
Sbjct: 147 LSCWNRIFNTFIAERLMGRVPGLFRRMLTKN----VEFDERIFAVVLRGCSGNAVSFRFV 202

Query: 169 DKMHVRDVVS--------WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           +++H + + S         N +I  Y ++G +S AK +F+    +D  +W AM+SG  QN
Sbjct: 203 EQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQN 262

Query: 221 GMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----W 272
           G  +EA   F QM           ++++++   +    +  ++L   +  +  SS     
Sbjct: 263 GYEEEAMLLFCQMHTSGICPTPYIFSSVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVC 322

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N ++T Y ++G+++ A ++F  M QRD VS+ ++ISG AQ G+   AL +F ++  D + 
Sbjct: 323 NALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQK 382

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            +  T +  LS CA + AL  GKQ H   +K G  +   V  +LL +Y KC  I  A++ 
Sbjct: 383 PDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEF 442

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F   E ++VV WN M+ GY +     ++  +F  M+  G+ P++ T   +L  C+  G  
Sbjct: 443 FLACETENVVLWNVMLVGYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGAT 502

Query: 453 DRGTEYFYSMNK---DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
           D G +    + K    ++V  SS     +ID+  + G+L+ A  + R +  E    SW A
Sbjct: 503 DLGEQIHTQVLKTGFQFNVYVSS----VLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTA 557

Query: 510 LLGASRIH 517
           ++     H
Sbjct: 558 MIAGYTQH 565



 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 14/232 (6%)

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +++ G   N  TF   L  C +  +   G ++HG+++K G+     +   L+  Y   G 
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLHGKILKMGFCDEVVLCERLIDFYLAFGD 131

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           +  A +VF+ +  + +  WN +   +       +   +F  M T  V+ DE     VL  
Sbjct: 132 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 191

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC--MIDLLGRAGRLEEAQDLMRNMPFEPP 503
           CS   +  R  E  ++  K  +    S  + C  +IDL  + G L  A+ +  N+     
Sbjct: 192 CSGNAVSFRFVEQIHA--KTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLK-ARD 248

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM----YVLLSNLYAAS 551
           + SW A+     I G ++ G +   M+   + H SG+    Y+  S L A +
Sbjct: 249 SVSWVAM-----ISGLSQNGYEEEAMLLFCQMHTSGICPTPYIFSSVLSACT 295


>Medtr7g083820.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:32273955-32271537 | 20130731
          Length = 672

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/634 (40%), Positives = 377/634 (59%), Gaps = 29/634 (4%)

Query: 103 REVFYQMPHKNAI-SWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVK 157
           R +F +   K ++ SWN ++A +  +G   +A   F S     L     ++ C +     
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 158 RKMLGAARKLFDKMHV----RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAM 213
              L A +++  +  V     D+   + +I  Y++ G ++ A+ LFD+ P ++V +WT+M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 214 VSGYVQNGMLDEARTFFDQMPQKNEISYN-----------AMVAGYVQSNKMDMARELFE 262
           +SGYVQN    EA   F +    +E  Y+            ++   + +      + + E
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 263 AMPSRNV--------SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
            +    V        +  NT++  Y + G+I+ +RK+FD M + D  SW ++I+ YAQ G
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 315 HYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
              EA ++F ++ + GE   N  T S  L  CA   AL++GK IH QVVK   E    VG
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
            +++ MY KCG +  A   F+ ++ K+V SW  M+AGY  HG GK+A+ VF  M   G+K
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           P+ IT V VL+ACSHAGL+  G  +F  M  ++ V P  +HY+CM+DLLGRAG L+EA  
Sbjct: 399 PNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYG 458

Query: 494 LMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGR 553
           L++ M  +P    WG+LLGA RIH N ELGE +A  +FK++P N G YVLLSN+YA +GR
Sbjct: 459 LIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGR 518

Query: 554 WADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRR 613
           W D   MR  M++ G+ K  GYS VE + ++H F VGD  HP+ ++IY +L+EL++K++ 
Sbjct: 519 WDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQE 578

Query: 614 EGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNA 673
            GY+ +   VL+DV+ EEK  +L+ HSEKLAVAFGI+    G  I++IKNLR+C DCH A
Sbjct: 579 VGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFA 638

Query: 674 IKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           IK ISKIV R I++RDS RFHHF +G+CSCGDYW
Sbjct: 639 IKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 235/529 (44%), Gaps = 91/529 (17%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-- 139
           D+   +A++  Y++ GY ++AR++F ++P +N +SW  +++ YV N R  EA  LF    
Sbjct: 120 DIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL 179

Query: 140 ---KSDWELISW------NCLMGGFVKRKMLGAARKLFDKMHVRDV--------VSWNTM 182
              ++D++ I        + L+G  +        + + + +H   V           NT+
Sbjct: 180 LVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTL 239

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN 242
           +  YA+ G++S ++ +FD     DV +W ++++ Y QNG+  EA + F  M ++ E+ YN
Sbjct: 240 MDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYN 299

Query: 243 AMVAGYV-----QSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFD 293
           A+    V      S  + + + + + +       N+    +++  Y + G +  ARK FD
Sbjct: 300 AVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFD 359

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            + +++  SW  +++GY   GH +EA+ +F E+ R G   N  TF   L+ C+       
Sbjct: 360 RLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS------- 412

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYF---KCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
               H  ++K G+             +F   KC       DV  GIE      ++ M+  
Sbjct: 413 ----HAGLLKEGWH------------WFNKMKC-----EFDVEPGIEH-----YSCMVDL 446

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP 470
             R G+ K+A  + + MK   VKPD I    +L AC     ++ G     S  K + + P
Sbjct: 447 LGRAGYLKEAYGLIQEMK---VKPDFIVWGSLLGACRIHKNVELGE---ISARKLFKLDP 500

Query: 471 SS-KHYTCMIDLLGRAGR---LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
           S+  +Y  + ++   AGR   +E  + LM+N              G  +  G + +  K 
Sbjct: 501 SNCGYYVLLSNIYADAGRWDDVERMRILMKNH-------------GLLKTPGYSIVEHKG 547

Query: 527 AEMVF----KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
              VF    K  P +  +Y  L  L           N+ S + DV V++
Sbjct: 548 RVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE 596



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 177/402 (44%), Gaps = 74/402 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD---------- 51
           + G+ + A ++F+ +P R+ VS+ +MISGY++N R   A  LF +    D          
Sbjct: 133 KCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGV 192

Query: 52  ----------------------------------------LVSWNVMLTGYVRNRRLGDA 71
                                                   L   N ++  Y +   +  +
Sbjct: 193 GVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVS 252

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK-----NAISWNGLLAAYVH 126
           R++FD M + DV SWN++++ YAQNG + EA  +F  M  +     NA++ + +L A  H
Sbjct: 253 RKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAH 312

Query: 127 NGRIEEACRLFDSKSDWE----LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
           +G ++    + D     E    L+    ++  + K   +  ARK FD++  ++V SW  M
Sbjct: 313 SGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVM 372

Query: 183 ISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
           ++GY   G   +A  +F +        +  T+ ++++     G+L E   +F++M  + +
Sbjct: 373 VAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFD 432

Query: 239 IS-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITG--YGQNGDIAQ--A 288
           +      Y+ MV    ++  +  A  L + M  + +   W +++      +N ++ +  A
Sbjct: 433 VEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISA 492

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           RKLF + P  +C  +  + + YA  G +++   M I +K  G
Sbjct: 493 RKLFKLDPS-NCGYYVLLSNIYADAGRWDDVERMRILMKNHG 533



 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 286 AQARKLFDMMPQRDCV-SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           A  R +F     +  V SW +II+ +A++G   +AL  F  +++     NRSTF C + +
Sbjct: 36  ANLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKS 95

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           C+ +  L  GKQIH Q    GY +  FV +AL+ MY KCG + +A  +F+ I E++VVSW
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW 155

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIG-----------VKPDEITMVGVLSACSHAGLID 453
            +MI+GY ++   ++A+ +F+    +            V  D + +  V+SAC+    + 
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-CVK 214

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
             TE  + +               ++D   + G +  ++ +   M  E    SW +L+  
Sbjct: 215 SVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIAV 273



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 69/352 (19%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLF--------- 75
           +A+I  Y +    + AR LFD++P+R++VSW  M++GYV+N R  +A  LF         
Sbjct: 125 SALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDET 184

Query: 76  ------------DSMPQKDVVSW-----------------------------NAMLSGYA 94
                       DS+    V+S                              N ++  YA
Sbjct: 185 DYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYA 244

Query: 95  QNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-----KSDWELISWN 149
           + G    +R+VF  M   +  SWN L+A Y  NG   EA  LF       +  +  ++ +
Sbjct: 245 KCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLS 304

Query: 150 CLMGGFVKRKMLGAARKLFD---KMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQ 205
            ++        L   + + D   KM + D +V   +++  Y + G +  A+  FD+   +
Sbjct: 305 AVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRK 364

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELF 261
           +V +WT MV+GY  +G   EA   F +M     + N I++ +++A    +  +      F
Sbjct: 365 NVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWF 424

Query: 262 EAMPSR-----NVSSWNTMITGYGQNGDIAQARKLF-DMMPQRDCVSWAAII 307
             M         +  ++ M+   G+ G + +A  L  +M  + D + W +++
Sbjct: 425 NKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476


>Medtr7g083820.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:32273955-32271537 | 20130731
          Length = 672

 Score =  483 bits (1244), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/634 (40%), Positives = 377/634 (59%), Gaps = 29/634 (4%)

Query: 103 REVFYQMPHKNAI-SWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVK 157
           R +F +   K ++ SWN ++A +  +G   +A   F S     L     ++ C +     
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 158 RKMLGAARKLFDKMHV----RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAM 213
              L A +++  +  V     D+   + +I  Y++ G ++ A+ LFD+ P ++V +WT+M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 214 VSGYVQNGMLDEARTFFDQMPQKNEISYN-----------AMVAGYVQSNKMDMARELFE 262
           +SGYVQN    EA   F +    +E  Y+            ++   + +      + + E
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 263 AMPSRNV--------SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
            +    V        +  NT++  Y + G+I+ +RK+FD M + D  SW ++I+ YAQ G
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 315 HYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
              EA ++F ++ + GE   N  T S  L  CA   AL++GK IH QVVK   E    VG
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
            +++ MY KCG +  A   F+ ++ K+V SW  M+AGY  HG GK+A+ VF  M   G+K
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK 398

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           P+ IT V VL+ACSHAGL+  G  +F  M  ++ V P  +HY+CM+DLLGRAG L+EA  
Sbjct: 399 PNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYG 458

Query: 494 LMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGR 553
           L++ M  +P    WG+LLGA RIH N ELGE +A  +FK++P N G YVLLSN+YA +GR
Sbjct: 459 LIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGR 518

Query: 554 WADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRR 613
           W D   MR  M++ G+ K  GYS VE + ++H F VGD  HP+ ++IY +L+EL++K++ 
Sbjct: 519 WDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQE 578

Query: 614 EGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNA 673
            GY+ +   VL+DV+ EEK  +L+ HSEKLAVAFGI+    G  I++IKNLR+C DCH A
Sbjct: 579 VGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHFA 638

Query: 674 IKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           IK ISKIV R I++RDS RFHHF +G+CSCGDYW
Sbjct: 639 IKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/529 (24%), Positives = 235/529 (44%), Gaps = 91/529 (17%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-- 139
           D+   +A++  Y++ GY ++AR++F ++P +N +SW  +++ YV N R  EA  LF    
Sbjct: 120 DIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL 179

Query: 140 ---KSDWELISW------NCLMGGFVKRKMLGAARKLFDKMHVRDV--------VSWNTM 182
              ++D++ I        + L+G  +        + + + +H   V           NT+
Sbjct: 180 LVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTL 239

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN 242
           +  YA+ G++S ++ +FD     DV +W ++++ Y QNG+  EA + F  M ++ E+ YN
Sbjct: 240 MDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYN 299

Query: 243 AMVAGYV-----QSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFD 293
           A+    V      S  + + + + + +       N+    +++  Y + G +  ARK FD
Sbjct: 300 AVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFD 359

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            + +++  SW  +++GY   GH +EA+ +F E+ R G   N  TF   L+ C+       
Sbjct: 360 RLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS------- 412

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYF---KCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
               H  ++K G+             +F   KC       DV  GIE      ++ M+  
Sbjct: 413 ----HAGLLKEGWH------------WFNKMKC-----EFDVEPGIEH-----YSCMVDL 446

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP 470
             R G+ K+A  + + MK   VKPD I    +L AC     ++ G     S  K + + P
Sbjct: 447 LGRAGYLKEAYGLIQEMK---VKPDFIVWGSLLGACRIHKNVELGE---ISARKLFKLDP 500

Query: 471 SS-KHYTCMIDLLGRAGR---LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
           S+  +Y  + ++   AGR   +E  + LM+N              G  +  G + +  K 
Sbjct: 501 SNCGYYVLLSNIYADAGRWDDVERMRILMKNH-------------GLLKTPGYSIVEHKG 547

Query: 527 AEMVF----KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
              VF    K  P +  +Y  L  L           N+ S + DV V++
Sbjct: 548 RVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEE 596



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 177/402 (44%), Gaps = 74/402 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD---------- 51
           + G+ + A ++F+ +P R+ VS+ +MISGY++N R   A  LF +    D          
Sbjct: 133 KCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGV 192

Query: 52  ----------------------------------------LVSWNVMLTGYVRNRRLGDA 71
                                                   L   N ++  Y +   +  +
Sbjct: 193 GVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVS 252

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK-----NAISWNGLLAAYVH 126
           R++FD M + DV SWN++++ YAQNG + EA  +F  M  +     NA++ + +L A  H
Sbjct: 253 RKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAH 312

Query: 127 NGRIEEACRLFDSKSDWE----LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
           +G ++    + D     E    L+    ++  + K   +  ARK FD++  ++V SW  M
Sbjct: 313 SGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVM 372

Query: 183 ISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
           ++GY   G   +A  +F +        +  T+ ++++     G+L E   +F++M  + +
Sbjct: 373 VAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFD 432

Query: 239 IS-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITG--YGQNGDIAQ--A 288
           +      Y+ MV    ++  +  A  L + M  + +   W +++      +N ++ +  A
Sbjct: 433 VEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISA 492

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           RKLF + P  +C  +  + + YA  G +++   M I +K  G
Sbjct: 493 RKLFKLDPS-NCGYYVLLSNIYADAGRWDDVERMRILMKNHG 533



 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 14/240 (5%)

Query: 286 AQARKLFDMMPQRDCV-SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           A  R +F     +  V SW +II+ +A++G   +AL  F  +++     NRSTF C + +
Sbjct: 36  ANLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKS 95

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           C+ +  L  GKQIH Q    GY +  FV +AL+ MY KCG + +A  +F+ I E++VVSW
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSW 155

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIG-----------VKPDEITMVGVLSACSHAGLID 453
            +MI+GY ++   ++A+ +F+    +            V  D + +  V+SAC+    + 
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-CVK 214

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
             TE  + +               ++D   + G +  ++ +   M  E    SW +L+  
Sbjct: 215 SVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIAV 273



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 69/352 (19%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLF--------- 75
           +A+I  Y +    + AR LFD++P+R++VSW  M++GYV+N R  +A  LF         
Sbjct: 125 SALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDET 184

Query: 76  ------------DSMPQKDVVSW-----------------------------NAMLSGYA 94
                       DS+    V+S                              N ++  YA
Sbjct: 185 DYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYA 244

Query: 95  QNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-----KSDWELISWN 149
           + G    +R+VF  M   +  SWN L+A Y  NG   EA  LF       +  +  ++ +
Sbjct: 245 KCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLS 304

Query: 150 CLMGGFVKRKMLGAARKLFD---KMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQ 205
            ++        L   + + D   KM + D +V   +++  Y + G +  A+  FD+   +
Sbjct: 305 AVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRK 364

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELF 261
           +V +WT MV+GY  +G   EA   F +M     + N I++ +++A    +  +      F
Sbjct: 365 NVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWF 424

Query: 262 EAMPSR-----NVSSWNTMITGYGQNGDIAQARKLF-DMMPQRDCVSWAAII 307
             M         +  ++ M+   G+ G + +A  L  +M  + D + W +++
Sbjct: 425 NKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLL 476


>Medtr4g113240.1 | pentatricopeptide (PPR) repeat protein | HC |
            chr4:46542320-46539266 | 20130731
          Length = 1017

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 282/743 (37%), Positives = 432/743 (58%), Gaps = 43/743 (5%)

Query: 2    RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN----- 56
            R G  D A  +F  M  R++V+ N ++ G  R  +   A  +F +M  +DLV  N     
Sbjct: 281  RYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM--KDLVEINSESLV 338

Query: 57   VMLTGYVRNRRLGDARR--------LFDS-MPQKDVVSWNAMLSGYAQNGYADEAREVFY 107
            V+L+ +     L + +R        LF S +    +   NA+++ Y +    D A  VF 
Sbjct: 339  VLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQ 398

Query: 108  QMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-------KSDWELISW--NCLMGGFVK- 157
             MP K+ +SWN +++   HN R EEA   F +        S++ +IS   +C   G++  
Sbjct: 399  LMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 458

Query: 158  -RKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
             R++ G   K    +   DV   N +++ YA+   +++ + +F Q P  D  +W + +  
Sbjct: 459  GRQIHGEGFKWGLDL---DVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 515

Query: 217  YVQ-NGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS 271
              +    + +A  +F +M Q     N +++  ++A     + + +  ++   +   +V+ 
Sbjct: 516  LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVAD 575

Query: 272  ----WNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISGYAQTGHYEEALNMFIEI 326
                 N ++  YG+   +     +F  M +R D VSW ++ISGY  +G   +A+++   +
Sbjct: 576  DNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPM 635

Query: 327  KRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSI 386
             + G+ L+  TF+  LS CA +A LE G ++H   V+   E+   VG+AL+ MY KCG I
Sbjct: 636  MQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKI 695

Query: 387  GEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
              A+  FE +  +++ SWN+MI+GYARHG G++AL +F  MK  G  PD +T VGVLSAC
Sbjct: 696  DYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSAC 755

Query: 447  SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS 506
            SH GL+D G ++F SM + Y ++P  +H++CM+DLLGRAG +++ +D ++ MP +P    
Sbjct: 756  SHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILI 815

Query: 507  WGALLGA-SRIHG-NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRM 564
            W  +LGA  R +G NTELG++AA+M+ ++EP N+  YVLLSN++AA G W D    R  M
Sbjct: 816  WRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAM 875

Query: 565  RDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVL 624
            R   V+K  G SWV +++ +H F  GD  HPEK++IY  L+EL  K+R  GYV  TK  L
Sbjct: 876  RKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYAL 935

Query: 625  HDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRL 684
            +D+E E KE +L YHSEKLA+AF +LT  +  PIR++KNLRVC DCH A K+ISKIVGR 
Sbjct: 936  YDLELENKEELLSYHSEKLAIAF-VLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQ 994

Query: 685  IILRDSHRFHHFNEGICSCGDYW 707
            IILRDS+RFHHF  G+CSCGDYW
Sbjct: 995  IILRDSNRFHHFGGGMCSCGDYW 1017



 Score =  196 bits (498), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 151/589 (25%), Positives = 261/589 (44%), Gaps = 116/589 (19%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+   N ++  YVR   L  AR+LFD MPQK++VSW+ ++SGY QN   DEA  +F    
Sbjct: 57  DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLF---- 112

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSK----------------SDWELISWNCLMGG 154
            K  IS +GLL  +   G    AC+   S                    ++I  N LM  
Sbjct: 113 -KGVIS-SGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 170

Query: 155 FVK-RKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----------DQSP 203
           +      +  A ++FD++  R+ V+WN++IS Y + GD   A  LF          +  P
Sbjct: 171 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRP 230

Query: 204 HQ-----------------------------------DVFTWTAMVSGYVQNGMLDEART 228
           ++                                   D++  +A+V+G+ + G++D A+ 
Sbjct: 231 NEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKM 290

Query: 229 FFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP----------------------- 265
            F QM  +N ++ N ++ G  + ++ + A ++F+ M                        
Sbjct: 291 IFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNL 350

Query: 266 --------------------SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
                                  +S  N ++  YG+   I  A  +F +MP +D VSW +
Sbjct: 351 KEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNS 410

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           +ISG      +EEA++ F  +KR+G   +  +    LS+C+ +  L LG+QIHG+  K G
Sbjct: 411 MISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWG 470

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK-QALMVF 424
            +    V NALL +Y +  SI E   VF  + E D VSWN+ I   A++     QAL  F
Sbjct: 471 LDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYF 530

Query: 425 ESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGR 484
             M   G +P+ +T + +L+A S   ++  G +  +++   YSV   +     ++   G+
Sbjct: 531 LEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ-IHALILKYSVADDNAIENALLAFYGK 589

Query: 485 AGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
             ++E+ + +   M       SW +++     + ++ +  KA ++V+ M
Sbjct: 590 CEQMEDCEIIFSRMSERRDEVSWNSMISG---YLHSGILHKAMDLVWPM 635



 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 14/300 (4%)

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
           +L++   + +V   NT+I  Y + G++  ARKLFD MPQ++ VSW+ +ISGY Q    +E
Sbjct: 48  QLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDE 107

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAA--LELGKQIHGQVVKTGYETGCFVGNAL 376
           A ++F  +   G   N      AL  C    +  ++LG QIH  + K    +   + N L
Sbjct: 108 ACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVL 167

Query: 377 LGMYFKC-GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV--- 432
           + MY  C GSI +A+ VF+ I+ ++ V+WN++I+ Y R G    A  +F  M+  GV   
Sbjct: 168 MSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELN 227

Query: 433 -KPDEITMVG-VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY---TCMIDLLGRAGR 487
            +P+E T+   V +ACS   L D G      M      +   +     + +++   R G 
Sbjct: 228 LRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 284

Query: 488 LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNL 547
           ++ A+ + + M         G ++G +R H   E  +   EM   +E ++  + VLLS  
Sbjct: 285 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTF 344



 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 57/102 (55%)

Query: 349 AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMI 408
           ++L     +H Q+ KTG+    F  N L+ +Y + G++  A  +F+ + +K++VSW+ +I
Sbjct: 37  SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 96

Query: 409 AGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
           +GY ++    +A  +F+ + + G+ P+   +   L AC   G
Sbjct: 97  SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 138


>Medtr4g094402.5 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:37900455-37904049 | 20130731
          Length = 654

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 380/606 (62%), Gaps = 24/606 (3%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +R G   +A  +F++   R++V++N+MI+GY++    + AR LFD+MP RD+VSWN++++
Sbjct: 49  IRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLRDIVSWNLIIS 108

Query: 61  GYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           GY     +R + + R+LFD MPQ+D VSWN ++SGYA+NG  D+A E+F  MP +N +S 
Sbjct: 109 GYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSC 168

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF----DKMHV 173
           N ++  ++ NG ++ A   F    + +  S + L+ G V+   L  A ++     ++   
Sbjct: 169 NAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDE 228

Query: 174 RD--VVSWNTMISGYAQDGDMSQAKNLFD-------------QSPHQDVFTWTAMVSGYV 218
           +D  V ++NT+I+GY Q G + +A+++FD             +   ++V +W +M+  YV
Sbjct: 229 KDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYV 288

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + G +  AR  FD+M +++  S+N ++ GYVQ   M+ A +LF  MP  +V SWN++I+G
Sbjct: 289 KAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISG 348

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           + Q GD+ + ++ F+ MP ++ +SW ++I+GY +   Y+ A+ +F +++  GE  +R T 
Sbjct: 349 FSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTL 408

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE- 397
           S  LS    +  L LGKQIH  V KT       + N+L+ MY +CG IG+A  VF  ++ 
Sbjct: 409 SSILSVSTGLVDLYLGKQIHQFVTKT-VVPDLPINNSLITMYSRCGEIGDARHVFNEMKL 467

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDV++WN MI GYA HGF  QAL +FE MK + ++P  IT + VL+AC+HAGL++ G  
Sbjct: 468 YKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKR 527

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F SM  DY + P  +H+  ++D+LGR G+L+EA DL+ NMP +P  A WGALLGA R+H
Sbjct: 528 QFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVH 587

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
            N +L + AA+ + ++EP +S  Y LL NLYA  G+W DA  +R+ M +  V+K  GYSW
Sbjct: 588 SNVDLAQVAAKALIRLEPESSAPYALLFNLYADLGQWDDAERVRALMEENNVKKQAGYSW 647

Query: 578 VEVQNK 583
           ++  N+
Sbjct: 648 IDSTNR 653



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 51/226 (22%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N  I+   + G +  AR LFD    R+ V+W ++I+GY Q     +A  +F E+      
Sbjct: 42  NKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMP----- 96

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC-GS--IGEA 389
                         DI +                       N ++  YF C GS  + E 
Sbjct: 97  ------------LRDIVSW----------------------NLIISGYFSCRGSRFVEEG 122

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             +F+ + ++D VSWNT+I+GYA++G   QA+ +FESM    V    ++   V++     
Sbjct: 123 RKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNV----VSCNAVVNGFLLN 178

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           G +D    +F  M +  S + S      ++  L R G+L+ A +++
Sbjct: 179 GDVDSAVGFFRKMGERDSASLSG-----LVSGLVRNGKLDMAAEIL 219


>Medtr4g094402.4 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:37900455-37904049 | 20130731
          Length = 654

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 380/606 (62%), Gaps = 24/606 (3%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +R G   +A  +F++   R++V++N+MI+GY++    + AR LFD+MP RD+VSWN++++
Sbjct: 49  IRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLRDIVSWNLIIS 108

Query: 61  GYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           GY     +R + + R+LFD MPQ+D VSWN ++SGYA+NG  D+A E+F  MP +N +S 
Sbjct: 109 GYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSC 168

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF----DKMHV 173
           N ++  ++ NG ++ A   F    + +  S + L+ G V+   L  A ++     ++   
Sbjct: 169 NAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDE 228

Query: 174 RD--VVSWNTMISGYAQDGDMSQAKNLFD-------------QSPHQDVFTWTAMVSGYV 218
           +D  V ++NT+I+GY Q G + +A+++FD             +   ++V +W +M+  YV
Sbjct: 229 KDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYV 288

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + G +  AR  FD+M +++  S+N ++ GYVQ   M+ A +LF  MP  +V SWN++I+G
Sbjct: 289 KAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISG 348

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           + Q GD+ + ++ F+ MP ++ +SW ++I+GY +   Y+ A+ +F +++  GE  +R T 
Sbjct: 349 FSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTL 408

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE- 397
           S  LS    +  L LGKQIH  V KT       + N+L+ MY +CG IG+A  VF  ++ 
Sbjct: 409 SSILSVSTGLVDLYLGKQIHQFVTKT-VVPDLPINNSLITMYSRCGEIGDARHVFNEMKL 467

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDV++WN MI GYA HGF  QAL +FE MK + ++P  IT + VL+AC+HAGL++ G  
Sbjct: 468 YKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKR 527

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F SM  DY + P  +H+  ++D+LGR G+L+EA DL+ NMP +P  A WGALLGA R+H
Sbjct: 528 QFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVH 587

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
            N +L + AA+ + ++EP +S  Y LL NLYA  G+W DA  +R+ M +  V+K  GYSW
Sbjct: 588 SNVDLAQVAAKALIRLEPESSAPYALLFNLYADLGQWDDAERVRALMEENNVKKQAGYSW 647

Query: 578 VEVQNK 583
           ++  N+
Sbjct: 648 IDSTNR 653



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 51/226 (22%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N  I+   + G +  AR LFD    R+ V+W ++I+GY Q     +A  +F E+      
Sbjct: 42  NKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMP----- 96

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC-GS--IGEA 389
                         DI +                       N ++  YF C GS  + E 
Sbjct: 97  ------------LRDIVSW----------------------NLIISGYFSCRGSRFVEEG 122

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             +F+ + ++D VSWNT+I+GYA++G   QA+ +FESM    V    ++   V++     
Sbjct: 123 RKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNV----VSCNAVVNGFLLN 178

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           G +D    +F  M +  S + S      ++  L R G+L+ A +++
Sbjct: 179 GDVDSAVGFFRKMGERDSASLSG-----LVSGLVRNGKLDMAAEIL 219


>Medtr4g094402.3 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:37900455-37904066 | 20130731
          Length = 654

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 380/606 (62%), Gaps = 24/606 (3%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +R G   +A  +F++   R++V++N+MI+GY++    + AR LFD+MP RD+VSWN++++
Sbjct: 49  IRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLRDIVSWNLIIS 108

Query: 61  GYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           GY     +R + + R+LFD MPQ+D VSWN ++SGYA+NG  D+A E+F  MP +N +S 
Sbjct: 109 GYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSC 168

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF----DKMHV 173
           N ++  ++ NG ++ A   F    + +  S + L+ G V+   L  A ++     ++   
Sbjct: 169 NAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDE 228

Query: 174 RD--VVSWNTMISGYAQDGDMSQAKNLFD-------------QSPHQDVFTWTAMVSGYV 218
           +D  V ++NT+I+GY Q G + +A+++FD             +   ++V +W +M+  YV
Sbjct: 229 KDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYV 288

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + G +  AR  FD+M +++  S+N ++ GYVQ   M+ A +LF  MP  +V SWN++I+G
Sbjct: 289 KAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISG 348

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           + Q GD+ + ++ F+ MP ++ +SW ++I+GY +   Y+ A+ +F +++  GE  +R T 
Sbjct: 349 FSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTL 408

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE- 397
           S  LS    +  L LGKQIH  V KT       + N+L+ MY +CG IG+A  VF  ++ 
Sbjct: 409 SSILSVSTGLVDLYLGKQIHQFVTKT-VVPDLPINNSLITMYSRCGEIGDARHVFNEMKL 467

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDV++WN MI GYA HGF  QAL +FE MK + ++P  IT + VL+AC+HAGL++ G  
Sbjct: 468 YKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKR 527

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F SM  DY + P  +H+  ++D+LGR G+L+EA DL+ NMP +P  A WGALLGA R+H
Sbjct: 528 QFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVH 587

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
            N +L + AA+ + ++EP +S  Y LL NLYA  G+W DA  +R+ M +  V+K  GYSW
Sbjct: 588 SNVDLAQVAAKALIRLEPESSAPYALLFNLYADLGQWDDAERVRALMEENNVKKQAGYSW 647

Query: 578 VEVQNK 583
           ++  N+
Sbjct: 648 IDSTNR 653



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 51/226 (22%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N  I+   + G +  AR LFD    R+ V+W ++I+GY Q     +A  +F E+      
Sbjct: 42  NKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMP----- 96

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC-GS--IGEA 389
                         DI +                       N ++  YF C GS  + E 
Sbjct: 97  ------------LRDIVSW----------------------NLIISGYFSCRGSRFVEEG 122

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             +F+ + ++D VSWNT+I+GYA++G   QA+ +FESM    V    ++   V++     
Sbjct: 123 RKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNV----VSCNAVVNGFLLN 178

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           G +D    +F  M +  S + S      ++  L R G+L+ A +++
Sbjct: 179 GDVDSAVGFFRKMGERDSASLSG-----LVSGLVRNGKLDMAAEIL 219


>Medtr4g094402.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:37900455-37904049 | 20130731
          Length = 654

 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 380/606 (62%), Gaps = 24/606 (3%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +R G   +A  +F++   R++V++N+MI+GY++    + AR LFD+MP RD+VSWN++++
Sbjct: 49  IRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPLRDIVSWNLIIS 108

Query: 61  GYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           GY     +R + + R+LFD MPQ+D VSWN ++SGYA+NG  D+A E+F  MP +N +S 
Sbjct: 109 GYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSC 168

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF----DKMHV 173
           N ++  ++ NG ++ A   F    + +  S + L+ G V+   L  A ++     ++   
Sbjct: 169 NAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDE 228

Query: 174 RD--VVSWNTMISGYAQDGDMSQAKNLFD-------------QSPHQDVFTWTAMVSGYV 218
           +D  V ++NT+I+GY Q G + +A+++FD             +   ++V +W +M+  YV
Sbjct: 229 KDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYV 288

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + G +  AR  FD+M +++  S+N ++ GYVQ   M+ A +LF  MP  +V SWN++I+G
Sbjct: 289 KAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISG 348

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           + Q GD+ + ++ F+ MP ++ +SW ++I+GY +   Y+ A+ +F +++  GE  +R T 
Sbjct: 349 FSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTL 408

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE- 397
           S  LS    +  L LGKQIH  V KT       + N+L+ MY +CG IG+A  VF  ++ 
Sbjct: 409 SSILSVSTGLVDLYLGKQIHQFVTKT-VVPDLPINNSLITMYSRCGEIGDARHVFNEMKL 467

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDV++WN MI GYA HGF  QAL +FE MK + ++P  IT + VL+AC+HAGL++ G  
Sbjct: 468 YKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKR 527

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F SM  DY + P  +H+  ++D+LGR G+L+EA DL+ NMP +P  A WGALLGA R+H
Sbjct: 528 QFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVH 587

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
            N +L + AA+ + ++EP +S  Y LL NLYA  G+W DA  +R+ M +  V+K  GYSW
Sbjct: 588 SNVDLAQVAAKALIRLEPESSAPYALLFNLYADLGQWDDAERVRALMEENNVKKQAGYSW 647

Query: 578 VEVQNK 583
           ++  N+
Sbjct: 648 IDSTNR 653



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 51/226 (22%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N  I+   + G +  AR LFD    R+ V+W ++I+GY Q     +A  +F E+      
Sbjct: 42  NKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMP----- 96

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC-GS--IGEA 389
                         DI +                       N ++  YF C GS  + E 
Sbjct: 97  ------------LRDIVSW----------------------NLIISGYFSCRGSRFVEEG 122

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             +F+ + ++D VSWNT+I+GYA++G   QA+ +FESM    V    ++   V++     
Sbjct: 123 RKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNV----VSCNAVVNGFLLN 178

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           G +D    +F  M +  S + S      ++  L R G+L+ A +++
Sbjct: 179 GDVDSAVGFFRKMGERDSASLSG-----LVSGLVRNGKLDMAAEIL 219


>Medtr4g113830.1 | organelle transcript processing protein, putative
           | HC | chr4:46849211-46846995 | 20130731
          Length = 738

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/569 (42%), Positives = 345/569 (60%), Gaps = 41/569 (7%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
            ++I  YA  G+M  A+ +FD+S  +D  ++TA+++GYV  G LD+AR  FD++P K+ +
Sbjct: 170 TSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVV 229

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSRNV--------------------------SSW- 272
           S+NAM++GYVQS + + A   F  M   NV                           SW 
Sbjct: 230 SWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWV 289

Query: 273 ------------NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
                       N +I  Y + G+   AR+LFD + ++D +SW  +I GY+    YEEAL
Sbjct: 290 RDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGM 379
            +F  + R     N  TF   L  CA + AL+LGK +H  + K     +   +  +L+ M
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDM 409

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV-KPDEIT 438
           Y KCG I  A  VF  +  +++ SWN M++G+A HG  ++AL +F  M   G+ +PD+IT
Sbjct: 410 YAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDIT 469

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            VGVLSAC+ AGL+D G +YF SM +DY ++P  +HY CMIDLL RA + EEA+ LM+NM
Sbjct: 470 FVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNM 529

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
             EP  A WG+LL A + HG  E GE  AE +F++EP N+G +VLLSN+YA +GRW D  
Sbjct: 530 EMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVA 589

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R+R+ D G++KV G + +E+   +H+F VGD FHPE + IY  L E+D  +   G+V 
Sbjct: 590 RIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVP 649

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHIS 678
           +T  VL+D++EE KE  L  HSEKLA++FG++    G  IR++KNLRVC +CH+A K IS
Sbjct: 650 NTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLIS 709

Query: 679 KIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           KI  R II RD +RFHHF +G CSC D W
Sbjct: 710 KIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  203 bits (516), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 137/430 (31%), Positives = 214/430 (49%), Gaps = 50/430 (11%)

Query: 187 AQDGDMSQAKNLFD---QSPHQDVFTWTAMVSGYVQN----------------GMLDEAR 227
           +  GD+S A +LF+   Q    +VF W +++ GY  +                G+   + 
Sbjct: 73  SPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSH 132

Query: 228 TF---FDQMPQK--------------------NEISYNAMVAGYVQSNKMDMARELFEAM 264
           TF   F    +                     N   + +++  Y    +MD AR +F+  
Sbjct: 133 TFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKS 192

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
             R+  S+  +ITGY   G +  AR+LFD +P +D VSW A+ISGY Q+G +EEA+  F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           E++      N+ST    LS C    + ELGK I   V   G+ +   + NAL+ MY KCG
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCG 312

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
               A ++F+GIEEKDV+SWNTMI GY+     ++AL +FE M    VKP+++T +G+L 
Sbjct: 313 ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILH 372

Query: 445 ACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPA 504
           AC+  G +D G      ++K+   + ++  +T +ID+  + G +E A+ + R+M      
Sbjct: 373 ACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNL 431

Query: 505 ASWGALLGASRIHGNTELGEKA-AEMVFK--MEPHNSGMYVLLSNLYAASGRWADAGN-- 559
           ASW A+L    +HG+ E      +EMV K    P +     +LS    A     D G+  
Sbjct: 432 ASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG--LVDLGHQY 489

Query: 560 MRSRMRDVGV 569
            RS ++D G+
Sbjct: 490 FRSMIQDYGI 499



 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 23/352 (6%)

Query: 24  YNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
           + ++I  Y        AR +FDK   RD VS+  ++TGYV    L DARRLFD +P KDV
Sbjct: 169 HTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDV 228

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           VSWNAM+SGY Q+G  +EA   FY+M   N +     +   +       +  L      W
Sbjct: 229 VSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSW 288

Query: 144 --------ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
                    L   N L+  + K      AR+LFD +  +DV+SWNTMI GY+      +A
Sbjct: 289 VRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEA 348

Query: 196 KNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEAR---TFFDQ--MPQKNEISYNAMVA 246
             LF+     +V     T+  ++      G LD  +    + D+      N   + +++ 
Sbjct: 349 LALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLID 408

Query: 247 GYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-----DCV 301
            Y +   ++ A  +F +M SRN++SWN M++G+  +G   +A  LF  M  +     D +
Sbjct: 409 MYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDI 468

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRD-GESLNRSTFSCALSTCADIAALE 352
           ++  ++S   Q G  +     F  + +D G S     + C +   A     E
Sbjct: 469 TFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFE 520



 Score =  126 bits (317), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 190/451 (42%), Gaps = 97/451 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  D A  VF+    R +VS+ A+I+GY+       AR LFD++P +D+VSWN M++GYV
Sbjct: 180 GEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYV 239

Query: 64  RNRRLGDARRLFDSMPQKDVV--------------------------SW----------- 86
           ++ R  +A   F  M + +V+                          SW           
Sbjct: 240 QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQ 299

Query: 87  --NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD------ 138
             NA++  Y + G  D ARE+F  +  K+ ISWN ++  Y +    EEA  LF+      
Sbjct: 300 LTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN 359

Query: 139 -SKSDWELIS---------------------------------WNCLMGGFVKRKMLGAA 164
              +D   +                                  W  L+  + K   + AA
Sbjct: 360 VKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAA 419

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF-----TWTAMVSGYVQ 219
            ++F  MH R++ SWN M+SG+A  G   +A  LF +  ++ +F     T+  ++S   Q
Sbjct: 420 ERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQ 479

Query: 220 NGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWN 273
            G++D    +F  M Q   IS     Y  M+    ++ K + A  L + M    + + W 
Sbjct: 480 AGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWG 539

Query: 274 TMITGYGQNGDIA----QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           ++++    +G +      A +LF + P+ +  ++  + + YA  G +++     I  + +
Sbjct: 540 SLLSACKAHGRVEFGEYVAERLFQLEPE-NAGAFVLLSNIYAGAGRWDDVAR--IRTRLN 596

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQ 360
            + + +     ++    D+    +G + H +
Sbjct: 597 DKGMKKVPGCTSIEIDGDVHEFLVGDKFHPE 627


>Medtr3g105370.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:48574897-48577818 | 20130731
          Length = 973

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/812 (34%), Positives = 417/812 (51%), Gaps = 130/812 (16%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR--------------------- 64
           A+++ Y +  R   AR LFD+MP RD+V WNVM+  YV                      
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 65  ------------------NRRLGDAR----RLFDSMPQKDVVSWNAMLSGYAQNGYADEA 102
                              R L   R    +LF      DV  WN  LS Y Q G   EA
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEA 281

Query: 103 REVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS--KSDWE--LISWNCLMGG 154
            + F  M       +++++  +L+       +E   ++  +  +  W+  +   N  +  
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINM 341

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG----------DMSQAKNLFDQ--- 201
           +VK   +  AR++F +M   D++SWNT+ISG A+ G          D+ ++  L DQ   
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 202 ------------------SPHQ---------DVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
                               H          D F  TA++  Y + G ++EA   F    
Sbjct: 402 TSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNT--------------- 274
             +  S+NAM+ G+  S+    A  LF  M  R      ++  N                
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 275 ---------------MITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
                          +I+G    Y + G++  ARK+F+ +P  D V+W  +ISG  + G 
Sbjct: 522 IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGE 581

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
            E+AL  + +++  G   +  TF+  +  C+ + ALE GKQIH  ++K       FV  +
Sbjct: 582 EEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTS 641

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY KCG+I +A  +F  +  + V  WN MI G A+HG  ++AL  F  MK+ GV PD
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPD 701

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            +T +GVLSACSH+GL     + F SM K Y V P  +HY+C++D L RAG ++EA+ ++
Sbjct: 702 RVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVV 761

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
            +MPFE  A  +  LL A R+ G+ E GE+ AE +F M+P +S  YVLLSN+YAA+ +W 
Sbjct: 762 SSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWE 821

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +A + R+ M+ V V+K  G+SW++++NK+H F  GD  H E D IY  +E +  +++ EG
Sbjct: 822 NAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEG 881

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           YV  T+  L D+EEE+KE  L YHSEKLA+A+G++  P    +RVIKNLRVC DCHNAIK
Sbjct: 882 YVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIK 941

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +IS +  R I+LRD++RFHHF  GICSCGDYW
Sbjct: 942 YISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  169 bits (428), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 223/484 (46%), Gaps = 45/484 (9%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           N +++ YA+ G    AR++F   P   ++ +++N +LAAY H G + +  +  ++   + 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
           L+  + ++     R  L     LF    +    S +  + GYA    +            
Sbjct: 112 LLRQSVML---TTRHTLS---PLFKLCLLYGSPSASEALQGYAVKIGL-----------Q 154

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM 264
            DVF   A+V+ Y +   + EAR  FD+MP ++ + +N M+  YV+    D    LF A 
Sbjct: 155 WDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF 214

Query: 265 PSRNVS----SWNTMITGYGQNG----DIAQAR----KLFDMMPQRDCVSWAAIISGYAQ 312
               +     S  T++ G G+      ++ Q R    KLF      D   W   +S Y Q
Sbjct: 215 HRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQ 274

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
            G   EA++ F ++ +     +  T+   LS  A +  LELGKQIHG VV+ G++    V
Sbjct: 275 AGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSV 334

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N+ + MY K GS+  A  +F  ++E D++SWNT+I+G AR G  + +L +F  +   G+
Sbjct: 335 ANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGL 394

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
            PD+ T+  VL ACS            ++      +   S   T +ID+  + G++EEA+
Sbjct: 395 LPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAE 454

Query: 493 DLMRNMP-FEPPAASWGALLGASRIHGNT-----------ELGEKAAEMVFKMEPHNSGM 540
            L  N   F+   ASW A++    +  N            E GEKA ++ F      +G 
Sbjct: 455 LLFHNQDGFD--LASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGC 512

Query: 541 YVLL 544
            V L
Sbjct: 513 LVRL 516



 Score =  156 bits (394), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 235/537 (43%), Gaps = 45/537 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVMLTGYVRNRRLGDARR------LFD 76
           N +I+ Y +      AR LFD  PQ  RDLV++N +L  Y     L D  +      +F 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 77  SMPQKDVVSWNAMLSGYAQNGY---ADEAREVFYQMPHKNAISWN-----GLLAAYVHNG 128
            + Q  +++    LS   +      +  A E       K  + W+      L+  Y    
Sbjct: 112 LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQ 171

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----DVVSWNTMIS 184
           RI EA  LFD     +++ WN +M  +V+         LF   H      D VS  T++ 
Sbjct: 172 RIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILM 231

Query: 185 GYAQ----DGDMSQ----AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
           G  +    + ++ Q    A  LF      DV  W   +S Y+Q G   EA   F  M + 
Sbjct: 232 GVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKS 291

Query: 237 ----NEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQA 288
               + ++Y  +++     N +++ +++  A+      + VS  N+ I  Y + G +  A
Sbjct: 292 RVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYA 351

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           R++F  M + D +SW  +ISG A++G  E +L +FI++ R G   ++ T +  L  C+ +
Sbjct: 352 RRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 349 -AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
             +  +G+Q+H   +K G     FV  AL+ +Y K G + EA  +F   +  D+ SWN M
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE---YFYSMNK 464
           + G+      ++AL +F  M   G K D+IT      A      + +G +       M  
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
            Y +   S     ++D+  + G ++ A+ +   +P  P   +W  ++     +G  E
Sbjct: 532 HYDLFVISG----ILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 56/378 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+ I+ Y++    + AR +F +M + DL+SWN +++G  R+     + RLF  + +  ++
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL 395

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISW---------NGLLAAYVHNGRIEEACR 135
                ++   +   + E      +  H  A+             L+  Y   G++EEA  
Sbjct: 396 PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--------------------- 174
           LF ++  ++L SWN +M GF        A +LF  MH R                     
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 175 ------------------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                             D+   + ++  Y + G+M  A+ +F+Q P  D   WT ++SG
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 217 YVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS-- 270
            V+NG  ++A   + QM     Q +E ++  +V        ++  +++   +   N +  
Sbjct: 576 CVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD 635

Query: 271 --SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
                +++  Y + G+I  A  LF  M  R    W A+I G AQ G+ EEALN F E+K 
Sbjct: 636 PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 329 DGESLNRSTFSCALSTCA 346
            G + +R TF   LS C+
Sbjct: 696 RGVTPDRVTFIGVLSACS 713


>Medtr3g105370.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:48574897-48577818 | 20130731
          Length = 973

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/812 (34%), Positives = 417/812 (51%), Gaps = 130/812 (16%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR--------------------- 64
           A+++ Y +  R   AR LFD+MP RD+V WNVM+  YV                      
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 65  ------------------NRRLGDAR----RLFDSMPQKDVVSWNAMLSGYAQNGYADEA 102
                              R L   R    +LF      DV  WN  LS Y Q G   EA
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEA 281

Query: 103 REVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS--KSDWE--LISWNCLMGG 154
            + F  M       +++++  +L+       +E   ++  +  +  W+  +   N  +  
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINM 341

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG----------DMSQAKNLFDQ--- 201
           +VK   +  AR++F +M   D++SWNT+ISG A+ G          D+ ++  L DQ   
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 202 ------------------SPHQ---------DVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
                               H          D F  TA++  Y + G ++EA   F    
Sbjct: 402 TSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNT--------------- 274
             +  S+NAM+ G+  S+    A  LF  M  R      ++  N                
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 275 ---------------MITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
                          +I+G    Y + G++  ARK+F+ +P  D V+W  +ISG  + G 
Sbjct: 522 IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGE 581

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
            E+AL  + +++  G   +  TF+  +  C+ + ALE GKQIH  ++K       FV  +
Sbjct: 582 EEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTS 641

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY KCG+I +A  +F  +  + V  WN MI G A+HG  ++AL  F  MK+ GV PD
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPD 701

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            +T +GVLSACSH+GL     + F SM K Y V P  +HY+C++D L RAG ++EA+ ++
Sbjct: 702 RVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVV 761

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
            +MPFE  A  +  LL A R+ G+ E GE+ AE +F M+P +S  YVLLSN+YAA+ +W 
Sbjct: 762 SSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWE 821

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +A + R+ M+ V V+K  G+SW++++NK+H F  GD  H E D IY  +E +  +++ EG
Sbjct: 822 NAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEG 881

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           YV  T+  L D+EEE+KE  L YHSEKLA+A+G++  P    +RVIKNLRVC DCHNAIK
Sbjct: 882 YVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIK 941

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +IS +  R I+LRD++RFHHF  GICSCGDYW
Sbjct: 942 YISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  169 bits (428), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 223/484 (46%), Gaps = 45/484 (9%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           N +++ YA+ G    AR++F   P   ++ +++N +LAAY H G + +  +  ++   + 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
           L+  + ++     R  L     LF    +    S +  + GYA    +            
Sbjct: 112 LLRQSVML---TTRHTLS---PLFKLCLLYGSPSASEALQGYAVKIGL-----------Q 154

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM 264
            DVF   A+V+ Y +   + EAR  FD+MP ++ + +N M+  YV+    D    LF A 
Sbjct: 155 WDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF 214

Query: 265 PSRNVS----SWNTMITGYGQNG----DIAQAR----KLFDMMPQRDCVSWAAIISGYAQ 312
               +     S  T++ G G+      ++ Q R    KLF      D   W   +S Y Q
Sbjct: 215 HRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQ 274

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
            G   EA++ F ++ +     +  T+   LS  A +  LELGKQIHG VV+ G++    V
Sbjct: 275 AGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSV 334

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N+ + MY K GS+  A  +F  ++E D++SWNT+I+G AR G  + +L +F  +   G+
Sbjct: 335 ANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGL 394

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
            PD+ T+  VL ACS            ++      +   S   T +ID+  + G++EEA+
Sbjct: 395 LPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAE 454

Query: 493 DLMRNMP-FEPPAASWGALLGASRIHGNT-----------ELGEKAAEMVFKMEPHNSGM 540
            L  N   F+   ASW A++    +  N            E GEKA ++ F      +G 
Sbjct: 455 LLFHNQDGFD--LASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGC 512

Query: 541 YVLL 544
            V L
Sbjct: 513 LVRL 516



 Score =  156 bits (394), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 235/537 (43%), Gaps = 45/537 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVMLTGYVRNRRLGDARR------LFD 76
           N +I+ Y +      AR LFD  PQ  RDLV++N +L  Y     L D  +      +F 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 77  SMPQKDVVSWNAMLSGYAQNGY---ADEAREVFYQMPHKNAISWN-----GLLAAYVHNG 128
            + Q  +++    LS   +      +  A E       K  + W+      L+  Y    
Sbjct: 112 LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQ 171

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----DVVSWNTMIS 184
           RI EA  LFD     +++ WN +M  +V+         LF   H      D VS  T++ 
Sbjct: 172 RIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILM 231

Query: 185 GYAQ----DGDMSQ----AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
           G  +    + ++ Q    A  LF      DV  W   +S Y+Q G   EA   F  M + 
Sbjct: 232 GVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKS 291

Query: 237 ----NEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQA 288
               + ++Y  +++     N +++ +++  A+      + VS  N+ I  Y + G +  A
Sbjct: 292 RVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYA 351

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           R++F  M + D +SW  +ISG A++G  E +L +FI++ R G   ++ T +  L  C+ +
Sbjct: 352 RRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 349 -AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
             +  +G+Q+H   +K G     FV  AL+ +Y K G + EA  +F   +  D+ SWN M
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE---YFYSMNK 464
           + G+      ++AL +F  M   G K D+IT      A      + +G +       M  
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
            Y +   S     ++D+  + G ++ A+ +   +P  P   +W  ++     +G  E
Sbjct: 532 HYDLFVISG----ILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 56/378 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+ I+ Y++    + AR +F +M + DL+SWN +++G  R+     + RLF  + +  ++
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL 395

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISW---------NGLLAAYVHNGRIEEACR 135
                ++   +   + E      +  H  A+             L+  Y   G++EEA  
Sbjct: 396 PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--------------------- 174
           LF ++  ++L SWN +M GF        A +LF  MH R                     
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 175 ------------------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                             D+   + ++  Y + G+M  A+ +F+Q P  D   WT ++SG
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 217 YVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS-- 270
            V+NG  ++A   + QM     Q +E ++  +V        ++  +++   +   N +  
Sbjct: 576 CVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD 635

Query: 271 --SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
                +++  Y + G+I  A  LF  M  R    W A+I G AQ G+ EEALN F E+K 
Sbjct: 636 PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 329 DGESLNRSTFSCALSTCA 346
            G + +R TF   LS C+
Sbjct: 696 RGVTPDRVTFIGVLSACS 713


>Medtr3g105370.3 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:48574897-48578894 | 20130731
          Length = 993

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 282/812 (34%), Positives = 417/812 (51%), Gaps = 130/812 (16%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR--------------------- 64
           A+++ Y +  R   AR LFD+MP RD+V WNVM+  YV                      
Sbjct: 162 ALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRP 221

Query: 65  ------------------NRRLGDAR----RLFDSMPQKDVVSWNAMLSGYAQNGYADEA 102
                              R L   R    +LF      DV  WN  LS Y Q G   EA
Sbjct: 222 DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEA 281

Query: 103 REVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS--KSDWE--LISWNCLMGG 154
            + F  M       +++++  +L+       +E   ++  +  +  W+  +   N  +  
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINM 341

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG----------DMSQAKNLFDQ--- 201
           +VK   +  AR++F +M   D++SWNT+ISG A+ G          D+ ++  L DQ   
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 202 ------------------SPHQ---------DVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
                               H          D F  TA++  Y + G ++EA   F    
Sbjct: 402 TSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQD 461

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNT--------------- 274
             +  S+NAM+ G+  S+    A  LF  M  R      ++  N                
Sbjct: 462 GFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQ 521

Query: 275 ---------------MITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
                          +I+G    Y + G++  ARK+F+ +P  D V+W  +ISG  + G 
Sbjct: 522 IHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGE 581

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
            E+AL  + +++  G   +  TF+  +  C+ + ALE GKQIH  ++K       FV  +
Sbjct: 582 EEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTS 641

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY KCG+I +A  +F  +  + V  WN MI G A+HG  ++AL  F  MK+ GV PD
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPD 701

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            +T +GVLSACSH+GL     + F SM K Y V P  +HY+C++D L RAG ++EA+ ++
Sbjct: 702 RVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVV 761

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
            +MPFE  A  +  LL A R+ G+ E GE+ AE +F M+P +S  YVLLSN+YAA+ +W 
Sbjct: 762 SSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWE 821

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +A + R+ M+ V V+K  G+SW++++NK+H F  GD  H E D IY  +E +  +++ EG
Sbjct: 822 NAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEG 881

Query: 616 YVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIK 675
           YV  T+  L D+EEE+KE  L YHSEKLA+A+G++  P    +RVIKNLRVC DCHNAIK
Sbjct: 882 YVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIK 941

Query: 676 HISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +IS +  R I+LRD++RFHHF  GICSCGDYW
Sbjct: 942 YISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 223/484 (46%), Gaps = 45/484 (9%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           N +++ YA+ G    AR++F   P   ++ +++N +LAAY H G + +  +  ++   + 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
           L+  + ++     R  L     LF    +    S +  + GYA    +            
Sbjct: 112 LLRQSVML---TTRHTLS---PLFKLCLLYGSPSASEALQGYAVKIGL-----------Q 154

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM 264
            DVF   A+V+ Y +   + EAR  FD+MP ++ + +N M+  YV+    D    LF A 
Sbjct: 155 WDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAF 214

Query: 265 PSRNVS----SWNTMITGYGQNG----DIAQAR----KLFDMMPQRDCVSWAAIISGYAQ 312
               +     S  T++ G G+      ++ Q R    KLF      D   W   +S Y Q
Sbjct: 215 HRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQ 274

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
            G   EA++ F ++ +     +  T+   LS  A +  LELGKQIHG VV+ G++    V
Sbjct: 275 AGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSV 334

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N+ + MY K GS+  A  +F  ++E D++SWNT+I+G AR G  + +L +F  +   G+
Sbjct: 335 ANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGL 394

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
            PD+ T+  VL ACS            ++      +   S   T +ID+  + G++EEA+
Sbjct: 395 LPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAE 454

Query: 493 DLMRNMP-FEPPAASWGALLGASRIHGNT-----------ELGEKAAEMVFKMEPHNSGM 540
            L  N   F+   ASW A++    +  N            E GEKA ++ F      +G 
Sbjct: 455 LLFHNQDGFD--LASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGC 512

Query: 541 YVLL 544
            V L
Sbjct: 513 LVRL 516



 Score =  156 bits (394), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 235/537 (43%), Gaps = 45/537 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVMLTGYVRNRRLGDARR------LFD 76
           N +I+ Y +      AR LFD  PQ  RDLV++N +L  Y     L D  +      +F 
Sbjct: 52  NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFR 111

Query: 77  SMPQKDVVSWNAMLSGYAQNGY---ADEAREVFYQMPHKNAISWN-----GLLAAYVHNG 128
            + Q  +++    LS   +      +  A E       K  + W+      L+  Y    
Sbjct: 112 LLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQ 171

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----DVVSWNTMIS 184
           RI EA  LFD     +++ WN +M  +V+         LF   H      D VS  T++ 
Sbjct: 172 RIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILM 231

Query: 185 GYAQ----DGDMSQ----AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
           G  +    + ++ Q    A  LF      DV  W   +S Y+Q G   EA   F  M + 
Sbjct: 232 GVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKS 291

Query: 237 ----NEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQA 288
               + ++Y  +++     N +++ +++  A+      + VS  N+ I  Y + G +  A
Sbjct: 292 RVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYA 351

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           R++F  M + D +SW  +ISG A++G  E +L +FI++ R G   ++ T +  L  C+ +
Sbjct: 352 RRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSL 411

Query: 349 -AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
             +  +G+Q+H   +K G     FV  AL+ +Y K G + EA  +F   +  D+ SWN M
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE---YFYSMNK 464
           + G+      ++AL +F  M   G K D+IT      A      + +G +       M  
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
            Y +   S     ++D+  + G ++ A+ +   +P  P   +W  ++     +G  E
Sbjct: 532 HYDLFVISG----ILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEE 583



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 56/378 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+ I+ Y++    + AR +F +M + DL+SWN +++G  R+     + RLF  + +  ++
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL 395

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISW---------NGLLAAYVHNGRIEEACR 135
                ++   +   + E      +  H  A+             L+  Y   G++EEA  
Sbjct: 396 PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--------------------- 174
           LF ++  ++L SWN +M GF        A +LF  MH R                     
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 175 ------------------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                             D+   + ++  Y + G+M  A+ +F+Q P  D   WT ++SG
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 217 YVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS-- 270
            V+NG  ++A   + QM     Q +E ++  +V        ++  +++   +   N +  
Sbjct: 576 CVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD 635

Query: 271 --SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
                +++  Y + G+I  A  LF  M  R    W A+I G AQ G+ EEALN F E+K 
Sbjct: 636 PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 329 DGESLNRSTFSCALSTCA 346
            G + +R TF   LS C+
Sbjct: 696 RGVTPDRVTFIGVLSACS 713


>Medtr1g037590.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:13924435-13921068 | 20130731
          Length = 598

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 232/592 (39%), Positives = 367/592 (61%), Gaps = 11/592 (1%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-PHKNA 114
           N  ++   R  ++ +AR++FD M ++D   W  M+SGY + G  +EAR++F ++   K+ 
Sbjct: 5   NYFISKLCREGQINEARKVFDEMSERDSCLWTTMISGYIKCGLINEARKLFDRLDAEKSV 64

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           I W  +++ Y+   RIEEA RLF+      ++SWN ++ G+ +      A  LF +M  R
Sbjct: 65  IVWTAMVSGYIKINRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEAMDLFGRMPER 124

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           +VVSWNT+++  A  G +  A+ LF++   +DV +WT MV+G  +NG +D+AR  FD+MP
Sbjct: 125 NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDDARDVFDRMP 184

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
            +N +S+NAM+AGY Q+ + D A +LFE MP R++ SWNTM+TG+ QNGD+ +A KLF  
Sbjct: 185 IRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEKLFHA 244

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK-RDGESLNRSTFSCALSTCADIAALEL 353
           MP+++ ++W A+++GY Q G  EEAL +F +++  DG      TF   L  C+D+A L  
Sbjct: 245 MPKKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPE 304

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE-GIE-EKDVVSWNTMIAGY 411
           G+QIH  + KT ++   +V +AL+ MY KCG    A  +F+ G+    D+++WN MIA Y
Sbjct: 305 GQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAY 364

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
           A HG+G +A+++F  M+ +G + +++T VG+L+ACSHAGL D G +YF  + K+  +   
Sbjct: 365 AHHGYGNEAIILFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYMQVR 424

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVF 531
             HYTC+IDL GRAGRL+EA +++  +  E   + WGALL    +HGN ++G   A+ V 
Sbjct: 425 EDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSVWGALLAGCSVHGNADIGRLVADKVL 484

Query: 532 KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGD 591
           KMEP N+  Y+L SN+YA+ G   +A N+R +M+D G++K  G SW++V N +  F V D
Sbjct: 485 KMEPENADTYLLASNMYASVGMREEAANVRMKMKDKGLKKQPGCSWIDVGNTVQVFVVND 544

Query: 592 CFHPEKDRIYAFLEEL-------DLKMRREGYVSSTKLVLHDVEEEEKEHML 636
             H + + +   L +        D K + E       LV+  + +  K+HM+
Sbjct: 545 KSHSQFEMLKISLWKAKVVAKWPDYKQKIEDASMQHNLVMSILFQGLKQHMV 596



 Score =  275 bits (704), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 153/479 (31%), Positives = 260/479 (54%), Gaps = 47/479 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-PQRDLVSWNVMLT 60
           R G  + A +VF+ M  R S  +  MISGY++    + AR LFD++  ++ ++ W  M++
Sbjct: 13  REGQINEARKVFDEMSERDSCLWTTMISGYIKCGLINEARKLFDRLDAEKSVIVWTAMVS 72

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GY++  R+ +A RLF+ MP ++VVSWN M+ GYA+NG   EA ++F +MP +N +SWN +
Sbjct: 73  GYIKINRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEAMDLFGRMPERNVVSWNTV 132

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           + A  H GRI++A RLF+   + +++SW  ++ G  K   +  AR +FD+M +R+VVSWN
Sbjct: 133 MTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDDARDVFDRMPIRNVVSWN 192

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
            MI+GYAQ+G   +A  LF++ P +D+ +W  MV+G++QNG L+ A   F  MP+KN I+
Sbjct: 193 AMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEKLFHAMPKKNVIT 252

Query: 241 YNAMVAGYVQSNKMDMARELFEAMP----------------------------------- 265
           + AM+ GYVQ    + A +LF  M                                    
Sbjct: 253 WTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMI 312

Query: 266 SRNVSSWNT-----MITGYGQNGDIAQARKLFD--MMPQRDCVSWAAIISGYAQTGHYEE 318
           S+ V   +T     +I  Y + GD   A+K+FD  +    D ++W  +I+ YA  G+  E
Sbjct: 313 SKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNE 372

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-ETGCFVGNALL 377
           A+ +F +++  G   N  T+   L+ C+     + G +   +++K  Y +        L+
Sbjct: 373 AIILFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYMQVREDHYTCLI 432

Query: 378 GMYFKCGSIGEANDVFEGI-EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
            +  + G + EA ++ EG+ +E  +  W  ++AG + HG      +V +  K + ++P+
Sbjct: 433 DLCGRAGRLDEALNIIEGLGKEVSLSVWGALLAGCSVHGNADIGRLVAD--KVLKMEPE 489



 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 46/184 (25%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD--------- 51
           ++NG  + A ++F+ MP+++ +++ AM++GY+++     A  LF+KM   D         
Sbjct: 230 IQNGDLNRAEKLFHAMPKKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTF 289

Query: 52  ---------------------LVSWNVML-TGYVRN------RRLGD---ARRLFDS--M 78
                                ++S  V   + YV +       + GD   A+++FD    
Sbjct: 290 VTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLS 349

Query: 79  PQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEAC 134
              D+++WN M++ YA +GY +EA  +F +M       N +++ GLL A  H G  +E  
Sbjct: 350 GHMDLIAWNGMIAAYAHHGYGNEAIILFNKMQELGFQANDVTYVGLLTACSHAGLFDEGF 409

Query: 135 RLFD 138
           + FD
Sbjct: 410 KYFD 413


>Medtr3g011950.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:3128021-3130773 | 20130731
          Length = 810

 Score =  463 bits (1191), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/734 (36%), Positives = 416/734 (56%), Gaps = 36/734 (4%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLV-------SWN 56
           G  + ALRVF+++  +  V Y+ ++ GY++N+  S +   F +M Q D V       ++ 
Sbjct: 83  GTINEALRVFDSVETKLDVLYHTLLKGYVKNSSLSESLSFFKRM-QNDEVEPVVYDFTYL 141

Query: 57  VMLTGYVRNRRLGDARR--LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           + L G   + + G      L  +  + ++ +  ++++ YA+    D+A ++F +MP ++ 
Sbjct: 142 LQLCGENFDLKKGMEVHGMLIKNGFESNLFAMTSVVNLYAKCRKIDDAYKMFVRMPERDL 201

Query: 115 ISWNGLLAAYVHNGRIEEACRL-FDSKSDWE----------LISWNCLMGGFVKRKMLGA 163
           + WN ++A Y  NG   +A +L  D + D +          L +   + G  + R + G 
Sbjct: 202 VCWNTVVAGYAQNGFARKALKLVLDMQEDGKKADSITLVSVLPAVADVKGLRIGRSVHGY 261

Query: 164 ARKL-FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
           A +L FD M    V     ++  Y + G++   + +F +   ++V +W  ++ G  QNG 
Sbjct: 262 AVRLGFDSM----VNVSTALLDMYFKCGEVETGRLVFQRMSSKNVVSWNTVIDGLAQNGE 317

Query: 223 LDEA-RTFFDQMPQKNEISYNAMV-AGYVQSNKMDMAR-----ELFEAMP-SRNVSSWNT 274
            +EA  TF     +K E +  +M+ A +  SN  D+ R      L + M  S NVS  N+
Sbjct: 318 SEEAFATFLKMFEEKVEPTNVSMMGALHACSNLGDLERGKFVHRLLDQMKLSSNVSVMNS 377

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           +I+ Y +   +  A  +FD +  +  V+W A+I GYAQ G   EALN+F  ++  G   +
Sbjct: 378 LISMYSKCKRVDIAASVFDNLEGKTNVTWNAMILGYAQNGCVNEALNLFCTMQSQGIKPD 437

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
             TF   ++  AD++     K IHG  ++T  +T  FV  AL+ MY KCG+I  A ++F+
Sbjct: 438 SFTFVSVITALADLSVTRQAKWIHGLAIRTNMDTNVFVATALVDMYAKCGAIETARELFD 497

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGLID 453
            ++E+ V++WN MI GY  HG GK AL +F+ M+    +KP++IT + V+SACSH+G ++
Sbjct: 498 MMQERHVITWNAMIDGYGTHGLGKAALDLFDDMQNEASLKPNDITFLSVISACSHSGFVE 557

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            G  YF  M + Y + PS  HY  M+DLLGRAG+L++A   +  MP +P     GA+LGA
Sbjct: 558 EGLYYFKIMKEGYGLEPSMDHYGAMVDLLGRAGKLDDAWKFIHEMPIKPGITVLGAMLGA 617

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            +IH N ELGEKAA+ +F+++P   G Y+L++N+YA++  W     +R+ M   G+ K  
Sbjct: 618 CKIHKNIELGEKAADRLFELDPDEGGYYMLVANMYASASMWDKVAKVRTAMEKKGLHKTP 677

Query: 574 GYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKE 633
           G S VE +N++H F  G   HP+  RIYAFLE L  ++R  GYV     + HDVEE  KE
Sbjct: 678 GCSLVEWRNEVHAFYSGSTNHPQSKRIYAFLETLGDEIRAAGYVPDNDSI-HDVEEYVKE 736

Query: 634 HMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRF 693
            ++  HSE+LA+AFG+L    G  I V KNLRVC DCH A K+IS + GR II+RD  RF
Sbjct: 737 QLVSSHSERLAIAFGLLNTRPGTTIHVRKNLRVCGDCHEATKYISLVTGREIIVRDLQRF 796

Query: 694 HHFNEGICSCGDYW 707
           HHF  G CSCGDYW
Sbjct: 797 HHFKNGRCSCGDYW 810



 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 218/462 (47%), Gaps = 52/462 (11%)

Query: 120 LLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH---VRDV 176
           L++ +   G I EA R+FDS      + ++ L+ G+VK   L  +   F +M    V  V
Sbjct: 75  LISLFCKFGTINEALRVFDSVETKLDVLYHTLLKGYVKNSSLSESLSFFKRMQNDEVEPV 134

Query: 177 V-SWNTMISGYAQDGDMSQAKN----LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
           V  +  ++    ++ D+ +       L       ++F  T++V+ Y +   +D+A   F 
Sbjct: 135 VYDFTYLLQLCGENFDLKKGMEVHGMLIKNGFESNLFAMTSVVNLYAKCRKIDDAYKMFV 194

Query: 232 QMPQKNEISYNAMVAGYVQSN--------KMDMARE--------LFEAMPS--------- 266
           +MP+++ + +N +VAGY Q+          +DM  +        L   +P+         
Sbjct: 195 RMPERDLVCWNTVVAGYAQNGFARKALKLVLDMQEDGKKADSITLVSVLPAVADVKGLRI 254

Query: 267 -RNVSSW-------------NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
            R+V  +               ++  Y + G++   R +F  M  ++ VSW  +I G AQ
Sbjct: 255 GRSVHGYAVRLGFDSMVNVSTALLDMYFKCGEVETGRLVFQRMSSKNVVSWNTVIDGLAQ 314

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
            G  EEA   F+++  +       +   AL  C+++  LE GK +H  + +    +   V
Sbjct: 315 NGESEEAFATFLKMFEEKVEPTNVSMMGALHACSNLGDLERGKFVHRLLDQMKLSSNVSV 374

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N+L+ MY KC  +  A  VF+ +E K  V+WN MI GYA++G   +AL +F +M++ G+
Sbjct: 375 MNSLISMYSKCKRVDIAASVFDNLEGKTNVTWNAMILGYAQNGCVNEALNLFCTMQSQGI 434

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           KPD  T V V++A +    + R  ++ + +    ++  +    T ++D+  + G +E A+
Sbjct: 435 KPDSFTFVSVITALADLS-VTRQAKWIHGLAIRTNMDTNVFVATALVDMYAKCGAIETAR 493

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
           +L  +M  E    +W A++     HG   LG+ A ++   M+
Sbjct: 494 ELF-DMMQERHVITWNAMIDGYGTHG---LGKAALDLFDDMQ 531


>Medtr1g038860.1 | PPR containing plant-like protein | LC |
           chr1:14313044-14316621 | 20130731
          Length = 625

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/577 (40%), Positives = 363/577 (62%), Gaps = 5/577 (0%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-PHKNA 114
           N  ++   R  ++ +AR++FD M ++D   W  M+SGY + G  +EAR++F +    K+ 
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           I W  +++ Y+   RIEEA RLF+      ++SWN ++ G+ +      A  LF +M  R
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           +VVSWNT+++  A  G +  A+ LF++   +DV +WT MV+G  +NG +D AR  FD+MP
Sbjct: 169 NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMP 228

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
            +N +S+NAM+AGY Q+ + D A +LFE MP R++ SWNTM+TG+ QNGD+ +A +LF  
Sbjct: 229 IRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHA 288

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK-RDGESLNRSTFSCALSTCADIAALEL 353
           MPQ++ ++W A+++GY Q G  EEAL +F +++  DG      TF   L  C+D+A L  
Sbjct: 289 MPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPE 348

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE-GIE-EKDVVSWNTMIAGY 411
           G+QIH  + KT ++   +V +AL+ MY KCG    A  +F+ G+    D+++WN MIA Y
Sbjct: 349 GQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAY 408

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
           A HG+G +A+ +F  M+ +G + +++T VG+L+ACSHAGL D G +YF  + K+  +   
Sbjct: 409 AHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVR 468

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVF 531
             HYTC+IDL GRAGRL+EA +++  +  E   + WGALL    +HGN ++G+  A+ V 
Sbjct: 469 EDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKVL 528

Query: 532 KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGD 591
           KMEP N+  Y+L SN+YA+ G   +A N+R +M+  G++K  G SW++V N +  F V D
Sbjct: 529 KMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVND 588

Query: 592 CFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVE 628
             H + + +   L +L  KM++   +S   L++ DVE
Sbjct: 589 KSHSQFEMLKYLLLDLHTKMKKNRDMSDDDLLV-DVE 624



 Score =  284 bits (727), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 263/479 (54%), Gaps = 47/479 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-PQRDLVSWNVMLT 60
           R G  + A +VF+ M +R S  +  MISGY++    + AR LFD+   Q+ ++ W  M++
Sbjct: 57  REGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSVIVWTAMVS 116

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GY++  R+ +A RLF+ MP ++VVSWN M+ GYA+NG   EA ++F +MP +N +SWN +
Sbjct: 117 GYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTV 176

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           + A  H GRI++A RLF+   + +++SW  ++ G  K   + AAR++FDKM +R+VVSWN
Sbjct: 177 MTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWN 236

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
            MI+GYAQ+G   +A  LF++ P +D+ +W  MV+G++QNG L+ A   F  MPQKN I+
Sbjct: 237 AMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVIT 296

Query: 241 YNAMVAGYVQSNKMDMARELFEAMP----------------------------------- 265
           + AM+ GYVQ    + A +LF  M                                    
Sbjct: 297 WTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMI 356

Query: 266 SRNVSSWNT-----MITGYGQNGDIAQARKLFD--MMPQRDCVSWAAIISGYAQTGHYEE 318
           S+ V   +T     +I  Y + GD   A+K+FD  +    D ++W  +I+ YA  G+  E
Sbjct: 357 SKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNE 416

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-ETGCFVGNALL 377
           A+N+F +++  G   N  T+   L+ C+     + G +   +++K  Y +        L+
Sbjct: 417 AINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLI 476

Query: 378 GMYFKCGSIGEANDVFEGI-EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
            +  + G + EA ++ EG+ +E  +  W  ++AG + HG      +V +  K + ++P+
Sbjct: 477 DLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVAD--KVLKMEPE 533



 Score =  192 bits (488), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 201/426 (47%), Gaps = 79/426 (18%)

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP 203
           E+   N  +    +   +  ARK+FD+M  RD   W TMISGY + G +++A+ LFD+  
Sbjct: 44  EMKRCNYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPD 103

Query: 204 HQ-DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
            Q  V  WTAMVSGY++   ++EA   F++MP +N +S+N M+ GY ++ +   A +LF 
Sbjct: 104 AQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFG 163

Query: 263 AMPSRNVSSWN-------------------------------TMITGYGQNGDIAQARKL 291
            MP RNV SWN                               TM+ G  +NG +  AR++
Sbjct: 164 RMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREV 223

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI-KRDGESLNRSTFSCALSTCADIAA 350
           FD MP R+ VSW A+I+GYAQ G ++EAL +F  + +RD  S N                
Sbjct: 224 FDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWN---------------- 267

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
                      + TG     F+ N         G +  A  +F  + +K+V++W  M+ G
Sbjct: 268 ----------TMVTG-----FIQN---------GDLNRAEQLFHAMPQKNVITWTAMMTG 303

Query: 411 YARHGFGKQALMVFESMK-TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           Y +HG  ++AL +F  M+   G+KP   T V VL ACS    +  G +  + M       
Sbjct: 304 YVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQ-IHQMISKTVFQ 362

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRN-MPFEPPAASWGALLGASRIHGNTELGEKAAE 528
            S+   + +I++  + G    A+ +  + +       +W  ++ A   HG    G +A  
Sbjct: 363 ESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHG---YGNEAIN 419

Query: 529 MVFKME 534
           +  KM+
Sbjct: 420 LFNKMQ 425



 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 123/281 (43%), Gaps = 55/281 (19%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD--------- 51
           ++NG  + A ++F+ MP+++ +++ AM++GY+++     A  LF+KM   D         
Sbjct: 274 IQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTF 333

Query: 52  ---------------------LVSWNVML-TGYVRN------RRLGD---ARRLFDS--M 78
                                ++S  V   + YV +       + GD   A+++FD    
Sbjct: 334 VTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLS 393

Query: 79  PQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEAC 134
              D+++WN M++ YA +GY +EA  +F +M       N +++ GLL A  H G  +E  
Sbjct: 394 GHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGF 453

Query: 135 RLFDSKSDWELIS-----WNCLMGGFVKRKMLGAARKLFDKMHVRDVVS-WNTMISGYAQ 188
           + FD       I      + CL+    +   L  A  + + +     +S W  +++G + 
Sbjct: 454 KYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSV 513

Query: 189 DGDMSQAKNLFDQS---PHQDVFTWTAMVSGYVQNGMLDEA 226
            G+    K + D+      ++  T+    + Y   GM +EA
Sbjct: 514 HGNADIGKLVADKVLKMEPENADTYLLASNMYASVGMREEA 554


>Medtr4g085110.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:33294066-33291364 | 20130731
          Length = 814

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 394/734 (53%), Gaps = 35/734 (4%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  + A +VF+  P R ++  NAM+ G+L+N  +     LF  M  RD     + L  Y 
Sbjct: 86  GFLNYAYKVFDQCPHRETILCNAMMGGFLKNMEYKEVPKLFKMMGLRD-----IELNSYT 140

Query: 64  RNRRLGDARRLFDSMPQKDVVSW-------------NAMLSGYAQNGYADEAREVFYQMP 110
               L     L D     ++V               ++M++   + G  ++AR VF  MP
Sbjct: 141 CVFGLKACTVLLDDEVGMELVRMAVRKGFHLHPHVGSSMINFLVKCGNLNDARMVFDGMP 200

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
            ++ + WN ++  YV  G ++E  +LF       +   +  M   +K       +KL   
Sbjct: 201 ERDVVCWNSIIGGYVQEGLLKEVIQLFVEMISCGIRPSSVTMASILKACGESGHKKLGTC 260

Query: 171 MHV--------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
           +HV         DV    +++  Y   GD   A  +F++   + + +W AM+SG VQNGM
Sbjct: 261 VHVFVLALGMGDDVFVLTSLVDMYCNVGDTESAFLVFNRMCSRSLISWNAMISGCVQNGM 320

Query: 223 LDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + E+ + F ++ Q     +  +  +++ G  Q++ ++  + L   +  + + S   + T 
Sbjct: 321 VPESFSLFHKLVQSGDGFDSGTLVSLIRGCSQTSDLENGKVLHACIIRKGLESNLVLSTA 380

Query: 279 ----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
               Y + G I QA  +F  M +R+ ++W A++ G +Q G+ E AL +F  ++ +  + N
Sbjct: 381 IVDMYSKCGAIKQASDVFRTMEKRNVITWTAMLVGLSQNGYAEGALKLFCRMQEENVAAN 440

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF- 393
             T    +  CA + +L+ G+ +HG +++ GYE      +AL+ MY KCG I  A  +F 
Sbjct: 441 SVTLVSLVHCCAHLGSLKKGRSVHGHLIRHGYEFNAVNMSALIDMYAKCGKIHSAEKLFY 500

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
            G   KDV+  N+MI GY  HG G QAL V++ M    +KP++ T V +L+ACSH+GL++
Sbjct: 501 NGFHLKDVILCNSMIMGYGMHGQGHQALRVYDRMIDERLKPNQTTFVSMLTACSHSGLVE 560

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            G   F+ M + +++ PS KHY C +DLL RAG LEEA  L++ +P EP      ALLG 
Sbjct: 561 EGRTLFHCMERVHNIKPSDKHYACFVDLLSRAGYLEEAYALVKQIPVEPSIDVLEALLGG 620

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            RIH N  +G + A+ +  ++  N+G+YV+LSN+Y+ + RW     +R  MR  G++K  
Sbjct: 621 CRIHKNINMGIQIADRLISLDYLNTGIYVMLSNIYSEARRWESVNYIRGLMRKRGLKKTP 680

Query: 574 GYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKE 633
            +S  EV N++  F  GD  HP  + I   LE L L++   GYV+ T  VL DV E  K 
Sbjct: 681 AFSLTEVGNQVFTFFAGDDSHPGWENIKQLLENLRLEVEASGYVADTSCVLRDVNETMKV 740

Query: 634 HMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRF 693
            +L  HSE+LA+AFG+L  P G  IR+ KNLR+C DCH   K+ISKIV R II+RD++RF
Sbjct: 741 QLLWGHSERLAIAFGLLNTPYGSLIRITKNLRICVDCHTVTKYISKIVKREIIVRDANRF 800

Query: 694 HHFNEGICSCGDYW 707
           HHF  G CSC DYW
Sbjct: 801 HHFVNGECSCNDYW 814



 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/425 (24%), Positives = 198/425 (46%), Gaps = 48/425 (11%)

Query: 120 LLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV-- 177
           L+  Y + G +  A ++FD     E I  N +MGGF+K        KLF  M +RD+   
Sbjct: 78  LIKIYSNLGFLNYAYKVFDQCPHRETILCNAMMGGFLKNMEYKEVPKLFKMMGLRDIELN 137

Query: 178 -------------------------------------SWNTMISGYAQDGDMSQAKNLFD 200
                                                  ++MI+   + G+++ A+ +FD
Sbjct: 138 SYTCVFGLKACTVLLDDEVGMELVRMAVRKGFHLHPHVGSSMINFLVKCGNLNDARMVFD 197

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQKNEISYNAMVAGYVQSNKM 254
             P +DV  W +++ GYVQ G+L E    F +M      P    ++      G     K+
Sbjct: 198 GMPERDVVCWNSIIGGYVQEGLLKEVIQLFVEMISCGIRPSSVTMASILKACGESGHKKL 257

Query: 255 DMARELFEAMPSR--NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
                +F        +V    +++  Y   GD   A  +F+ M  R  +SW A+ISG  Q
Sbjct: 258 GTCVHVFVLALGMGDDVFVLTSLVDMYCNVGDTESAFLVFNRMCSRSLISWNAMISGCVQ 317

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
            G   E+ ++F ++ + G+  +  T    +  C+  + LE GK +H  +++ G E+   +
Sbjct: 318 NGMVPESFSLFHKLVQSGDGFDSGTLVSLIRGCSQTSDLENGKVLHACIIRKGLESNLVL 377

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
             A++ MY KCG+I +A+DVF  +E+++V++W  M+ G +++G+ + AL +F  M+   V
Sbjct: 378 STAIVDMYSKCGAIKQASDVFRTMEKRNVITWTAMLVGLSQNGYAEGALKLFCRMQEENV 437

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
             + +T+V ++  C+H G + +G      + + +    ++ + + +ID+  + G++  A+
Sbjct: 438 AANSVTLVSLVHCCAHLGSLKKGRSVHGHLIR-HGYEFNAVNMSALIDMYAKCGKIHSAE 496

Query: 493 DLMRN 497
            L  N
Sbjct: 497 KLFYN 501



 Score =  109 bits (273), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 116/249 (46%), Gaps = 12/249 (4%)

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           +I  Y   G +  A K+FD  P R+ +   A++ G+ +   Y+E   +F  +      LN
Sbjct: 78  LIKIYSNLGFLNYAYKVFDQCPHRETILCNAMMGGFLKNMEYKEVPKLFKMMGLRDIELN 137

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
             T    L  C  +   E+G ++    V+ G+     VG++++    KCG++ +A  VF+
Sbjct: 138 SYTCVFGLKACTVLLDDEVGMELVRMAVRKGFHLHPHVGSSMINFLVKCGNLNDARMVFD 197

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
           G+ E+DVV WN++I GY + G  K+ + +F  M + G++P  +TM  +L AC  +G    
Sbjct: 198 GMPERDVVCWNSIIGGYVQEGLLKEVIQLFVEMISCGIRPSSVTMASILKACGESGHKKL 257

Query: 455 GT-----EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
           GT          M  D  V  S      ++D+    G  E A  L+ N        SW A
Sbjct: 258 GTCVHVFVLALGMGDDVFVLTS------LVDMYCNVGDTESAF-LVFNRMCSRSLISWNA 310

Query: 510 LLGASRIHG 518
           ++     +G
Sbjct: 311 MISGCVQNG 319



 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 4/160 (2%)

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
           K IH Q+++       F+   L+ +Y   G +  A  VF+    ++ +  N M+ G+ ++
Sbjct: 57  KSIHAQIIRNYASNQHFLATKLIKIYSNLGFLNYAYKVFDQCPHRETILCNAMMGGFLKN 116

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF-YSMNKDYSVTPSSK 473
              K+   +F+ M    ++ +  T V  L AC+     + G E    ++ K + + P   
Sbjct: 117 MEYKEVPKLFKMMGLRDIELNSYTCVFGLKACTVLLDDEVGMELVRMAVRKGFHLHPHVG 176

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
             + MI+ L + G L +A+ +   MP E     W +++G 
Sbjct: 177 --SSMINFLVKCGNLNDARMVFDGMP-ERDVVCWNSIIGG 213


>Medtr7g011030.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:2861060-2858958 | 20130731
          Length = 700

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/671 (36%), Positives = 380/671 (56%), Gaps = 38/671 (5%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           +++  N ++  YV+  +L  AR LFD M  + VVS+N ++ GY  +G   E  ++F  M 
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 111 ----HKNAISWNGLLAAYVHNGRIEEA--CRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
                 N   +  +L+A  H+GR+ E   C  F       L  +  +   FVK  ++   
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGF-------LFKFGLVFHHFVKSSLVHMY 166

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
            K F       V+         ++ G++             D F + ++++  V++G L 
Sbjct: 167 SKCFHVDLALQVLE--------SEHGNIDN---------DNDAFCYNSVLNALVESGRLG 209

Query: 225 EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMA----RELFEAMPSRNVSSWNTMI 276
           EA     +M  +    + ++Y +++    Q   + +      +L +   + +V   + ++
Sbjct: 210 EAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLV 269

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             +G+ GD+  ARK+FD +  R+ V W ++++ Y Q G +EE LN+   + R+G   N  
Sbjct: 270 DMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEF 329

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
           TF+  L+  A +AAL  G  +H +V K G +    VGNAL+ MY KCG I  + DVF  +
Sbjct: 330 TFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDM 389

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGT 456
             +D+++WN MI GY++HG GKQAL++F+ M + G  P+ +T VGVLSAC+H  L++ G 
Sbjct: 390 RNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGF 449

Query: 457 EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRI 516
            Y   + K + V P  +HYTC++ +L RAG LEEA++ MR    +    +W  LL A  I
Sbjct: 450 YYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNI 509

Query: 517 HGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           H N  LG K AE + +M+P + G Y LLSN+YA +  W     +R  MR+  V+K  G S
Sbjct: 510 HRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVS 569

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHML 636
           W+E++N +H F+     HPE  +IY  ++ L   +++ GYV + + VLHDVE+E+KE  L
Sbjct: 570 WIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYL 629

Query: 637 KYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHF 696
            YHSEKLA+A+G++ IP+  PIRVIKNLR+CEDCH A+K ISK+  RLII+RD+ RFHHF
Sbjct: 630 NYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHF 689

Query: 697 NEGICSCGDYW 707
            +G C+C D+W
Sbjct: 690 RDGTCTCTDHW 700



 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 202/429 (47%), Gaps = 33/429 (7%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNAR----FSLARDLFDKMPQRDLVSWNVMLTGYVRNRR 67
           +F+ M  RS VSYN ++ GYL +        L +++   + Q +   +  +L+    + R
Sbjct: 77  LFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGR 136

Query: 68  LGDARRLFDSMPQKDVV----SWNAMLSGYAQNGYADEAREVFYQMPHKN------AISW 117
           + +  +    + +  +V      ++++  Y++  + D A +V  +  H N      A  +
Sbjct: 137 VFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVL-ESEHGNIDNDNDAFCY 195

Query: 118 NGLLAAYVHNGRIEEAC----RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM-- 171
           N +L A V +GR+ EA     R+ D    W+ +++  +MG   + + LG   ++  ++  
Sbjct: 196 NSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLK 255

Query: 172 --HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
                DV   + ++  + + GD+  A+ +FD   +++V  WT++++ Y+QNG  +E    
Sbjct: 256 GGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNL 315

Query: 230 FDQMPQK----NEISYNAMV---AGYVQSNKMDMARELFEAMPSRN-VSSWNTMITGYGQ 281
              M ++    NE ++  ++   AG       D+     E +  +N V   N +I  Y +
Sbjct: 316 LSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSK 375

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
            G I  +  +F  M  RD ++W A+I GY+Q G  ++AL +F ++   GE  N  TF   
Sbjct: 376 CGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGV 435

Query: 342 LSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK- 399
           LS CA +A +  G     Q++K    E G      ++ +  + G + EA +     + K 
Sbjct: 436 LSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKW 495

Query: 400 DVVSWNTMI 408
           DVV+W  ++
Sbjct: 496 DVVAWRVLL 504



 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 115/283 (40%), Gaps = 54/283 (19%)

Query: 8   SALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS----WNVMLTGY- 62
           SA +VF+ +  R+ V + ++++ YL+N  F    +L   M +   +S    + V+L  + 
Sbjct: 280 SARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFA 339

Query: 63  ------------VRNRRLGDARR----------------------LFDSMPQKDVVSWNA 88
                        R  +LG   R                      +F  M  +D+++WNA
Sbjct: 340 GMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNA 399

Query: 89  MLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLFDS----- 139
           M+ GY+Q+G   +A  +F  M       N +++ G+L+A  H   + E     +      
Sbjct: 400 MICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHF 459

Query: 140 KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMSQ---- 194
           K +  L  + C++    +  ML  A        V+ DVV+W  +++      + +     
Sbjct: 460 KVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKI 519

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
           A+ +    P +D+ T+T + + Y +    D        M ++N
Sbjct: 520 AETILQMDP-RDMGTYTLLSNMYAKARSWDSVTMIRKMMRERN 561


>Medtr1g040635.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:15046911-15042560 | 20130731
          Length = 737

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/689 (37%), Positives = 383/689 (55%), Gaps = 37/689 (5%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQK---DVVSWNAMLSGYAQNGYADEAREVFYQM--- 109
           N +++ Y + + +  AR++FD +  +   D V+WN+++S Y+     + A  +F +M   
Sbjct: 49  NAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVG 108

Query: 110 ----PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW--ELISWNCLMGGFVKRKMLGA 163
               P    +     +  Y+  G        F  +S    ++   N L+  + K   +  
Sbjct: 109 YGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMED 168

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQ 219
           A K+F++M  +DVV+WN M++GY+Q+G    A +LF    ++    DV TW++++SGY Q
Sbjct: 169 ANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQ 228

Query: 220 NGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMAREL------FEAMPSRN- 268
            G   EA   F QM     + N ++  ++++       +   +E       F      N 
Sbjct: 229 RGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHND 288

Query: 269 ----VSSWNTMITGYGQNGDIAQARKLFD-MMPQ-RDCVSWAAIISGYAQTGHYEEALNM 322
               ++  N +I  Y +   +  AR +FD + P+ RD V+W  +I GYAQ G    AL +
Sbjct: 289 DTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQL 348

Query: 323 FIEIKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQVVKTG--YETGCFVGNALLG 378
           F E+ +    +  N  T SC L +CA ++AL  GKQIH  V++    Y    FV N L+ 
Sbjct: 349 FSEMFKIDNCIVPNDFTISCVLMSCARLSALNFGKQIHAYVLRRSLIYSDVLFVANCLID 408

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY K G +  A  VF+ + +++ VSW +++ GY  HG  + A  VF+ M+   + PD IT
Sbjct: 409 MYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVPDGIT 468

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            + VL ACSH+G++DRG   FY M+KD+ V P  +HY CM+DLLGRAGRL EA  L+ +M
Sbjct: 469 FLVVLYACSHSGMVDRGINLFYRMSKDFGVDPGVEHYACMVDLLGRAGRLCEATRLINDM 528

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
             EP    W +LL A R H N EL E AA+ + +++  N G Y LLSN+YA + RW D  
Sbjct: 529 SMEPTPVVWISLLSACRTHSNIELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVA 588

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R  M+  G++K  G+SWV+ +  +  F VGD  H +  +IY  L +L  +++  GYV 
Sbjct: 589 RIRYLMKRTGIKKRPGWSWVQGRKGMETFYVGDRTHSQSLKIYETLADLIQRIKAIGYVP 648

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHIS 678
            T   LHDV++EEK   L  HSEKLA+A+ ILT+P G PIR+ KNLR+C DCH+AI +IS
Sbjct: 649 QTNFALHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDCHSAITYIS 708

Query: 679 KIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            IV   IILRDS RFHHF  G CSC  YW
Sbjct: 709 MIVEHEIILRDSSRFHHFKNGSCSCKGYW 737



 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 169/363 (46%), Gaps = 64/363 (17%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  + A +VF  M  +  V++NAM++GY +N RF  A  LF KM +  +         
Sbjct: 162 KCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI--------- 212

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISW 117
                             + DVV+W++++SGYAQ G+  EA +VF QM       N ++ 
Sbjct: 213 ------------------ESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 254

Query: 118 NGLLAAYVHNGRI----EEACRLF---------DSKSDWELISWNCLMGGFVKRKMLGAA 164
             LL+A    G +    E  C            D   D  +I  N L+  + K K L  A
Sbjct: 255 MSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVI--NALIDMYAKCKSLEVA 312

Query: 165 RKLFDKM--HVRDVVSWNTMISGYAQDGDMSQAKNLF------DQSPHQDVFTWTAMVSG 216
           R +FD++    RDVV+W  MI GYAQ GD + A  LF      D     + FT + ++  
Sbjct: 313 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMS 372

Query: 217 YVQNGMLDEARTFFDQMPQKNEI------SYNAMVAGYVQSNKMDMARELFEAMPSRNVS 270
             +   L+  +     + +++ I        N ++  Y +S  +D A+ +F++M  RN  
Sbjct: 373 CARLSALNFGKQIHAYVLRRSLIYSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAV 432

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEI 326
           SW +++TGYG +G    A ++FD M +     D +++  ++   + +G  +  +N+F  +
Sbjct: 433 SWTSLLTGYGMHGRSEDAFRVFDEMRKEALVPDGITFLVVLYACSHSGMVDRGINLFYRM 492

Query: 327 KRD 329
            +D
Sbjct: 493 SKD 495



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/505 (22%), Positives = 223/505 (44%), Gaps = 80/505 (15%)

Query: 9   ALRVFNTMPRR---SSVSYNAMISGY----LRNARFSLARDL---FDKMPQRDLVSWNVM 58
           A +VF+ +  R    SV++N+++S Y    + N   SL R++   +  +P    V   + 
Sbjct: 64  ARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILP 123

Query: 59  LTGYVRNRRLGDARRLF--DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS 116
           + GY+     G     F   S   +DV   NA++  YA+ G  ++A +VF +M  K+ ++
Sbjct: 124 VCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVT 183

Query: 117 WNGLLAAYVHNGRIEEACRLF----DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM- 171
           WN ++  Y  NGR E+A  LF    + K + ++++W+ ++ G+ +R     A  +F +M 
Sbjct: 184 WNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMC 243

Query: 172 ---------------------------------------------HVRDVVSWNTMISGY 186
                                                           D+   N +I  Y
Sbjct: 244 GCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMY 303

Query: 187 AQDGDMSQAKNLFDQ--SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ------KNE 238
           A+   +  A+ +FD+     +DV TWT M+ GY Q+G  + A   F +M +       N+
Sbjct: 304 AKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPND 363

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNVS------SWNTMITGYGQNGDIAQARKLF 292
            + + ++    + + ++  +++   +  R++         N +I  Y ++GD+  A+ +F
Sbjct: 364 FTISCVLMSCARLSALNFGKQIHAYVLRRSLIYSDVLFVANCLIDMYSKSGDVDTAQVVF 423

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
           D M +R+ VSW ++++GY   G  E+A  +F E++++    +  TF   L  C+    ++
Sbjct: 424 DSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVPDGITFLVVLYACSHSGMVD 483

Query: 353 LGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAG 410
            G  +  ++ K  G + G      ++ +  + G + EA  +   +  E   V W ++++ 
Sbjct: 484 RGINLFYRMSKDFGVDPGVEHYACMVDLLGRAGRLCEATRLINDMSMEPTPVVWISLLSA 543

Query: 411 YARHGFGKQALMVFESMKTIGVKPD 435
              H      L  F + K + +K D
Sbjct: 544 CRTH--SNIELAEFAAKKLLELKAD 566



 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 145/317 (45%), Gaps = 54/317 (17%)

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQR---DCVSWAAIISGYAQTGHYEEALNMFI 324
           NV   N +I+ YG+   +  ARK+FD +  R   D V+W +I+S Y+       A+++F 
Sbjct: 44  NVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFR 103

Query: 325 EIKRDGESLNRSTFSCA--LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           E+   G  +   T      L  C  +     G+Q+HG  V++G     FVGNAL+ MY K
Sbjct: 104 EMTV-GYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAK 162

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTM----------------------------------- 407
           CG + +AN VFE +  KDVV+WN M                                   
Sbjct: 163 CGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSV 222

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-YFYSM---- 462
           I+GYA+ GFG +A+ VF  M     +P+ +T++ +LSAC+  G +  G E + YS+    
Sbjct: 223 ISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFIL 282

Query: 463 ----NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM-PFEPPAASWGALLGASRIH 517
               N D   T        +ID+  +   LE A+ +   + P +    +W  ++G    H
Sbjct: 283 KGEHNDD---TDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQH 339

Query: 518 GNTELGEKAAEMVFKME 534
           G+     +    +FK++
Sbjct: 340 GDANHALQLFSEMFKID 356



 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 6/189 (3%)

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
           TF      C +I+  ELG  IHG V++ G+E+  FV NA++ MY KC ++  A  VF+ +
Sbjct: 12  TFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 71

Query: 397 EEK---DVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGLI 452
             +   D V+WN++++ Y+       A+ +F  M    G+ PD + +V +L  C + GL 
Sbjct: 72  CYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLG 131

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
             G +  +       +         ++D+  + G++E+A  +   M F+    +W A++ 
Sbjct: 132 LCGRQ-VHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFK-DVVTWNAMVT 189

Query: 513 ASRIHGNTE 521
               +G  E
Sbjct: 190 GYSQNGRFE 198


>Medtr4g086490.1 | PPR containing plant protein | HC |
            chr4:33903624-33910415 | 20130731
          Length = 1183

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/732 (33%), Positives = 398/732 (54%), Gaps = 56/732 (7%)

Query: 31   YLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV----SW 86
            Y+        R +FDK+    +  WN++++ Y +     ++  LF  M +  VV    ++
Sbjct: 414  YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 473

Query: 87   NAMLSGYAQNGYADEAREVF-YQMP---HKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
              +L  +A  G   E + V  Y +      N    N L+AAY   G +E A  LFD  S+
Sbjct: 474  TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 533

Query: 143  WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV-----------VSW------------ 179
             +++SWN ++ G V     G   ++F +M +  V           V+W            
Sbjct: 534  PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRAL 593

Query: 180  ----------------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                            NT++  Y++ G+++ A  +F +     + +WT+ ++ YV+ G+ 
Sbjct: 594  HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLY 653

Query: 224  DEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTM 275
             +A   FD+M  K    +  +  ++V     S+ +D  R++   +       N+   N +
Sbjct: 654  SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 713

Query: 276  ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
            I  Y + G + +AR +F  +P +D VSW  +I GY+Q     EAL +F+++++  +  + 
Sbjct: 714  INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKP-DD 772

Query: 336  STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
             T +C L  CA +AAL+ G++IHG +++ GY +   V  AL+ MY KCG +  A  +F+ 
Sbjct: 773  ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 832

Query: 396  IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
            I +KD++SW  MIAGY  HGFG +A+  F  M+  G++PDE +   +L+ACSH+GL++ G
Sbjct: 833  IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEG 892

Query: 456  TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
             ++F SM  +  V P  +HY C++DLL R G L +A   + +MP +P    WG LL   R
Sbjct: 893  WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 952

Query: 516  IHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY 575
            IH + +L EK AE +F++EP N+  YV+L+N+YA + +W +   +R RM+  G ++  G 
Sbjct: 953  IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 1012

Query: 576  SWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM 635
            SW+EV  K + F  G+  HP+  RI   L +L ++M+ E Y S  + VL + ++ EKE +
Sbjct: 1013 SWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMI 1072

Query: 636  LKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHH 695
               HSEK A+AFGIL +P GR +RV KN RVC DCH   K +SK   R I+LRDS+RFHH
Sbjct: 1073 QCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHH 1132

Query: 696  FNEGICSCGDYW 707
            F +G+CSC D +
Sbjct: 1133 FKDGLCSCRDAF 1144



 Score =  188 bits (478), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 181/715 (25%), Positives = 312/715 (43%), Gaps = 105/715 (14%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD-LVSWNVMLTGYVRNR---- 66
           V  T+P  S    +   S Y + +     R +F K P+R  L+   V ++    N     
Sbjct: 279 VSKTIPTSSPYHTHKTTSNYTKKSH---NRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSV 335

Query: 67  ------------RLGDARRLFDSMPQKD-----VVSWNAMLSGYAQNGYADEAREVFYQM 109
                        +GD R   + + +       + S+ ++L   A+    ++ + V + +
Sbjct: 336 TQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRV-HSV 394

Query: 110 PHKNAISWNGLLAA-----YVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
              N IS +  L A     YV+ G + +  ++FD   + ++  WN LM  + K      +
Sbjct: 395 IISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRES 454

Query: 165 RKLFDKMHVRDVVS---------------------------------------WNTMISG 185
             LF KM    VV                                         N++I+ 
Sbjct: 455 VSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAA 514

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISY 241
           Y + G +  A NLFD+    DV +W +M++G V NG        F QM     + +  + 
Sbjct: 515 YFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTL 574

Query: 242 NAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQ 297
            +++  +     + + R L     +A  S  V   NT++  Y + G++  A ++F  M  
Sbjct: 575 VSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGD 634

Query: 298 RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQI 357
              VSW + I+ Y + G Y +A+ +F E++  G   +  T +  +  CA  ++L+ G+ +
Sbjct: 635 TTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDV 694

Query: 358 HGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFG 417
           H  V+K G  +   V NAL+ MY KCGS+ EA  VF  I  KD+VSWNTMI GY+++   
Sbjct: 695 HSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLP 754

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYT 476
            +AL +F  M+    KPD+ITM  VL AC+    +D+G E + + + + Y    S  H  
Sbjct: 755 NEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYF---SDLHVA 810

Query: 477 C-MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH--GNTELGEKAAEMVFKM 533
           C ++D+  + G L  AQ L   +P +    SW  ++    +H  GN  +       +  +
Sbjct: 811 CALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGI 869

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMR-DVGVQ-KVTGYSW-VEVQNKIHKFTVG 590
           EP  S   V+L N  + SG   +     + MR + GV+ K+  Y+  V++  ++   +  
Sbjct: 870 EPDESSFSVIL-NACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLS-- 926

Query: 591 DCFHPEKDRIYAFLEELDLKMRRE--GYVSSTKLVLHDVEEEEK--EHMLKYHSE 641
                   + Y F+E + +K      G + S   + HDV+  EK  EH+ +   +
Sbjct: 927 --------KAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPD 973



 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 161/333 (48%), Gaps = 25/333 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNV 57
           + G+ + A  VF  M   + VS+ + I+ Y+R   +S A  LFD+M  +    D+ +   
Sbjct: 618 KCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTS 677

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVS----WNAMLSGYAQNGYADEAREVFYQMPHKN 113
           ++     +  L   R +   + +  + S     NA+++ YA+ G  +EAR VF ++P K+
Sbjct: 678 IVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKD 737

Query: 114 AISWNGLLAAYVHNGRIEEACRLF-DSKSDWEL--ISWNCLMGGFVKRKMLGAARK---- 166
            +SWN ++  Y  N    EA  LF D +  ++   I+  C++        L   R+    
Sbjct: 738 IVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGH 797

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEA 226
           +  + +  D+     ++  YA+ G +  A+ LFD  P +D+ +WT M++GY  +G  +EA
Sbjct: 798 ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 857

Query: 227 RTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMIT 277
            + F++M     + +E S++ ++     S  ++   + F +M +       +  +  ++ 
Sbjct: 858 ISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 917

Query: 278 GYGQNGDIAQARKLFDMMP-QRDCVSWAAIISG 309
              + G++++A K  + MP + D   W  ++SG
Sbjct: 918 LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 68/322 (21%)

Query: 2    RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----------- 50
            + G  + A  VF+ +P +  VS+N MI GY +N+  + A +LF  M ++           
Sbjct: 719  KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACV 778

Query: 51   ---------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                       DL     ++  Y +   L  A+ LFD +P+KD+
Sbjct: 779  LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 838

Query: 84   VSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFDS 139
            +SW  M++GY  +G+ +EA   F +M       +  S++ +L A  H+G + E  + F+S
Sbjct: 839  ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNS 898

Query: 140  KS-----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMS 193
                   + +L  + C++    +   L  A K  + M ++ D   W  ++SG     D+ 
Sbjct: 899  MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 958

Query: 194  Q----AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF--------FDQMPQKNEI-- 239
                 A+++F+  P    + +  + + Y +    +E +          F Q P  + I  
Sbjct: 959  LAEKVAEHIFELEPDNTRY-YVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017

Query: 240  --SYNAMVAG---YVQSNKMDM 256
               +N  VAG   + Q+ ++D+
Sbjct: 1018 GGKFNIFVAGNSKHPQAKRIDV 1039


>Medtr1g059280.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:21515828-21518970 | 20130731
          Length = 616

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/575 (39%), Positives = 349/575 (60%), Gaps = 14/575 (2%)

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKM----HVRDVVSWNTMISGYAQDGDMSQAKNLFDQS 202
           ++N ++   V ++     +++   M    ++  V     +I  Y +   +  A N+FD+ 
Sbjct: 42  NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 101

Query: 203 PHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAR 258
           P ++V +WTAM+S Y Q G   +A   F QM     + NE ++  ++     S    + R
Sbjct: 102 PERNVVSWTAMISAYSQRGYASQALNLFLQMLRSGTEPNEFTFATVLTSCTSSLGFILGR 161

Query: 259 ELFEAMPSRN----VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
           ++   +   N    V   ++++  Y ++G I +AR +F+ +P+RD VS  AIISGYAQ G
Sbjct: 162 QIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG 221

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
             EEAL +F  ++ +G   N  T++  L+  + +AAL+LGKQ+H  V+++   +   + N
Sbjct: 222 LDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQN 281

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVK 433
           +L+ MY KCG++  +  +F+ + E+ V+SWN M+ GY++HG G++ L +F  M+    VK
Sbjct: 282 SLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVK 341

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNK-DYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           PD +T++ VLS CSH GL D+G   F  M+     V P  +HY C++DLLGR+GR+EEA 
Sbjct: 342 PDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAF 401

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
           + ++ MPFEP AA WG+LLGA R+H N ++GE A + + ++EP N+G YV+LSNLYA++G
Sbjct: 402 EFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAG 461

Query: 553 RWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
           RW D  ++R  M    V K  G S +E+   +H F   D  HP ++ I   ++EL    +
Sbjct: 462 RWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFK 521

Query: 613 REGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHN 672
             GYV     VLHDV+EE+KE +L  HSEKLA++FG++  PA  PIRVIKNLR+C DCHN
Sbjct: 522 EVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHN 581

Query: 673 AIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
             K+ISK+ GR + LRD +RFH    G CSC DYW
Sbjct: 582 FAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 616



 Score =  133 bits (334), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 117/467 (25%), Positives = 216/467 (46%), Gaps = 79/467 (16%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           ++  Y +   LGDA  +FD MP+++VVSW AM+S Y+Q GYA +A  +F QM  ++    
Sbjct: 81  LIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFLQML-RSGTEP 139

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD-V 176
           N    A V                   L S    +G  + R++      L  K++  D V
Sbjct: 140 NEFTFATV-------------------LTSCTSSLGFILGRQI----HSLIIKLNYEDHV 176

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-- 234
              ++++  YA+DG + +A+ +F+  P +DV + TA++SGY Q G+ +EA   F ++   
Sbjct: 177 FVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGE 236

Query: 235 --QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW----NTMITGYGQNGDIAQA 288
             + N ++Y  ++        +D+ +++   +    + S+    N++I  Y + G++  +
Sbjct: 237 GMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYS 296

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS-TFSCALSTCAD 347
           R++FD M +R  +SW A++ GY++ G   E L +F  ++ + +    S T    LS C+ 
Sbjct: 297 RRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS- 355

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG-IE-EKDVVSWN 405
                     HG +   G           L ++         ND+  G IE E  +  + 
Sbjct: 356 ----------HGGLEDKG-----------LNIF---------NDMSSGKIEVEPKMEHYG 385

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD 465
            ++    R G  ++A   FE +K +  +P       +L AC     +D G    ++  + 
Sbjct: 386 CVVDLLGRSGRVEEA---FEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGE---FAGQQL 439

Query: 466 YSVTP-SSKHYTCMIDLLGRAGRLEEA---QDLM--RNMPFEPPAAS 506
             + P ++ +Y  + +L   AGR E+    +DLM  + +  EP  +S
Sbjct: 440 LEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSS 486



 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 176/380 (46%), Gaps = 67/380 (17%)

Query: 6   CDS---ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNVM 58
           CDS   A  VF+ MP R+ VS+ AMIS Y +    S A +LF +M     + +  ++  +
Sbjct: 88  CDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFLQMLRSGTEPNEFTFATV 147

Query: 59  LTG-----------------------------------YVRNRRLGDARRLFDSMPQKDV 83
           LT                                    Y ++ ++ +AR +F+ +P++DV
Sbjct: 148 LTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDV 207

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFDS 139
           VS  A++SGYAQ G  +EA E+F ++       N +++ G+L A      ++   ++ + 
Sbjct: 208 VSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNH 267

Query: 140 KSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
               E+ S+    N L+  + K   L  +R++FD M+ R V+SWN M+ GY++ G+  + 
Sbjct: 268 VLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREV 327

Query: 196 KNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ-KNEIS-----YNAM 244
             LF     +     D  T  A++SG    G+ D+    F+ M   K E+      Y  +
Sbjct: 328 LKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCV 387

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSS-WNTMITG--YGQNGDIAQ--ARKLFDMMPQRD 299
           V    +S +++ A E  + MP    ++ W +++       N DI +   ++L ++ P  +
Sbjct: 388 VDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPG-N 446

Query: 300 CVSWAAIISGYAQTGHYEEA 319
             ++  + + YA  G +E+ 
Sbjct: 447 AGNYVILSNLYASAGRWEDV 466



 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 20/234 (8%)

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
           +S +    H ++ L   +++   G ++    ++  L+ C +  A   G+++H  ++KT Y
Sbjct: 15  LSTFTTHIHLQQPL---LQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRY 71

Query: 367 ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFES 426
               F+   L+ +Y KC S+G+A++VF+ + E++VVSW  MI+ Y++ G+  QAL +F  
Sbjct: 72  LPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFLQ 131

Query: 427 MKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK----DYSVTPSSKHYTCMIDLL 482
           M   G +P+E T   VL++C+ +     G +    + K    D+    SS     ++D+ 
Sbjct: 132 MLRSGTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSS-----LLDMY 186

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG--EKAAEMVFKME 534
            + G++ EA+ +   +P E    S  A+     I G  +LG  E+A E+  +++
Sbjct: 187 AKDGKIHEARTVFECLP-ERDVVSCTAI-----ISGYAQLGLDEEALELFRRLQ 234


>Medtr1g111020.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:50133605-50130067 | 20130731
          Length = 1017

 Score =  456 bits (1174), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/721 (34%), Positives = 396/721 (54%), Gaps = 56/721 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N ++  Y +  +FS ++ LF  + +  +VSWN + + +V++  L +   LF  M +  V 
Sbjct: 122 NTLVVMYAKCGQFSDSKKLFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVR 181

Query: 85  SWNAMLS-------GYAQNGYADEAREVFYQMPHK-NAISWNGLLAAYVHNGRIEEACRL 136
                LS       G    G       +  ++ H  +  S N L+  Y   GRIE+A  +
Sbjct: 182 PNEYSLSIILNACAGLRDGGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVDV 241

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGDM 192
           F      + +SWN ++ G V  +    A  L ++M       +V + ++ +   A  G  
Sbjct: 242 FREMIHPDTVSWNAIIAGCVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGLK 301

Query: 193 SQAKNLFDQS----PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-SYNAMVAG 247
              + +   S       D+F    ++  Y +  M+D+AR  +D MP K+ I + NA+++G
Sbjct: 302 DLGRQIHSCSVKIDSDSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNALISG 361

Query: 248 YVQSNKMDMARELFEAMPSRNVS------------------------------------- 270
           Y Q    + A  LF  +   N+                                      
Sbjct: 362 YSQCGDDEQAISLFFELHHENIDFNQTTLSTVLKSVASLQQIKVCKQIHTLSIKCGIYSD 421

Query: 271 --SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
               N+++  YG+   I +A K+F+     D V++ ++I+ Y+Q G  EEAL ++++++ 
Sbjct: 422 FYVINSLLDTYGKCSHIDEASKIFEERTWEDLVAYTSMITAYSQHGDAEEALKLYLQMQV 481

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
                +    S  L+ CA+++A E GKQ+H   +K G+ +  F  N+L+ MY KCGSI +
Sbjct: 482 ADIKPDPFVCSSLLNACANLSAYEQGKQLHVHAIKFGFMSDIFASNSLVNMYAKCGSIED 541

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A+  F  I ++ +VSW+ MI G A+HG GK+AL++F  M    V P+ IT+V VL AC+H
Sbjct: 542 ADRAFSEIPQRGIVSWSAMIGGLAQHGHGKEALIMFNQMLKDCVSPNHITLVSVLCACNH 601

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           AGL++ G +YF +M + + + P+ +H+ CMIDLLGR+G+L EA +L+ ++PFE   + WG
Sbjct: 602 AGLVNEGKQYFETMEEKFGIKPTQEHHACMIDLLGRSGKLNEAVELVNSIPFEADGSVWG 661

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           ALLGA+RIH N ELGEKAAE +F +EP  SG  VLL+N+YA++G W +  N+R  M++  
Sbjct: 662 ALLGAARIHKNVELGEKAAERLFTLEPDKSGTLVLLANIYASAGMWENVANVRKVMQNSN 721

Query: 569 VQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVE 628
           V+K  G SW+EV+++IH F VGD  H   D I+A L+EL   + + GY    +  +H+VE
Sbjct: 722 VKKEPGMSWIEVKDRIHTFIVGDRNHSRSDEIFAKLDELSELLSKAGYSPIIETDIHNVE 781

Query: 629 EEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILR 688
             EKE +L +HSEKLAVAFG++  P G PIRV KNLRVC DCH  +K +SK+V R I++ 
Sbjct: 782 RSEKEKLLYHHSEKLAVAFGLIVTPPGAPIRVKKNLRVCVDCHTFLKLVSKLVSRQIVIE 841

Query: 689 D 689
           +
Sbjct: 842 E 842



 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 137/566 (24%), Positives = 245/566 (43%), Gaps = 93/566 (16%)

Query: 56  NVMLTGYVRNRRLGDARRLFD-SMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP---- 110
           N +LT Y  +RR G A  L D S   + VVSW+A++S Y QNG+  EA   F +M     
Sbjct: 20  NHLLTFYSNSRRFGYACNLLDQSTEPRTVVSWSALISRYVQNGFHKEALLAFNEMCTLGV 79

Query: 111 -----------------------------------HKNAISWNGLLAAYVHNGRIEEACR 135
                                                +A   N L+  Y   G+  ++ +
Sbjct: 80  KSNEFTFPTVLKACSIKKDLNMGKKVHAMTVVSGFESDAFVSNTLVVMYAKCGQFSDSKK 139

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM------------------------ 171
           LF    +  ++SWN L    V+   L     LF +M                        
Sbjct: 140 LFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVRPNEYSLSIILNACAGLRD 199

Query: 172 ---------------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                          H  D  S N ++  YA+ G +  A ++F +  H D  +W A+++G
Sbjct: 200 GGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVDVFREMIHPDTVSWNAIIAG 259

Query: 217 YVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW 272
            V +   D A    ++M +     N  + ++ +         D+ R++       +  S 
Sbjct: 260 CVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGLKDLGRQIHSCSVKIDSDSD 319

Query: 273 NTMITG----YGQNGDIAQARKLFDMMPQRD-CVSWAAIISGYAQTGHYEEALNMFIEIK 327
             +  G    Y +   +  AR+ +D+MP +D  ++  A+ISGY+Q G  E+A+++F E+ 
Sbjct: 320 LFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNALISGYSQCGDDEQAISLFFELH 379

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
            +    N++T S  L + A +  +++ KQIH   +K G  +  +V N+LL  Y KC  I 
Sbjct: 380 HENIDFNQTTLSTVLKSVASLQQIKVCKQIHTLSIKCGIYSDFYVINSLLDTYGKCSHID 439

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA+ +FE    +D+V++ +MI  Y++HG  ++AL ++  M+   +KPD      +L+AC+
Sbjct: 440 EASKIFEERTWEDLVAYTSMITAYSQHGDAEEALKLYLQMQVADIKPDPFVCSSLLNACA 499

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           +    ++G +      K +           ++++  + G +E+A      +P +    SW
Sbjct: 500 NLSAYEQGKQLHVHAIK-FGFMSDIFASNSLVNMYAKCGSIEDADRAFSEIP-QRGIVSW 557

Query: 508 GALLGASRIHGNTELGEKAAEMVFKM 533
            A++G    HG+   G++A  M  +M
Sbjct: 558 SAMIGGLAQHGH---GKEALIMFNQM 580



 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 176/371 (47%), Gaps = 21/371 (5%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPH-QDVFTWTAMVSGYVQNGMLDEARTFFDQM----P 234
           N +++ Y+       A NL DQS   + V +W+A++S YVQNG   EA   F++M     
Sbjct: 20  NHLLTFYSNSRRFGYACNLLDQSTEPRTVVSWSALISRYVQNGFHKEALLAFNEMCTLGV 79

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARK 290
           + NE ++  ++        ++M +++          S     NT++  Y + G  + ++K
Sbjct: 80  KSNEFTFPTVLKACSIKKDLNMGKKVHAMTVVSGFESDAFVSNTLVVMYAKCGQFSDSKK 139

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           LF M+ +   VSW A+ S + Q+    E +++F  +       N  + S  L+ CA +  
Sbjct: 140 LFGMILEPGVVSWNALFSCHVQSDFLAETVDLFKRMVEGKVRPNEYSLSIILNACAGLRD 199

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
             +G+ +HG ++K G+    F  NAL+ MY K G I +A DVF  +   D VSWN +IAG
Sbjct: 200 GGIGRTVHGLLMKLGHGLDQFSANALVDMYAKAGRIEDAVDVFREMIHPDTVSWNAIIAG 259

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP 470
              H +   AL++   MK  G  P+  T+   L AC+  GL D G +      K   +  
Sbjct: 260 CVLHEYNDLALILLNEMKKSGSCPNVFTLSSALKACAAMGLKDLGRQIHSCSVK---IDS 316

Query: 471 SSKHYTC--MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG--EKA 526
            S  +    +IDL  +   +++A+     MP +    +  AL     I G ++ G  E+A
Sbjct: 317 DSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKDHIIAGNAL-----ISGYSQCGDDEQA 371

Query: 527 AEMVFKMEPHN 537
             + F++   N
Sbjct: 372 ISLFFELHHEN 382



 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/434 (20%), Positives = 172/434 (39%), Gaps = 128/434 (29%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ------------ 49
           + G  + A+ VF  M    +VS+NA+I+G + +    LA  L ++M +            
Sbjct: 231 KAGRIEDAVDVFREMIHPDTVSWNAIIAGCVLHEYNDLALILLNEMKKSGSCPNVFTLSS 290

Query: 50  --------------RDLVSWNV-------------MLTGYVRNRRLGDARRLFDSMPQKD 82
                         R + S +V             ++  Y +   + DARR +D MP KD
Sbjct: 291 ALKACAAMGLKDLGRQIHSCSVKIDSDSDLFVAVGLIDLYSKCEMMDDARRAYDLMPTKD 350

Query: 83  -VVSWNAMLSGYAQNGYADEAREVFYQMPHKNA--------------------------- 114
            +++ NA++SGY+Q G  ++A  +F+++ H+N                            
Sbjct: 351 HIIAGNALISGYSQCGDDEQAISLFFELHHENIDFNQTTLSTVLKSVASLQQIKVCKQIH 410

Query: 115 ------------ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLG 162
                          N LL  Y     I+EA ++F+ ++  +L+++  ++  + +     
Sbjct: 411 TLSIKCGIYSDFYVINSLLDTYGKCSHIDEASKIFEERTWEDLVAYTSMITAYSQHGDAE 470

Query: 163 AARKLFDKMHV---------------------------------------RDVVSWNTMI 183
            A KL+ +M V                                        D+ + N+++
Sbjct: 471 EALKLYLQMQVADIKPDPFVCSSLLNACANLSAYEQGKQLHVHAIKFGFMSDIFASNSLV 530

Query: 184 SGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEI 239
           + YA+ G +  A   F + P + + +W+AM+ G  Q+G   EA   F+QM +     N I
Sbjct: 531 NMYAKCGSIEDADRAFSEIPQRGIVSWSAMIGGLAQHGHGKEALIMFNQMLKDCVSPNHI 590

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDM 294
           +  +++     +  ++  ++ FE M  +            MI   G++G + +A +L + 
Sbjct: 591 TLVSVLCACNHAGLVNEGKQYFETMEEKFGIKPTQEHHACMIDLLGRSGKLNEAVELVNS 650

Query: 295 MP-QRDCVSWAAII 307
           +P + D   W A++
Sbjct: 651 IPFEADGSVWGALL 664


>Medtr2g035620.1 | PPR containing plant protein | HC |
           chr2:15068017-15065354 | 20130731
          Length = 887

 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 265/755 (35%), Positives = 410/755 (54%), Gaps = 52/755 (6%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD-------LVSWN 56
           G  D+A RVF+ +  R  VS+N+MI+   R   + LA  LF  M   +       LVS  
Sbjct: 134 GDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVA 193

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQKD--VVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
              +  +    LG     F  +   D    + NA+++ YA+ G   EA+ +F     K+ 
Sbjct: 194 HACSNLINGLLLGKQVHAF-VLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDL 252

Query: 115 ISWNGLLAAYVHNGRIEEACR----LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
           +SWN ++++   N R EEA      +  S      ++   ++      +MLG  +++   
Sbjct: 253 VSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAF 312

Query: 171 MHVRDVVSWNT-----MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
           + + + +  N+     ++  Y       + + +FD    + +  W AM++GYV+N    E
Sbjct: 313 VLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYE 372

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW---------NTMI 276
           A   F +M  +  +S N++    V    +     L +      V  W         N ++
Sbjct: 373 AIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALM 432

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR-------- 328
             Y + G I  AR +F  M ++D VSW  +I+GY   G +++ALN+  +++R        
Sbjct: 433 DMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRIN 492

Query: 329 ------DGESL----NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
                 D ++     N  T    L  CA +AAL  GK+IH   VK        VG+AL+ 
Sbjct: 493 TFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVD 552

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-----VK 433
           MY KCG +  +  VFE +  ++V++WN +I  Y  HG G++AL +F  M   G     ++
Sbjct: 553 MYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIR 612

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           P+E+T + + ++ SH+G++D G   FY+M   + + P+S HY C++DLLGR+G++EEA +
Sbjct: 613 PNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYN 672

Query: 494 LMRNMPFE-PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
           L++ MP       +W +LLGA +IH N E+GE AA+ +F ++P+ +  YVLLSN+Y+++G
Sbjct: 673 LIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVASYYVLLSNIYSSAG 732

Query: 553 RWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
            W  A ++R +M++ GV+K  G SW+E  +++HKF  GD  HP+   ++ +LE L L+M+
Sbjct: 733 LWDQAIDVRKKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMK 792

Query: 613 REGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHN 672
           +EGYV  T  VLH+V EEEKE ML  HSE+LA+AFG+L    G  IRV KNLRVC DCH 
Sbjct: 793 KEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHV 852

Query: 673 AIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           A K ISKIV R IILRD  RFHHF  G CSCGDYW
Sbjct: 853 ATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 887



 Score =  132 bits (333), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 166/351 (47%), Gaps = 16/351 (4%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN-- 237
           N+ ++ Y + GD+  A+ +FD+  ++D  +W +M++   +    + A   F  M  +N  
Sbjct: 124 NSFVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVG 183

Query: 238 EISYNAMVAGYVQSNKMD--MARELFEAMPSRNVSSW-----NTMITGYGQNGDIAQARK 290
             S+  +   +  SN ++  +  +   A   RN   W     N ++T Y + G + +A+ 
Sbjct: 184 PTSFTLVSVAHACSNLINGLLLGKQVHAFVLRN-GDWRTFTNNALVTMYAKLGRVYEAKT 242

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           LFD+   +D VSW  IIS  +Q   +EEAL     + + G   N  T +  L  C+ +  
Sbjct: 243 LFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEM 302

Query: 351 LELGKQIHGQVV-KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
           L  GK+IH  V+         FVG AL+ MY  C    +   VF+G+  + +  WN MIA
Sbjct: 303 LGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIA 362

Query: 410 GYARHGFGKQALMVF-ESMKTIGVKPDEITMVGVLSACSHA-GLIDRGTEYFYSMNKDYS 467
           GY R+ F  +A+ +F E +  +G+ P+ +T+  VL AC      +D+  E  +S    + 
Sbjct: 363 GYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDK--EGIHSCVVKWG 420

Query: 468 VTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
                     ++D+  R GR+E A+ +  +M       SW  ++    + G
Sbjct: 421 FEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMITGYVVCG 470



 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 170/341 (49%), Gaps = 34/341 (9%)

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELF-- 261
           HQ + T+T MV+  V               P  N  ++ A++        +++ ++L   
Sbjct: 67  HQAISTYTNMVTAGV---------------PPDN-FAFPAVLKATAGIQDLNLGKQLHAH 110

Query: 262 -----EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
                +A+P+   +  N+ +  YG+ GDI  AR++FD +  RD VSW ++I+   +   +
Sbjct: 111 VFKFGQALPT---AVPNSFVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEW 167

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCAD-IAALELGKQIHGQVVKTGYETGCFVGNA 375
           E A+++F  +  +       T       C++ I  L LGKQ+H  V++ G +   F  NA
Sbjct: 168 ELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNA 226

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           L+ MY K G + EA  +F+  ++KD+VSWNT+I+  +++   ++AL+    M   GV+P+
Sbjct: 227 LVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPN 286

Query: 436 EITMVGVLSACSHAGLIDRGTEY--FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
            +T+  VL ACSH  ++  G E   F  MN D  +  +S     ++D+     + E+ + 
Sbjct: 287 GVTLASVLPACSHLEMLGCGKEIHAFVLMNND--LIENSFVGCALVDMYCNCKQPEKGRL 344

Query: 494 LMRNMPFEPPAASWGALL-GASRIHGNTELGEKAAEMVFKM 533
           +   M F    A W A++ G  R   + E  E   EMVF++
Sbjct: 345 VFDGM-FRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFEL 384



 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 8/196 (4%)

Query: 303 WAAIISGYAQTGH-YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           W + +    Q+   + +A++ +  +   G   +   F   L   A I  L LGKQ+H  V
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
            K G      V N+ + MY KCG I  A  VF+ I  +D VSWN+MI    R    + A+
Sbjct: 112 FKFGQALPTAVPNSFVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 422 MVFESMKTIGVKPDEITMVGVLSACS---HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
            +F  M    V P   T+V V  ACS   +  L+ +    F   N D+    ++     +
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNA----L 227

Query: 479 IDLLGRAGRLEEAQDL 494
           + +  + GR+ EA+ L
Sbjct: 228 VTMYAKLGRVYEAKTL 243



 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 157/367 (42%), Gaps = 93/367 (25%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP------------- 48
           R G  + A  +F +M R+  VS+N MI+GY+   R   A +L   M              
Sbjct: 437 RMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDD 496

Query: 49  ---------QRDLVSWNVMLTGYVRNRRLGDARRL----FDSMPQKDVVSWNAMLSGYAQ 95
                    + + V+   +L G      LG  + +       M  KDV   +A++  YA+
Sbjct: 497 YEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAK 556

Query: 96  NGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGF 155
            G  + +R VF QM  +N I+WN L+ AY  +G+ EEA +LF                  
Sbjct: 557 CGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLF------------------ 598

Query: 156 VKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
             R+M+                          ++GD ++     +  P++   T+ A+ +
Sbjct: 599 --RRMV--------------------------EEGDNNR-----EIRPNE--VTYIAIFA 623

Query: 216 GYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPS--RN 268
               +GM+DE    F  M  K+ I      Y  +V    +S +++ A  L + MPS  + 
Sbjct: 624 SLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKK 683

Query: 269 VSSWNTMITG--YGQNGDIAQ--ARKLFDMMPQRDCVSWAAIISG-YAQTGHYEEALNMF 323
           V +W++++      QN +I +  A+ LF + P  +  S+  ++S  Y+  G +++A+++ 
Sbjct: 684 VDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP--NVASYYVLLSNIYSSAGLWDQAIDVR 741

Query: 324 IEIKRDG 330
            ++K  G
Sbjct: 742 KKMKEKG 748


>Medtr5g013950.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:4606693-4603955 | 20130731
          Length = 735

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 373/643 (58%), Gaps = 49/643 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           ++G+ + A  +F+ MP R+ V+YNAM+S YL++     A+  FD MP+R++VSW  ML+G
Sbjct: 84  KHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSG 143

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y     + DAR++FD MP+++VVSWN+M+ G  +NG  +EAR+VF   P KN +SWN ++
Sbjct: 144 YAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMI 203

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
             YV NGR+++A  LFD      +I+W  ++ G+ +   +  A +LF  M  ++VVSW  
Sbjct: 204 EGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTA 263

Query: 182 MISGYAQDGDMSQAKNLF-------DQSPHQDVFT------------------------- 209
           MI G+A +G   +A  LF       D  P+++ F                          
Sbjct: 264 MIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILN 323

Query: 210 -WT----------AMVSGYVQNGMLDEARTFFD-QMPQKNEISYNAMVAGYVQSNKMDMA 257
            W           ++V  Y   G++D AR+ F+  M   ++ S+N+M+ GYVQ+ ++  A
Sbjct: 324 RWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKA 383

Query: 258 RELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQ--RDCVSWAAIISGYAQTGH 315
           +ELF+ +P RN  +W  MI+GY   G + +A  LFD MP   +D ++W  +I GY Q   
Sbjct: 384 QELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNEL 443

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT--GYETGCFVG 373
             EA+N+F E+   G S   ST++        +A L+LG Q+H   +KT   YE   ++ 
Sbjct: 444 IAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLE 503

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
           N+L+ MY KCG I +A  +F  +  +D +SWN+MI G + HG   +AL ++E+M   GV 
Sbjct: 504 NSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVY 563

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           PD +T +GVL+AC+HAG +D+G E F  M  DY++ P  +HY  +I++LGRAGR+++A++
Sbjct: 564 PDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLEHYVSIINILGRAGRVKDAEE 623

Query: 494 LMRNMPFEPPAASWGALLGASRI-HGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
            +  +P EP    WGAL+G   +   + ++  +AA  + +++P N+  +V L N+YAA+ 
Sbjct: 624 FVLRLPVEPNHTIWGALIGVCGLSKTDADIARRAATRLLELDPLNAPGHVTLCNIYAAND 683

Query: 553 RWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHP 595
           R  +  ++R  MR  GV+K  G SW+ V+ K+H F+ GD   P
Sbjct: 684 RHLEETSLRREMRMKGVRKAPGCSWILVKGKVHAFSSGDRLDP 726



 Score =  260 bits (665), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/492 (32%), Positives = 268/492 (54%), Gaps = 22/492 (4%)

Query: 88  AMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           + L  Y  NG+  EAR + +  P    H   + W  +L  Y  +G +E+A  LFD     
Sbjct: 42  SQLLHYLTNGFLHEARTILHSFPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHR 101

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP 203
            ++++N ++  +++  M   A++ FD M  R+VVSW  M+SGYA  G +  A+ +FD+ P
Sbjct: 102 NIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMP 161

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEA 263
            ++V +W +MV G ++NG L+EAR  FD  P KN +S+NAM+ GYV++ +MD A++LF+ 
Sbjct: 162 ERNVVSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFDQ 221

Query: 264 MPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
           +  RNV +W +MI+GY + GD+ +A +LF +MP+++ VSW A+I G+A  G Y EAL +F
Sbjct: 222 IECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLF 281

Query: 324 IEIKRDGES-LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET---GCFVGNALLGM 379
           +++    ++  N  TF   +  CA +    LGKQ+H Q++   ++     C +G +L+ M
Sbjct: 282 LDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVRM 341

Query: 380 YFKCGSIGEANDVFEG-IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           Y  CG +  A  VFEG ++  D  S+N+MI GY + G   +A  +F+   T+ ++ ++I 
Sbjct: 342 YSVCGLMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKAQELFD---TVPIR-NKIA 397

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
              ++S    AG + + +  F  M         S  +T MI    +   + EA +L   M
Sbjct: 398 WTCMISGYLSAGQVLKASNLFDDMPDS---DKDSIAWTLMIYGYVQNELIAEAINLFAEM 454

Query: 499 PFE---PPAASWGALLGASRIHGNTELGEKAAEMVFK-MEPHNSGMYV--LLSNLYAASG 552
             +   P  +++  L GA       +LG +   M  K +  +   +Y+   L ++YA  G
Sbjct: 455 MAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKCG 514

Query: 553 RWADAGNMRSRM 564
              DA  + S M
Sbjct: 515 EIEDAYRIFSNM 526


>Medtr1g007610.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:453448-455881 | 20130731
          Length = 668

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/611 (39%), Positives = 381/611 (62%), Gaps = 21/611 (3%)

Query: 110 PHKNAISWNGL-LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           P  N  S  GL +   ++NG +E        ++ +  +   C M G +K+  L     L 
Sbjct: 66  PSLNPNSTTGLHVLDLINNGSLEP------DRTIYNKLLKRCTMLGKLKQGKL-VHTHLM 118

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
           +     D+V  N+++  YA+ G +  A+ +FD+   +DV TWT+M++GY Q+G    A T
Sbjct: 119 NSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATT 178

Query: 229 ---FFDQMPQ----KNEISYNAMV--AGYVQS--NKMDMARELFEAMPSRNVSSWNTMIT 277
               F +M +     NE + +++V   G++ S  +   +    ++     NV   ++++ 
Sbjct: 179 ALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVD 238

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
            Y + G++ ++R +FD +  ++ VSW A+ISG+A+ G  EEAL +F++++R+G      T
Sbjct: 239 MYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFT 298

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
           +S  L + +   +LE GK +H  ++K+G +   +VGN LL MY K G+I +A  VF+ + 
Sbjct: 299 YSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLV 358

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGLIDRGT 456
           + DVVS N+M+ GYA+HG GK+A+ +FE M   + ++P++IT + VL+ACSHAGL+D G 
Sbjct: 359 KVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGL 418

Query: 457 EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRI 516
            Y++ + K Y + P   HYT ++DL GRAG L++A+  +  MP EP A  WGALLGAS++
Sbjct: 419 -YYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKM 477

Query: 517 HGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           H NTE+G  AA+ V +++P   G + LLSN+YA++G+W D   +R  M+D G++K    S
Sbjct: 478 HKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACS 537

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHML 636
           WVE++N +H F+  D  HP+K+++Y   E L+ K++  GYV  T  V   V+++EKE  L
Sbjct: 538 WVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNL 597

Query: 637 KYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHF 696
           +YHSEKLA+AF +L    G  IR++KN+RVC DCH+AIK++S +V R II+RD++RFHHF
Sbjct: 598 QYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHF 657

Query: 697 NEGICSCGDYW 707
            +G CSC DYW
Sbjct: 658 RDGSCSCRDYW 668


>Medtr8g086560.1 | PPR containing plant protein | HC |
           chr8:35911406-35914374 | 20130731
          Length = 908

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/732 (33%), Positives = 397/732 (54%), Gaps = 56/732 (7%)

Query: 31  YLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV----SW 86
           Y+        R +FDK+    +  WN++++ Y +     ++  LF  M +  VV    ++
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 198

Query: 87  NAMLSGYAQNGYADEAREVF-YQMP---HKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
             +L  +A  G   E + V  Y +      N    N L+AAY   G +E A  LFD  S+
Sbjct: 199 TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 258

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHV----------------------------- 173
            +++SWN ++ G V     G   ++F +M +                             
Sbjct: 259 PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL 318

Query: 174 ----------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                      +VV  NT++  Y++ G+++ A  +F +     + +WT++++ YV+ G+ 
Sbjct: 319 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLY 378

Query: 224 DEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTM 275
            +A   FD+M  K    +  +  ++V     S+ +D  R++   +       N+   N +
Sbjct: 379 SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 438

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           I  Y + G + +AR +F  +P +D VSW  +I GY+Q     EAL +F+++++  +  + 
Sbjct: 439 INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKP-DD 497

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            T +C L  CA +AAL+ G++IHG +++ GY +   V  AL+ MY KCG +  A  +F+ 
Sbjct: 498 ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 557

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           I +KD++SW  MIAGY  HGFG +A+  F  M+  G++PDE +   +L+ACSH+GL++ G
Sbjct: 558 IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEG 617

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
            ++F SM  +  V P  +HY C++DLL R G L +A   + +MP +P    WG LL   R
Sbjct: 618 WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 677

Query: 516 IHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY 575
           IH + +L EK AE +F++EP N+  YV+L+N+YA + +W +   +R RM+  G ++  G 
Sbjct: 678 IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 737

Query: 576 SWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM 635
           SW+EV  K + F  G+  HP+  +I   L +L ++M+ E Y S  + VL + ++ EKE +
Sbjct: 738 SWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMI 797

Query: 636 LKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHH 695
              HSEK A+AFGIL +P GR +RV KN RVC DCH   K +SK     I+LRDS+RFHH
Sbjct: 798 QCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHH 857

Query: 696 FNEGICSCGDYW 707
           F +G+CSC D +
Sbjct: 858 FKDGLCSCRDAF 869



 Score =  163 bits (413), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 204/437 (46%), Gaps = 38/437 (8%)

Query: 126 HNGRIEEACRLFDSKSDWELI----SWNCLMGGFVKRKMLGAARK-LFDKMHVRDVVSWN 180
            N +I + C + D ++  EL+    S+   +  +     L A +K L D   V  V+  N
Sbjct: 64  QNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN 123

Query: 181 ----------TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
                      ++  Y   GD+ Q + +FD+  +  VF W  ++S Y + G   E+ + F
Sbjct: 124 GISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 183

Query: 231 DQMPQ----KNEISYNAMVAGYVQSNKMDMARE----LFEAMPSRNVSSWNTMITGYGQN 282
            +M +     N  ++  ++  +    K+   +     + +     N +  N++I  Y + 
Sbjct: 184 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKF 243

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           G +  A  LFD + + D VSW ++I+G    G     L +FI++   G  ++ +T    L
Sbjct: 244 GGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVL 303

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
             CA+I  L LG+ +HG  VK  +       N LL MY KCG++  A +VF  + +  +V
Sbjct: 304 VACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIV 363

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY-- 460
           SW ++IA Y R G    A+ +F+ M++ GV+PD  T+  ++ AC+ +  +D+G +     
Sbjct: 364 SWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYV 423

Query: 461 ---SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
               M  +  VT +      +I++  + G +EEA+ +   +P +    SW  ++G    +
Sbjct: 424 IKNGMGSNLPVTNA------LINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG---Y 473

Query: 518 GNTELGEKAAEMVFKME 534
               L  +A E+   M+
Sbjct: 474 SQNLLPNEALELFLDMQ 490



 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 163/333 (48%), Gaps = 25/333 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNV 57
           + G+ + A  VF  M   + VS+ ++I+ Y+R   +S A  LFD+M  +    D+ +   
Sbjct: 343 KCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTS 402

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVS----WNAMLSGYAQNGYADEAREVFYQMPHKN 113
           ++     +  L   R +   + +  + S     NA+++ YA+ G  +EAR VF ++P K+
Sbjct: 403 IVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKD 462

Query: 114 AISWNGLLAAYVHNGRIEEACRLF-DSKSDWEL--ISWNCLMGGFVKRKMLGAARK---- 166
            +SWN ++  Y  N    EA  LF D +  ++   I+  C++        L   R+    
Sbjct: 463 IVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGH 522

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEA 226
           +  + +  D+     ++  YA+ G +  A+ LFD  P +D+ +WT M++GY  +G  +EA
Sbjct: 523 ILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEA 582

Query: 227 RTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMIT 277
            + F++M     + +E S++A++     S  ++   + F +M +       +  +  ++ 
Sbjct: 583 ISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVD 642

Query: 278 GYGQNGDIAQARKLFDMMPQR-DCVSWAAIISG 309
              + G++++A K  + MP + D   W  ++SG
Sbjct: 643 LLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 135/322 (41%), Gaps = 68/322 (21%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----------- 50
           + G  + A  VF+ +P +  VS+N MI GY +N   + A +LF  M ++           
Sbjct: 444 KCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACV 503

Query: 51  ---------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                      DL     ++  Y +   L  A+ LFD +P+KD+
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 563

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW  M++GY  +G+ +EA   F +M       +  S++ +L A  H+G + E  + F+S
Sbjct: 564 ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNS 623

Query: 140 KSDW-----ELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMS 193
             +      +L  + C++    +   L  A K  + M ++ D   W  ++SG     D+ 
Sbjct: 624 MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 683

Query: 194 Q----AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF--------FDQMPQKNEI-- 239
                A+++F+  P    + +  + + Y +    +E +          F Q P  + I  
Sbjct: 684 LAEKVAEHIFELEPDNTRY-YVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742

Query: 240 --SYNAMVAG---YVQSNKMDM 256
              +N  VAG   + Q+ K+D+
Sbjct: 743 GGKFNIFVAGNSKHPQAKKIDV 764



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 45/327 (13%)

Query: 289 RKLFDMMPQRDCV--SWAAIISGYAQTGH-----YEEALNMFIEI-----------KRDG 330
           R +F   P+R C+  S   +   +  T H         +N F E+           K   
Sbjct: 30  RFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKS 89

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
             L  +++   L  CA+  +LE GK++H  ++  G      +G  L+ MY  CG + +  
Sbjct: 90  YELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGR 149

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
            +F+ I    V  WN +++ YA+ G  ++++ +F+ M+ +GV  +  T   VL   +  G
Sbjct: 150 KIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALG 209

Query: 451 LIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
            +      + Y +   +    ++     +I    + G +E A +L   +  EP   SW +
Sbjct: 210 KVKECKRVHGYVLKLGFG--SNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNS 266

Query: 510 LLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGV 569
           ++    ++G +  G    E+  +M     G+ V L+ L +     A+ GN+         
Sbjct: 267 MINGCVVNGFSGNG---LEIFIQMLI--LGVEVDLTTLVSVLVACANIGNL--------- 312

Query: 570 QKVTGYSWVEVQNKIHKFTVGDCFHPE 596
                     +   +H F V  CF  E
Sbjct: 313 ---------SLGRALHGFGVKACFSEE 330


>Medtr8g089940.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:37579244-37581349 | 20130731
          Length = 701

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/633 (37%), Positives = 373/633 (58%), Gaps = 15/633 (2%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
           N +L  YA+ G   +A+++F +M  ++  SWN LL+AY   G +E+   +FD  +  + +
Sbjct: 70  NQLLHLYAKCGKISDAQQLFDKMSKRDIYSWNALLSAYAKVGLVEDLNLVFDRMACRDSV 129

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQS 202
           S+N ++  F    + G A + F +M          S+   +   +Q  D    K +  + 
Sbjct: 130 SYNTMIACFASNWLSGKALRFFVRMQEDGFRPTQYSYVNALQACSQLLDFRLGKQIHGRV 189

Query: 203 P----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAR 258
                 ++VF W A+   Y + G +D AR  FD M  KN +S+N M++GYV+  K D   
Sbjct: 190 VVGEFEKNVFVWNAVTDLYAKCGDIDRARWLFDGMVNKNLVSWNLMISGYVKMGKPDECI 249

Query: 259 ELFEAMPSRNVS----SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
             F  M    +     + ++++  Y Q+G +  AR +FD + ++D + W  +I GYAQ+G
Sbjct: 250 SFFNKMQLSGLKPDQVTVSSVLNAYFQSGRVDDARNMFDKIDKKDEICWTTMIVGYAQSG 309

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
             E+AL +F E+ R     +  T S  +S+CA +A+L  G+ +HG+V+  G ++   V +
Sbjct: 310 REEDALMLFSEMLRGNVRPDSHTISTVVSSCAKLASLYHGQAVHGKVILMGVDSNMLVSS 369

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
           AL+ MY KCG   +A  +FE +  K+V+ WN+MI GYA++G  ++AL ++E M     KP
Sbjct: 370 ALVDMYCKCGVPLDARVIFETMPIKNVIIWNSMILGYAQNGEAEEALTLYERMLQENFKP 429

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
           D I+ VGVLSAC +  ++  G ++F S+++   +TP+  HY CMI LLGR+G +++A DL
Sbjct: 430 DNISFVGVLSACINTNMVKEGRKHFDSISEQ-GMTPTLDHYACMIILLGRSGNIDKALDL 488

Query: 495 MRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRW 554
           ++ MP +P    W ALL      G+ +  E AA  +F+++PHN+G Y++LSNLYAA GRW
Sbjct: 489 IKGMPHKPDCRIWSALLSVCS-KGDIKTAEVAANHIFQLDPHNAGSYIMLSNLYAACGRW 547

Query: 555 ADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRRE 614
            D   +RS M+    +K + YSWVE+  K+H+F   D  HPE ++IY+ L  L   +++ 
Sbjct: 548 KDVAVVRSLMKSKNAKKFSAYSWVEIGKKVHRFVSDDHNHPEMEKIYSELNRLIGILQQI 607

Query: 615 GYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG-RPIRVIKNLRVCEDCHNA 673
           GY   T +VLH+V EEEK   + +HSEKLA+AF ++    G  PIR+IKN+R+C+DCH  
Sbjct: 608 GYNPDTGIVLHNVGEEEKLRSISHHSEKLALAFSLIKKSNGAAPIRIIKNIRICDDCHEF 667

Query: 674 IKHISKIVGRLIILRDSHRFHHFNEGICSCGDY 706
           +K  S  + R II+RDS RFHHF  G CSC D+
Sbjct: 668 MKFASIAITRPIIIRDSSRFHHFFGGKCSCKDH 700



 Score =  159 bits (403), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 159/306 (51%), Gaps = 11/306 (3%)

Query: 198 LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK-----NEISYNAMVAGYVQSN 252
           LF + P      +T +V    Q+   ++A+     M  +     +   +N ++  Y +  
Sbjct: 22  LFTRGPASSS-DYTRLVLHCAQSNDFNQAKRLQSHMELQLFQPTDSFIHNQLLHLYAKCG 80

Query: 253 KMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
           K+  A++LF+ M  R++ SWN +++ Y + G +     +FD M  RD VS+  +I+ +A 
Sbjct: 81  KISDAQQLFDKMSKRDIYSWNALLSAYAKVGLVEDLNLVFDRMACRDSVSYNTMIACFAS 140

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
                +AL  F+ ++ DG    + ++  AL  C+ +    LGKQIHG+VV   +E   FV
Sbjct: 141 NWLSGKALRFFVRMQEDGFRPTQYSYVNALQACSQLLDFRLGKQIHGRVVVGEFEKNVFV 200

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            NA+  +Y KCG I  A  +F+G+  K++VSWN MI+GY + G   + +  F  M+  G+
Sbjct: 201 WNAVTDLYAKCGDIDRARWLFDGMVNKNLVSWNLMISGYVKMGKPDECISFFNKMQLSGL 260

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           KPD++T+  VL+A   +G +D     F  ++K   +      +T MI    ++GR E+A 
Sbjct: 261 KPDQVTVSSVLNAYFQSGRVDDARNMFDKIDKKDEIC-----WTTMIVGYAQSGREEDAL 315

Query: 493 DLMRNM 498
            L   M
Sbjct: 316 MLFSEM 321



 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 217/496 (43%), Gaps = 78/496 (15%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDL---FDKMPQRDLVSWNVMLT 60
           G    A ++F+ M +R   S+NA++S Y   A+  L  DL   FD+M  RD VS+N M+ 
Sbjct: 80  GKISDAQQLFDKMSKRDIYSWNALLSAY---AKVGLVEDLNLVFDRMACRDSVSYNTMIA 136

Query: 61  GYVRNRRLGDARRLFDSMP---------------------------------------QK 81
            +  N   G A R F  M                                        +K
Sbjct: 137 CFASNWLSGKALRFFVRMQEDGFRPTQYSYVNALQACSQLLDFRLGKQIHGRVVVGEFEK 196

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD--- 138
           +V  WNA+   YA+ G  D AR +F  M +KN +SWN +++ YV  G+ +E    F+   
Sbjct: 197 NVFVWNAVTDLYAKCGDIDRARWLFDGMVNKNLVSWNLMISGYVKMGKPDECISFFNKMQ 256

Query: 139 -SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKN 197
            S    + ++ + ++  + +   +  AR +FDK+  +D + W TMI GYAQ G    A  
Sbjct: 257 LSGLKPDQVTVSSVLNAYFQSGRVDDARNMFDKIDKKDEICWTTMIVGYAQSGREEDALM 316

Query: 198 LFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYV 249
           LF +    +   D  T + +VS   +   L   +    ++       N +  +A+V  Y 
Sbjct: 317 LFSEMLRGNVRPDSHTISTVVSSCAKLASLYHGQAVHGKVILMGVDSNMLVSSALVDMYC 376

Query: 250 QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAA 305
           +      AR +FE MP +NV  WN+MI GY QNG+  +A  L++ M Q     D +S+  
Sbjct: 377 KCGVPLDARVIFETMPIKNVIIWNSMILGYAQNGEAEEALTLYERMLQENFKPDNISFVG 436

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC---ALSTCADI-AALELGKQIHGQV 361
           ++S    T   +E    F  I   G +     ++C    L    +I  AL+L K +    
Sbjct: 437 VLSACINTNMVKEGRKHFDSISEQGMTPTLDHYACMIILLGRSGNIDKALDLIKGM---- 492

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGE----ANDVFEGIEEKDVVSWNTMIAGYARHGFG 417
               ++  C + +ALL +  K G I      AN +F+ ++  +  S+  +   YA  G  
Sbjct: 493 ---PHKPDCRIWSALLSVCSK-GDIKTAEVAANHIFQ-LDPHNAGSYIMLSNLYAACGRW 547

Query: 418 KQALMVFESMKTIGVK 433
           K   +V   MK+   K
Sbjct: 548 KDVAVVRSLMKSKNAK 563


>Medtr7g076350.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:28741911-28744729 | 20130731
          Length = 786

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/670 (37%), Positives = 375/670 (55%), Gaps = 46/670 (6%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN---------------AI 115
           AR+LFD++PQ D  + + ++S    +G ++EA +++  +  +                A+
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
           S + L    VH+      C +       ++   N L+  + K K +  AR++FD + VRD
Sbjct: 91  SGDALRVKEVHDDATR--CGVMS-----DVFVGNALIHAYGKCKCVEGARRVFDDLVVRD 143

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           VVSW ++ S Y + G   +  ++F +        W+ +    +    +  A      +  
Sbjct: 144 VVSWTSLSSCYVKCGFPRKGMDVFRE------MGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 236 KNEIS--------------YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ 281
             EI                +A+V+ Y +   +  AR +F+ MP R+V SWN ++T Y +
Sbjct: 198 GKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFK 257

Query: 282 NGDIAQARKLFDMMPQ----RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
           N +  +   LF  M +     D  +W A+I G  + G  EEA+ MF ++++ G   N  T
Sbjct: 258 NKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEIT 317

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
            S  L  C+    L +GK+IH  V +           ALL MY KCG +  + +VF+ + 
Sbjct: 318 ISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMR 377

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDVV+WNTMI   A HG GK+AL +F+ M    V+P+ +T  GVLS CSH+ L++ G +
Sbjct: 378 RKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQ 437

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F SM +D+ V P + HY+C++D+  RAGRL EA   ++ MP EP A++WGALL A R++
Sbjct: 438 IFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVY 497

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
            N EL + +A+ +F++EP+N G YV L N+   +  W++A  +R  M++ G+ K  G SW
Sbjct: 498 KNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSW 557

Query: 578 VEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLK 637
           ++V NK+H F VGD  + E D+IY FL+EL  KM+  GY   T  VL D+++EEK   L 
Sbjct: 558 LQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLC 617

Query: 638 YHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFN 697
            HSEKLAVAFGIL +     IRV KNLR+C DCHNAIK++SK+VG +I++RDS RFHHF 
Sbjct: 618 NHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFK 677

Query: 698 EGICSCGDYW 707
            G CSC D W
Sbjct: 678 NGNCSCKDLW 687



 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 198/427 (46%), Gaps = 61/427 (14%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN-----EISYNAM 244
           GD ++A+ LFD  P  D  T + ++S    +G+ +EA   +  + ++       +   A 
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQRDC 300
            A  V  + + + +E+ +      V S     N +I  YG+   +  AR++FD +  RD 
Sbjct: 86  KACAVSGDALRV-KEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 144

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           VSW ++ S Y + G   + +++F E+   G   N  T S  L  CA++  L+ GK+IHG 
Sbjct: 145 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGF 204

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR------- 413
            V+ G     FV +AL+ +Y KC S+ EA  VF+ +  +DVVSWN ++  Y +       
Sbjct: 205 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKG 264

Query: 414 ----------------------------HGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
                                       +G  ++A+ +F  M+ +G KP+EIT+  +L A
Sbjct: 265 FSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPA 324

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
           CS +  +  G E    + + + V   +   T ++ +  + G L  ++++  +M       
Sbjct: 325 CSFSENLRMGKEIHCYVFRHWKVGDLTS-TTALLYMYAKCGDLNLSRNVF-DMMRRKDVV 382

Query: 506 SWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD--AGNMRSR 563
           +W  ++ A+ +HGN   G++A  +  KM         LLS +   S  +    +G   SR
Sbjct: 383 AWNTMIIANAMHGN---GKEALFLFDKM---------LLSRVQPNSVTFTGVLSGCSHSR 430

Query: 564 MRDVGVQ 570
           + + GVQ
Sbjct: 431 LVEEGVQ 437



 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 185/388 (47%), Gaps = 34/388 (8%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+   N ++  Y + + +  ARR+FD +  +DVVSW ++ S Y + G+  +  +VF +M 
Sbjct: 112 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREM- 170

Query: 111 HKNAISWNGLLAAYVHNGRIEEAC-RLFDSKSDWE-------------LISWNCLMGGFV 156
                 W+G+    +    I  AC  L D KS  E             L   + L+  + 
Sbjct: 171 -----GWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYA 225

Query: 157 KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTA 212
           K   +  AR +FD M  RDVVSWN +++ Y ++ +  +  +LF +        D  TW A
Sbjct: 226 KCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNA 285

Query: 213 MVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMAREL----FEAM 264
           ++ G ++NG  +EA   F +M     + NEI+ ++++     S  + M +E+    F   
Sbjct: 286 VIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHW 345

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
              +++S   ++  Y + GD+  +R +FDMM ++D V+W  +I   A  G+ +EAL +F 
Sbjct: 346 KVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFD 405

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-ETGCFVGNALLGMYFKC 383
           ++       N  TF+  LS C+    +E G QI   + +    E      + ++ +Y + 
Sbjct: 406 KMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRA 465

Query: 384 GSIGEANDVFEGIE-EKDVVSWNTMIAG 410
           G + EA    +G+  E    +W  ++A 
Sbjct: 466 GRLNEAYKFIQGMPMEPTASAWGALLAA 493



 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 149/379 (39%), Gaps = 96/379 (25%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM------ 78
           NA+I  Y +      AR +FD +  RD+VSW  + + YV+         +F  M      
Sbjct: 117 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 79  PQKDVVS---------------------------------WNAMLSGYAQNGYADEAREV 105
           P    VS                                  +A++S YA+     EAR V
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 236

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKML 161
           F  MPH++ +SWNG+L AY  N   E+   LF   S      +  +WN ++GG ++    
Sbjct: 237 FDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRS 296

Query: 162 GAARKLFDKMH---------------------------------------VRDVVSWNTM 182
             A ++F KM                                        V D+ S   +
Sbjct: 297 EEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTAL 356

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNE 238
           +  YA+ GD++ ++N+FD    +DV  W  M+     +G   EA   FD+M     Q N 
Sbjct: 357 LYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 416

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAM-------PSRNVSSWNTMITGYGQNGDIAQARKL 291
           +++  +++G   S  ++   ++F +M       P  N   ++ ++  Y + G + +A K 
Sbjct: 417 VTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN--HYSCVVDIYSRAGRLNEAYKF 474

Query: 292 FDMMPQRDCVS-WAAIISG 309
              MP     S W A+++ 
Sbjct: 475 IQGMPMEPTASAWGALLAA 493


>Medtr1g103660.1 | PPR containing plant-like protein | HC |
           chr1:46920306-46922872 | 20130731
          Length = 684

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 234/640 (36%), Positives = 372/640 (58%), Gaps = 20/640 (3%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL- 145
           N +++ Y++    + A+ V      +  ++W  L++  VHN R   A   F +     + 
Sbjct: 46  NHLVNMYSKLDLLNSAQHVLSFTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQ 105

Query: 146 ---ISWNCLMGGFVKRKMLGAARKL----FDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
               ++ C+       ++    +++         + DV    +    Y + G    A N+
Sbjct: 106 PNDFTFPCVFKASALMQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFHGDACNM 165

Query: 199 FDQSPHQDVFTWTAMVSGYVQN----GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKM 254
           FD+ PH+++ TW A +S  VQ+     ++   + F     + N I++ A +   V   ++
Sbjct: 166 FDEMPHRNLATWNAYISNAVQDRRSLDVIAAFKEFLCVHGEPNSITFCAFLNACVDMMRL 225

Query: 255 DMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISG 309
           ++ R+L   +       +VS  N +I  YG+ GDI  A  +F  +  R + VSW ++++ 
Sbjct: 226 NLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFSRIGNRKNVVSWCSMLTA 285

Query: 310 YAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG 369
             Q    E A  +F++++++ E  +    S  LS CA++  LELG+ +H   VK   +  
Sbjct: 286 LVQNHEEERACMVFLQVRKEVEPTD-FMISSVLSACAELGGLELGRSVHALAVKACVKDN 344

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK- 428
            FVG+AL+ +Y KCGSI  A  VF  + E ++V+WN MI GYA  G    AL +FE M  
Sbjct: 345 IFVGSALVDLYGKCGSIENAEQVFSELPESNLVTWNAMIGGYAHQGDIDMALRLFEEMTL 404

Query: 429 -TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGR 487
            + G++P  +T+V +LS CS  G ++RG + F SM  +Y + P ++H+ C++DLLGR+G 
Sbjct: 405 GSRGIRPSYVTLVSILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGL 464

Query: 488 LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNL 547
           ++ A + ++NMP +P  + WGALLGA R+HG TELG+ AAE +F+++  +SG +V+LSN+
Sbjct: 465 VDRAYEFIQNMPIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNM 524

Query: 548 YAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEEL 607
            A++GRW +A  +R  M+D+G++K  GYSW+ V+N+IH F   D  H     I A L +L
Sbjct: 525 LASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKL 584

Query: 608 DLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVC 667
              M+  GYV  T L L D+E+EEK   + YHSEK+A+AFG++ +P G PIR+ KNLR+C
Sbjct: 585 RGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRIC 644

Query: 668 EDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            DCH+AIK IS+IVGR II+RD+HRFH F +G CSC DYW
Sbjct: 645 GDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 154/347 (44%), Gaps = 34/347 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNAR----FSLARDLFDKMPQRDLVSWNV 57
           + G    A  +F+ MP R+  ++NA IS  +++ R     +  ++      + + +++  
Sbjct: 155 KTGFHGDACNMFDEMPHRNLATWNAYISNAVQDRRSLDVIAAFKEFLCVHGEPNSITFCA 214

Query: 58  MLTGYVRNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVFYQMPH-K 112
            L   V   RL   R+L   +     ++DV   N ++  Y + G    A  VF ++ + K
Sbjct: 215 FLNACVDMMRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFSRIGNRK 274

Query: 113 NAISWNGLLAAYVHNGRIEEACRLF------DSKSDW---ELISWNCLMGGFVKRKMLGA 163
           N +SW  +L A V N   E AC +F         +D+    ++S    +GG    ++  +
Sbjct: 275 NVVSWCSMLTALVQNHEEERACMVFLQVRKEVEPTDFMISSVLSACAELGGL---ELGRS 331

Query: 164 ARKLFDKMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
              L  K  V+D +   + ++  Y + G +  A+ +F + P  ++ TW AM+ GY   G 
Sbjct: 332 VHALAVKACVKDNIFVGSALVDLYGKCGSIENAEQVFSELPESNLVTWNAMIGGYAHQGD 391

Query: 223 LDEARTFFDQMP------QKNEISYNAMVAGYVQSNKMDMARELFEAM-----PSRNVSS 271
           +D A   F++M       + + ++  ++++   +   ++   ++FE+M            
Sbjct: 392 IDMALRLFEEMTLGSRGIRPSYVTLVSILSVCSRVGAVERGIQIFESMRLNYGIEPGAEH 451

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQRDCVS-WAAIISGYAQTGHYE 317
           +  ++   G++G + +A +    MP +  +S W A++      G  E
Sbjct: 452 FACVVDLLGRSGLVDRAYEFIQNMPIQPTISVWGALLGACRMHGKTE 498


>Medtr4g130500.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:54376407-54379381 | 20130731
          Length = 783

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/778 (33%), Positives = 396/778 (50%), Gaps = 101/778 (12%)

Query: 14  NTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARR 73
           +T P  +      +++GY    RF LA     K+ Q+        L  +   R    AR 
Sbjct: 23  STFPHLAQTHAQFILNGY----RFDLAT--LTKLTQK--------LFDFSATRH---ARA 65

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAY-VHNGRIEE 132
           LF S+P+ D+  +N ++ G++ N     +  ++  +     +S +    A+ V     ++
Sbjct: 66  LFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDK 125

Query: 133 ACRLFDSKSDWELISWNCLMGG-----FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYA 187
              L  + S  +    N  +G      + K   +  ARK+FD M  RD V WNTMI+G  
Sbjct: 126 HLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185

Query: 188 QDGDMSQAKNLF----------DQSPHQDV-----------------------------F 208
           ++     +  LF          D S    V                             +
Sbjct: 186 KNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDY 245

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN 268
             T ++S Y + G ++ AR  F ++ + + I+YNAM++G+  +   + + +LF  +    
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305

Query: 269 VSSWNTMITG---------------------------------------YGQNGDIAQAR 289
               ++ I G                                       Y +  +I  AR
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
            LFD  P++  V+W A+ISGY Q G  E A+++F E+ +   + N  T +  LS CA + 
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
           +L  GK +H  +     E   +V  AL+ MY KCG+I EA  +F+ + EK+ V+WNTMI 
Sbjct: 426 SLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIF 485

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           GY  HG+G +AL ++  M  +G  P  +T + VL ACSHAGL+  G E F++M   Y + 
Sbjct: 486 GYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE 545

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
           P  +HY CM+D+LGR+G+LE+A + ++ MP EP  A WG LLGA  IH +T++   A+E 
Sbjct: 546 PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASER 605

Query: 530 VFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTV 589
           +F+++P + G YVLLSN+Y+    +  A ++R  ++   + K  G + +EV    H F  
Sbjct: 606 LFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVS 665

Query: 590 GDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 649
           GD  H     IYA LE+L  KMR  GY + T   LHDVEEEEKE  +  HSEKLA+AFG+
Sbjct: 666 GDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGL 725

Query: 650 LTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +T   G  IR+IKNLRVC DCH A K ISKI  R+I++RD++RFHHF +GICSCGDYW
Sbjct: 726 ITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 53/250 (21%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG----- 61
           D A  +F+  P ++ V++NAMISGY +N     A  LF +M + +     V +T      
Sbjct: 362 DLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC 421

Query: 62  ----------------------------------YVRNRRLGDARRLFDSMPQKDVVSWN 87
                                             Y +   + +A +LFDSM +K+ V+WN
Sbjct: 422 AQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWN 481

Query: 88  AMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
            M+ GY  +GY  EA +++ +M H     +A+++  +L A  H G + E   +F +  + 
Sbjct: 482 TMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNK 541

Query: 144 ELIS-----WNCLMGGFVKRKMLGAARKLFDKMHVRD-VVSWNTMISG--YAQDGDMSQ- 194
             I      + C++    +   L  A +   KM V      W T++      +D D+++ 
Sbjct: 542 YRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARL 601

Query: 195 -AKNLFDQSP 203
            ++ LF+  P
Sbjct: 602 ASERLFELDP 611


>Medtr4g094402.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:37900570-37903619 | 20130731
          Length = 662

 Score =  451 bits (1161), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 356/571 (62%), Gaps = 24/571 (4%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR---NRRLGDARRLFDSMPQKDV 83
           MI+GY++    + AR LFD+MP RD+VSWN++++GY     +R + + R+LFD MPQ+D 
Sbjct: 1   MITGYVQRREIAKARQLFDEMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDC 60

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           VSWN ++SGYA+NG  D+A E+F  MP +N +S N ++  ++ NG ++ A   F    + 
Sbjct: 61  VSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMGER 120

Query: 144 ELISWNCLMGGFVKRKMLGAARKLF----DKMHVRD--VVSWNTMISGYAQDGDMSQAKN 197
           +  S + L+ G V+   L  A ++     ++   +D  V ++NT+I+GY Q G + +A++
Sbjct: 121 DSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARH 180

Query: 198 LFD-------------QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM 244
           +FD             +   ++V +W +M+  YV+ G +  AR  FD+M +++  S+N +
Sbjct: 181 VFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNTV 240

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWA 304
           + GYVQ   M+ A +LF  MP  +V SWN++I+G+ Q GD+ + ++ F+ MP ++ +SW 
Sbjct: 241 IGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLISWN 300

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT 364
           ++I+GY +   Y+ A+ +F +++  GE  +R T S  LS    +  L LGKQIH  V KT
Sbjct: 301 SVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKT 360

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMV 423
                  + N+L+ MY +CG IG+A  VF  ++  KDV++WN MI GYA HGF  QAL +
Sbjct: 361 -VVPDLPINNSLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALEL 419

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
           FE MK + ++P  IT + VL+AC+HAGL++ G   F SM  DY + P  +H+  ++D+LG
Sbjct: 420 FERMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEHFASLVDILG 479

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVL 543
           R G+L+EA DL+ NMP +P  A WGALLGA R+H N +L + AA+ + ++EP +S  Y L
Sbjct: 480 RQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVHSNVDLAQVAAKALIRLEPESSAPYAL 539

Query: 544 LSNLYAASGRWADAGNMRSRMRDVGVQKVTG 574
           L NLYA  G+W DA  +R+ M +  V+K  G
Sbjct: 540 LFNLYADLGQWDDAERVRALMEENNVKKQAG 570



 Score =  222 bits (565), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 229/464 (49%), Gaps = 60/464 (12%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGD 70
           ++F+ MP+R  VS+N +ISGY +N R   A ++F+ MP+R++VS N ++ G++ N  +  
Sbjct: 50  KLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDS 109

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN------AISWNGLLAAY 124
           A   F  M ++D  S + ++SG  +NG  D A E+  +  ++         ++N L+A Y
Sbjct: 110 AVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGY 169

Query: 125 VHNGRIEEACRLFDS-------------KSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
              G +EEA  +FD              +    ++SWN +M  +VK   + +AR+LFD+M
Sbjct: 170 GQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRM 229

Query: 172 HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
             RD  SWNT+I GY Q GDM +A  LF + P  DV +W +++SG+ Q G L   + FF+
Sbjct: 230 VERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFE 289

Query: 232 QMPQKNEISYNAMVAGYVQSNKMDMARELFEAM------PSRNVSSW------------- 272
            MP KN IS+N+++AGY ++     A ELF  M      P R+  S              
Sbjct: 290 NMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHTLSSILSVSTGLVDLYL 349

Query: 273 -------------------NTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQ 312
                              N++IT Y + G+I  AR +F+ M   +D ++W A+I GYA 
Sbjct: 350 GKQIHQFVTKTVVPDLPINNSLITMYSRCGEIGDARHVFNEMKLYKDVITWNAMIGGYAF 409

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK-QIHGQVVKTGYETGCF 371
            G   +AL +F  +K         TF   L+ CA    +E GK Q +  +   G E    
Sbjct: 410 HGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVE 469

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARH 414
              +L+ +  + G + EA D+   +  K D   W  ++     H
Sbjct: 470 HFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVH 513



 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 173/345 (50%), Gaps = 31/345 (8%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G   SA  +F+ M  R + S+N +I GY++      A  LF +MP  D++SWN +++
Sbjct: 214 VKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIIS 273

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM------PHKNA 114
           G+ +   L   +  F++MP K+++SWN++++GY +N     A E+F QM      P ++ 
Sbjct: 274 GFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQMQLKGERPDRHT 333

Query: 115 IS-----WNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
           +S       GL+  Y+     ++  +        +L   N L+  + +   +G AR +F+
Sbjct: 334 LSSILSVSTGLVDLYLG----KQIHQFVTKTVVPDLPINNSLITMYSRCGEIGDARHVFN 389

Query: 170 KMHV-RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLD 224
           +M + +DV++WN MI GYA  G  +QA  LF++     +     T+ ++++     G+++
Sbjct: 390 EMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGLVE 449

Query: 225 EARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITG 278
           E +  F+ M     I      + ++V    +  ++  A +L   MP + + + W  ++  
Sbjct: 450 EGKRQFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGA 509

Query: 279 --YGQNGDIAQ--ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
                N D+AQ  A+ L  + P+     +A + + YA  G +++A
Sbjct: 510 CRVHSNVDLAQVAAKALIRLEPE-SSAPYALLFNLYADLGQWDDA 553


>Medtr5g088310.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:38310385-38313323 | 20130731
          Length = 684

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 373/641 (58%), Gaps = 22/641 (3%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL- 145
           N +++ Y++    + A+ V      +  ++W  L++  VHN R   A   F +     + 
Sbjct: 46  NHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQ 105

Query: 146 ---ISWNCLM--GGFVKRKMLGA---ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKN 197
               ++ C+     FV+  M G       L   M + DV    +    Y + G    A N
Sbjct: 106 PNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGM-IYDVFVGCSCFDMYCKTGFRGDACN 164

Query: 198 LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNK 253
           +FD+ P +++ TW A +S  VQ+    +A   F +      + N I++ A +   V   +
Sbjct: 165 MFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVR 224

Query: 254 MDMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIIS 308
           +++ R+L   +       +VS  N +I  YG+ GDI  A  +F+ +  R + VSW ++++
Sbjct: 225 LNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLA 284

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
              Q    E A  +F++ +++ E  +    S  LS CA++  LELG+ +H   VK   E 
Sbjct: 285 ALVQNHEEERACMVFLQARKEVEPTD-FMISSVLSACAELGGLELGRSVHALAVKACVED 343

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
             FVG+AL+ MY KCGSI  A  VF  + E+++V+WN MI GYA  G    AL +FE M 
Sbjct: 344 NIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMT 403

Query: 429 --TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAG 486
             + G++P  +T++ +LS CS  G ++RG + F SM  +Y + P ++H+ C++DLLGR+G
Sbjct: 404 LGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSG 463

Query: 487 RLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSN 546
            ++ A + ++NM  +P  + WGALLGA R+HG TELG+ AAE +F+++  +SG +V+LSN
Sbjct: 464 LVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSN 523

Query: 547 LYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEE 606
           + A++GRW +A  +R  M+D+G++K  GYSW+ V+N+IH F   D  H     I A L +
Sbjct: 524 MLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGK 583

Query: 607 LDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRV 666
           L   M+  GYV  T L L D+E+EEK   + YHSEK+A+AFG++ +P G PIR+ KNLR+
Sbjct: 584 LRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRI 643

Query: 667 CEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           C DCH+AIK IS+IVGR II+RD+HRFH F +G CSC DYW
Sbjct: 644 CGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 88/345 (25%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN---------- 56
           +SA  V +    R+ V++ ++ISG + N RF  A   F  M +RD V  N          
Sbjct: 59  NSAQHVLSLTHLRTVVTWTSLISGCVHNRRFLPALLHFTNM-RRDNVQPNDFTFPCVFKA 117

Query: 57  -----VMLTG-------------------------YVRNRRLGDARRLFDSMPQKDVVSW 86
                + +TG                         Y +    GDA  +FD MPQ+++ +W
Sbjct: 118 SAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATW 177

Query: 87  NAMLSGYAQNGYADEA----REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRL--FDSK 140
           NA +S   Q+  + +A    +E        N+I++   L A V   R+    +L  F  +
Sbjct: 178 NAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVR 237

Query: 141 SDW--ELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMSQAKN 197
             +  ++   N L+  + K   + +A  +F+++  R +VVSW +M++   Q+ +  +A  
Sbjct: 238 CGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACM 297

Query: 198 LFDQSPHQ--------------------------------------DVFTWTAMVSGYVQ 219
           +F Q+  +                                      ++F  +A+V  Y +
Sbjct: 298 VFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGK 357

Query: 220 NGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM 264
            G ++ A   F ++P++N +++NAM+ GY     +DMA  LFE M
Sbjct: 358 CGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEM 402



 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 156/347 (44%), Gaps = 34/347 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNV 57
           + G    A  +F+ MP+R+  ++NA IS  +++ R   A   F +      + + +++  
Sbjct: 155 KTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCA 214

Query: 58  MLTGYVRNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVFYQMPH-K 112
            L   V   RL   R+L   +     ++DV   N ++  Y + G    A  VF ++ + K
Sbjct: 215 FLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRK 274

Query: 113 NAISWNGLLAAYVHNGRIEEACRLF-DSKSDWE--------LISWNCLMGGFVKRKMLGA 163
           N +SW  +LAA V N   E AC +F  ++ + E        ++S    +GG    ++  +
Sbjct: 275 NVVSWCSMLAALVQNHEEERACMVFLQARKEVEPTDFMISSVLSACAELGGL---ELGRS 331

Query: 164 ARKLFDKMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
              L  K  V D +   + ++  Y + G +  A+ +F + P +++ TW AM+ GY   G 
Sbjct: 332 VHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGD 391

Query: 223 LDEARTFFDQMP------QKNEISYNAMVAGYVQSNKMDMARELFEAM-----PSRNVSS 271
           +D A   F++M       + + ++  ++++   +   ++   ++FE+M            
Sbjct: 392 IDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEH 451

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQRDCVS-WAAIISGYAQTGHYE 317
           +  ++   G++G + +A +    M  +  +S W A++      G  E
Sbjct: 452 FACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTE 498


>Medtr3g096420.1 | PPR containing plant-like protein | HC |
           chr3:44072693-44069577 | 20130731
          Length = 705

 Score =  449 bits (1155), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/662 (37%), Positives = 374/662 (56%), Gaps = 41/662 (6%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGD 70
           R+  T         N ++  Y +      AR +FD M QR+  SWN +L    +   L +
Sbjct: 44  RIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDE 103

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           A  LF  MP++D  SWNAM+SG+AQ    +EA      M  ++ +     L  Y     +
Sbjct: 104 ALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFV-----LNEYSFGSAL 158

Query: 131 EEACRLFD-----------SKSDWELISW--NCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
                L D           +KS + L  +  + L+  + K +++ +A++ FD M VR++V
Sbjct: 159 SACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIV 218

Query: 178 SWNTMISGYAQDGDMSQAKNLF----------DQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
           SWN++I+ Y Q+G   +A  +F          D+     V +  A +S  ++ G+   AR
Sbjct: 219 SWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSA-IREGLQIHAR 277

Query: 228 TFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQ 287
                  + + +  NA+V  Y +  +++ AR +F+ MP R+V S  +M++GY +   +  
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKA 337

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
           AR +F  M +R+ VSW A+I+GY Q G  EEA+ +F+ +KR+       TF   L+ CA+
Sbjct: 338 ARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN 397

Query: 348 IAALELGKQIHGQVVKTGY------ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +A L+LG+Q H  ++K G+      ++  FVGN+L+ MY KCG + +   VFE + E+D 
Sbjct: 398 LADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDN 457

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
           VSWN MI GYA++G+G +AL +F  M   G +PD +TM+GVLSACSHAGL++ G  YF S
Sbjct: 458 VSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQS 517

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M  ++ + P   HYTCM+DLLGRAG L+EA +L++ MP EP A  WG+LL A ++HGN  
Sbjct: 518 MTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNIT 577

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG+  AE + +++P NSG YVLLSN+YA  GRW D   +R +MR +GV K  G SW+ +Q
Sbjct: 578 LGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQ 637

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVE--EEEKEHMLKYH 639
           + +H F V D  HP K  IY  L+ L  +M+R GYV        D E  EEE +  L  H
Sbjct: 638 SHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEAD----DDEPYEEESDSELILH 693

Query: 640 SE 641
           SE
Sbjct: 694 SE 695



 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 137/483 (28%), Positives = 223/483 (46%), Gaps = 78/483 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLV---------- 53
           G  D AL +F  MP R   S+NAM+SG+ +  RF  A      M   D V          
Sbjct: 99  GALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSAL 158

Query: 54  ---------SWNVMLTG--------------------YVRNRRLGDARRLFDSMPQKDVV 84
                    S  V + G                    Y + R +  A+R FD M  +++V
Sbjct: 159 SACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIV 218

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLF--- 137
           SWN++++ Y QNG A +A EVF +M +     + I+   + +A      I E  ++    
Sbjct: 219 SWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARV 278

Query: 138 --DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
               K   +L+  N L+  + K + +  AR +FD+M +RDVVS  +M+SGYA+   +  A
Sbjct: 279 MKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAA 338

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAGYVQS 251
           + +F     ++V +W A+++GY QNG  +EA   F  + +++      ++  ++      
Sbjct: 339 RLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANL 398

Query: 252 NKMDMAREL----------FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
             + + R+           F++    ++   N++I  Y + G +   R +F+ M +RD V
Sbjct: 399 ADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNV 458

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQI---- 357
           SW A+I GYAQ G+  EAL +F E+   GE  +  T    LS C+    +E G+      
Sbjct: 459 SWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSM 518

Query: 358 ---HGQV-VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYA 412
              HG V VK  Y   C V   LLG   + G + EAN++ + +  E D V W +++A   
Sbjct: 519 TIEHGLVPVKDHYT--CMVD--LLG---RAGCLDEANNLIQTMPMEPDAVVWGSLLAACK 571

Query: 413 RHG 415
            HG
Sbjct: 572 VHG 574



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 156/351 (44%), Gaps = 58/351 (16%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNR 66
           + A  VF+ MP R  VS  +M+SGY + +    AR +F  M +R++VSWN ++ GY +N 
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNG 364

Query: 67  RLGDARRLFDSMPQKDVVSWNAMLS-GYAQNGYADEAREVFYQMPHKNAIS---W----- 117
              +A RLF  + ++ +  W    + G   N  A+ A     +  H + +    W     
Sbjct: 365 ENEEAVRLFLLLKRESI--WPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGE 422

Query: 118 -------NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
                  N L+  Y+  G +E+   +F+   + + +SWN ++ G+ +      A ++F +
Sbjct: 423 DSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFRE 482

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
           M          ++SG               + P  D  T   ++S     G+++E R +F
Sbjct: 483 M----------LVSG---------------ERP--DHVTMIGVLSACSHAGLVEEGRCYF 515

Query: 231 DQM-------PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQN 282
             M       P K+   Y  MV    ++  +D A  L + MP   +   W +++     +
Sbjct: 516 QSMTIEHGLVPVKDH--YTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVH 573

Query: 283 GDIAQARKLFDMMPQRDCVS---WAAIISGYAQTGHYEEALNMFIEIKRDG 330
           G+I   + + + + + D ++   +  + + YA+ G +++ + +  ++++ G
Sbjct: 574 GNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMG 624



 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 56/99 (56%)

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
           D   L+ S F+  L TC    ++   + +H +++KT + +  F+ N L+ +Y KCG + +
Sbjct: 13  DLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLED 72

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM 427
           A  VF+ +++++  SWN ++    + G   +AL +F+ M
Sbjct: 73  ARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111


>Medtr8g107740.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:45554142-45556499 | 20130731
          Length = 785

 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/766 (33%), Positives = 404/766 (52%), Gaps = 73/766 (9%)

Query: 10  LRVFNTMPRRSSVSYNAMISGYLRNARFS-----LARDLFDKMPQRDLVSWNVMLTGYVR 64
           +R F+  P    VS +   +  L     S     LAR +FD++P+  +V WN+M+  Y  
Sbjct: 25  IRSFSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAW 84

Query: 65  NRRLGDARRLFDSMPQKDVVSWN---AMLSGYAQNGYADEAREVFYQMPHKNAISWN--- 118
           +     +  L+  M Q  V   N     L     +  A +   + +   H   +S +   
Sbjct: 85  SGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYV 144

Query: 119 --GLLAAYVHNGRIEEACRLFDSKS--DWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
              LL  Y   G + +A  LF+S S  D ++++WN ++  F    +         +M   
Sbjct: 145 STALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQA 204

Query: 175 DVV----SWNTMISGYAQDGDMSQAKNL---------FDQSPHQDVFTWTAMVSGYVQNG 221
            V     +  +++    Q   + Q K +         FD     +V   TA++  Y +  
Sbjct: 205 GVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFD-----NVVLQTALLDMYAKCH 259

Query: 222 MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM---------PSR----- 267
           +L  AR  F+ + +KN++ ++AM+ GYV  + +  A  L++ M         P+      
Sbjct: 260 LLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATML 319

Query: 268 --------------------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
                                     + +  N++I+ Y + G +  A    D M  +D V
Sbjct: 320 RACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTV 379

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           S++AIISG  Q G+ E+AL +F +++  G +    T    L  C+ +AAL+ G   HG  
Sbjct: 380 SYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYT 439

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           V  G+     + NA++ MY KCG I  + ++F+ ++ +D++SWNTMI GY  HG   +AL
Sbjct: 440 VVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEAL 499

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDL 481
            +F+ ++ +G+KPD++T++ VLSACSH+GL+  G  +F SM++++++ P   HY CM+DL
Sbjct: 500 SLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDL 559

Query: 482 LGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMY 541
           L RAG L+EA   ++ MPF P    WGALL A R H N E+GE+ ++ +  + P  +G +
Sbjct: 560 LARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNF 619

Query: 542 VLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIY 601
           VL+SN+Y++ GRW DA  +RS  R  G +K  G SWVE+   IH F  G   HP+   I 
Sbjct: 620 VLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASIN 679

Query: 602 AFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVI 661
             L+EL ++M++ GY + +  VLHDVEEEEKE +L YHSEK+A+AFGIL       I V 
Sbjct: 680 KKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVT 739

Query: 662 KNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           KNLR+C DCH+AIK I+ +  R I +RD+ RFHHF +GIC+C D+W
Sbjct: 740 KNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 159/389 (40%), Gaps = 82/389 (21%)

Query: 2   RNGHCDSALRVFNTMPR--RSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVML 59
           + GH   A  +FN++    R  V++NAMI+ +  +A  +       +M Q  +   +  L
Sbjct: 154 KCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTL 213

Query: 60  TGYVRNRRLGDARRLFDSMPQK----------DVVSWNAMLSGYAQNGYADEAREVFYQM 109
              +    +G A  L                 +VV   A+L  YA+      AR++F  +
Sbjct: 214 VSILPT--IGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTV 271

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMG----GFVKRKMLGAAR 165
             KN + W+ ++  YV +  I +A  L+D           C+ G          ML A  
Sbjct: 272 NKKNDVCWSAMIGGYVLHDSISDALALYDDML--------CIYGLNPTPATLATMLRACA 323

Query: 166 KLFD-----KMHVR--------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTA 212
           +L D     K+H          D    N++IS YA+ G M  A    D+   +D  +++A
Sbjct: 324 QLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSA 383

Query: 213 MVSGYVQNGMLDEARTFFDQMPQKNEISY------------------------------- 241
           ++SG VQNG  ++A   F QM       Y                               
Sbjct: 384 IISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRG 443

Query: 242 --------NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFD 293
                   NA++  Y +  K+ ++RE+F+ M +R++ SWNTMI GYG +G   +A  LF 
Sbjct: 444 FTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQ 503

Query: 294 MMP----QRDCVSWAAIISGYAQTGHYEE 318
            +     + D V+  A++S  + +G   E
Sbjct: 504 ELQALGLKPDDVTLIAVLSACSHSGLVTE 532



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +++G C     V       +S+  NA+I  Y +  + +++R++FD+M  RD++SWN M+ 
Sbjct: 429 LQHGTCCHGYTVVRGFTNDTSIC-NAIIDMYSKCGKITISREIFDRMQNRDIISWNTMII 487

Query: 61  GYVRNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           GY  +    +A  LF  +     + D V+  A+LS  + +G   E +  F  M
Sbjct: 488 GYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSM 540


>Medtr4g095065.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:39629093-39627012 | 20130731
          Length = 626

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/562 (40%), Positives = 341/562 (60%), Gaps = 41/562 (7%)

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISY 241
           Y+  G ++ +  LF+++ ++DV+TWT+++  + Q+ + D+A +++ QM     Q N  ++
Sbjct: 66  YSSLGHLNYSVTLFNRTRNRDVYTWTSIIHAHTQSKLNDQALSYYAQMLTHRIQPNAFTF 125

Query: 242 NA-------------------------------MVAGYVQSNKMDMARELFEAMPSRNVS 270
           ++                               +V GY +      A +LF+ MP +++ 
Sbjct: 126 SSLLNGSTIQPIKSIHCHVIKFGLCSDTYVATGLVDGYARGGDFISAEKLFDKMPEKSLI 185

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           S+ TM+  Y ++G + +AR LFD M   RD V W  +I GYAQ G   E L +F  +  +
Sbjct: 186 SFTTMLMCYAKHGKLLEARLLFDGMEGNRDVVVWNVMIDGYAQNGFPNECLLLFRRMLVE 245

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE----TGCFVGNALLGMYFKCGS 385
               N  T    LS+C  + ALE G+ +H   +K G +        VG AL+ MY KCGS
Sbjct: 246 KVKPNVITLLPVLSSCGQVGALESGRWVH-SYIKNGKDGVVGVEVRVGTALVDMYCKCGS 304

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           + +A  VF+ I+ KDVV+WN+MI GYA +G  ++AL +F  M   GV+P  +T + +L+A
Sbjct: 305 LEDARKVFDKIDGKDVVAWNSMIMGYAVNGLSEEALKLFHEMHGEGVRPSYVTFIALLTA 364

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
           C H+GL+ +G E F  M  +Y + P  +H+ CM++LLGRAGRL+EA DL+R+M  +P   
Sbjct: 365 CGHSGLVTKGWEMFNLMKNEYKMEPRVEHFGCMVNLLGRAGRLQEAYDLVRSMKIDPDPV 424

Query: 506 SWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMR 565
            WG LL A R+H N  LGE+ AE +   +  +SG YVLLSN+YAA+G W  A  +RS M+
Sbjct: 425 IWGTLLWACRLHNNISLGEEIAEFLLSNDLASSGTYVLLSNIYAAAGNWDGAAKVRSLMK 484

Query: 566 DVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH 625
           D GV+K  G S +EV N++H+F  GD  HP+   IY  LEE++  ++ +GY   T +VLH
Sbjct: 485 DSGVEKEPGCSIIEVNNRVHEFIAGDLKHPKSKDIYLMLEEMNSWLKGKGYTPKTDVVLH 544

Query: 626 DVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLI 685
           D+ EE+KE  L+ HSEKLA+AFG+++   G  ++++KNLRVC DCH  +K ISKI GR I
Sbjct: 545 DIGEEQKELSLEVHSEKLALAFGLISTRPGTTVKIVKNLRVCLDCHAVMKMISKITGRRI 604

Query: 686 ILRDSHRFHHFNEGICSCGDYW 707
           ++RD +RFHHF+ G CSCGD+W
Sbjct: 605 VMRDRNRFHHFDNGSCSCGDFW 626



 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 158/328 (48%), Gaps = 41/328 (12%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP-QKDV 83
             ++ GY R   F  A  LFDKMP++ L+S+  ML  Y ++ +L +AR LFD M   +DV
Sbjct: 157 TGLVDGYARGGDFISAEKLFDKMPEKSLISFTTMLMCYAKHGKLLEARLLFDGMEGNRDV 216

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLA---------------AY 124
           V WN M+ GYAQNG+ +E   +F +M       N I+   +L+               +Y
Sbjct: 217 VVWNVMIDGYAQNGFPNECLLLFRRMLVEKVKPNVITLLPVLSSCGQVGALESGRWVHSY 276

Query: 125 VHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMIS 184
           + NG+        D     E+     L+  + K   L  ARK+FDK+  +DVV+WN+MI 
Sbjct: 277 IKNGK--------DGVVGVEVRVGTALVDMYCKCGSLEDARKVFDKIDGKDVVAWNSMIM 328

Query: 185 GYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
           GYA +G   +A  LF +   + V     T+ A+++    +G++ +    F+ M  + ++ 
Sbjct: 329 GYAVNGLSEEALKLFHEMHGEGVRPSYVTFIALLTACGHSGLVTKGWEMFNLMKNEYKME 388

Query: 241 -----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQARKLFDM 294
                +  MV    ++ ++  A +L  +M    +   W T++     + +I+   ++ + 
Sbjct: 389 PRVEHFGCMVNLLGRAGRLQEAYDLVRSMKIDPDPVIWGTLLWACRLHNNISLGEEIAEF 448

Query: 295 MPQRDCVS---WAAIISGYAQTGHYEEA 319
           +   D  S   +  + + YA  G+++ A
Sbjct: 449 LLSNDLASSGTYVLLSNIYAAAGNWDGA 476



 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 20/307 (6%)

Query: 43  LFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGY 98
           LF++   RD+ +W  ++  + +++    A   +  M     Q +  +++++L+G      
Sbjct: 78  LFNRTRNRDVYTWTSIIHAHTQSKLNDQALSYYAQMLTHRIQPNAFTFSSLLNGSTIQPI 137

Query: 99  ADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKR 158
                 V       +     GL+  Y   G    A +LFD   +  LIS+  ++  + K 
Sbjct: 138 KSIHCHVIKFGLCSDTYVATGLVDGYARGGDFISAEKLFDKMPEKSLISFTTMLMCYAKH 197

Query: 159 KMLGAARKLFDKMH-VRDVVSWNTMISGYAQDGDMSQAKNLFD----QSPHQDVFTWTAM 213
             L  AR LFD M   RDVV WN MI GYAQ+G  ++   LF     +    +V T   +
Sbjct: 198 GKLLEARLLFDGMEGNRDVVVWNVMIDGYAQNGFPNECLLLFRRMLVEKVKPNVITLLPV 257

Query: 214 VSGYVQNGMLDEARTFF-------DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
           +S   Q G L+  R          D +         A+V  Y +   ++ AR++F+ +  
Sbjct: 258 LSSCGQVGALESGRWVHSYIKNGKDGVVGVEVRVGTALVDMYCKCGSLEDARKVFDKIDG 317

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMM----PQRDCVSWAAIISGYAQTGHYEEALNM 322
           ++V +WN+MI GY  NG   +A KLF  M     +   V++ A+++    +G   +   M
Sbjct: 318 KDVVAWNSMIMGYAVNGLSEEALKLFHEMHGEGVRPSYVTFIALLTACGHSGLVTKGWEM 377

Query: 323 FIEIKRD 329
           F  +K +
Sbjct: 378 FNLMKNE 384


>Medtr2g018870.1 | PPR containing plant-like protein | HC |
           chr2:6013889-6015841 | 20130731
          Length = 613

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/529 (43%), Positives = 324/529 (61%), Gaps = 12/529 (2%)

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAM 244
              MS A N+F    + +VFTW  M+ GY ++     A   + +M     + +  +Y  +
Sbjct: 87  SAPMSYAHNVFTLLYNPNVFTWNTMIRGYAESDNSTPALGLYRKMLGSCVEPDTHTYPFL 146

Query: 245 VAGYVQS-NKMDMARELFEAMPSRN-----VSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
           +    +S N  D   E+  ++  RN     +   N+++  Y   GD   A K+F++M +R
Sbjct: 147 LKAISKSLNVRD--GEMIHSVTVRNGFESLIFVRNSLLHIYAACGDTESAYKVFELMGER 204

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D V+W ++I+G+A  G   EAL++F E+   G   +  T     S CA++ ALELG+++H
Sbjct: 205 DLVAWNSVINGFALNGKPNEALSLFREMSLKGVEPDGFTVVSLFSACAELGALELGRRVH 264

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
             ++K G      V N+LL  Y KCGSI EA  VF  + E++VVSW +++ G A +GFG+
Sbjct: 265 VYLLKVGLTGNLHVNNSLLDFYAKCGSIREAQQVFSEMSERNVVSWTSLVVGLAVNGFGE 324

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
           +AL +F+ M+   + P EIT VGVL ACSH G++D G  YF  M ++Y + P  +HY CM
Sbjct: 325 EALGLFKEMERQKIVPREITFVGVLYACSHCGMLDEGFNYFRRMKEEYGIRPRIEHYGCM 384

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNS 538
           +DLL RAG ++ A + +++MP +P A  W  LLGA  +HG+  LGE A   + K+EP +S
Sbjct: 385 VDLLSRAGLVKRAYEYIQSMPMQPNAVIWRTLLGACTVHGDLSLGEIARSHLLKLEPKHS 444

Query: 539 GMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKD 598
           G YVLLSNLYA+  RW+D   +R  M + GV K  GYS VE+ N++ +FT+GD  HP   
Sbjct: 445 GDYVLLSNLYASERRWSDVQTVRRSMIEDGVWKTPGYSLVELGNRVFEFTMGDRSHPRSQ 504

Query: 599 RIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPI 658
            +YA LE++   ++ EGYV  T  VL D+EEEEKE  L YHSEK+A+AF +L    G PI
Sbjct: 505 DVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTAPGTPI 564

Query: 659 RVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           RVIKNLRVC DCH AIK ISK+  R II+RD  RFHHF+ G CSC DYW
Sbjct: 565 RVIKNLRVCADCHMAIKLISKVYAREIIIRDRSRFHHFSGGSCSCKDYW 613



 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 27/252 (10%)

Query: 62  YVRNRRL------GD---ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
           +VRN  L      GD   A ++F+ M ++D+V+WN++++G+A NG  +EA  +F +M  K
Sbjct: 176 FVRNSLLHIYAACGDTESAYKVFELMGERDLVAWNSVINGFALNGKPNEALSLFREMSLK 235

Query: 113 ----NAISWNGLLAAYVHNGRIEEACR----LFDSKSDWELISWNCLMGGFVKRKMLGAA 164
               +  +   L +A    G +E   R    L        L   N L+  + K   +  A
Sbjct: 236 GVEPDGFTVVSLFSACAELGALELGRRVHVYLLKVGLTGNLHVNNSLLDFYAKCGSIREA 295

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQN 220
           +++F +M  R+VVSW +++ G A +G   +A  LF +   Q +     T+  ++      
Sbjct: 296 QQVFSEMSERNVVSWTSLVVGLAVNGFGEEALGLFKEMERQKIVPREITFVGVLYACSHC 355

Query: 221 GMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNT 274
           GMLDE   +F +M ++  I      Y  MV    ++  +  A E  ++MP + N   W T
Sbjct: 356 GMLDEGFNYFRRMKEEYGIRPRIEHYGCMVDLLSRAGLVKRAYEYIQSMPMQPNAVIWRT 415

Query: 275 MITGYGQNGDIA 286
           ++     +GD++
Sbjct: 416 LLGACTVHGDLS 427



 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 131/279 (46%), Gaps = 20/279 (7%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVH 126
           A  +F  +   +V +WN M+ GYA++  +  A  ++ +M       +  ++  LL A   
Sbjct: 93  AHNVFTLLYNPNVFTWNTMIRGYAESDNSTPALGLYRKMLGSCVEPDTHTYPFLLKAISK 152

Query: 127 --NGRIEEACRLFDSKSDWELISW--NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
             N R  E       ++ +E + +  N L+  +       +A K+F+ M  RD+V+WN++
Sbjct: 153 SLNVRDGEMIHSVTVRNGFESLIFVRNSLLHIYAACGDTESAYKVFELMGERDLVAWNSV 212

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQ--- 235
           I+G+A +G  ++A +LF +   + V    FT  ++ S   + G L+  R     + +   
Sbjct: 213 INGFALNGKPNEALSLFREMSLKGVEPDGFTVVSLFSACAELGALELGRRVHVYLLKVGL 272

Query: 236 -KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
             N    N+++  Y +   +  A+++F  M  RNV SW +++ G   NG   +A  LF  
Sbjct: 273 TGNLHVNNSLLDFYAKCGSIREAQQVFSEMSERNVVSWTSLVVGLAVNGFGEEALGLFKE 332

Query: 295 MPQRDCV----SWAAIISGYAQTGHYEEALNMFIEIKRD 329
           M ++  V    ++  ++   +  G  +E  N F  +K +
Sbjct: 333 MERQKIVPREITFVGVLYACSHCGMLDEGFNYFRRMKEE 371



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 49/239 (20%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR------------- 50
           G  +SA +VF  M  R  V++N++I+G+  N + + A  LF +M  +             
Sbjct: 189 GDTESAYKVFELMGERDLVAWNSVINGFALNGKPNEALSLFREMSLKGVEPDGFTVVSLF 248

Query: 51  --------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
                                     +L   N +L  Y +   + +A+++F  M +++VV
Sbjct: 249 SACAELGALELGRRVHVYLLKVGLTGNLHVNNSLLDFYAKCGSIREAQQVFSEMSERNVV 308

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNGLLAAYVHNGRIEEACRLFDS- 139
           SW +++ G A NG+ +EA  +F +M  +      I++ G+L A  H G ++E    F   
Sbjct: 309 SWTSLVVGLAVNGFGEEALGLFKEMERQKIVPREITFVGVLYACSHCGMLDEGFNYFRRM 368

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMS 193
           K ++     +  + C++    +  ++  A +    M ++ + V W T++      GD+S
Sbjct: 369 KEEYGIRPRIEHYGCMVDLLSRAGLVKRAYEYIQSMPMQPNAVIWRTLLGACTVHGDLS 427


>Medtr7g089260.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:34908078-34912174 | 20130731
          Length = 1099

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 252/745 (33%), Positives = 396/745 (53%), Gaps = 91/745 (12%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +++V    ++  YV +  +  +R  FD + +K++ SWN+++S Y + G   EA     Q+
Sbjct: 52  QNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL 111

Query: 110 --------PHKNAISWNGLLAAYVH--NGRIEEACRLFDSKSDWELISWNCLMGGFVKRK 159
                      +  ++  +L A V   +G+    C +F    + ++     L+  + +  
Sbjct: 112 FSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCC-VFKMGFEDDVFVAASLVHLYSRYG 170

Query: 160 MLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-------------- 205
           +L  A K+F  M V+DV SWN MISG+ Q+G+ + A  + ++   +              
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 206 -------------------------DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
                                    DVF   A+++ Y + G L +A+  FDQM  ++ +S
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 241 YNAMVAGYVQSNKMDMARELFEAMP----------------------------------- 265
           +N+++A Y Q+N    A   F+ M                                    
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 266 -----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
                 ++V   N ++  Y + G +  A  +FD +P++D +SW  +++GY Q G   EA+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410

Query: 321 NMFIEIKRDGESL-NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
           + +  ++   +++ N+ T+   +   + + AL+ G +IH +++K       FV   L+ +
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDL 470

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y KCG + +A  +F  I     V WN +IA    HG G++AL +F+ M    VK D IT 
Sbjct: 471 YGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITF 530

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
           V +LSACSH+GL+D G + F  M K+Y + PS KHY CM+DLLGRAG LE+A +L+RNMP
Sbjct: 531 VSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMP 590

Query: 500 FEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGN 559
            +P A+ WGALL A +I+GN ELG  A++ + +++  N G YVLLSN+YA + +W     
Sbjct: 591 IQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIK 650

Query: 560 MRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSS 619
           +RS  RD G++K  G+S V V +K   F  G+  HP+   IY  L+ L  KM+  GYV  
Sbjct: 651 VRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPD 710

Query: 620 TKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISK 679
              V  D+EE+EKE +L  HSE+LA+AFGI++ P   PIR+ KNLRVC DCHNA K+IS+
Sbjct: 711 YSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISR 770

Query: 680 IVGRLIILRDSHRFHHFNEGICSCG 704
           I  R I++RDS+RFHHF +GICSC 
Sbjct: 771 ISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/492 (24%), Positives = 204/492 (41%), Gaps = 98/492 (19%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP------ 79
           +++  Y R     +A  +F  MP +D+ SWN M++G+ +N     A  + + M       
Sbjct: 161 SLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKM 220

Query: 80  ---------------------------------QKDVVSWNAMLSGYAQNGYADEAREVF 106
                                              DV   NA+++ Y++ G   +A+ VF
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280

Query: 107 YQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGF------- 155
            QM  ++ +SWN ++AAY  N     A R F          +L++   L   F       
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQR 340

Query: 156 VKRKMLGAA--RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAM 213
           + R +LG    R+  DK    DVV  N +++ YA+ G M+ A  +FDQ P +D  +W  +
Sbjct: 341 ISRSILGFVIRREWLDK----DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 214 VSGYVQNGMLDEARTFFDQMPQ-----KNEISYNAMVAGYVQ----SNKMDMARELFEAM 264
           V+GY QNG+  EA   ++ M +      N+ ++ +++  Y         M +  +L +  
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
              +V     +I  YG+ G +  A  LF  +P+   V W AII+     G  EEAL +F 
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           ++  +    +  TF   LS C+           H  +V  G                KC 
Sbjct: 517 DMLAERVKADHITFVSLLSACS-----------HSGLVDEGQ---------------KCF 550

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
            I +      GI+   +  +  M+    R G+ ++A   +E ++ + ++PD      +LS
Sbjct: 551 DIMQKE---YGIKPS-LKHYGCMVDLLGRAGYLEKA---YELVRNMPIQPDASIWGALLS 603

Query: 445 ACSHAGLIDRGT 456
           AC   G  + GT
Sbjct: 604 ACKIYGNAELGT 615



 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 16/281 (5%)

Query: 241 YNAMVAGYVQSNKMDMARELFEAM-PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
           +NA+    V  N       L      S+N+     +I  Y  +GDI+ +R  FD + +++
Sbjct: 25  FNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN 84

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKR--DGESLNRS--TFSCALSTCADIAALELGK 355
             SW +IIS Y + G Y EA+N   ++     G  L     TF   L  C  +     GK
Sbjct: 85  IFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GK 141

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
           ++H  V K G+E   FV  +L+ +Y + G +  A+ VF  +  KDV SWN MI+G+ ++G
Sbjct: 142 KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK---DYSVTPSS 472
               AL V   MK  GVK D IT+  +L  C+ +  +  G      + K   D  V  S+
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
                +I++  + GRL++AQ +   M       SW +++ A
Sbjct: 262 ----ALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/489 (22%), Positives = 195/489 (39%), Gaps = 117/489 (23%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----- 79
           NA+I+ Y +  R   A+ +FD+M  RDLVSWN ++  Y +N     A R F  M      
Sbjct: 261 NALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIR 320

Query: 80  -----------------------------------QKDVVSWNAMLSGYAQNGYADEARE 104
                                               KDVV  NA+++ YA+ GY + A  
Sbjct: 321 PDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHT 380

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           VF Q+P K+ ISWN L+  Y  NG   EA   ++                     M+   
Sbjct: 381 VFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYN---------------------MMEEC 419

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQA----KNLFDQSPHQDVFTWTAMVSGYVQN 220
           R            +W ++I  Y+  G + Q       L   S + DVF  T ++  Y + 
Sbjct: 420 RDTIPNQG-----TWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKC 474

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMI 276
           G L++A + F ++P+   + +NA++A      + + A +LF+ M +  V     ++ +++
Sbjct: 475 GRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNMF--IEIKRD 329
           +    +G + + +K FD+M +   +      +  ++    + G+ E+A  +   + I+ D
Sbjct: 535 SACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPD 594

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
                 S +   LS C      ELG     ++++   E         +G Y    +I   
Sbjct: 595 A-----SIWGALLSACKIYGNAELGTLASDRLLEVDSEN--------VGYYVLLSNIYAN 641

Query: 390 NDVFEGIEE----------KDVVSWNTMIAGYARHGF--GKQA----------LMVFES- 426
            + +EG+ +          +    W++++ G     F  G Q           L V  + 
Sbjct: 642 TEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAK 701

Query: 427 MKTIGVKPD 435
           MK++G  PD
Sbjct: 702 MKSLGYVPD 710



 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 132/302 (43%), Gaps = 29/302 (9%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ-RDLV----SWNVM 58
           G+ + A  VF+ +PR+ ++S+N +++GY +N   S A D ++ M + RD +    +W  +
Sbjct: 373 GYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSI 432

Query: 59  LTGYVRNRRLGDARRLFDSMPQK----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           +  Y     L    ++   + +     DV     ++  Y + G  ++A  +FY++P   +
Sbjct: 433 IPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTS 492

Query: 115 ISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
           + WN ++A+   +GR EEA +LF      +   + I++  L+       ++   +K FD 
Sbjct: 493 VPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDI 552

Query: 171 MHVR-----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-DVFTWTAMVS-----GYVQ 219
           M         +  +  M+    + G + +A  L    P Q D   W A++S     G  +
Sbjct: 553 MQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612

Query: 220 NGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMD---MARELFEAMPSRNVSSWNTMI 276
            G L   R    ++  +N   Y  +   Y  + K +     R L      R    W++++
Sbjct: 613 LGTLASDRLL--EVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVV 670

Query: 277 TG 278
            G
Sbjct: 671 VG 672


>Medtr1g111670.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:50487581-50485585 | 20130731
          Length = 630

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 212/541 (39%), Positives = 339/541 (62%), Gaps = 8/541 (1%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D+++ N +I+ Y++   +  A+ +FD+ P + V +W  M+    +     EA   F QM 
Sbjct: 90  DILTSNMLINMYSKCSLVHDARIVFDEMPVKSVVSWNTMIGALTRIAKEQEALMLFIQML 149

Query: 235 QK----NEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIA 286
           ++    NE + ++++        +    +L     +     N      ++  Y +   I 
Sbjct: 150 REGTLFNEFTISSVLCECAFKCAILECMQLHAFSIKVSVDSNCFVGTALLHVYAKCSSIK 209

Query: 287 QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCA 346
            A K+F+ MP+ + V+W++I++GY Q G +E AL +F + +  G   +    S A+  CA
Sbjct: 210 DASKMFESMPETNAVTWSSILAGYVQNGLHEAALLLFRDYQLMGFEQDAFLISSAVCACA 269

Query: 347 DIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNT 406
            +A L  GKQ+H    K+G+ +  +V ++L+ MY KCG I EA  VF+G E + +V WN 
Sbjct: 270 GLATLIEGKQVHAISCKSGFGSNIYVTSSLIDMYAKCGCIREAYIVFQGEELRSIVLWNA 329

Query: 407 MIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY 466
           MI+G+ RH    +A+++FE M+  G+ PD++T V VL+ACSH GL ++G +YF  M +++
Sbjct: 330 MISGFGRHACALEAMILFEKMQQRGLFPDDVTYVSVLNACSHMGLHEQGHKYFDLMVREH 389

Query: 467 SVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
           ++ PS  HY+CM+D+LGRAG + +A DL+  MPF   ++ WG+LL + RIHGN E  E A
Sbjct: 390 NLRPSVLHYSCMVDILGRAGLVHKAYDLIERMPFSATSSIWGSLLASCRIHGNIEFAEIA 449

Query: 527 AEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHK 586
           A+ +F+MEP N+G +VLL+N+YAA+ +W +    R  +RD  ++K  G SW+E++NKIH 
Sbjct: 450 AKHLFEMEPDNAGNHVLLANIYAANKKWEEVAKTRKLLRDSELKKDRGTSWIEIKNKIHS 509

Query: 587 FTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVA 646
           FTVG+  HP  + IYA L+ L  ++ +  Y   T   LHDVEE +K+ +L++HSEKLA+ 
Sbjct: 510 FTVGERNHPLINEIYAKLDSLVEELEKLNYKVDTNNDLHDVEESKKQMLLRHHSEKLAIT 569

Query: 647 FGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDY 706
           FG++ +P+  PIR++KNLR+C DCHN +K + K   R II+RD++RFHHF +G+CSCGD+
Sbjct: 570 FGLMCLPSNIPIRIMKNLRICGDCHNFMKFVCKSTSREIIIRDTNRFHHFKDGLCSCGDF 629

Query: 707 W 707
           W
Sbjct: 630 W 630



 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 36/303 (11%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           + D+++ N+++  Y +   + DAR +FD MP K VVSWN M+    +     EA  +F Q
Sbjct: 88  ETDILTSNMLINMYSKCSLVHDARIVFDEMPVKSVVSWNTMIGALTRIAKEQEALMLFIQ 147

Query: 109 MPHK----NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGG-----FVKRK 159
           M  +    N  + + +L        I E C    + S    +  NC +G      + K  
Sbjct: 148 MLREGTLFNEFTISSVLCECAFKCAILE-CMQLHAFSIKVSVDSNCFVGTALLHVYAKCS 206

Query: 160 MLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVS 215
            +  A K+F+ M   + V+W+++++GY Q+G    A  LF         QD F  ++ V 
Sbjct: 207 SIKDASKMFESMPETNAVTWSSILAGYVQNGLHEAALLLFRDYQLMGFEQDAFLISSAVC 266

Query: 216 GYVQNGMLDEARTFFDQMPQKNEISYNAMVAG--YVQSNKMDM---------ARELFEAM 264
                  L E +       Q + IS  +      YV S+ +DM         A  +F+  
Sbjct: 267 ACAGLATLIEGK-------QVHAISCKSGFGSNIYVTSSLIDMYAKCGCIREAYIVFQGE 319

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEAL 320
             R++  WN MI+G+G++    +A  LF+ M QR    D V++ ++++  +  G +E+  
Sbjct: 320 ELRSIVLWNAMISGFGRHACALEAMILFEKMQQRGLFPDDVTYVSVLNACSHMGLHEQGH 379

Query: 321 NMF 323
             F
Sbjct: 380 KYF 382



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 95/204 (46%), Gaps = 6/204 (2%)

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
           D ES   S     L  CA   +   G+  H Q +  G+ET     N L+ MY KC  + +
Sbjct: 50  DAESTRVSNLQNILQLCAKSRSSIAGRACHAQFILVGFETDILTSNMLINMYSKCSLVHD 109

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A  VF+ +  K VVSWNTMI    R    ++ALM+F  M   G   +E T+  VL  C+ 
Sbjct: 110 ARIVFDEMPVKSVVSWNTMIGALTRIAKEQEALMLFIQMLREGTLFNEFTISSVLCECAF 169

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
              I    +  ++ +   SV  +    T ++ +  +   +++A  +  +MP E  A +W 
Sbjct: 170 KCAILECMQ-LHAFSIKVSVDSNCFVGTALLHVYAKCSSIKDASKMFESMP-ETNAVTWS 227

Query: 509 ALLGASRIHGNTELGEKAAEMVFK 532
           ++L     +G  E    AA ++F+
Sbjct: 228 SILAGYVQNGLHE----AALLLFR 247



 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 122/291 (41%), Gaps = 47/291 (16%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----Q 80
            A++  Y + +    A  +F+ MP+ + V+W+ +L GYV+N     A  LF        +
Sbjct: 196 TALLHVYAKCSSIKDASKMFESMPETNAVTWSSILAGYVQNGLHEAALLLFRDYQLMGFE 255

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN-----GLLAAYVHNGRIEEACR 135
           +D    ++ +   A      E ++V + +  K+    N      L+  Y   G I EA  
Sbjct: 256 QDAFLISSAVCACAGLATLIEGKQV-HAISCKSGFGSNIYVTSSLIDMYAKCGCIREAYI 314

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +F  +    ++ WN ++ GF +      A  LF+KM                      Q 
Sbjct: 315 VFQGEELRSIVLWNAMISGFGRHACALEAMILFEKM----------------------QQ 352

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE-----ISYNAMVAGYVQ 250
           + LF      D  T+ ++++     G+ ++   +FD M +++      + Y+ MV    +
Sbjct: 353 RGLF-----PDDVTYVSVLNACSHMGLHEQGHKYFDLMVREHNLRPSVLHYSCMVDILGR 407

Query: 251 SNKMDMARELFEAMPSRNVSS-WNTMITGYGQNGDI----AQARKLFDMMP 296
           +  +  A +L E MP    SS W +++     +G+I      A+ LF+M P
Sbjct: 408 AGLVHKAYDLIERMPFSATSSIWGSLLASCRIHGNIEFAEIAAKHLFEMEP 458


>Medtr7g079860.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:30342642-30345393 | 20130731
          Length = 755

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/697 (33%), Positives = 392/697 (56%), Gaps = 33/697 (4%)

Query: 44  FDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQN-GYADEA 102
           F K   + L S N +LT YV++  L  A +LFD +  K+  +W  ++SG+A+  G ++  
Sbjct: 59  FKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELV 118

Query: 103 REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW--------ELISWNCLMGG 154
             +F +M    A      L++ +     E   +       W        +++  N ++  
Sbjct: 119 FSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDL 178

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMV 214
           ++K K    A   F+ M  +DVVSWN MI  Y ++GD+ ++  +F   P++DV +W  ++
Sbjct: 179 YLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTII 238

Query: 215 SGYVQNGM----LDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS 270
            G +Q G     L++         + + ++++  +      + +++ R+L   + +  ++
Sbjct: 239 DGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLN 298

Query: 271 S----WNTMITGYGQNGDIAQARKLFDMMP----------------QRDCVSWAAIISGY 310
           S     ++++  YG+ G + +A  +   +P                +   VSW++++SGY
Sbjct: 299 SDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGY 358

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
              G YE+ +  F  +  +   ++  T +  +S CA+   LE GKQIH  + K G     
Sbjct: 359 VWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDA 418

Query: 371 FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
           +VG++L+ MY K GS+ +A  +FE I+E +VV W +MI+G A HG GK+A+ +FE M  +
Sbjct: 419 YVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNL 478

Query: 431 GVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           G+ P+E+T VGVL+ACSH GLI+ G  YF  M   Y + P  +HYT M++L GRAG L E
Sbjct: 479 GIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIE 538

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAA 550
           A++ +         + W + L + R+H N  +G+  +EM+ +  P +   Y+LLSN+ ++
Sbjct: 539 AKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSS 598

Query: 551 SGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLK 610
           + +W +A  +RS M   GV+K  G SWV+++++IH FTVGD  HP+   IY++L+ L  +
Sbjct: 599 NHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGR 658

Query: 611 MRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDC 670
           ++  GY    KLV+ DVEEE+ E ++ +HSEKLA+ F I+      PIR++KNLR+C DC
Sbjct: 659 LKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDC 718

Query: 671 HNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           HN  K+ S+++ R II+RD+HRFHHF +  CSCG+YW
Sbjct: 719 HNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 170/413 (41%), Gaps = 75/413 (18%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  YL+   F  A   F+ M ++D+VSWN+M+  Y+R   +  +  +F + P KDVV
Sbjct: 173 NSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVV 232

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMP------------------------------HKNA 114
           SWN ++ G  Q GY   A E  Y M                               H   
Sbjct: 233 SWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRV 292

Query: 115 ISW---------NGLLAAYVHNGRIEEACRL-------FDSKSDW---------ELISWN 149
           +++         + L+  Y   GR+++A  +       F  K ++          ++SW+
Sbjct: 293 LTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWS 352

Query: 150 CLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGDMSQAKNLF----DQ 201
            ++ G+V         K F  M     V D+ +  T+IS  A  G +   K +       
Sbjct: 353 SMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKI 412

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELF 261
               D +  ++++  Y ++G LD+A   F+Q+ + N + + +M++G     +   A  LF
Sbjct: 413 GLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLF 472

Query: 262 EAMPS----RNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-----DCVSWAAIISGYAQ 312
           E M +     N  ++  ++      G I +  + F MM        +   + ++++ Y +
Sbjct: 473 EGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGR 532

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
            GH  EA N   E   +  S   S +   LS+C       +GK +   ++++ 
Sbjct: 533 AGHLIEAKNFIFE---NSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSA 582


>Medtr7g092100.1 | RNAediting factor 1 | HC | chr7:36467361-36465331
           | 20130731
          Length = 596

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/538 (41%), Positives = 337/538 (62%), Gaps = 14/538 (2%)

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM-----PQK 236
           +I+ Y++      +  +F  SPH+   TW++++S + QN +   +  +F  M     P  
Sbjct: 61  LINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPD 120

Query: 237 NEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           + I  +A  +  + S+ + +A+ L     +     ++   +++I  Y + GDI  A  +F
Sbjct: 121 DHIFPSATKSCGILSS-LPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVF 179

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMF--IEIKRDGESLNRSTFSCALSTCADIAA 350
           D MP R+ VSW+ +I GY Q G  +E+L +F    ++ + E +N  T S  L  C     
Sbjct: 180 DEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTL 239

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
           L++G+ IHG   KT +++ CFV ++L+ +Y KCG + EA DVFE +  +++  WN M+  
Sbjct: 240 LQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIA 299

Query: 411 YARHGFGKQALMVFESMKTIG-VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
            A+H    +   +F+ MK++G +K + IT + VL ACSHAGL+++G +Y++ + KDY + 
Sbjct: 300 CAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKG-KYYFELMKDYGIE 358

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
           P ++HY+ M+DLLGRAG+L +A  L+  MP EP  + WGALL   R+HGNT+L    A+ 
Sbjct: 359 PGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADR 418

Query: 530 VFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTV 589
           V ++   +SG++V+LSN YAA+GRW +A   R  MRD G++K TG SWVE  N+IH F  
Sbjct: 419 VSELGSVSSGLHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAA 478

Query: 590 GDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI 649
           GD  H +   IY  L+EL  +M + GYV+ T  VL +V+ EEK   ++YHSE+LA+AFG 
Sbjct: 479 GDRSHAKSVEIYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGF 538

Query: 650 LTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +T P G+PIRV+KNLRVC DCH AIK ISK  GR+II+RD++RFH F +G C+CGDYW
Sbjct: 539 ITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 167/365 (45%), Gaps = 24/365 (6%)

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF---------DS 139
           +++ Y++      + ++F+  PHK+A +W+ +++++  N     +   F           
Sbjct: 61  LINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPD 120

Query: 140 KSDWELISWNC-LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
              +   + +C ++      KML     L    H+ D+   +++I  YA+ GD+  A N+
Sbjct: 121 DHIFPSATKSCGILSSLPVAKMLHCF-ALKTAYHL-DIFVGSSVIDMYAKCGDICYAHNV 178

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK------NEISYNAMVAGYVQSN 252
           FD+ P+++V +W+ ++ GYVQ G  DE+   F +   +      N+ + ++++     S 
Sbjct: 179 FDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGST 238

Query: 253 KMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
            + M R +    F+     +    +++I+ Y + G + +A  +F+ +  R+   W A++ 
Sbjct: 239 LLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLI 298

Query: 309 GYAQTGHYEEALNMFIEIKR-DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE 367
             AQ  H ++   +F ++K   G   N  TF C L  C+    +E GK     +   G E
Sbjct: 299 ACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIE 358

Query: 368 TGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS-WNTMIAGYARHGFGKQALMVFES 426
            G    + ++ +  + G + +A  + E +  +   S W  ++ G   HG  K A  V + 
Sbjct: 359 PGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADR 418

Query: 427 MKTIG 431
           +  +G
Sbjct: 419 VSELG 423



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 151/330 (45%), Gaps = 28/330 (8%)

Query: 8   SALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVSWNVMLTG 61
           S+L++F+  P +S+ +++++IS + +N    L+ + F  M      P   +        G
Sbjct: 73  SSLQIFHDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCG 132

Query: 62  YVRNRRLGDARRLF--DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
            + +  +      F   +    D+   ++++  YA+ G    A  VF +MP++N +SW+G
Sbjct: 133 ILSSLPVAKMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSG 192

Query: 120 LLAAYVHNGRIEEACRLF---------DSKSDWELISWNCLMGGFVKRKMLGAARKL-FD 169
           L+  YV  G  +E+ RLF         +  +D+ L S   + GG    +M      L F 
Sbjct: 193 LIYGYVQLGEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFK 252

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
                     +++IS Y++ G + +A ++F++   +++  W AM+    Q+   D+    
Sbjct: 253 TSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFEL 312

Query: 230 FDQMP-----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYG 280
           FD+M      + N I++  ++     +  ++  +  FE M    +      ++TM+   G
Sbjct: 313 FDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFELMKDYGIEPGTQHYSTMVDLLG 372

Query: 281 QNGDIAQARKLFDMMPQRDCVS-WAAIISG 309
           + G +  A KL + MP     S W A+++G
Sbjct: 373 RAGKLNDAVKLIEEMPMEPTESVWGALLTG 402



 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 25/215 (11%)

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
           +L  G Q+H  ++K G +T   + + L+  Y K      +  +F     K   +W+++I+
Sbjct: 35  SLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVIS 94

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDE------ITMVGVLSACSHAGLIDRGTEYFYSMN 463
            +A++     +L  F  M   GV PD+          G+LS+   A ++     + +++ 
Sbjct: 95  SFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKML-----HCFALK 149

Query: 464 KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
             Y +       + +ID+  + G +  A ++   MP+     SW  L     I+G  +LG
Sbjct: 150 TAYHLDIFVG--SSVIDMYAKCGDICYAHNVFDEMPYR-NVVSWSGL-----IYGYVQLG 201

Query: 524 EKAAEM-VFK---MEPHNSGM--YVLLSNLYAASG 552
           E    + +FK   +E  N G+  + L S L    G
Sbjct: 202 EDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGG 236


>Medtr7g037430.1 | pentatricopeptide (PPR) repeat protein | LC |
           chr7:13795126-13792268 | 20130731
          Length = 952

 Score =  443 bits (1139), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/773 (33%), Positives = 401/773 (51%), Gaps = 90/773 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR----NRRLGDARRLFDSMPQ 80
           +A ++ Y +      A+ +FD MP RD+V+WN + + YV      + L   R +     +
Sbjct: 180 SAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVK 239

Query: 81  KDVVSWNAMLS----------GYAQNGYA-------------------------DEAREV 105
            D V+ + +LS          G A +G+A                          EA+ V
Sbjct: 240 PDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAV 299

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKML 161
           F  MPH+N I+WN L + YV+ G  ++   +F          + ++ + ++    + K L
Sbjct: 300 FDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDL 359

Query: 162 GAARKL--FDKMH--VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY 217
            + + +  F   H  V DV     +++ YA    + +A+ +FD  PH++V TW ++ S Y
Sbjct: 360 KSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCY 419

Query: 218 VQNGMLDEARTFFDQM------PQ---------------------------------KNE 238
           V  G   +    F +M      P                                  ++ 
Sbjct: 420 VNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDV 479

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM--- 295
              NA+++ Y +   +  A+ +F+ +P R V+SWN ++T Y  N +  +   +F  M   
Sbjct: 480 FVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRD 539

Query: 296 -PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
             + D ++W+ +I G  +    EEA+ +F +++  G   + +T    L  C+    L +G
Sbjct: 540 EVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
           K+IH  V +   +      NAL+ MY KCG +  + +VF+ +  KDV SWNTMI     H
Sbjct: 600 KEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMH 659

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKH 474
           G GK+AL +FE M    VKPD  T   VLSACSH+ L++ G + F SM++D+ V P ++H
Sbjct: 660 GNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEH 719

Query: 475 YTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
           YTC++D+  RAG LEEA   ++ MP EP A +W A L   R++ N EL + +A+ +F+++
Sbjct: 720 YTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEID 779

Query: 535 PHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFH 594
           P+ S  YV L N+   +  W++A  +R  M++ G+ K  G SW  V N++H F  GD  +
Sbjct: 780 PNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSN 839

Query: 595 PEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPA 654
            E D+IY FL+EL  K++  GY   T  VLHD+++EEK   L  HSEKLAVAFGIL +  
Sbjct: 840 MESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNG 899

Query: 655 GRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
              IRV KNLR+C DCHNAIK++S +VG  I++RDS RFHHF  G CSC D+W
Sbjct: 900 QSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 223/486 (45%), Gaps = 43/486 (8%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+   N  +  Y + + +  ARR+FD +  +DVV+WN++ + Y   G+  +   VF +M 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM- 132

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
             N +  N L  + +  G  +    L D KS  E+        GFV R  +         
Sbjct: 133 GLNKVKANPLTVSSILPGCSD----LQDLKSGKEI-------HGFVVRHGM--------- 172

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
             V DV   +  ++ YA+   + +A+ +FD  PH+DV TW ++ S YV  G   +    F
Sbjct: 173 --VEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVF 230

Query: 231 DQM------PQKNEISYNAMVAGYVQSNKMDMARELFEAMPS--RNVSSWNTMITGYGQN 282
            +M      P    +S        +Q  K   A   F        NV   N ++  Y   
Sbjct: 231 REMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESC 290

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
             + +A+ +FD+MP R+ ++W ++ S Y   G  ++ LN+F E+  +G   +    S  L
Sbjct: 291 LCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSIL 350

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
             C+ +  L+ GK IHG  VK G     FV  AL+ +Y  C  + EA  VF+ +  ++VV
Sbjct: 351 PACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVV 410

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS-----HAGLIDRGTE 457
           +WN++ + Y   GF ++ L VF  M   GVKPD +TM+ +L ACS      +G +  G  
Sbjct: 411 TWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFA 470

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
             + M +D  V  +      ++ L  +   + EAQ +   +P     ASW  +L A   +
Sbjct: 471 VRHGMVEDVFVCNA------LLSLYAKCVCVREAQVVFDLIPHR-EVASWNGILTAYFTN 523

Query: 518 GNTELG 523
              E G
Sbjct: 524 KEYEKG 529



 Score =  184 bits (466), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 149/621 (23%), Positives = 272/621 (43%), Gaps = 110/621 (17%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR----------------NRRL 68
           NA I  Y +      AR +FD +  RD+V+WN +   YV                 N+  
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 69  GDARRLFDSMP-----------------------QKDVVSWNAMLSGYAQNGYADEAREV 105
            +   +   +P                        +DV   +A ++ YA+     EA+ V
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS------KSDWELISWNCLMGGFVKRK 159
           F  MPH++ ++WN L + YV+ G  ++   +F        K D   +S  C++      +
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVS--CILSACSDLQ 256

Query: 160 MLGAARKL--FDKMH--VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
            L + + +  F   H  V +V   N +++ Y     + +A+ +FD  PH++V TW ++ S
Sbjct: 257 DLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLAS 316

Query: 216 GYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSR 267
            YV  G   +    F +M     + + ++ ++++    Q   +   + +     +     
Sbjct: 317 CYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVE 376

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           +V     ++  Y     + +A+ +FD+MP R+ V+W ++ S Y   G  ++ LN+F E+ 
Sbjct: 377 DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
            +G   +  T    L  C+D+  L+ GK IHG  V+ G     FV NALL +Y KC  + 
Sbjct: 437 LNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVR 496

Query: 388 EANDVFEGIEEKDVVSWN-----------------------------------TMIAGYA 412
           EA  VF+ I  ++V SWN                                    +I G  
Sbjct: 497 EAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCV 556

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE---YFYSMNKDYSVT 469
           ++   ++A+ +F  M+T+G KPDE T+  +L ACS +  +  G E   Y +   KD+ + 
Sbjct: 557 KNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLA 616

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
            ++     ++D+  + G L  ++++   MP +    SW  ++ A+ +HGN   G++A  +
Sbjct: 617 RTNA----LVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGN---GKEALSL 668

Query: 530 VFKM-----EPHNSGMYVLLS 545
             KM     +P ++    +LS
Sbjct: 669 FEKMLLSMVKPDSATFTCVLS 689



 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 12/202 (5%)

Query: 314 GHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
           G   EA+ ++   +  G   ++  F      CA        KQ H    + G  +   +G
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
           NA +  Y KC  +  A  VF+ +  +DVV+WN++ A Y   GF +Q L VF  M    VK
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYF-----YSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
            + +T+  +L  CS    +  G E       + M +D  V+ +       ++   +   +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSA------FVNFYAKCLCV 192

Query: 489 EEAQDLMRNMPFEPPAASWGAL 510
            EAQ +   MP      +W +L
Sbjct: 193 REAQTVFDLMPHR-DVVTWNSL 213



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 22/226 (9%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFS----LARDL----FDKMPQRDL 52
           ++N   + A+ +F  M           I   LR    S    + +++    F      DL
Sbjct: 556 VKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDL 615

Query: 53  VSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF----YQ 108
              N ++  Y +   L  +R +FD MP KDV SWN M+     +G   EA  +F      
Sbjct: 616 ARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLS 675

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELIS-----WNCLMGGFVKRKMLGA 163
           M   ++ ++  +L+A  H+  +EE  ++F+S S   L+      + C++  + +   L  
Sbjct: 676 MVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEE 735

Query: 164 ARKLFDKMHVRDV-VSWNTMISG--YAQDGDMSQ--AKNLFDQSPH 204
           A     +M +    ++W   ++G    ++ ++++  AK LF+  P+
Sbjct: 736 AYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPN 781


>Medtr1g059720.1 | organelle transcript processing protein, putative
           | HC | chr1:25973337-25971195 | 20130731
          Length = 574

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/542 (40%), Positives = 325/542 (59%), Gaps = 10/542 (1%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           +++  N ++  Y Q   ++ A  LFD+ P +D  TW+ MV G+ + G  +     F ++ 
Sbjct: 34  NLIVANKLLHFYVQHKAINDAYYLFDEMPTRDPTTWSIMVGGFSKLGDYNNCYATFREIL 93

Query: 235 QKNEISYNAMVAGYVQSNK----MDMARELFEAMPSRNVS----SWNTMITGYGQNGDIA 286
           + N    N  +   +++ +    + M R + + +    +        T++  Y +   I 
Sbjct: 94  RCNITPDNYTLPFVIRACRDRKDIQMGRMIHDVVLKYGLVLDHFVCATLVDMYAKCAVIE 153

Query: 287 QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCA 346
            ARKLFD+M  +D V+W  +I  YA    YE +L +F  ++ +G   ++      ++ CA
Sbjct: 154 DARKLFDVMVSKDLVTWTVMIGCYADYDAYE-SLVLFDRLREEGFVSDKVAMVTVVNACA 212

Query: 347 DIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNT 406
            + A+   + ++  +   G      +G A++ MY KCG +  A +VF+ ++EK+V+SW+ 
Sbjct: 213 KLGAMHRARFVNEYICGNGLSLDVILGTAMIDMYAKCGCVDSAREVFDRMKEKNVISWSA 272

Query: 407 MIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY 466
           MIA Y  HG GK+AL +F  M + G+ P+ IT V +L ACSH+GL D G  +F SM +DY
Sbjct: 273 MIAAYGYHGKGKEALDLFHMMLSCGISPNRITFVSLLYACSHSGLTDEGLHFFDSMWRDY 332

Query: 467 SVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
            V P  KHYTC++DLLGRAGRL+EA  L+  M  E     W ALLGA R+HGN EL  K 
Sbjct: 333 GVRPDVKHYTCVVDLLGRAGRLDEALKLIETMNVEKDERLWSALLGACRVHGNMELAGKV 392

Query: 527 AEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHK 586
           AE + +++P N G+YVLLSN+YA +G+W   G  R  M    ++KV G++W+EV NK ++
Sbjct: 393 AESLLELQPKNPGIYVLLSNIYAKAGKWEKVGEFRDLMTQRKLKKVPGWTWIEVDNKTYQ 452

Query: 587 FTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVA 646
           F+VGD  HP+   IY  L  +  K+   GYV  T+ VL DVEEE K+ ML  HSEKLA+A
Sbjct: 453 FSVGDRSHPQSKEIYEMLTSVIKKLEMVGYVPDTEFVLQDVEEEVKKEMLYTHSEKLAIA 512

Query: 647 FGILTIP-AGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGD 705
           FG++ IP  G PIR+ KNLRVC DCH   K +S ++ R II+RD++RFHHFNEG CSCGD
Sbjct: 513 FGLIAIPNKGDPIRISKNLRVCGDCHTFCKMVSDVMKRSIIVRDANRFHHFNEGACSCGD 572

Query: 706 YW 707
           YW
Sbjct: 573 YW 574



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 154/316 (48%), Gaps = 28/316 (8%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           +L+  N +L  YV+++ + DA  LFD MP +D  +W+ M+ G+++ G  +     F ++ 
Sbjct: 34  NLIVANKLLHFYVQHKAINDAYYLFDEMPTRDPTTWSIMVGGFSKLGDYNNCYATFREIL 93

Query: 111 HKNAISWNGLLAAYVHNGR----IEEACRLFDSKSDWELI--SWNC--LMGGFVKRKMLG 162
             N    N  L   +   R    I+    + D    + L+   + C  L+  + K  ++ 
Sbjct: 94  RCNITPDNYTLPFVIRACRDRKDIQMGRMIHDVVLKYGLVLDHFVCATLVDMYAKCAVIE 153

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYV 218
            ARKLFD M  +D+V+W  MI  YA D D  ++  LFD+   +    D      +V+   
Sbjct: 154 DARKLFDVMVSKDLVTWTVMIGCYA-DYDAYESLVLFDRLREEGFVSDKVAMVTVVNACA 212

Query: 219 QNGMLDEARTFFDQMPQKNEISYN-----AMVAGYVQSNKMDMARELFEAMPSRNVSSWN 273
           + G +  AR F ++    N +S +     AM+  Y +   +D ARE+F+ M  +NV SW+
Sbjct: 213 KLGAMHRAR-FVNEYICGNGLSLDVILGTAMIDMYAKCGCVDSAREVFDRMKEKNVISWS 271

Query: 274 TMITGYGQNGDIAQARKLFDMM------PQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
            MI  YG +G   +A  LF MM      P R  +++ +++   + +G  +E L+ F  + 
Sbjct: 272 AMIAAYGYHGKGKEALDLFHMMLSCGISPNR--ITFVSLLYACSHSGLTDEGLHFFDSMW 329

Query: 328 RD-GESLNRSTFSCAL 342
           RD G   +   ++C +
Sbjct: 330 RDYGVRPDVKHYTCVV 345



 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 183/417 (43%), Gaps = 49/417 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N ++  Y+++   + A  LFD+MP RD  +W++M+ G+    +LGD    + +   ++++
Sbjct: 39  NKLLHFYVQHKAINDAYYLFDEMPTRDPTTWSIMVGGF---SKLGDYNNCYATF--REIL 93

Query: 85  SWNAMLSGYAQNGYADEARE----VFYQMPHKNAISWN---------GLLAAYVHNGRIE 131
             N     Y         R+       +M H   + +           L+  Y     IE
Sbjct: 94  RCNITPDNYTLPFVIRACRDRKDIQMGRMIHDVVLKYGLVLDHFVCATLVDMYAKCAVIE 153

Query: 132 EACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYA 187
           +A +LFD     +L++W  ++G +        +  LFD++     V D V+  T+++  A
Sbjct: 154 DARKLFDVMVSKDLVTWTVMIGCYADYDAY-ESLVLFDRLREEGFVSDKVAMVTVVNACA 212

Query: 188 QDGDMSQAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNA 243
           + G M +A+ + +         DV   TAM+  Y + G +D AR  FD+M +KN IS++A
Sbjct: 213 KLGAMHRARFVNEYICGNGLSLDVILGTAMIDMYAKCGCVDSAREVFDRMKEKNVISWSA 272

Query: 244 MVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGYGQNGDIAQARKLFDMM---- 295
           M+A Y    K   A +LF  M S  +S    ++ +++     +G   +    FD M    
Sbjct: 273 MIAAYGYHGKGKEALDLFHMMLSCGISPNRITFVSLLYACSHSGLTDEGLHFFDSMWRDY 332

Query: 296 -PQRDCVSWAAIISGYAQTGHYEEALNMF--IEIKRDGESLNRSTFSCALSTCADIAALE 352
             + D   +  ++    + G  +EAL +   + +++D        +S  L  C     +E
Sbjct: 333 GVRPDVKHYTCVVDLLGRAGRLDEALKLIETMNVEKD-----ERLWSALLGACRVHGNME 387

Query: 353 LGKQIHGQVVKTGYET-GCFVGNALLGMYFKCG---SIGEANDVFEGIEEKDVVSWN 405
           L  ++   +++   +  G +V   L  +Y K G    +GE  D+    + K V  W 
Sbjct: 388 LAGKVAESLLELQPKNPGIYV--LLSNIYAKAGKWEKVGEFRDLMTQRKLKKVPGWT 442



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 11/182 (6%)

Query: 336 STFSCA--LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           +T SC   L TC +I  +   +Q+H   +  G      V N LL  Y +  +I +A  +F
Sbjct: 2   ATESCLRLLYTCRNIFHI---RQVHANALINGTFNNLIVANKLLHFYVQHKAINDAYYLF 58

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
           + +  +D  +W+ M+ G+++ G        F  +    + PD  T+  V+ AC     I 
Sbjct: 59  DEMPTRDPTTWSIMVGGFSKLGDYNNCYATFREILRCNITPDNYTLPFVIRACRDRKDIQ 118

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTC--MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
            G    + +   Y +     H+ C  ++D+  +   +E+A+ L   M       +W  ++
Sbjct: 119 MG-RMIHDVVLKYGLVLD--HFVCATLVDMYAKCAVIEDARKLFDVM-VSKDLVTWTVMI 174

Query: 512 GA 513
           G 
Sbjct: 175 GC 176


>Medtr6g075280.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:27881892-27885186 | 20130731
          Length = 684

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 346/599 (57%), Gaps = 47/599 (7%)

Query: 155 FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTW 210
           ++K   +  A+KLFD M  RDV+ W+ MI+GY++ G++ +AK +F     +    ++ +W
Sbjct: 8   YLKCNRIDDAQKLFDGMCDRDVIVWSAMIAGYSRLGNVDRAKEVFCEMRKEGVEPNLVSW 67

Query: 211 TAMVSGYVQNGMLDEARTFFDQM------PQKNEIS-------------YNAMVAGYV-- 249
             M++G+   G+ DEA   F +M      P  + +S                 V GYV  
Sbjct: 68  NGMIAGFGNVGLYDEAVRLFHEMVSEGFLPDGSTVSCVLPGVGNLEDVLMGKQVHGYVIK 127

Query: 250 ---QSNK------MDM---------ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
              +S+K      +DM            +F+ +    + S N  +TG  +NG +  A  +
Sbjct: 128 LGLESDKYVVSALLDMYGRCGCAPEMSRVFDEIDQTEIGSLNAFLTGLSRNGLVDTALDV 187

Query: 292 FDMMP----QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
           F        + + V+W +II+   Q G   EAL +F +++ DG   N  T    +  C +
Sbjct: 188 FKKFKAGELELNVVTWTSIIASCVQNGKDMEALELFRDMQADGVEPNAVTIPSLIPACGN 247

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
           I+AL  GK+IH   ++ G     +VG+AL+ MY  CG I  + + F+ +  +++VSWN++
Sbjct: 248 ISALTHGKEIHCFSLRKGIFDDVYVGSALIDMYANCGRIRLSQNCFDEMPFRNLVSWNSI 307

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYS 467
           ++GYA HG  K+ + +F  M   G KPD IT   VLSAC+  GL + G  YF SM+K+Y 
Sbjct: 308 MSGYAMHGKAKETIEMFHMMLQSGQKPDSITFTSVLSACTQNGLTEEGWHYFNSMSKEYD 367

Query: 468 VTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAA 527
           V P  +HY CM+ LL R G+LEEA  +++ MPFEP A  WGALL + R+H N  LGE AA
Sbjct: 368 VKPKMEHYACMVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHHNLSLGEIAA 427

Query: 528 EMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKF 587
           E +F +EP N G Y+LLSN+YA+ G W +   +R  M+  G+QK  G SW+E+ +++H  
Sbjct: 428 EKLFVLEPDNPGNYILLSNIYASKGMWDEENRVRDMMKSKGLQKNPGCSWIEIGHRVHTL 487

Query: 588 TVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 647
             GD  HP+   I    E+L ++++  G +  TK VL DVEE++KE +L  HSEKLAV  
Sbjct: 488 VSGDKSHPQMKEILEKSEKLSIEIKESGCLPMTKSVLQDVEEQDKEQILCGHSEKLAVVL 547

Query: 648 GILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDY 706
           G++    G+P++VIKNLR+C+DCH  IK IS++ GR I +RD++RFHHF EG+CSC D+
Sbjct: 548 GLINTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIFVRDTNRFHHFKEGVCSCADF 606



 Score =  149 bits (376), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 165/320 (51%), Gaps = 43/320 (13%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR--- 298
           +++V  Y++ N++D A++LF+ M  R+V  W+ MI GY + G++ +A+++F  M +    
Sbjct: 2   SSLVHMYLKCNRIDDAQKLFDGMCDRDVIVWSAMIAGYSRLGNVDRAKEVFCEMRKEGVE 61

Query: 299 -DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQI 357
            + VSW  +I+G+   G Y+EA+ +F E+  +G   + ST SC L    ++  + +GKQ+
Sbjct: 62  PNLVSWNGMIAGFGNVGLYDEAVRLFHEMVSEGFLPDGSTVSCVLPGVGNLEDVLMGKQV 121

Query: 358 HGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-------------------- 397
           HG V+K G E+  +V +ALL MY +CG   E + VF+ I+                    
Sbjct: 122 HGYVIKLGLESDKYVVSALLDMYGRCGCAPEMSRVFDEIDQTEIGSLNAFLTGLSRNGLV 181

Query: 398 ---------------EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
                          E +VV+W ++IA   ++G   +AL +F  M+  GV+P+ +T+  +
Sbjct: 182 DTALDVFKKFKAGELELNVVTWTSIIASCVQNGKDMEALELFRDMQADGVEPNAVTIPSL 241

Query: 443 LSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           + AC +   +  G E + +S+ K   +       + +ID+    GR+  +Q+    MPF 
Sbjct: 242 IPACGNISALTHGKEIHCFSLRK--GIFDDVYVGSALIDMYANCGRIRLSQNCFDEMPFR 299

Query: 502 PPAASWGALLGASRIHGNTE 521
               SW +++    +HG  +
Sbjct: 300 -NLVSWNSIMSGYAMHGKAK 318



 Score =  130 bits (327), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 163/353 (46%), Gaps = 65/353 (18%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISW 117
           Y++  R+ DA++LFD M  +DV+ W+AM++GY++ G  D A+EVF +M  +    N +SW
Sbjct: 8   YLKCNRIDDAQKLFDGMCDRDVIVWSAMIAGYSRLGNVDRAKEVFCEMRKEGVEPNLVSW 67

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
           NG++A + + G  +EA RLF      E++S   L  G     +L     L D +  + V 
Sbjct: 68  NGMIAGFGNVGLYDEAVRLFH-----EMVSEGFLPDGSTVSCVLPGVGNLEDVLMGKQVH 122

Query: 178 SW-------------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
            +             + ++  Y + G   +   +FD+    ++ +  A ++G  +NG++D
Sbjct: 123 GYVIKLGLESDKYVVSALLDMYGRCGCAPEMSRVFDEIDQTEIGSLNAFLTGLSRNGLVD 182

Query: 225 EARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAM------------PSR- 267
            A   F +      + N +++ +++A  VQ+ K   A ELF  M            PS  
Sbjct: 183 TALDVFKKFKAGELELNVVTWTSIIASCVQNGKDMEALELFRDMQADGVEPNAVTIPSLI 242

Query: 268 ----NVSSW----------------------NTMITGYGQNGDIAQARKLFDMMPQRDCV 301
               N+S+                       + +I  Y   G I  ++  FD MP R+ V
Sbjct: 243 PACGNISALTHGKEIHCFSLRKGIFDDVYVGSALIDMYANCGRIRLSQNCFDEMPFRNLV 302

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
           SW +I+SGYA  G  +E + MF  + + G+  +  TF+  LS C      E G
Sbjct: 303 SWNSIMSGYAMHGKAKETIEMFHMMLQSGQKPDSITFTSVLSACTQNGLTEEG 355



 Score = 94.7 bits (234), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 172/415 (41%), Gaps = 71/415 (17%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNVMLTGY 62
           D A ++F+ M  R  + ++AMI+GY R      A+++F +M +     +LVSWN M+ G+
Sbjct: 15  DDAQKLFDGMCDRDVIVWSAMIAGYSRLGNVDRAKEVFCEMRKEGVEPNLVSWNGMIAGF 74

Query: 63  VRNRRLGDARRLFDSM------PQKDVVSW------------------------------ 86
                  +A RLF  M      P    VS                               
Sbjct: 75  GNVGLYDEAVRLFHEMVSEGFLPDGSTVSCVLPGVGNLEDVLMGKQVHGYVIKLGLESDK 134

Query: 87  ---NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
              +A+L  Y + G A E   VF ++      S N  L     NG ++ A  +F      
Sbjct: 135 YVVSALLDMYGRCGCAPEMSRVFDEIDQTEIGSLNAFLTGLSRNGLVDTALDVFKKFKAG 194

Query: 144 EL----ISWNCLMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGDMSQA 195
           EL    ++W  ++   V+      A +LF  M    V    V+  ++I        ++  
Sbjct: 195 ELELNVVTWTSIIASCVQNGKDMEALELFRDMQADGVEPNAVTIPSLIPACGNISALTHG 254

Query: 196 KNL----FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS 251
           K +      +    DV+  +A++  Y   G +  ++  FD+MP +N +S+N++++GY   
Sbjct: 255 KEIHCFSLRKGIFDDVYVGSALIDMYANCGRIRLSQNCFDEMPFRNLVSWNSIMSGYAMH 314

Query: 252 NKMDMARELFEAM----PSRNVSSWNTMITGYGQNGDIAQA-------RKLFDMMPQRDC 300
            K     E+F  M       +  ++ ++++   QNG   +         K +D+ P+ + 
Sbjct: 315 GKAKETIEMFHMMLQSGQKPDSITFTSVLSACTQNGLTEEGWHYFNSMSKEYDVKPKME- 373

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
             +A +++  ++ G  EEA ++  E+  + ++     +   LS+C     L LG+
Sbjct: 374 -HYACMVTLLSRVGKLEEAYSIIKEMPFEPDA---CVWGALLSSCRVHHNLSLGE 424



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 54/341 (15%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL----VSWNV 57
           R G      RVF+ + +    S NA ++G  RN     A D+F K    +L    V+W  
Sbjct: 146 RCGCAPEMSRVFDEIDQTEIGSLNAFLTGLSRNGLVDTALDVFKKFKAGELELNVVTWTS 205

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNA-----MLSGYAQNGYADEAREVFYQMPHK 112
           ++   V+N +  +A  LF  M Q D V  NA     ++            +E+      K
Sbjct: 206 IIASCVQNGKDMEALELFRDM-QADGVEPNAVTIPSLIPACGNISALTHGKEIHCFSLRK 264

Query: 113 ----NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
               +    + L+  Y + GRI  +   FD      L+SWN +M G+    M G A++  
Sbjct: 265 GIFDDVYVGSALIDMYANCGRIRLSQNCFDEMPFRNLVSWNSIMSGYA---MHGKAKETI 321

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
           +  H+              Q G          Q P  D  T+T+++S   QNG+ +E   
Sbjct: 322 EMFHM------------MLQSG----------QKP--DSITFTSVLSACTQNGLTEEGWH 357

Query: 229 FFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQN 282
           +F+ M ++ ++      Y  MV    +  K++ A  + + MP   +   W  +++    +
Sbjct: 358 YFNSMSKEYDVKPKMEHYACMVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVH 417

Query: 283 -----GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
                G+IA A KLF + P     ++  + + YA  G ++E
Sbjct: 418 HNLSLGEIA-AEKLFVLEPDNP-GNYILLSNIYASKGMWDE 456



 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 20/214 (9%)

Query: 37  FSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQN 96
           FSL + +FD     D+   + ++  Y    R+  ++  FD MP +++VSWN+++SGYA +
Sbjct: 260 FSLRKGIFD-----DVYVGSALIDMYANCGRIRLSQNCFDEMPFRNLVSWNSIMSGYAMH 314

Query: 97  GYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW-----ELIS 147
           G A E  E+F+ M       ++I++  +L+A   NG  EE    F+S S       ++  
Sbjct: 315 GKAKETIEMFHMMLQSGQKPDSITFTSVLSACTQNGLTEEGWHYFNSMSKEYDVKPKMEH 374

Query: 148 WNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMS----QAKNLFDQS 202
           + C++    +   L  A  +  +M    D   W  ++S      ++S     A+ LF   
Sbjct: 375 YACMVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHHNLSLGEIAAEKLFVLE 434

Query: 203 PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
           P  +   +  + + Y   GM DE     D M  K
Sbjct: 435 P-DNPGNYILLSNIYASKGMWDEENRVRDMMKSK 467


>Medtr5g006570.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:988953-991582 | 20130731
          Length = 838

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/677 (35%), Positives = 390/677 (57%), Gaps = 22/677 (3%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +DL   N ++  Y    ++   R++FD M +++VVSW ++++GY+    A EA  +F++M
Sbjct: 165 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 224

Query: 110 PH----KNAISWNGLLAAYVHNGRIE---EACRLFDS---KSDWELISWNCLMGGFVKRK 159
                  N ++    ++A      +E   + C L      KS+  ++  N L+  ++K  
Sbjct: 225 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVV--NALLDMYMKCG 282

Query: 160 MLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVS 215
            + A R++FD+   +++V +NT++S Y Q G   +   + D+   +    D  T  + ++
Sbjct: 283 DMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIA 342

Query: 216 GYVQNGMLD-----EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS 270
              Q G L       A  F + + + + IS NA++  Y++  K + A ++F++M ++ V 
Sbjct: 343 ACAQLGDLSVGKSSHAYVFRNGLERLDNIS-NAIIDMYMKCGKREAACKVFDSMSNKTVV 401

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +WN++I G  ++G++  A ++F  MP+ + VSW  +I    Q   +EEA+++  E++  G
Sbjct: 402 TWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQG 461

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
              +R T     S C  + AL+L K I+  + K        +G AL+ M+ +CG    A 
Sbjct: 462 IKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAM 521

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
            VFE +E++DV +W   I   A  G  K A+ +F+ M    VK D+   V +L+A SH G
Sbjct: 522 RVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGG 581

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
            +D+G + F++M K + V+P   HY CM+DLLGRAG LEEA DLM++MP +P    WG+ 
Sbjct: 582 YVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSF 641

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           L A R H N E    A E + ++ P   G++VLLSN+YA++G+W D   +R +M++ G Q
Sbjct: 642 LAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQ 701

Query: 571 KVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 630
           KV G S +EV   I +FT GD  H E  +I   L+E++ ++ + GYV  T  VL DV+E+
Sbjct: 702 KVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQ 761

Query: 631 EKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDS 690
           EKEH+L  HSEKLA+A+G++    G PIRV+KNLR+C DCH+  K +SK+ GR I +RD+
Sbjct: 762 EKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDN 821

Query: 691 HRFHHFNEGICSCGDYW 707
           +R+H F EG CSC D+W
Sbjct: 822 NRYHFFKEGFCSCRDFW 838



 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 224/513 (43%), Gaps = 63/513 (12%)

Query: 66  RRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI-----SWNGL 120
           + L + ++L  +M +K V + N +++   Q G  +                    + N L
Sbjct: 43  KTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTL 102

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD-----KMH--- 172
           +  Y  +G  +EA  ++       +I    +   F    +L A  K+       ++H   
Sbjct: 103 IRGYAASGLCKEAIFIYLHM----IIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVV 158

Query: 173 -----VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
                V+D+   N++I  YA  G +   + +FD+   ++V +WT++++GY    M  EA 
Sbjct: 159 VKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAV 218

Query: 228 TFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGY 279
             F +M     + N ++    ++   +   +++ +++   M    V S     N ++  Y
Sbjct: 219 CLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMY 278

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + GD+   R++FD    ++ V +  I+S Y Q G   E L +  E+ + G+  ++ T  
Sbjct: 279 MKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTML 338

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             ++ CA +  L +GK  H  V + G E    + NA++ MY KCG    A  VF+ +  K
Sbjct: 339 STIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNK 398

Query: 400 DVVSWNTMIAGYARHG--------FG-----------------------KQALMVFESMK 428
            VV+WN++IAG  R G        FG                       ++A+ +   M+
Sbjct: 399 TVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQ 458

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
             G+K D +TMVG+ SAC + G +D   ++ Y+  +   +    +  T ++D+  R G  
Sbjct: 459 NQGIKGDRVTMVGIASACGYLGALDLA-KWIYTYIEKNDIHIDMQLGTALVDMFSRCGDP 517

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
             A  +  NM  +   ++W A +    + GN +
Sbjct: 518 LNAMRVFENME-KRDVSAWTAAIRVKAVEGNAK 549



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 160/327 (48%), Gaps = 22/327 (6%)

Query: 18  RRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDS 77
           + +++  NA++  Y++       R++FD+   ++LV +N +++ YV++   G+   + D 
Sbjct: 265 KSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDE 324

Query: 78  MPQK----DVVSWNAMLSGYAQNGYADEARE----VFYQMPHKNAISWNGLLAAYVHNGR 129
           M QK    D V+  + ++  AQ G     +     VF     +     N ++  Y+  G+
Sbjct: 325 MLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGK 384

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
            E AC++FDS S+  +++WN L+ G V+   L  A ++F +M   ++VSWNTMI    Q 
Sbjct: 385 REAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQA 444

Query: 190 GDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN--- 242
               +A +L  +  +Q    D  T   + S     G LD A+  +  + +KN+I  +   
Sbjct: 445 SMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYI-EKNDIHIDMQL 503

Query: 243 --AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
             A+V  + +      A  +FE M  R+VS+W   I      G+   A +LFD M ++D 
Sbjct: 504 GTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDV 563

Query: 301 VS----WAAIISGYAQTGHYEEALNMF 323
            +    + A+++ ++  G+ ++   +F
Sbjct: 564 KADDFVFVALLTAFSHGGYVDQGRQLF 590



 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 166/342 (48%), Gaps = 30/342 (8%)

Query: 14  NTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARR 73
           N + R  ++S NA+I  Y++  +   A  +FD M  + +V+WN ++ G VR+  L  A R
Sbjct: 363 NGLERLDNIS-NAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALR 421

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGR 129
           +F  MP+ ++VSWN M+    Q    +EA ++  +M ++    + ++  G+ +A  + G 
Sbjct: 422 IFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGA 481

Query: 130 IEEACRLF------DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
           ++ A  ++      D   D +L     L+  F +      A ++F+ M  RDV +W   I
Sbjct: 482 LDLAKWIYTYIEKNDIHIDMQL--GTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAI 539

Query: 184 SGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
              A +G+   A  LFD+   QDV    F + A+++ +   G +D+ R  F  M + + +
Sbjct: 540 RVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGV 599

Query: 240 S-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQA----R 289
           S     Y  MV    ++  ++ A +L ++MP + N   W + +    ++ ++  A     
Sbjct: 600 SPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADE 659

Query: 290 KLFDMMPQRDCVSWAAIISG-YAQTGHYEEALNMFIEIKRDG 330
           K+  + P++  V    ++S  YA  G + +   + +++K  G
Sbjct: 660 KITQLAPEK--VGIHVLLSNIYASAGKWNDVARVRLQMKEKG 699



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 158/380 (41%), Gaps = 65/380 (17%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWN 56
           M+ G   +   +F+    ++ V YN ++S Y+++        + D+M Q+    D V+  
Sbjct: 279 MKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVT-- 336

Query: 57  VMLTGYVRNRRLGD--------ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
            ML+      +LGD        A    + + + D +S NA++  Y + G  + A +VF  
Sbjct: 337 -MLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNIS-NAIIDMYMKCGKREAACKVFDS 394

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           M +K  ++WN L+A  V +G +E A R+F    +  L+SWN ++G  V+  M   A  L 
Sbjct: 395 MSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLL 454

Query: 169 DKMH----------------------VRDVVSW-----------------NTMISGYAQD 189
            +M                         D+  W                   ++  +++ 
Sbjct: 455 REMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRC 514

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMV 245
           GD   A  +F+    +DV  WTA +      G    A   FD+M ++    ++  + A++
Sbjct: 515 GDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALL 574

Query: 246 AGYVQSNKMDMARELFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-D 299
             +     +D  R+LF AM      S  +  +  M+   G+ G + +A  L   MP + +
Sbjct: 575 TAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPN 634

Query: 300 CVSWAAIISGYAQTGHYEEA 319
            V W + ++   +  + E A
Sbjct: 635 DVIWGSFLAACRKHKNVEFA 654


>Medtr3g434800.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:11323375-11320804 | 20130731
          Length = 724

 Score =  440 bits (1131), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/719 (34%), Positives = 401/719 (55%), Gaps = 48/719 (6%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A  + + +P  + +S N     Y +   FS A   F      ++ S+N ++    ++   
Sbjct: 34  AFYIKSFIPHSTYLS-NHFTLLYSKFGTFSNALTAFHFTGYPNVFSYNTIIHACAKHNLP 92

Query: 69  GDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAAY 124
             A +LFD +P+ DVVS+N +++ +A+ G   +A  VF ++     +    + +G+++A 
Sbjct: 93  NLAHQLFDEIPEPDVVSYNTLIAVHARRGECGQAVSVFKEVREVGLVLDGFTLSGVISAS 152

Query: 125 VHNGRIEEACRLFDSKSDWELISWNC--LMGGFVKRKMLGAARKLFDKMH--VRDVVSWN 180
           V +  +      F     ++  +  C  ++  + +   L  A ++F +M    RD+VSWN
Sbjct: 153 VEDVGLVRQLHCFALLCGYDCYASVCNAVLACYGRLGRLNEAWRVFREMGEGCRDMVSWN 212

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
            MI    Q  + ++A  LF +        D+FT  ++++ +     L     F  +M + 
Sbjct: 213 AMIVACGQHREGAKALRLFGEMERMGLEVDMFTMASVLTAFTCLKDLAGGMQFHGKMIK- 271

Query: 237 NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGD--IAQARKLFDM 294
                    +G+                  RN    + +I  Y +     + +  K+F+ 
Sbjct: 272 ---------SGF-----------------HRNSHVGSGLIDLYSKCAPHGMLECMKVFEE 305

Query: 295 MPQRDCVSWAAIISGYAQTGHY-EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
           +P+ D V W  +ISG++Q     E+AL+ F E++R G   +  +F C +S C+++++  +
Sbjct: 306 IPKPDLVLWNTMISGFSQHEDLCEDALSSFREMQRVGFCPDDCSFVCVISACSNLSSPSV 365

Query: 354 GKQIHGQVVKTGYETG-CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           GKQ+H   +K+        V NA + MY KCG++ +A  +F+ + E++ VS N+MIAGYA
Sbjct: 366 GKQVHALAIKSDIPCNRVSVNNAFVAMYSKCGNLHDARRIFDTMPEQNTVSLNSMIAGYA 425

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           +HG   ++L +FE M    + P+ IT + VLSAC+H G +D G +YF  M + + + P +
Sbjct: 426 QHGAEIESLQLFELMLQEKIVPNNITFISVLSACAHTGKVDEGEKYFNMMKEKFGIEPEA 485

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
           +HY+CMIDLLGRAG+L +A+ ++  MPF+P +  W ALLGA + HGN EL  KAA    +
Sbjct: 486 EHYSCMIDLLGRAGKLNKAERIIETMPFDPGSIEWAALLGACKKHGNVELAVKAANKFLQ 545

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           +EP+N+  YV+LSN+YA++ RW +A  ++  MR+ GV+K  G SW+E+  K+H F   D 
Sbjct: 546 LEPYNAAPYVMLSNVYASANRWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDT 605

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEE----EEKEHMLKYHSEKLAVAFG 648
            HP    I+ ++ EL +K+++ GYV+  +L L   E+    EEKE  L +HSEKLA+AF 
Sbjct: 606 SHPRIKEIHTYMSELLMKLKQAGYVADIRLALVKDEDVIAIEEKERRLWHHSEKLAIAFA 665

Query: 649 ILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +++   G PI V+KNLR+C DCHNAIK IS I GR I +RD+HRFH F EG CSC DYW
Sbjct: 666 LISTEEGAPILVVKNLRICGDCHNAIKLISAISGREITVRDTHRFHCFKEGQCSCRDYW 724



 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 159/420 (37%), Gaps = 125/420 (29%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G   +AL  F+     +  SYN +I    ++   +LA  LFD++P+ D+VS+N ++  + 
Sbjct: 59  GTFSNALTAFHFTGYPNVFSYNTIIHACAKHNLPNLAHQLFDEIPEPDVVSYNTLIAVHA 118

Query: 64  RNRRLGDARRLF----------DSMPQKDVVS---------------------------W 86
           R    G A  +F          D      V+S                            
Sbjct: 119 RRGECGQAVSVFKEVREVGLVLDGFTLSGVISASVEDVGLVRQLHCFALLCGYDCYASVC 178

Query: 87  NAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKSDW- 143
           NA+L+ Y + G  +EA  VF +M    ++ +SWN ++ A   +    +A RLF       
Sbjct: 179 NAVLACYGRLGRLNEAWRVFREMGEGCRDMVSWNAMIVACGQHREGAKALRLFGEMERMG 238

Query: 144 ----------ELISWNCL--------------MGGFVKRKMLGA---------------- 163
                      L ++ CL                GF +   +G+                
Sbjct: 239 LEVDMFTMASVLTAFTCLKDLAGGMQFHGKMIKSGFHRNSHVGSGLIDLYSKCAPHGMLE 298

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDM---------------------------SQAK 196
             K+F+++   D+V WNTMISG++Q  D+                           S   
Sbjct: 299 CMKVFEEIPKPDLVLWNTMISGFSQHEDLCEDALSSFREMQRVGFCPDDCSFVCVISACS 358

Query: 197 NLFDQS--------------PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN 242
           NL   S              P   V    A V+ Y + G L +AR  FD MP++N +S N
Sbjct: 359 NLSSPSVGKQVHALAIKSDIPCNRVSVNNAFVAMYSKCGNLHDARRIFDTMPEQNTVSLN 418

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWN----TMITGYGQNGDIAQARKLFDMMPQR 298
           +M+AGY Q      + +LFE M    +   N    ++++     G + +  K F+MM ++
Sbjct: 419 SMIAGYAQHGAEIESLQLFELMLQEKIVPNNITFISVLSACAHTGKVDEGEKYFNMMKEK 478



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 10/144 (6%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV---- 57
           + G+   A R+F+TMP +++VS N+MI+GY ++     +  LF+ M Q  +V  N+    
Sbjct: 395 KCGNLHDARRIFDTMPEQNTVSLNSMIAGYAQHGAEIESLQLFELMLQEKIVPNNITFIS 454

Query: 58  MLTGYVRNRRLGDARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPH- 111
           +L+      ++ +  + F+ M +K     +   ++ M+    + G  ++A  +   MP  
Sbjct: 455 VLSACAHTGKVDEGEKYFNMMKEKFGIEPEAEHYSCMIDLLGRAGKLNKAERIIETMPFD 514

Query: 112 KNAISWNGLLAAYVHNGRIEEACR 135
             +I W  LL A   +G +E A +
Sbjct: 515 PGSIEWAALLGACKKHGNVELAVK 538


>Medtr7g023780.1 | editing factor 22 | HC | chr7:7790817-7787040 |
           20130731
          Length = 719

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/652 (37%), Positives = 371/652 (56%), Gaps = 45/652 (6%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           AR+LFD  P  D+  WNA++  Y++N       E++  M       W GL     H  + 
Sbjct: 98  ARKLFDEFPDPDLFMWNAIIRTYSRNNMYRNVIEMYRWM------KWVGL-----HPDKF 146

Query: 131 EEACRLFDSKSDWELISW--NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
              C L   K+  EL+ +  +CL+   V     G+            V   N +++ YA+
Sbjct: 147 TFPCVL---KACSELLDFGLSCLVHAHVIVYGFGS-----------HVFVQNGLVALYAK 192

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE----ISYNAM 244
            G +  A+ +FD+   + + +WTA+VSGY QNG   EA   FDQM + +     IS  ++
Sbjct: 193 CGRIGMARMVFDRLYDRTIVSWTAIVSGYGQNGEPWEALRMFDQMRKTDVKPDWISLVSV 252

Query: 245 VAGYVQSNKMDMAREL--------FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP 296
           +  Y   + ++  R L         E  P   +S    +   Y + G++  A+  FD M 
Sbjct: 253 MRAYTDVDDLEQGRSLHGCIIKMGLEEEPDLLIS----LTAFYAKCGEVTVAKSFFDKMK 308

Query: 297 QRDCVS-WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
             + V  W A+ISGYA+ GH EEA+ +F  +       +  T   A+  CA + +L+L +
Sbjct: 309 TPNKVMMWNAMISGYAKNGHAEEAVELFQAMISRNIKPDSITLRSAVLACAQVGSLKLAQ 368

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
            +   V K+ Y    FV   L+ MY KCGS+  A  VF+    KDVV W+ MI GY  HG
Sbjct: 369 WMDDYVRKSKYGGDIFVNTTLIDMYAKCGSVESARLVFDRASVKDVVMWSAMIMGYGLHG 428

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY 475
            G +A+ ++ +MK  GV P+++T +G+L+ACSH+GLI +G E F+ M +D+ + P ++HY
Sbjct: 429 QGWEAIYLYHAMKQEGVCPNDVTFIGLLTACSHSGLIKQGWELFHCM-RDFGIKPRNEHY 487

Query: 476 TCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEP 535
           +C++DLLGRAG L++A   +  MP EP  + WGALL A +IH    LGE AA+ +F ++P
Sbjct: 488 SCVVDLLGRAGYLKQAYVFILKMPIEPGVSVWGALLSACKIHRCVTLGEYAAQKLFSLDP 547

Query: 536 HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHP 595
           +N+G YV LSNLYA+S  W     +R  M++ G+ K  GYS +++  K+H F  GD  HP
Sbjct: 548 YNTGHYVQLSNLYASSRMWDRVAYIRVLMKEKGLTKYLGYSVIDINEKLHTFHAGDMSHP 607

Query: 596 EKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG 655
           +   I+  L+  + +++  G+V  T+ VLHD+  EEKE  L  HSE++AVA+G+++    
Sbjct: 608 QAKEIFYELQRQERRLKEVGFVPHTESVLHDLNYEEKEENLCIHSERIAVAYGLISTAPR 667

Query: 656 RPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
             +R+ KNLR C +CH+AIK ISK+  R II+RD++RFHHF +G+CSCGDYW
Sbjct: 668 TTLRITKNLRACVNCHSAIKLISKLFEREIIVRDANRFHHFKDGLCSCGDYW 719



 Score =  123 bits (308), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 4/255 (1%)

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           G I  ARKLFD  P  D   W AII  Y++   Y   + M+  +K  G   ++ TF C L
Sbjct: 93  GQIFYARKLFDEFPDPDLFMWNAIIRTYSRNNMYRNVIEMYRWMKWVGLHPDKFTFPCVL 152

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
             C+++    L   +H  V+  G+ +  FV N L+ +Y KCG IG A  VF+ + ++ +V
Sbjct: 153 KACSELLDFGLSCLVHAHVIVYGFGSHVFVQNGLVALYAKCGRIGMARMVFDRLYDRTIV 212

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           SW  +++GY ++G   +AL +F+ M+   VKPD I++V V+ A +    +++G      +
Sbjct: 213 SWTAIVSGYGQNGEPWEALRMFDQMRKTDVKPDWISLVSVMRAYTDVDDLEQGRSLHGCI 272

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTEL 522
            K   +         +     + G +  A+     M        W A++     +G+   
Sbjct: 273 IK-MGLEEEPDLLISLTAFYAKCGEVTVAKSFFDKMKTPNKVMMWNAMISGYAKNGH--- 328

Query: 523 GEKAAEMVFKMEPHN 537
            E+A E+   M   N
Sbjct: 329 AEEAVELFQAMISRN 343



 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 213/504 (42%), Gaps = 104/504 (20%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQ 95
           AR LFD+ P  DL  WN ++  Y RN    +   ++  M       D  ++  +L   ++
Sbjct: 98  ARKLFDEFPDPDLFMWNAIIRTYSRNNMYRNVIEMYRWMKWVGLHPDKFTFPCVLKACSE 157

Query: 96  -----NGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNC 150
                      A  + Y     +    NGL+A Y   GRI  A  +FD   D  ++SW  
Sbjct: 158 LLDFGLSCLVHAHVIVYGFG-SHVFVQNGLVALYAKCGRIGMARMVFDRLYDRTIVSWTA 216

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGDMSQAKNL-------- 198
           ++ G+ +      A ++FD+M   DV    +S  +++  Y    D+ Q ++L        
Sbjct: 217 IVSGYGQNGEPWEALRMFDQMRKTDVKPDWISLVSVMRAYTDVDDLEQGRSLHGCIIKMG 276

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-SYNAMVAGYVQSNKMDMA 257
            ++ P  D+    ++ + Y + G +  A++FFD+M   N++  +NAM++GY ++   + A
Sbjct: 277 LEEEP--DLL--ISLTAFYAKCGEVTVAKSFFDKMKTPNKVMMWNAMISGYAKNGHAEEA 332

Query: 258 RELFEAMPSRNV----------------------SSW-----------------NTMITG 278
            ELF+AM SRN+                      + W                  T+I  
Sbjct: 333 VELFQAMISRNIKPDSITLRSAVLACAQVGSLKLAQWMDDYVRKSKYGGDIFVNTTLIDM 392

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y + G +  AR +FD    +D V W+A+I GY   G   EA+ ++  +K++G   N  TF
Sbjct: 393 YAKCGSVESARLVFDRASVKDVVMWSAMIMGYGLHGQGWEAIYLYHAMKQEGVCPNDVTF 452

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
              L+ C+           H  ++K G+E             F C       D   GI+ 
Sbjct: 453 IGLLTACS-----------HSGLIKQGWEL------------FHC-----MRDF--GIKP 482

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
           ++   ++ ++    R G+ KQA +    M    ++P       +LSAC     +  G   
Sbjct: 483 RN-EHYSCVVDLLGRAGYLKQAYVFILKMP---IEPGVSVWGALLSACKIHRCVTLGE-- 536

Query: 459 FYSMNKDYSVTP-SSKHYTCMIDL 481
            Y+  K +S+ P ++ HY  + +L
Sbjct: 537 -YAAQKLFSLDPYNTGHYVQLSNL 559



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 149/347 (42%), Gaps = 67/347 (19%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV- 83
           N +++ Y +  R  +AR +FD++  R +VSW  +++GY +N    +A R+FD M + DV 
Sbjct: 184 NGLVALYAKCGRIGMARMVFDRLYDRTIVSWTAIVSGYGQNGEPWEALRMFDQMRKTDVK 243

Query: 84  VSWNAMLS--------------------------------------GYAQNGYADEAREV 105
             W +++S                                       YA+ G    A+  
Sbjct: 244 PDWISLVSVMRAYTDVDDLEQGRSLHGCIIKMGLEEEPDLLISLTAFYAKCGEVTVAKSF 303

Query: 106 FYQMPHKNAI-SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGA- 163
           F +M   N +  WN +++ Y  NG  EEA  LF +     +IS N        R  + A 
Sbjct: 304 FDKMKTPNKVMMWNAMISGYAKNGHAEEAVELFQA-----MISRNIKPDSITLRSAVLAC 358

Query: 164 ----ARKLFDKM--HVR------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
               + KL   M  +VR      D+    T+I  YA+ G +  A+ +FD++  +DV  W+
Sbjct: 359 AQVGSLKLAQWMDDYVRKSKYGGDIFVNTTLIDMYAKCGSVESARLVFDRASVKDVVMWS 418

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
           AM+ GY  +G   EA   +  M Q+    N++++  ++     S  +    ELF  M   
Sbjct: 419 AMIMGYGLHGQGWEAIYLYHAMKQEGVCPNDVTFIGLLTACSHSGLIKQGWELFHCMRDF 478

Query: 268 NVSS----WNTMITGYGQNGDIAQARKLFDMMPQRDCVS-WAAIISG 309
            +      ++ ++   G+ G + QA      MP    VS W A++S 
Sbjct: 479 GIKPRNEHYSCVVDLLGRAGYLKQAYVFILKMPIEPGVSVWGALLSA 525



 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 164/386 (42%), Gaps = 81/386 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD-------LVS 54
           + G    A  VF+ +  R+ VS+ A++SGY +N     A  +FD+M + D       LVS
Sbjct: 192 KCGRIGMARMVFDRLYDRTIVSWTAIVSGYGQNGEPWEALRMFDQMRKTDVKPDWISLVS 251

Query: 55  -------------------------------WNVMLTG-YVRNRRLGDARRLFDSM--PQ 80
                                            + LT  Y +   +  A+  FD M  P 
Sbjct: 252 VMRAYTDVDDLEQGRSLHGCIIKMGLEEEPDLLISLTAFYAKCGEVTVAKSFFDKMKTPN 311

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVHNGRIEEACRL 136
           K V+ WNAM+SGYA+NG+A+EA E+F  M  +N    +I+    + A    G ++ A  +
Sbjct: 312 K-VMMWNAMISGYAKNGHAEEAVELFQAMISRNIKPDSITLRSAVLACAQVGSLKLAQWM 370

Query: 137 FD----SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
            D    SK   ++     L+  + K   + +AR +FD+  V+DVV W+ MI GY   G  
Sbjct: 371 DDYVRKSKYGGDIFVNTTLIDMYAKCGSVESARLVFDRASVKDVVMWSAMIMGYGLHGQG 430

Query: 193 SQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQM-----PQKNEISYNA 243
            +A  L+     + V     T+  +++    +G++ +    F  M       +NE  Y+ 
Sbjct: 431 WEAIYLYHAMKQEGVCPNDVTFIGLLTACSHSGLIKQGWELFHCMRDFGIKPRNE-HYSC 489

Query: 244 MVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQN-----GDIAQARKLFDMMPQ 297
           +V    ++  +  A      MP    VS W  +++    +     G+ A A+KLF + P 
Sbjct: 490 VVDLLGRAGYLKQAYVFILKMPIEPGVSVWGALLSACKIHRCVTLGEYA-AQKLFSLDPY 548

Query: 298 RDCVSWAAIISGYAQTGHYEEALNMF 323
                          TGHY +  N++
Sbjct: 549 --------------NTGHYVQLSNLY 560



 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
           Q+H Q+V +G +   F+   L+      G I  A  +F+   + D+  WN +I  Y+R+ 
Sbjct: 65  QVHNQLVLSGLQHNRFLMTKLVNQSSNLGQIFYARKLFDEFPDPDLFMWNAIIRTYSRNN 124

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
             +  + ++  MK +G+ PD+ T   VL ACS   L+D G
Sbjct: 125 MYRNVIEMYRWMKWVGLHPDKFTFPCVLKACSE--LLDFG 162


>Medtr2g094430.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:40268645-40272453 | 20130731
          Length = 678

 Score =  439 bits (1128), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/608 (39%), Positives = 347/608 (57%), Gaps = 49/608 (8%)

Query: 148 WNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQD-----GDMSQAKNL 198
           +N ++ G V +     A  L+  MH    V D  +++ ++   A+      G M  +  +
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSL-V 130

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAR 258
           F      DVF  T +V  Y + G L +A   FD M  KN +S+  M+ G ++  K   A 
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190

Query: 259 ELF---------------------------------------EAMPSRNVSSWNTMITGY 279
           +LF                                       E   SRNV    +++  Y
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMY 250

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + G + +AR +FD M ++D V W+A+I GYA  G   EA+ +F E+++     +     
Sbjct: 251 TKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMV 310

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
            ALS+CA + ALELG    G +    + +   +G +L+  Y KCGS+ EA  V++ ++EK
Sbjct: 311 GALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEK 370

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           D V +N +I+G A +G    A  VF  M   G+ P+E T VG+L  C+HAGL+D G  YF
Sbjct: 371 DRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYF 430

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGN 519
            SM+ D+SVTP+ +HY CM+DLL RAG L+EA +L++ MP +     WG+LLG  R+H  
Sbjct: 431 NSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRE 490

Query: 520 TELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           T+L E   + + ++EP NSG YVLLSN+Y+AS RW +A  +RS + + G+QK+ GYSWVE
Sbjct: 491 TQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVE 550

Query: 580 VQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYH 639
           V   +H+F VGD  HP   +IY  LE L   ++  GY  +T+ VL DVEEEEKEH L  H
Sbjct: 551 VDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCH 610

Query: 640 SEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEG 699
           SEKLAVAF +++  A   IRV+KNLRVC DCH AIKHISK+ GR I++RD++RFH F++G
Sbjct: 611 SEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDG 670

Query: 700 ICSCGDYW 707
            CSC DYW
Sbjct: 671 ACSCRDYW 678



 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 191/443 (43%), Gaps = 49/443 (11%)

Query: 10  LRVFNTMPRRS-SVSYNAMISGYLRNARFSLARDLFDKMPQRDLV----SWNVMLTGYVR 64
           + VF+  P  S +  YN MI G +   RF+ A  L+  M +  +V    +++ +L    R
Sbjct: 57  ILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACAR 116

Query: 65  NR--RLGDA--RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
                LG      +F +    DV     ++  Y++ G+  +A +VF  M  KN +SW G+
Sbjct: 117 LNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGM 176

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH-------- 172
           +   +  G+  EA  LF       L+       GFV  ++L A  +L D           
Sbjct: 177 ICGCIEFGKFREAVDLFRG-----LLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCM 231

Query: 173 -----VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
                 R+V    +++  Y + G M +A+ +FD    +D+  W+AM+ GY  NG+  EA 
Sbjct: 232 RECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAI 291

Query: 228 TFFDQMPQKNEISYNAMVAGYVQSNKMDMAREL---------FEAMPSRNVSSWNTMITG 278
             F +M + N       + G + S     A EL         +E   S  V    ++I  
Sbjct: 292 ELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG-TSLIDF 350

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y + G + +A  ++ MM ++D V + A+ISG A  G    A  +F ++ + G   N  TF
Sbjct: 351 YAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTF 410

Query: 339 SCALSTCADIAALELGKQIHG------QVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
              L  C     ++ G+           V  T    GC V      +  + G + EA+++
Sbjct: 411 VGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMV-----DLLARAGFLDEAHNL 465

Query: 393 FEGIEEK-DVVSWNTMIAGYARH 414
            +G+  K +V+ W +++ G   H
Sbjct: 466 IKGMPMKANVIVWGSLLGGCRLH 488



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 143/337 (42%), Gaps = 63/337 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL--------- 52
           + G    A +VF+ M  ++ VS+  MI G +   +F  A DLF  + +  L         
Sbjct: 151 KCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVR 210

Query: 53  -------------------------VSWNVMLTG-----YVRNRRLGDARRLFDSMPQKD 82
                                    +S NV +       Y +   + +AR +FD M +KD
Sbjct: 211 VLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKD 270

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVHNGRIEEACRLFD 138
           +V W+AM+ GYA NG   EA E+F++M   N      +  G L++    G +E       
Sbjct: 271 IVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG-NWAK 329

Query: 139 SKSDWELISWNCLMGG-----FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
              ++E    N ++G      + K   +  A  ++  M  +D V +N +ISG A  G + 
Sbjct: 330 GLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVG 389

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YN 242
            A  +F Q       P++   T+  ++ G    G++D+ R +F+ M     ++     Y 
Sbjct: 390 AAFGVFGQMGKFGIPPNEH--TFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYG 447

Query: 243 AMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITG 278
            MV    ++  +D A  L + MP + NV  W +++ G
Sbjct: 448 CMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGG 484


>Medtr8g105720.1 | PPR containing plant-like protein | HC |
           chr8:44583313-44585824 | 20130731
          Length = 701

 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/626 (36%), Positives = 355/626 (56%), Gaps = 35/626 (5%)

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH--- 172
           +W+ ++  Y  +  +  +   F+S     +     +    +K   L    KL   +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 173 VR-----DVVSWNTMISGYAQ---------------DGDMSQAKNLFDQSPHQDVFTWTA 212
           VR     D+   N +I+ YA+               +  +   K +FD  P +DV +W  
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 213 MVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAMPSR 267
           +++G+ QNGM  EA     +M +  ++     + ++++  + +   ++  +E+      R
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEI-HGYAVR 255

Query: 268 N-----VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           N     V   +++I  Y +   +  + + F ++P++D +SW +II+G  Q G ++  L  
Sbjct: 256 NGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGF 315

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F  + ++       +FS  +  CA + AL LG+Q+HG +V+ G++   F+ ++L+ MY K
Sbjct: 316 FRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAK 375

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
           CG+I  A  VF+ I+++D+V+W  +I G A HG    A+ +FE+M   GV+P  +  + V
Sbjct: 376 CGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAV 435

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP-FE 501
           L+ACSHAGL+D G  YF SM +D+ + P  +HY  + DLLGRAGRLEEA D + NM   +
Sbjct: 436 LTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQ 495

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMR 561
           P  + W  LL A R H + EL EK  + +  ++  N G YVL+SN+Y+A+ RW DA  +R
Sbjct: 496 PTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLR 555

Query: 562 SRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTK 621
             MR  G++K    SW+EV N++H F  GD  HP  D+I   L+ L  +M +EGYV  T 
Sbjct: 556 IHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTN 615

Query: 622 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIV 681
            VLHDV+EE K  +L  HSE+LA+A+GI++  AG  IRVIKN+RVC DCH AIK I+KIV
Sbjct: 616 QVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIV 675

Query: 682 GRLIILRDSHRFHHFNEGICSCGDYW 707
           GR I +RD+ RFHHF  G CSCGDYW
Sbjct: 676 GREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/427 (22%), Positives = 185/427 (43%), Gaps = 69/427 (16%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA+I+ Y   A+F  A  +FD  P+R     + +             +++FD MP +DVV
Sbjct: 149 NALINTY---AKFHNAGKVFDVFPKRGESGIDCV-------------KKVFDMMPVRDVV 192

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHK-----NAISWNGLLAAYVHNGRIEEACRL--- 136
           SWN +++G+AQNG   EA ++  +M        ++ + + +L  +  +  + +   +   
Sbjct: 193 SWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGY 252

Query: 137 -FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
              +  D ++   + L+  + K   L  + + F  +  +D +SWN++I+G          
Sbjct: 253 AVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAG---------- 302

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAGYVQS 251
                                 VQNG  D    FF +M ++N     +S+++++      
Sbjct: 303 ---------------------CVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHL 341

Query: 252 NKMDMARELFEAMP----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAII 307
             + + R+L   +       N    ++++  Y + G+I  AR +FD + +RD V+W AII
Sbjct: 342 TALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAII 401

Query: 308 SGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT-GY 366
            G A  GH  +A+++F  +  DG       F   L+ C+    ++ G +    + +  G 
Sbjct: 402 MGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGI 461

Query: 367 ETGCFVGNALLGMYFKCGSIGEANDVFE---GIEEKDVVSWNTMIAGYARHGFGKQALMV 423
             G     A+  +  + G + EA D      G++    V W+ ++A    H   + A  V
Sbjct: 462 APGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSV-WSILLAACRAHKSVELAEKV 520

Query: 424 FESMKTI 430
            + + ++
Sbjct: 521 LDKLLSV 527



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 196/462 (42%), Gaps = 83/462 (17%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR---------------- 50
           D   +VF+ MP R  VS+N +I+G+ +N  +  A D+  +M +                 
Sbjct: 177 DCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPI 236

Query: 51  ------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
                                   D+   + ++  Y +  RL  + R F  +P+KD +SW
Sbjct: 237 FAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISW 296

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVH-----NGRIEEACRLF 137
           N++++G  QNG  D     F +M  +N    A+S++ ++ A  H      GR    C + 
Sbjct: 297 NSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR 356

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKN 197
               D E I+ + L+  + K   +  AR +FD++  RD+V+W  +I G A  G    A +
Sbjct: 357 LGFDDNEFIA-SSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVS 415

Query: 198 LFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGY 248
           LF+      V      + A+++     G++DE   +F+ M +   I+     Y A+    
Sbjct: 416 LFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLL 475

Query: 249 VQSNKMDMARELFEAM----PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWA 304
            ++ +++ A +    M    P+ +V  W+ ++     +  +  A K+ D +   D  +  
Sbjct: 476 GRAGRLEEAYDFISNMRGVQPTGSV--WSILLAACRAHKSVELAEKVLDKLLSVDSENMG 533

Query: 305 AII---SGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH--- 358
           A +   + Y+    +++A  + I +++ G    + T +C+         +E+G Q+H   
Sbjct: 534 AYVLMSNIYSAAQRWKDAARLRIHMRKKGL---KKTPACSW--------IEVGNQVHTFM 582

Query: 359 -GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
            G      Y+      + LL    K G + + N V   ++E+
Sbjct: 583 AGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEE 624


>Medtr2g058990.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:24361845-24364937 | 20130731
          Length = 975

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 68/746 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLF------DSM 78
           NA+I+ Y +      A  +FDKMPQR+LVSWN ++   + N    ++  LF      D  
Sbjct: 235 NALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEG 294

Query: 79  PQKDVVSWNAMLSGYAQNGYADEAR--EVFYQMPHKNAISW-----NGLLAAYVHNGRIE 131
              DV +   ++   A+ G   E R   VF+ +  K  +       + LL  Y   G + 
Sbjct: 295 LMPDVATMVTVIPLCARQG---EVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLC 351

Query: 132 EACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN----------- 180
           EA  LFD+ ++  +ISWN ++GG+ K +    A +L  KM + D V  N           
Sbjct: 352 EARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410

Query: 181 ------------------------------TMISGYAQDGDMSQAKNLFDQSPHQDVFTW 210
                                           ++GYA+ G +  A+ +F     + V +W
Sbjct: 411 EEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSW 470

Query: 211 TAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
            A++ G+VQNG   +A   +  M     + +  +  ++++   +   +   +E+  +M  
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSM-L 529

Query: 267 RNVSSWN-----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
           RN    +     ++++ Y Q G I  A+  FD M +++ V W  +I+G++Q     +AL+
Sbjct: 530 RNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
           MF ++       +  +   AL  C+ ++AL LGK++H   VK+      FV  +L+ MY 
Sbjct: 590 MFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYA 649

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
           KCG + ++ ++F+ +  K  V+WN +I GY  HG G++A+ +F+SM+  G +PD +T + 
Sbjct: 650 KCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIA 709

Query: 442 VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           +L+AC+HAGL+  G EY   M   + + P  +HY C++D+LGRAGRL EA +L+  +P +
Sbjct: 710 LLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDK 769

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMR 561
           P +  W +LL + R + + ++GEK A  + ++ P  +  YVL+SN YA  G+W +   MR
Sbjct: 770 PDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMR 829

Query: 562 SRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTK 621
            RM+++G+QK  G SW+E+  K+ +F VGD    +  +I     EL+ K+ + GY   T 
Sbjct: 830 QRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTS 889

Query: 622 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIV 681
            VLH++EE+EK  +L+ HSEKLA++FG+L    G  +RV KNLR+C DCHNAIK +SKI 
Sbjct: 890 CVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKID 949

Query: 682 GRLIILRDSHRFHHFNEGICSCGDYW 707
            R II+RD+ RFHHF  G CSCGDYW
Sbjct: 950 KREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  213 bits (542), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 166/592 (28%), Positives = 275/592 (46%), Gaps = 100/592 (16%)

Query: 6   CDS---ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ-RDLVSWNVMLTG 61
           CDS   +  VFN   R++   +NA++SGYLRN+ F  A  +F +M    + V  N  L  
Sbjct: 142 CDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPC 201

Query: 62  YVR------NRRLGDARRLF--DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
            ++      + RLG+A   F   +    DV   NA+++ Y + G+ + A +VF +MP +N
Sbjct: 202 VIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRN 261

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSD------------------------------- 142
            +SWN ++ A + NG  EE+  LF    +                               
Sbjct: 262 LVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVF 321

Query: 143 ----------WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
                      EL   + L+  + K   L  AR LFD  + ++V+SWN+MI GY++D D 
Sbjct: 322 HGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDF 380

Query: 193 SQAKNLFDQSPHQD--------VFTWTAMVSGYVQNGMLDEARTFFDQ--MPQKNEISYN 242
             A  L  +   +D        +     +    +Q   L E   +  +    Q +E+  N
Sbjct: 381 RGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVAN 440

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVS 302
           A VAGY +   +  A  +F  M S+ VSSWN +I G+ QNG            P++    
Sbjct: 441 AFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNG-----------FPRK---- 485

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
                           AL++++ ++  G   +  T +  LS CA + +L  GK+IHG ++
Sbjct: 486 ----------------ALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSML 529

Query: 363 KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALM 422
           + G+E   F+  +L+ +Y +CG I  A   F+ +EEK++V WNTMI G++++ F   AL 
Sbjct: 530 RNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALD 589

Query: 423 VFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLL 482
           +F  M +  + PDEI+++G L ACS    +  G E      K + +T  S     +ID+ 
Sbjct: 590 MFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSH-LTEHSFVTCSLIDMY 648

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
            + G +E++Q++   +  +    +W  L+    IHG+   G KA E+   M+
Sbjct: 649 AKCGCMEQSQNIFDRVHLK-GEVTWNVLITGYGIHGH---GRKAIELFKSMQ 696



 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 142/284 (50%), Gaps = 13/284 (4%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           DVV    +++ Y+       +  +F+ S  +++F W A++SGY++N +  +A   F +M 
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 235 QKNE-ISYNAMVAGYVQSNKMDMARELFEAMPS--------RNVSSWNTMITGYGQNGDI 285
              E +  N  +   +++        L EA+           +V   N +I  YG+ G +
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL--NRSTFSCALS 343
             A K+FD MPQR+ VSW +++    + G +EE+  +F  +    E L  + +T    + 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
            CA    + LG   HG  +K G      V ++LL MY KCG + EA  +F+   EK+V+S
Sbjct: 308 LCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVIS 366

Query: 404 WNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEITMVGVLSAC 446
           WN+MI GY++    + A  +   M+    VK +E+T++ VL  C
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 10/218 (4%)

Query: 311 AQTGHYEEALNMFI----EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG- 365
             TG+  +A N       ++     S  +      L  C +   +E+G++IH  +  +  
Sbjct: 65  CNTGNLNQAFNFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPH 124

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
           ++    +   L+ MY  C S  ++  VF     K++  WN +++GY R+   + A+ VF 
Sbjct: 125 FQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFV 184

Query: 426 SMKTIG-VKPDEITMVGVLSACSHAGLID-RGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
            M ++    PD  T+  V+ AC   G+ D R  E  +       V         +I + G
Sbjct: 185 EMISLTEFVPDNFTLPCVIKAC--VGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYG 242

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           + G +E A  +   MP +    SW +++ A   +G  E
Sbjct: 243 KFGFVESAVKVFDKMP-QRNLVSWNSVMYACLENGVFE 279


>Medtr3g084440.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:38114703-38117150 | 20130731
          Length = 616

 Score =  431 bits (1109), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 340/569 (59%), Gaps = 13/569 (2%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGY----AQDGDMSQAKNLFDQSPHQD 206
           L+  + K  +L  A KLFD +  +D V+W T++S            S +  +  +    D
Sbjct: 49  LIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPD 108

Query: 207 VFTWTAMV-------SGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARE 259
            F +++++       S +V+ G    AR       + +++  +++V  Y +    D  R 
Sbjct: 109 HFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFE-DDVVKSSLVDMYAKFELPDYGRA 167

Query: 260 LFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
           +F+++   +  SW  MI+GY ++G   +A +LF   P ++  +W A+ISG  Q+G+  +A
Sbjct: 168 VFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDA 227

Query: 320 LNMFIEIKRDGESL-NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           L +F+E++R+G S+ +    S  +  CA+ A  ELGKQ+H  V+  GYE+  F+ NAL+ 
Sbjct: 228 LYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVD 287

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY KC  +  A  +F  +  KDVVSW ++I G A+HG  ++AL +++ M   GVKP+E+T
Sbjct: 288 MYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVT 347

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            VG++ ACSH GL+ +G   F SM +D+ + PS +HYTC++DL  R+G L+EA++L+R M
Sbjct: 348 FVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTM 407

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
           P +P   +W ALL A + HGNT++  + A+ +  ++P +   Y+LLSN+YA +G W +  
Sbjct: 408 PVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDPSSYILLSNIYAGAGMWENVS 467

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R  M    V+KV GYS V++  +   F  G+   P KD I   + +LD +MRR GYV 
Sbjct: 468 MVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVP 527

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHIS 678
            T  VL D++++EKE  L +HSE+LA+A+G+L    G  IR++KNLRVC DCH  +K IS
Sbjct: 528 DTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLIS 587

Query: 679 KIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            I  R I +RD  R+HHF +G CSC D+W
Sbjct: 588 AITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 198/410 (48%), Gaps = 23/410 (5%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK--- 112
             ++  Y +   L DA +LFD++PQ+D V+W  +LS    +    +A  +   + H+   
Sbjct: 47  KTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQ 106

Query: 113 -NAISWNGLLAAYVHNGRI------EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
            +   ++ L+ A  + G +      +   R   S    + +  + L+  + K ++    R
Sbjct: 107 PDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGR 166

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
            +FD +     +SW  MISGYA+ G   +A  LF +SP ++++ WTA++SG VQ+G  ++
Sbjct: 167 AVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNAND 226

Query: 226 ARTFFDQMPQK-----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW----NTMI 276
           A   F +M ++     + +  +++V     S   ++ +++   + +    S     N ++
Sbjct: 227 ALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALV 286

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y +  D+  A+ +F  M ++D VSW +II G AQ G  EEAL ++ ++   G   N  
Sbjct: 287 DMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEV 346

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
           TF   +  C+ +  +  G+ +   +V+  G          LL ++ + G + EA ++   
Sbjct: 347 TFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRT 406

Query: 396 IEEK-DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
           +  K D  +W  +++    HG  K A+ + + +  + +KP++ +   +LS
Sbjct: 407 MPVKPDEPTWAALLSACKHHGNTKMAVRIADHL--LDLKPEDPSSYILLS 454



 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 150/310 (48%), Gaps = 29/310 (9%)

Query: 34  NARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGY 93
           +ARF L+    D + +  LV        Y +       R +FDS+ +   +SW AM+SGY
Sbjct: 134 HARFLLSPFFEDDVVKSSLVDM------YAKFELPDYGRAVFDSIFELSSISWTAMISGY 187

Query: 94  AQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF-DSKSDWELISWNCLM 152
           A++G   EA E+F + P KN  +W  L++  V +G   +A  LF + + +   I+   ++
Sbjct: 188 ARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVL 247

Query: 153 GGFVKRKMLGAARKLFDKMHVRDVV--------SWNTMISGYAQDGDMSQAKNLFDQSPH 204
              V      A R+L  ++H   +           N ++  YA+  D+  AK +F +   
Sbjct: 248 SSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRR 307

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAREL 260
           +DV +WT+++ G  Q+G+ +EA T +D M     + NE+++  ++        +   R L
Sbjct: 308 KDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRAL 367

Query: 261 FEAM-------PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISGYAQ 312
           F++M       PS  +  +  ++  + ++G + +A  L   MP + D  +WAA++S    
Sbjct: 368 FKSMVEDFGIRPS--LQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKH 425

Query: 313 TGHYEEALNM 322
            G+ + A+ +
Sbjct: 426 HGNTKMAVRI 435



 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 145/311 (46%), Gaps = 31/311 (9%)

Query: 35  ARFSLA---RDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLS 91
           A+F L    R +FD + +   +SW  M++GY R+ R  +A  LF   P K++ +W A++S
Sbjct: 157 AKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALIS 216

Query: 92  GYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISW--- 148
           G  Q+G A++A  +F +M  +     + L+ + V       A R    +    +I+    
Sbjct: 217 GLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYE 276

Query: 149 ------NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ- 201
                 N L+  + K   + AA+ +F +M  +DVVSW ++I G AQ G   +A  L+D  
Sbjct: 277 SCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDM 336

Query: 202 -----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAMVAGYVQS 251
                 P++   T+  ++      G++ + R  F  M +   I      Y  ++  + +S
Sbjct: 337 VLAGVKPNE--VTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRS 394

Query: 252 NKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQARK----LFDMMPQRDCVSWAAI 306
             +D A  L   MP + +  +W  +++    +G+   A +    L D+ P+ D  S+  +
Sbjct: 395 GHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPE-DPSSYILL 453

Query: 307 ISGYAQTGHYE 317
            + YA  G +E
Sbjct: 454 SNIYAGAGMWE 464



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 57/276 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSW------ 55
           R+G    AL +F   P ++  ++ A+ISG +++   + A  LF +M +R+ VS       
Sbjct: 189 RSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEM-RREGVSIADPLVL 247

Query: 56  -----------------------------------NVMLTGYVRNRRLGDARRLFDSMPQ 80
                                              N ++  Y +   +  A+ +F  M +
Sbjct: 248 SSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRR 307

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRL 136
           KDVVSW +++ G AQ+G A+EA  ++  M       N +++ GL+ A  H G + +   L
Sbjct: 308 KDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRAL 367

Query: 137 FDSKSD-----WELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDG 190
           F S  +       L  + CL+  F +   L  A  L   M V+ D  +W  ++S     G
Sbjct: 368 FKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHG 427

Query: 191 DMSQ----AKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
           +       A +L D  P +D  ++  + + Y   GM
Sbjct: 428 NTKMAVRIADHLLDLKP-EDPSSYILLSNIYAGAGM 462



 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 43/205 (20%)

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           + K++H Q++K+G          L+  Y KCG + +A  +F+ + ++D V+W T+++   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG---------------------- 450
                 +A  +   +   G++PD      ++ AC++ G                      
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 451 ---------------LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
                          L D G   F S+ +  S++     +T MI    R+GR  EA +L 
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSIS-----WTAMISGYARSGRKLEALELF 200

Query: 496 RNMPFEPPAASWGALLGASRIHGNT 520
           R  PF+   A W AL+      GN 
Sbjct: 201 RESPFKNLYA-WTALISGLVQSGNA 224


>Medtr2g101710.1 | PPR containing plant protein | HC |
           chr2:43758970-43756533 | 20130731
          Length = 620

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/534 (40%), Positives = 322/534 (60%), Gaps = 9/534 (1%)

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKN 237
           ++  YA    +  A+NLFD+ P Q++F W  ++ GY  NG  D A   + +M     + +
Sbjct: 88  LVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPD 147

Query: 238 EISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYGQNGDIAQARKLFD 293
             +   ++      + +   R + E +      R++     +I  Y + G +  A ++FD
Sbjct: 148 NFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFD 207

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            +  RD V W ++++ YAQ GH +E++++  E+  +G     +T    +S+ AD+A L  
Sbjct: 208 KIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPY 267

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G++IHG   + G+++   V  AL+ MY KCGS+  A  +FE + EK VVSWN +I GYA 
Sbjct: 268 GREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAM 327

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           HG    AL +F+ M+    +PD IT VGVL+ACS   L+D G   +  M +DY +TP+ +
Sbjct: 328 HGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQ 386

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HYTCMIDLLG  G+L+EA DL+RNM  +P +  WGALL + +IHGN EL E A E + ++
Sbjct: 387 HYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIEL 446

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
           EP +SG YV+L+N+YA SG+W     +R  M D  ++K    SW+EV+NK++ F  GD  
Sbjct: 447 EPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVS 506

Query: 594 HPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 653
           H   D IYA L+ L+  M   GY   T  V HDVEE+EK  M+  HSE+LA+AFG+++  
Sbjct: 507 HSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTS 566

Query: 654 AGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            G  + + KNLR+CEDCH AIK ISKI+ R I +RD +R+H F  G+CSCGD+W
Sbjct: 567 PGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 171/406 (42%), Gaps = 54/406 (13%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
            +DL +  V L  Y  +  L +AR LFD +P++++  WN ++ GYA NG  D A  ++++
Sbjct: 81  NQDLATKLVHL--YAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHK 138

Query: 109 M----PHKNAISWNGLLAAYVHNGRIEEACRLFDS--KSDWE--LISWNCLMGGFVKRKM 160
           M       +  +   +L A      I E   + +   KS WE  L     L+  + K   
Sbjct: 139 MLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGC 198

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSG 216
           +  A ++FDK+ VRD V WN+M++ YAQ+G   ++ +L  +     V     T   ++S 
Sbjct: 199 VMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISS 258

Query: 217 YVQNGMLDEARTF----FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW 272
                 L   R      +    Q N+    A++  Y +   + +A  LFE +  + V SW
Sbjct: 259 SADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSW 318

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N +ITGY  +G    A  LFD M + D                                 
Sbjct: 319 NAIITGYAMHGLAVGALDLFDKMRKED--------------------------------R 346

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEAND 391
            +  TF   L+ C+    L+ G+ ++  +V+  G          ++ +   CG + EA D
Sbjct: 347 PDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYD 406

Query: 392 VFEGIEEK-DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           +   +  K D   W  ++     HG  + A +  E  K I ++PD+
Sbjct: 407 LIRNMSVKPDSGVWGALLNSCKIHGNVELAELALE--KLIELEPDD 450



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 92/369 (24%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP-------------------- 79
           AR+LFDK+P+++L  WNV++ GY  N    +A  L+  M                     
Sbjct: 101 ARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSA 160

Query: 80  -------------------QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
                              ++D+    A++  YA+ G   +A  VF ++  ++A+ WN +
Sbjct: 161 LSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSM 220

Query: 121 LAAYVHNGRIEEA---CR----------------LFDSKSDWELISWNCLMGGF------ 155
           LAAY  NG  +E+   CR                +  S +D   + +   + GF      
Sbjct: 221 LAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGF 280

Query: 156 -----VKRKMLG---------AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
                VK  ++           A  LF+++  + VVSWN +I+GYA  G    A +LFD+
Sbjct: 281 QSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDK 340

Query: 202 SPHQDV---FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNK 253
              +D     T+  +++   +  +LDE R  ++ M +   I+     Y  M+       +
Sbjct: 341 MRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQ 400

Query: 254 MDMARELFEAMPSRNVSS-WNTMITGYGQNGDIAQA----RKLFDMMPQRDCVSWAAIIS 308
           +D A +L   M  +  S  W  ++     +G++  A     KL ++ P  D  ++  + +
Sbjct: 401 LDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPD-DSGNYVILAN 459

Query: 309 GYAQTGHYE 317
            YAQ+G +E
Sbjct: 460 MYAQSGKWE 468



 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
           ++  L +C D  AL  GKQ+H Q    G      +   L+ +Y    S+  A ++F+ I 
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           ++++  WN +I GYA +G    A++++  M   G++PD  T+  VL ACS    I  G
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167



 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 124/284 (43%), Gaps = 30/284 (10%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNAR----FSLARDLFD---KMPQRDLV-----SWNVM 58
           RVF+ +  R +V +N+M++ Y +N       SL R++     +  +  LV     S +V 
Sbjct: 204 RVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVA 263

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
              Y R       R  F S    D V   A++  YA+ G    A  +F ++  K  +SWN
Sbjct: 264 CLPYGREIHGFGWRHGFQS---NDKVK-TALIDMYAKCGSVKVALALFERLREKRVVSWN 319

Query: 119 GLLAAYVHNGRIEEACRLFDS--KSDW-ELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
            ++  Y  +G    A  LFD   K D  + I++  ++    + ++L   R L++ M VRD
Sbjct: 320 AIITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLM-VRD 378

Query: 176 ------VVSWNTMISGYAQDGDMSQAKNLF-DQSPHQDVFTWTAMVSGYVQNGMLDEART 228
                 V  +  MI      G + +A +L  + S   D   W A+++    +G ++ A  
Sbjct: 379 YGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAEL 438

Query: 229 FFDQMPQ---KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV 269
             +++ +    +  +Y  +   Y QS K +   +L + M  + +
Sbjct: 439 ALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRI 482


>Medtr8g027810.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:10160876-10157214 | 20130731
          Length = 967

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/739 (32%), Positives = 399/739 (53%), Gaps = 36/739 (4%)

Query: 4   GHC---DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV--- 57
           G C   D A +VF+  P +    +N ++   LR+ R+  A +LF  M QRD     V   
Sbjct: 200 GKCWSIDKANQVFHETPYKEDFLWNTIVMANLRSERWKNALELFCDM-QRDSAKATVGTT 258

Query: 58  --MLTGYVRNRRLGDARRLFDSMPQKDVVS----WNAMLSGYAQNGYADEAREVFYQMP- 110
             ML    + + L + ++L     +  +VS     N+++S Y++N     AR VF  M  
Sbjct: 259 VKMLQACGKLKALNEGKQLHGYALRFGLVSNTLVCNSIISMYSRNSRFKLARAVFDSMED 318

Query: 111 -HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW-----ELISWNCLMGGFVKRKMLGAA 164
             +N  SWN ++ +Y  +G + +A     +  +      ++I+WN ++ G++ R      
Sbjct: 319 HSRNLSSWNSVIFSYAVDGCLNDALDTIRNGMECSGIKPDIITWNSILSGYLLRGSFEMV 378

Query: 165 RKLFDKMHV----RDVVSWNTMISGYAQDGDMSQAKNL----FDQSPHQDVFTWTAMVSG 216
              F  +H      D  S  + +    + G     K +       + + DV+  T++V  
Sbjct: 379 LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 438

Query: 217 YVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SW 272
           YV+N  L++A+    +   KN  ++N++++GY    +   A +L   M    ++    +W
Sbjct: 439 YVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTW 498

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
           N +++GY   G I +A  + + +       + VSW A+ISG +Q   Y +AL +F +++ 
Sbjct: 499 NGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQA 558

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
           +    N +T    L  CA  + L+ G+++H   +K G+    +V  AL+ MY + G +  
Sbjct: 559 ENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKV 618

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A +VF  I+EK +  WN M+ GYA H  G++ +++++ M+   ++PD IT   +LSAC +
Sbjct: 619 AYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKN 678

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           +GL+D G +YF SM +DY++ P+ +HY CM+DLLG++G L+EA   +  MP +P A+ WG
Sbjct: 679 SGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWG 738

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           ALL + +IH N +L E AA  +FKMEP+NS  YVL+ NLY++  RW     ++  M  + 
Sbjct: 739 ALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVLA 798

Query: 569 VQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVE 628
           ++    +SW +V   IH F+     HPE+  IY  L +L  ++R+ GY      V  +++
Sbjct: 799 MKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNID 858

Query: 629 EEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILR 688
           + EKE +L  H+EKLA+ +G++ +  G PIR++KN R+C DCH   K+IS +  R I+LR
Sbjct: 859 DNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKREILLR 918

Query: 689 DSHRFHHFNEGICSCGDYW 707
           D  RFHHF  G C+C D W
Sbjct: 919 DGGRFHHFKNGKCACNDRW 937



 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 118/268 (44%), Gaps = 4/268 (1%)

Query: 254 MDMARELFEAMPSRNVSSWN-TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
           M++  ++ +   + N ++ + TM+  Y + GD   A K+F +   R+ + W + +  +  
Sbjct: 71  MELHAQIIKTPKNYNFATIDGTMMRNYLEFGDFLSAIKIFFVGFARNYLLWNSFLEEFES 130

Query: 313 TGHYE-EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCF 371
            G    E L +F E+   G   +   F+  L  C  +     G ++H  ++K G+     
Sbjct: 131 FGGDPFEILVVFNEMYSKGVEFDSKAFTFVLKICLALREFLFGLEVHACLIKKGFHVDVH 190

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG 431
           +  AL+  Y KC SI +AN VF     K+   WNT++    R    K AL +F  M+   
Sbjct: 191 LSCALINFYGKCWSIDKANQVFHETPYKEDFLWNTIVMANLRSERWKNALELFCDMQRDS 250

Query: 432 VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
            K    T V +L AC     ++ G +  +     + +  ++     +I +  R  R + A
Sbjct: 251 AKATVGTTVKMLQACGKLKALNEGKQ-LHGYALRFGLVSNTLVCNSIISMYSRNSRFKLA 309

Query: 492 QDLMRNMP-FEPPAASWGALLGASRIHG 518
           + +  +M       +SW +++ +  + G
Sbjct: 310 RAVFDSMEDHSRNLSSWNSVIFSYAVDG 337


>Medtr6g022140.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:7700828-7696262 | 20130731
          Length = 857

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 376/669 (56%), Gaps = 40/669 (5%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF---YQMPHK 112
           N ++  Y +  ++  +R LFD+   KD VSWN+++S YA+ G      EVF   Y+M H+
Sbjct: 81  NSLINMYSKCNQIQTSRFLFDNSSIKDNVSWNSIISAYAKLGTKTSYGEVFQLVYRM-HR 139

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
              +++    + V N      C   D          NC  G    R + G   KL     
Sbjct: 140 FGYAFSDYTLSSVLNA----CCFCVDD---------NCFYG----RLIHGFGIKLGLDF- 181

Query: 173 VRDVVSWNTMISGYAQDGDMSQAKNLFD--QSPHQDVFTWTAMVSGYVQNGML----DEA 226
             +VV    ++  YA+ G +  A  +F+      ++ F + AM++G+++ G+      EA
Sbjct: 182 --NVVVATALLDMYAKSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAREA 239

Query: 227 RTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITG 278
              F++M +     ++ +++++V   V +   ++ R++   +   ++       ++++  
Sbjct: 240 VRVFNEMRRMGVKCSKFTFSSVVKACVGNGDFEVGRQIHGQVLKNSLEGDEFVASSLVDL 299

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y   G+I    + F+M P+ D VSW + I+G  + G +E  L++F     DG  L+    
Sbjct: 300 YSFFGEIDDGLRCFEMTPKLDVVSWTSAIAGCVKNGKFENGLSLFYRFLADGRKLDEFIV 359

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           S  +  CAD+AA   G+QI G  +K G      V N  + MY K G I  A + F+  E+
Sbjct: 360 SSVMGACADMAAARTGEQIQGYALKFGVADFTVVKNTQICMYAKSGDIDSARNTFQETEK 419

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            DVVSW+ MI  YA+HGF K++L +FE M   G+ P++IT++GVL+ACSH GL+D G  Y
Sbjct: 420 PDVVSWSVMICSYAQHGFAKESLRLFELMTVSGIVPNQITLLGVLTACSHGGLVDEGLGY 479

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           + +M KDY +  + KH  C++DLLGRAGRLEEAQ  + +  FE     W ALLGA ++H 
Sbjct: 480 YETMKKDYGMAANVKHSACIVDLLGRAGRLEEAQRFIYDSGFEDDPVLWRALLGACKVHK 539

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           +TE+G++ A+ V ++EPH +  YVLL NLY   G+   A  +R  M+D GV+K  G SW+
Sbjct: 540 DTEMGKRIADKVIELEPHEAASYVLLYNLYNDVGKKKHALEVRKLMQDRGVKKEPGISWI 599

Query: 579 EVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM-LK 637
           EV N +H F V D  HP  + IY+ L EL  K++   +  + KL  +  E E+   + + 
Sbjct: 600 EVGNTVHTFLVDDRSHPISELIYSRLGELLAKIKEISF-DNEKLAFYISETEQSGTVRMS 658

Query: 638 YHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFN 697
           +HSEKLAV FGI+++P   P+RV+KNLRVC DCH  +K ISK+  R IILRD+ RFHHF 
Sbjct: 659 HHSEKLAVTFGIISLPISAPVRVMKNLRVCSDCHTTMKLISKVEKREIILRDAIRFHHFK 718

Query: 698 EGICSCGDY 706
           +G+CSC DY
Sbjct: 719 DGVCSCKDY 727



 Score =  100 bits (248), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 13/278 (4%)

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG-- 314
           A  L     ++  S  N++I  Y +   I  +R LFD    +D VSW +IIS YA+ G  
Sbjct: 65  ASILINGFLNKTSSFLNSLINMYSKCNQIQTSRFLFDNSSIKDNVSWNSIISAYAKLGTK 124

Query: 315 -HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA--ALELGKQIHGQVVKTGYETGCF 371
             Y E   +   + R G + +  T S  L+ C          G+ IHG  +K G +    
Sbjct: 125 TSYGEVFQLVYRMHRFGYAFSDYTLSSVLNACCFCVDDNCFYGRLIHGFGIKLGLDFNVV 184

Query: 372 VGNALLGMYFKCGSIGEANDVFEG--IEEKDVVSWNTMIAGYARHGF----GKQALMVFE 425
           V  ALL MY K G + +A  VFEG  ++ K+   +N MIAG+ R G      ++A+ VF 
Sbjct: 185 VATALLDMYAKSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAREAVRVFN 244

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA 485
            M+ +GVK  + T   V+ AC   G  + G +    + K+ S+       + ++DL    
Sbjct: 245 EMRRMGVKCSKFTFSSVVKACVGNGDFEVGRQIHGQVLKN-SLEGDEFVASSLVDLYSFF 303

Query: 486 GRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
           G +++        P +    SW + +     +G  E G
Sbjct: 304 GEIDDGLRCFEMTP-KLDVVSWTSAIAGCVKNGKFENG 340



 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 152/346 (43%), Gaps = 48/346 (13%)

Query: 2   RNGHCDSALRVFN--TMPRRSSVSYNAMISGYLR------NARFSLARDLFDKMPQRDL- 52
           ++G    A+RVF    +  ++   YNAMI+G+LR      NAR   A  +F++M +  + 
Sbjct: 195 KSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAR--EAVRVFNEMRRMGVK 252

Query: 53  ---VSWNVMLTGYVRNRRLGDARR-----LFDSMPQKDVVSWNAMLSGYAQNGYADEARE 104
               +++ ++   V N      R+     L +S+   + V+ ++++  Y+  G  D+   
Sbjct: 253 CSKFTFSSVVKACVGNGDFEVGRQIHGQVLKNSLEGDEFVA-SSLVDLYSFFGEIDDGLR 311

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
            F   P  + +SW   +A  V NG+ E    LF     +  ++    +  F+   ++GA 
Sbjct: 312 CFEMTPKLDVVSWTSAIAGCVKNGKFENGLSLF-----YRFLADGRKLDEFIVSSVMGAC 366

Query: 165 RKLFD------------KMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
             +              K  V D  V  NT I  YA+ GD+  A+N F ++   DV +W+
Sbjct: 367 ADMAAARTGEQIQGYALKFGVADFTVVKNTQICMYAKSGDIDSARNTFQETEKPDVVSWS 426

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMP-- 265
            M+  Y Q+G   E+   F+ M       N+I+   ++        +D     +E M   
Sbjct: 427 VMICSYAQHGFAKESLRLFELMTVSGIVPNQITLLGVLTACSHGGLVDEGLGYYETMKKD 486

Query: 266 ---SRNVSSWNTMITGYGQNGDIAQARK-LFDMMPQRDCVSWAAII 307
              + NV     ++   G+ G + +A++ ++D   + D V W A++
Sbjct: 487 YGMAANVKHSACIVDLLGRAGRLEEAQRFIYDSGFEDDPVLWRALL 532



 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)

Query: 332 SLNRST-FSCALSTCADIAALELGKQIHGQVVKTGY--ETGCFVGNALLGMYFKCGSIGE 388
           SLN  T  +  LS CA    L LG+ IH  ++  G+  +T  F+ N+L+ MY KC  I  
Sbjct: 37  SLNPLTNLTTLLSFCAKTKNLRLGQTIHASILINGFLNKTSSFL-NSLINMYSKCNQIQT 95

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHG----FGKQALMVFESMKTIGVKPDEITMVGVLS 444
           +  +F+    KD VSWN++I+ YA+ G    +G+   +V+  M   G    + T+  VL+
Sbjct: 96  SRFLFDNSSIKDNVSWNSIISAYAKLGTKTSYGEVFQLVYR-MHRFGYAFSDYTLSSVLN 154

Query: 445 ACSHA-------GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
           AC          G +  G  +   +  D++V  +    T ++D+  ++G L +A
Sbjct: 155 ACCFCVDDNCFYGRLIHG--FGIKLGLDFNVVVA----TALLDMYAKSGCLRDA 202



 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 21  SVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ 80
           +V  N  I  Y ++     AR+ F +  + D+VSW+VM+  Y ++    ++ RLF+ M  
Sbjct: 391 TVVKNTQICMYAKSGDIDSARNTFQETEKPDVVSWSVMICSYAQHGFAKESLRLFELMTV 450

Query: 81  KDVV----SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHN-----GRIE 131
             +V    +   +L+  +  G  DE    +  M     ++ N   +A + +     GR+E
Sbjct: 451 SGIVPNQITLLGVLTACSHGGLVDEGLGYYETMKKDYGMAANVKHSACIVDLLGRAGRLE 510

Query: 132 EACR-LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
           EA R ++DS  + + + W  L+G     K     +++ DK+
Sbjct: 511 EAQRFIYDSGFEDDPVLWRALLGACKVHKDTEMGKRIADKV 551


>Medtr6g022140.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:7700828-7697127 | 20130731
          Length = 774

 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 376/669 (56%), Gaps = 40/669 (5%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF---YQMPHK 112
           N ++  Y +  ++  +R LFD+   KD VSWN+++S YA+ G      EVF   Y+M H+
Sbjct: 81  NSLINMYSKCNQIQTSRFLFDNSSIKDNVSWNSIISAYAKLGTKTSYGEVFQLVYRM-HR 139

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
              +++    + V N      C   D          NC  G    R + G   KL     
Sbjct: 140 FGYAFSDYTLSSVLNA----CCFCVDD---------NCFYG----RLIHGFGIKLGLDF- 181

Query: 173 VRDVVSWNTMISGYAQDGDMSQAKNLFD--QSPHQDVFTWTAMVSGYVQNGML----DEA 226
             +VV    ++  YA+ G +  A  +F+      ++ F + AM++G+++ G+      EA
Sbjct: 182 --NVVVATALLDMYAKSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAREA 239

Query: 227 RTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITG 278
              F++M +     ++ +++++V   V +   ++ R++   +   ++       ++++  
Sbjct: 240 VRVFNEMRRMGVKCSKFTFSSVVKACVGNGDFEVGRQIHGQVLKNSLEGDEFVASSLVDL 299

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y   G+I    + F+M P+ D VSW + I+G  + G +E  L++F     DG  L+    
Sbjct: 300 YSFFGEIDDGLRCFEMTPKLDVVSWTSAIAGCVKNGKFENGLSLFYRFLADGRKLDEFIV 359

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           S  +  CAD+AA   G+QI G  +K G      V N  + MY K G I  A + F+  E+
Sbjct: 360 SSVMGACADMAAARTGEQIQGYALKFGVADFTVVKNTQICMYAKSGDIDSARNTFQETEK 419

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            DVVSW+ MI  YA+HGF K++L +FE M   G+ P++IT++GVL+ACSH GL+D G  Y
Sbjct: 420 PDVVSWSVMICSYAQHGFAKESLRLFELMTVSGIVPNQITLLGVLTACSHGGLVDEGLGY 479

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           + +M KDY +  + KH  C++DLLGRAGRLEEAQ  + +  FE     W ALLGA ++H 
Sbjct: 480 YETMKKDYGMAANVKHSACIVDLLGRAGRLEEAQRFIYDSGFEDDPVLWRALLGACKVHK 539

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           +TE+G++ A+ V ++EPH +  YVLL NLY   G+   A  +R  M+D GV+K  G SW+
Sbjct: 540 DTEMGKRIADKVIELEPHEAASYVLLYNLYNDVGKKKHALEVRKLMQDRGVKKEPGISWI 599

Query: 579 EVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM-LK 637
           EV N +H F V D  HP  + IY+ L EL  K++   +  + KL  +  E E+   + + 
Sbjct: 600 EVGNTVHTFLVDDRSHPISELIYSRLGELLAKIKEISF-DNEKLAFYISETEQSGTVRMS 658

Query: 638 YHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFN 697
           +HSEKLAV FGI+++P   P+RV+KNLRVC DCH  +K ISK+  R IILRD+ RFHHF 
Sbjct: 659 HHSEKLAVTFGIISLPISAPVRVMKNLRVCSDCHTTMKLISKVEKREIILRDAIRFHHFK 718

Query: 698 EGICSCGDY 706
           +G+CSC DY
Sbjct: 719 DGVCSCKDY 727



 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 126/278 (45%), Gaps = 13/278 (4%)

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG-- 314
           A  L     ++  S  N++I  Y +   I  +R LFD    +D VSW +IIS YA+ G  
Sbjct: 65  ASILINGFLNKTSSFLNSLINMYSKCNQIQTSRFLFDNSSIKDNVSWNSIISAYAKLGTK 124

Query: 315 -HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA--ALELGKQIHGQVVKTGYETGCF 371
             Y E   +   + R G + +  T S  L+ C          G+ IHG  +K G +    
Sbjct: 125 TSYGEVFQLVYRMHRFGYAFSDYTLSSVLNACCFCVDDNCFYGRLIHGFGIKLGLDFNVV 184

Query: 372 VGNALLGMYFKCGSIGEANDVFEG--IEEKDVVSWNTMIAGYARHGF----GKQALMVFE 425
           V  ALL MY K G + +A  VFEG  ++ K+   +N MIAG+ R G      ++A+ VF 
Sbjct: 185 VATALLDMYAKSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAREAVRVFN 244

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA 485
            M+ +GVK  + T   V+ AC   G  + G +    + K+ S+       + ++DL    
Sbjct: 245 EMRRMGVKCSKFTFSSVVKACVGNGDFEVGRQIHGQVLKN-SLEGDEFVASSLVDLYSFF 303

Query: 486 GRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
           G +++        P +    SW + +     +G  E G
Sbjct: 304 GEIDDGLRCFEMTP-KLDVVSWTSAIAGCVKNGKFENG 340



 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 152/346 (43%), Gaps = 48/346 (13%)

Query: 2   RNGHCDSALRVFN--TMPRRSSVSYNAMISGYLR------NARFSLARDLFDKMPQRDL- 52
           ++G    A+RVF    +  ++   YNAMI+G+LR      NAR   A  +F++M +  + 
Sbjct: 195 KSGCLRDAVRVFEGFDLKSKNDFMYNAMIAGFLRGGLCCENAR--EAVRVFNEMRRMGVK 252

Query: 53  ---VSWNVMLTGYVRNRRLGDARR-----LFDSMPQKDVVSWNAMLSGYAQNGYADEARE 104
               +++ ++   V N      R+     L +S+   + V+ ++++  Y+  G  D+   
Sbjct: 253 CSKFTFSSVVKACVGNGDFEVGRQIHGQVLKNSLEGDEFVA-SSLVDLYSFFGEIDDGLR 311

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
            F   P  + +SW   +A  V NG+ E    LF     +  ++    +  F+   ++GA 
Sbjct: 312 CFEMTPKLDVVSWTSAIAGCVKNGKFENGLSLF-----YRFLADGRKLDEFIVSSVMGAC 366

Query: 165 RKLFD------------KMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
             +              K  V D  V  NT I  YA+ GD+  A+N F ++   DV +W+
Sbjct: 367 ADMAAARTGEQIQGYALKFGVADFTVVKNTQICMYAKSGDIDSARNTFQETEKPDVVSWS 426

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMP-- 265
            M+  Y Q+G   E+   F+ M       N+I+   ++        +D     +E M   
Sbjct: 427 VMICSYAQHGFAKESLRLFELMTVSGIVPNQITLLGVLTACSHGGLVDEGLGYYETMKKD 486

Query: 266 ---SRNVSSWNTMITGYGQNGDIAQARK-LFDMMPQRDCVSWAAII 307
              + NV     ++   G+ G + +A++ ++D   + D V W A++
Sbjct: 487 YGMAANVKHSACIVDLLGRAGRLEEAQRFIYDSGFEDDPVLWRALL 532



 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)

Query: 332 SLNRST-FSCALSTCADIAALELGKQIHGQVVKTGY--ETGCFVGNALLGMYFKCGSIGE 388
           SLN  T  +  LS CA    L LG+ IH  ++  G+  +T  F+ N+L+ MY KC  I  
Sbjct: 37  SLNPLTNLTTLLSFCAKTKNLRLGQTIHASILINGFLNKTSSFL-NSLINMYSKCNQIQT 95

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHG----FGKQALMVFESMKTIGVKPDEITMVGVLS 444
           +  +F+    KD VSWN++I+ YA+ G    +G+   +V+  M   G    + T+  VL+
Sbjct: 96  SRFLFDNSSIKDNVSWNSIISAYAKLGTKTSYGEVFQLVYR-MHRFGYAFSDYTLSSVLN 154

Query: 445 ACSHA-------GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
           AC          G +  G  +   +  D++V  +    T ++D+  ++G L +A
Sbjct: 155 ACCFCVDDNCFYGRLIHG--FGIKLGLDFNVVVA----TALLDMYAKSGCLRDA 202



 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 21  SVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ 80
           +V  N  I  Y ++     AR+ F +  + D+VSW+VM+  Y ++    ++ RLF+ M  
Sbjct: 391 TVVKNTQICMYAKSGDIDSARNTFQETEKPDVVSWSVMICSYAQHGFAKESLRLFELMTV 450

Query: 81  KDVV----SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHN-----GRIE 131
             +V    +   +L+  +  G  DE    +  M     ++ N   +A + +     GR+E
Sbjct: 451 SGIVPNQITLLGVLTACSHGGLVDEGLGYYETMKKDYGMAANVKHSACIVDLLGRAGRLE 510

Query: 132 EACR-LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
           EA R ++DS  + + + W  L+G     K     +++ DK+
Sbjct: 511 EAQRFIYDSGFEDDPVLWRALLGACKVHKDTEMGKRIADKV 551


>Medtr5g006420.1 | organelle transcript processing protein, putative
           | HC | chr5:911890-915336 | 20130731
          Length = 726

 Score =  427 bits (1098), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 336/567 (59%), Gaps = 12/567 (2%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF------DQSPH 204
           L+  +   + +  AR LFDKM   D V+WN +I GY Q+G    A  LF      D  P 
Sbjct: 162 LIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKP- 220

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMAREL 260
            D      ++S     G L   RT  + +       +     A++  Y     MD+AR++
Sbjct: 221 -DSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279

Query: 261 FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
           ++ + S+++     M++GY + G +  AR +FD M +RD V W+A+ISGYA++   +EAL
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEAL 339

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            +F E+ +     ++ T    +S C+ + AL     IH  V ++G+     V NAL+ MY
Sbjct: 340 KLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMY 399

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
            KCG++ +A +VFE +  K+V+SW++MI  +A HG    A+ +F  MK + ++P+ +T +
Sbjct: 400 AKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFI 459

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
           GVL AC HAGL++ G + F SM  ++ ++P+ +HY CM+DL  RA  L +A +L+  MPF
Sbjct: 460 GVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPF 519

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
            P    WG+L+ A ++HG  ELGE AA+ + ++EP + G  V+LSN+YA   RW D G +
Sbjct: 520 APNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLI 579

Query: 561 RSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 620
           R  M   G+ K    S +E+ N++H F + D +H + D IY  L+E+  K++  GY  ST
Sbjct: 580 RKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPST 639

Query: 621 KLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKI 680
             +L D+EEE+K+ ++ +HSEKLAV +G+++      IR++KNLR+CEDCH+ +K +SK+
Sbjct: 640 SGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKV 699

Query: 681 VGRLIILRDSHRFHHFNEGICSCGDYW 707
               I++RD  RFHH + GICSC DYW
Sbjct: 700 YQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  139 bits (351), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 161/336 (47%), Gaps = 23/336 (6%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV--- 83
           +I+ Y    R   AR LFDKM   D V+WN+++ GY +N    DA RLF+ M   D+   
Sbjct: 162 LIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPD 221

Query: 84  -VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN-----GLLAAYVHNGRIEEACRLF 137
            V    +LS     G     R + ++    N  + +      L+  Y + G ++ A +++
Sbjct: 222 SVILCTVLSACGHAGNLSYGRTI-HEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIY 280

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKN 197
           D  S   LI    ++ G+ K  M+  AR +FD+M  RD+V W+ MISGYA+     +A  
Sbjct: 281 DGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALK 340

Query: 198 LFDQSPHQ----DVFTWTAMVSGYVQNGMLDEA---RTFFDQMPQKNEISY-NAMVAGYV 249
           LFD+   +    D  T  +++S     G L +A    T+ D+      +S  NA++  Y 
Sbjct: 341 LFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYA 400

Query: 250 QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC----VSWAA 305
           +   +  ARE+FE MP +NV SW++MI  +  +G+   A KLF  M + +     V++  
Sbjct: 401 KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIG 460

Query: 306 IISGYAQTGHYEEALNMFIE-IKRDGESLNRSTFSC 340
           ++      G  EE   +F   I   G S  R  + C
Sbjct: 461 VLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGC 496



 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 154/298 (51%), Gaps = 24/298 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A+I+ Y       LAR ++D +  + L+    ML+GY +   + DAR +FD M ++D+V
Sbjct: 261 TALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLV 320

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNGLLAAYVHNGRIEEA--CRLFD 138
            W+AM+SGYA++    EA ++F +M  K +    I+   +++A  H G + +A     + 
Sbjct: 321 CWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYV 380

Query: 139 SKSDW--ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
            +S +   L   N L+  + K   L  AR++F+ M  ++V+SW++MI+ +A  G+   A 
Sbjct: 381 DRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAI 440

Query: 197 NLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAG 247
            LF +    ++     T+  ++      G+++E    F  M  ++ IS     Y  MV  
Sbjct: 441 KLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDL 500

Query: 248 YVQSNKMDMARELFEAMP-SRNVSSWNTMIT-----GYGQNGDIAQARKLFDMMPQRD 299
           Y ++N +  A EL E MP + NV  W ++++     G  + G+ A A++L ++ P  D
Sbjct: 501 YCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFA-AKRLLELEPDHD 557



 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 180/412 (43%), Gaps = 92/412 (22%)

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV- 176
            GL+A Y    RI +A  LFD     + ++WN ++ G+ +      A +LF+ M   D+ 
Sbjct: 160 TGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMK 219

Query: 177 ------------------VSW--------------------NTMISGYAQDGDMSQAKNL 198
                             +S+                      +I+ YA  G M  A+ +
Sbjct: 220 PDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAR 258
           +D    + +   TAM+SGY + GM+ +AR  FDQM +++ + ++AM++GY +S++   A 
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEAL 339

Query: 259 ELFEAMPS---------------------------------------RNVSSWNTMITGY 279
           +LF+ M                                         R +S  N +I  Y
Sbjct: 340 KLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMY 399

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + G++ +AR++F+ MP+++ +SW+++I+ +A  G+ + A+ +F  +K      N  TF 
Sbjct: 400 AKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFI 459

Query: 340 CALSTCADIAALELGKQIHGQVVK------TGYETGCFVGNALLGMYFKCGSIGEANDVF 393
             L  C     +E G+++   ++       T    GC V      +Y +   + +A ++ 
Sbjct: 460 GVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMV-----DLYCRANFLRKAIELI 514

Query: 394 EGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
           E +    +V+ W ++++    H  G+  L  F + + + ++PD    + VLS
Sbjct: 515 ETMPFAPNVIIWGSLMSACQVH--GEAELGEFAAKRLLELEPDHDGALVVLS 564



 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 9/202 (4%)

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
           H   A+N F        +L+R +F   L   + ++A   G +IHG   K G+    F+  
Sbjct: 109 HNLRAINAF--------ALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQT 160

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
            L+ MY  C  I +A  +F+ +   D V+WN +I GY ++G    AL +FE M++  +KP
Sbjct: 161 GLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKP 220

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
           D + +  VLSAC HAG +  G    +   KD      S   T +I++    G ++ A+ +
Sbjct: 221 DSVILCTVLSACGHAGNLSYG-RTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279

Query: 495 MRNMPFEPPAASWGALLGASRI 516
              +  +    S   L G +++
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKL 301



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 117/272 (43%), Gaps = 59/272 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  D A ++++ +  +  +   AM+SGY +      AR +FD+M +RDLV W+ M++GY 
Sbjct: 271 GAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYA 330

Query: 64  RNRRLGDARRLFDSMPQKDVV----------------------SW--------------- 86
            + +  +A +LFD M QK  V                      +W               
Sbjct: 331 ESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALS 390

Query: 87  --NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
             NA++  YA+ G   +AREVF  MP KN ISW+ ++ A+  +G  + A +LF    +  
Sbjct: 391 VNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450

Query: 145 L---------ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVS-----WNTMISGYAQDG 190
           +         + + C   G V+        KLF  M     +S     +  M+  Y +  
Sbjct: 451 IEPNGVTFIGVLYACGHAGLVEE-----GEKLFSSMINEHGISPTREHYGCMVDLYCRAN 505

Query: 191 DMSQAKNLFDQSPH-QDVFTWTAMVSGYVQNG 221
            + +A  L +  P   +V  W +++S    +G
Sbjct: 506 FLRKAIELIETMPFAPNVIIWGSLMSACQVHG 537


>Medtr1g071240.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:31582853-31578503 | 20130731
          Length = 1126

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 264/837 (31%), Positives = 413/837 (49%), Gaps = 136/837 (16%)

Query: 4   GHCDS---ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------------- 47
           G C S   A++VF+ M  R+  ++NAMI   +   R+  A +L+ +M             
Sbjct: 93  GKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP 152

Query: 48  ---------PQRDL-----------------VSWNVMLTGYVRNRRLGDARRLFDS--MP 79
                     +R L                    N ++  Y +   LG AR LFDS  M 
Sbjct: 153 CVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLME 212

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISW------------------ 117
           + D VSWN+++S +   G + EA  +F +M       N  ++                  
Sbjct: 213 KDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRG 272

Query: 118 -----------------NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKM 160
                            N L+A Y + G++E+A R+F S    + +SWN L+ G V+  M
Sbjct: 273 IHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDM 332

Query: 161 LGAARKLFDKMH----VRDVVSWNTMISG-------------------YAQDGDMSQAKN 197
              A   F  M       D VS   MI+                    +  D +M    +
Sbjct: 333 YSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNS 392

Query: 198 L----------------FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY 241
           L                F+  P +D+ +WT +++GY QN    +A     ++ Q  ++  
Sbjct: 393 LIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKV-QLEKMDV 451

Query: 242 NAMVAGYV-------QSNKMDMARELFEAMPS---RNVSSWNTMITGYGQNGDIAQARKL 291
           + M+ G +       +S K+   +E+   +      ++   N ++  YG+   +  AR +
Sbjct: 452 DPMMIGSILLACSGLKSEKL--IKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHV 509

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAAL 351
           F+ +  +D VSW ++I+     G   EAL +F  +       +  T    L   A +++L
Sbjct: 510 FESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSL 569

Query: 352 ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGY 411
           + GK+IHG +++ G+     + N+L+ MY +CG++  A ++F  ++++D++ W +MI   
Sbjct: 570 KKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINAN 629

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
             HG GK A+ +F  M    V PD IT + +L ACSH+GL+  G ++F  M  +Y + P 
Sbjct: 630 GMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPW 689

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVF 531
            +HY C++DLL R+  LEEA   +RNMP EP A  W ALLGA RIH N +LGE AA+ + 
Sbjct: 690 PEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLL 749

Query: 532 KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGD 591
           ++   NSG YVL+SN +AA GRW D   +RS M+   ++K  G SW+EV+NKIH F   D
Sbjct: 750 QLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARD 809

Query: 592 CFHPEKDRIYAFLEELDLKMRRE-GYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGIL 650
             HP+ + IY  L +    ++ + GY + TKLV HDV EEEK  ML  HSE+LA+ +G+L
Sbjct: 810 KSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLL 869

Query: 651 TIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
               G  +R+ KNLR+C+DCH   K  S+I  R +++RD+ RFHHF  G+CSCGD+W
Sbjct: 870 VTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 177/373 (47%), Gaps = 18/373 (4%)

Query: 93  YAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISW 148
           Y + G   +A +VF +M  +   +WN ++ A V  GR  EA  L+          +  ++
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTF 151

Query: 149 NCLM---GGFVKRKMLGAARKLFDKM-HVRDVVSWNTMISGYAQDGDMSQAKNLFDQS-- 202
            C++   G F +R++      +  K  +   V   N +I+ YA+ GD+  A+ LFD    
Sbjct: 152 PCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLM 211

Query: 203 PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMAR 258
              D  +W +++S +V  G   EA + F +M     + N  ++ + +        + + R
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 259 ELFEAMPSRN----VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
            +   +   N    V   N +I  Y   G +  A ++F  M  +DCVSW  ++SG  Q  
Sbjct: 272 GIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQND 331

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
            Y +A+N F +++  G+  ++ +    ++     A L  G ++H   +K G ++   +GN
Sbjct: 332 MYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGN 391

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
           +L+ MY KC  +      FE + EKD++SW T+IAGYA++     AL +   ++   +  
Sbjct: 392 SLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDV 451

Query: 435 DEITMVGVLSACS 447
           D + +  +L ACS
Sbjct: 452 DPMMIGSILLACS 464



 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 16/241 (6%)

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           YG+ G    A K+FD M +R   +W A+I      G Y EA+ ++ E++  G SL+  TF
Sbjct: 92  YGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTF 151

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG--I 396
            C L  C       LG +IHG  VK GY    FV NAL+ MY KCG +G A  +F+   +
Sbjct: 152 PCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLM 211

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGT 456
           E+ D VSWN++I+ +   G   +AL +F  M+ +GV+ +  T V  L AC     I  G 
Sbjct: 212 EKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGR 271

Query: 457 EYFYSMNKDYSVTPSSKHYT------CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
                    ++V   S H+T       +I +    G++E+A+ + ++M F+    SW  L
Sbjct: 272 GI-------HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTL 323

Query: 511 L 511
           L
Sbjct: 324 L 324



 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVF 393
           +  +S AL  CA   AL  G+Q+H   +KT  Y    F+    + MY KCGS  +A  VF
Sbjct: 46  QQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVF 105

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
           + + E+ + +WN MI      G   +A+ +++ M+ +GV  D  T   VL AC
Sbjct: 106 DKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158


>Medtr1g040535.1 | pentatricopeptide (PPR) repeat protein | LC |
           chr1:15006779-15004629 | 20130731
          Length = 675

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 259/712 (36%), Positives = 375/712 (52%), Gaps = 84/712 (11%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK----DVVSWNAMLSGYAQ 95
           A  ++++M  +D+V+WN M+TGY +N R  DA  LF  M ++    DVV+W++++SGYAQ
Sbjct: 4   ASKVYERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEIIELDVVTWSSVISGYAQ 63

Query: 96  NGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRI----EEACRLF---------D 138
            G+  EA +VF +M       N +    LL+A    G +    E  C            D
Sbjct: 64  RGFGCEAMDVFRKMCGCRCRPNVVKLMSLLSACASVGALLHGKETHCYSVKFILKGEHND 123

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--HVRDVVSWNTMISGYAQDGDMSQAK 196
              D  +I  N L+  + K K L  AR +FD++    RDVV+W  MI GYAQ GD + A 
Sbjct: 124 DNDDLAVI--NALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHAL 181

Query: 197 NLF------DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI------SYNAM 244
            LF      D     + FT + ++    +   L   +     + +++ I        N +
Sbjct: 182 QLFSEMFKFDNCIVPNDFTISCVLMSCARLSALIFGKHIHAYVLRRSLIYSDVLFVANCL 241

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV--- 301
           +  Y +S  +D A+ +F++M  RN  SW +++TGYG +G    A ++FD M +       
Sbjct: 242 IDMYSKSGDVDTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRVFDEMRKEALSFGN 301

Query: 302 --SWAAIISGYAQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQI 357
             SW   + G A       AL +F E+ +    +  N  T SC L +CA ++AL+ GKQI
Sbjct: 302 GGSWNRFVXGDAN-----HALQLFSEMFKIDNCIVPNDFTISCVLMSCARLSALKFGKQI 356

Query: 358 HGQVVKTGYETG--CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
           H  V++  +      FV N L+ MY K G +  A  VF+ + +++ VSW +++ GY  HG
Sbjct: 357 HAHVLRRSHSNSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG 416

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY 475
             + A  VF+ M+   +  D IT + VL AC                          KHY
Sbjct: 417 RSEDAFRVFDEMRKEALVLDGITFLVVLYAC--------------------------KHY 450

Query: 476 TCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEP 535
            CM+DLLGRAGRL EA  L+ +MP EP    W ALL A RIH N EL E AA+ + +++ 
Sbjct: 451 ACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKA 510

Query: 536 HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHP 595
            N G Y LLSN+YA + RW D   +   M+  G++K+ G+SWV+ +  +  F VGD  H 
Sbjct: 511 DNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHL 570

Query: 596 EKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG 655
           +  +IY  L +L  +++           LHDV++EEK   L  HSEKLA+A+ ILT+P G
Sbjct: 571 QSQKIYETLADLIKRIK-------ANFSLHDVDDEEKGDQLSEHSEKLALAYAILTLPPG 623

Query: 656 RPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            PIR+ KNLR+C D H+AI +IS IV   IILRDS RFH F  G CSC  YW
Sbjct: 624 APIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 675



 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 199/449 (44%), Gaps = 87/449 (19%)

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----DVVSWNTMISG 185
           +E+A ++++     ++++WN ++ G+ +      A  LF KM       DVV+W+++ISG
Sbjct: 1   MEDASKVYERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEIIELDVVTWSSVISG 60

Query: 186 YAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGML---DEARTFFDQMPQKNE 238
           YAQ G   +A ++F +        +V    +++S     G L    E   +  +   K E
Sbjct: 61  YAQRGFGCEAMDVFRKMCGCRCRPNVVKLMSLLSACASVGALLHGKETHCYSVKFILKGE 120

Query: 239 --------ISYNAMVAGYVQSNKMDMARELFEAM--PSRNVSSWNTMITGYGQNGDIAQA 288
                      NA++  Y +   +++AR +F+ +    R+V +W  MI GY Q GD   A
Sbjct: 121 HNDDNDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHA 180

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
            +LF  M + D                     N  +         N  T SC L +CA +
Sbjct: 181 LQLFSEMFKFD---------------------NCIVP--------NDFTISCVLMSCARL 211

Query: 349 AALELGKQIHGQVVKTG--YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNT 406
           +AL  GK IH  V++    Y    FV N L+ MY K G +  A  VF+ + +++ +SW +
Sbjct: 212 SALIFGKHIHAYVLRRSLIYSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAISWTS 271

Query: 407 MIAGYARHGFGKQALMVFESMK----TIG-----------------------------VK 433
           ++ GY  HG  + A  VF+ M+    + G                             + 
Sbjct: 272 LLTGYGMHGCSEDAFRVFDEMRKEALSFGNGGSWNRFVXGDANHALQLFSEMFKIDNCIV 331

Query: 434 PDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           P++ T+  VL +C+    +  G + + + + + +S +       C+ID+  ++G ++ AQ
Sbjct: 332 PNDFTISCVLMSCARLSALKFGKQIHAHVLRRSHSNSDVLFVANCLIDMYSKSGDVDTAQ 391

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTE 521
            +  +M  +  A SW +LL    +HG +E
Sbjct: 392 VVFDSMS-KRNAVSWTSLLTGYGMHGRSE 419



 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +I  Y ++     A+ +FD M +R+ +SW  +LTGY  +    DA R+FD M ++ + 
Sbjct: 239 NCLIDMYSKSGDVDTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRVFDEMRKEALS 298

Query: 85  -----SWNAMLSGYAQNGYADEAREVFYQM--------PHKNAISWNGL----LAAYVHN 127
                SWN  +      G A+ A ++F +M        P+   IS   +    L+A    
Sbjct: 299 FGNGGSWNRFVX-----GDANHALQLFSEMFKIDNCIVPNDFTISCVLMSCARLSALKFG 353

Query: 128 GRIE-EACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGY 186
            +I     R   S SD   ++ NCL+  + K   +  A+ +FD M  R+ VSW ++++GY
Sbjct: 354 KQIHAHVLRRSHSNSDVLFVA-NCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGY 412

Query: 187 AQDGDMSQAKNLFDQSPHQDVFT--------------WTAMVSGYVQNGMLDEARTFFDQ 232
              G    A  +FD+   + +                +  MV    + G L EA    + 
Sbjct: 413 GMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACKHYACMVDLLGRAGRLGEAMRLIND 472

Query: 233 MP 234
           MP
Sbjct: 473 MP 474


>Medtr4g011570.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:2848688-2851472 | 20130731
          Length = 873

 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/735 (34%), Positives = 384/735 (52%), Gaps = 39/735 (5%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWN 56
           ++ G+   A  VF  MP R+  S+N ++ GY +   F  A +L+D+M     + D+ ++ 
Sbjct: 145 VKFGNLVDAWYVFGRMPERNLFSWNVLVGGYAKGGFFDEALNLYDRMLWVGVRPDVYTFP 204

Query: 57  VML------TGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
            +L         V+ R +      F      DV+  NA+++ YA+ G  D AR VF +MP
Sbjct: 205 CVLRTCGGVPDLVKGREIHVHVLRFGFESDVDVI--NALITMYAKCGDIDTARLVFDKMP 262

Query: 111 HKNAISWNGLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARK 166
            K+ ISWN ++A    NG   E     CR+ +   D +L++    M   +    L    +
Sbjct: 263 KKDRISWNAMIAGCFENGECLEGLTLFCRMIEYPVDPDLMT----MTSVITACELIGDER 318

Query: 167 LFDKMH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
           L  ++H         RD   +N++I  Y+  G + +A+ +F Q+  +DV  WTAM+SGY 
Sbjct: 319 LGREIHGYVMRTKFSRDPSVYNSLIQMYSSVGLVEEAEKVFSQTECRDVVMWTAMISGYE 378

Query: 219 QNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW-- 272
            N M  +A   +  M  +    +EI+   +++       +D    L E      +  +  
Sbjct: 379 NNLMHQKALETYKMMEAEGIIPDEITIGVVLSACSCLCDLDTGMNLHEKAKKTGLIFYVI 438

Query: 273 --NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
             N +I  Y +   I +A ++F  +  ++ +SW +II G        +AL  F E+ R  
Sbjct: 439 VANKLIDMYAKCKCIDKALEVFHSIRDKNIISWTSIILGLRINNRCYDALFFFKEMMRR- 497

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
           +  N  T  C LS CA I A   GK+IH   ++TG     ++ NA+L MY +CG +  A 
Sbjct: 498 QKPNWVTLVCVLSACARIGAFTCGKEIHAYALRTGVSDDGYMPNAVLDMYVRCGRMEYAW 557

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
             F  I++ DV +WN ++ GYA  G G  A  +F  M    V P+E+T + +L ACS +G
Sbjct: 558 KQFFSIDQ-DVSTWNILLTGYAERGKGTLATELFRRMLESNVVPNEVTFISILCACSRSG 616

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           ++  G EY+ SM   YS+ P+ KHY C++DLLGRAG+LE+A + ++ +P +P  A WGAL
Sbjct: 617 MVAEGLEYYDSMKYKYSIKPNLKHYACVVDLLGRAGKLEDAYEFIQKIPMKPDPAVWGAL 676

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           L A RIH   ELGE AA+ +F  +  + G Y+LLSNLYA +  W     +R  MR  G+ 
Sbjct: 677 LNACRIHRRVELGELAAKNIFHDDTTSVGYYILLSNLYADNNIWDKVAEVRKMMRQNGII 736

Query: 571 KVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 630
              G SWVE +  +H F  GD FHP+   I A LE    KM+  G +   +    D+ E 
Sbjct: 737 VDPGCSWVENKGTVHAFLSGDNFHPQIKEINALLERFYEKMKEAG-IQGPESSHMDIMEA 795

Query: 631 EKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDS 690
            K  +   HSE+ A+ FG++    G PI V KNL +C+ CHN +K ISK V R I +RD+
Sbjct: 796 SKADIFCGHSERFAIGFGLINSAPGMPIWVTKNLYMCQSCHNTVKFISKEVRREISVRDA 855

Query: 691 HRFHHFNEGICSCGD 705
            RFHHF  GICSC D
Sbjct: 856 ERFHHFKGGICSCMD 870



 Score =  176 bits (445), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 228/497 (45%), Gaps = 52/497 (10%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM------ 109
           NV+L+ +V+   L DA  +F  MP++++ SWN ++ GYA+ G+ DEA  ++ +M      
Sbjct: 138 NVLLSMFVKFGNLVDAWYVFGRMPERNLFSWNVLVGGYAKGGFFDEALNLYDRMLWVGVR 197

Query: 110 ----PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
                    +   G +   V    I      F  +SD ++I  N L+  + K   +  AR
Sbjct: 198 PDVYTFPCVLRTCGGVPDLVKGREIHVHVLRFGFESDVDVI--NALITMYAKCGDIDTAR 255

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNG 221
            +FDKM  +D +SWN MI+G  ++G+  +   LF    +     D+ T T++++     G
Sbjct: 256 LVFDKMPKKDRISWNAMIAGCFENGECLEGLTLFCRMIEYPVDPDLMTMTSVITACELIG 315

Query: 222 MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ 281
             DE                   + GYV   K            SR+ S +N++I  Y  
Sbjct: 316 --DE--------------RLGREIHGYVMRTKF-----------SRDPSVYNSLIQMYSS 348

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
            G + +A K+F     RD V W A+ISGY     +++AL  +  ++ +G   +  T    
Sbjct: 349 VGLVEEAEKVFSQTECRDVVMWTAMISGYENNLMHQKALETYKMMEAEGIIPDEITIGVV 408

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           LS C+ +  L+ G  +H +  KTG      V N L+ MY KC  I +A +VF  I +K++
Sbjct: 409 LSACSCLCDLDTGMNLHEKAKKTGLIFYVIVANKLIDMYAKCKCIDKALEVFHSIRDKNI 468

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-YFY 460
           +SW ++I G   +     AL  F+ M     KP+ +T+V VLSAC+  G    G E + Y
Sbjct: 469 ISWTSIILGLRINNRCYDALFFFKEMMR-RQKPNWVTLVCVLSACARIGAFTCGKEIHAY 527

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT 520
           ++     V+        ++D+  R GR+E A    +    +   ++W  LL      G  
Sbjct: 528 ALRT--GVSDDGYMPNAVLDMYVRCGRMEYAWK--QFFSIDQDVSTWNILLTGYAERGK- 582

Query: 521 ELGEKAAEMVFKMEPHN 537
             G  A E+  +M   N
Sbjct: 583 --GTLATELFRRMLESN 597



 Score =  143 bits (360), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 159/334 (47%), Gaps = 35/334 (10%)

Query: 221 GMLDEARTFFDQMPQKN----EISYNAMVA---------------GYVQSNKMDMARELF 261
           G LD A ++ + M +      E SY A+V                 Y+  +KM       
Sbjct: 76  GNLDSAMSYLESMHELKISVEEDSYIALVRLCEWKRARKEGSRVWSYITKSKM------- 128

Query: 262 EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
             M   +V   N +++ + + G++  A  +F  MP+R+  SW  ++ GYA+ G ++EALN
Sbjct: 129 --MTHLSVKLGNVLLSMFVKFGNLVDAWYVFGRMPERNLFSWNVLVGGYAKGGFFDEALN 186

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
           ++  +   G   +  TF C L TC  +  L  G++IH  V++ G+E+   V NAL+ MY 
Sbjct: 187 LYDRMLWVGVRPDVYTFPCVLRTCGGVPDLVKGREIHVHVLRFGFESDVDVINALITMYA 246

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
           KCG I  A  VF+ + +KD +SWN MIAG   +G   + L +F  M    V PD +TM  
Sbjct: 247 KCGDIDTARLVFDKMPKKDRISWNAMIAGCFENGECLEGLTLFCRMIEYPVDPDLMTMTS 306

Query: 442 VLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
           V++AC   G    G E + Y M   +S  PS   Y  +I +    G +EEA+ +      
Sbjct: 307 VITACELIGDERLGREIHGYVMRTKFSRDPSV--YNSLIQMYSSVGLVEEAEKVFSQTEC 364

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
                 W A++     + N  + +KA E    ME
Sbjct: 365 R-DVVMWTAMISG---YENNLMHQKALETYKMME 394


>Medtr8g089960.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:37592279-37594828 | 20130731
          Length = 572

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/570 (37%), Positives = 328/570 (57%), Gaps = 34/570 (5%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q+D+   N+ +T   R   +  AR+LFD   QKD+V++N+ML+ Y QNG+   ++ +F  
Sbjct: 26  QQDVYFANLNITALSRAGNITAARQLFDKTSQKDIVTYNSMLTAYWQNGFLQHSKSLFNS 85

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           +P KN +SWN ++ A + N  I +A   F +  +  + S+N +M GFVK   +  A+K+F
Sbjct: 86  IPIKNIVSWNSIITACIQNDNINDAFSYFTAMPEKNVASYNAMMSGFVKMGRVEEAKKVF 145

Query: 169 DKMHVRDVVSWNTMISGYAQ---DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
           +++   +VVS+  MI GY +      + +A+ LFD  P ++  +WT M+SG V+NG+ +E
Sbjct: 146 EEIPRPNVVSYTVMIDGYMKMEGGSGIKRARALFDAMPSRNEVSWTVMISGLVENGLHEE 205

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDI 285
           A   F +MPQKN +++ AM+ G+ +  K+D A  LF+ +  ++ + WN MITG+ QN   
Sbjct: 206 AWEVFVRMPQKNVVAFTAMITGFCKQGKIDEAWNLFQQIRCKDRACWNIMITGFAQN--- 262

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
                                       G  EEALN+F ++ R G   +  TF    + C
Sbjct: 263 ----------------------------GRGEEALNLFSQMVRTGMQPDDLTFVSLFTAC 294

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
           A +A L+ G+Q +   +K G  +   V NAL+ MY KCG I  +   F+ I   D+VSWN
Sbjct: 295 ASLALLDEGRQTNALAIKHGLNSDLSVSNALVTMYSKCGEIVISELAFDQISHPDIVSWN 354

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD 465
           T+IA +A+HG   +A   F+ M T GV PD IT + +LSAC  AG +D     F  M   
Sbjct: 355 TIIAAFAQHGLYDRARYYFDHMVTAGVTPDGITFLNLLSACCRAGKVDETVNLFDLMVHK 414

Query: 466 YSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEK 525
           Y + P S+HY+C++D++ RAG+L  A  +++ MPFE  A+ WGA L    IH N +LGE 
Sbjct: 415 YGILPRSEHYSCVVDVMSRAGQLLRACKVIQEMPFEADASIWGAFLVGCNIHSNVKLGEL 474

Query: 526 AAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIH 585
           AA  +  ++P+NSG YV++SN+YAA+G+W D   MR  M++ G++K T YSW+++ NK+ 
Sbjct: 475 AARSILNLDPYNSGAYVMMSNIYAAAGKWKDVNRMRVLMKEQGIKKQTAYSWMQIGNKLQ 534

Query: 586 KFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
            F  GD  HP  D I+     + L M+ +G
Sbjct: 535 CFVGGDPSHPNIDDIHDASMMITLHMKAKG 564



 Score =  196 bits (498), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 194/379 (51%), Gaps = 44/379 (11%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A R+F+T  ++     N  I+   R    + AR LFDK  Q+D+V++N MLT Y +N  L
Sbjct: 19  ATRLFST--QQDVYFANLNITALSRAGNITAARQLFDKTSQKDIVTYNSMLTAYWQNGFL 76

Query: 69  GDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNG 128
             ++ LF+S+P K++VSWN++++   QN   ++A   F  MP KN  S+N +++ +V  G
Sbjct: 77  QHSKSLFNSIPIKNIVSWNSIITACIQNDNINDAFSYFTAMPEKNVASYNAMMSGFVKMG 136

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRK---MLGAARKLFDKMHVRDVVSWNTMISG 185
           R+EEA ++F+      ++S+  ++ G++K +    +  AR LFD M  R+ VSW  MISG
Sbjct: 137 RVEEAKKVFEEIPRPNVVSYTVMIDGYMKMEGGSGIKRARALFDAMPSRNEVSWTVMISG 196

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMV 245
             ++G   +A  +F + P ++V  +TAM++G+ + G +DEA   F Q+  K+   +N M+
Sbjct: 197 LVENGLHEEAWEVFVRMPQKNVVAFTAMITGFCKQGKIDEAWNLFQQIRCKDRACWNIMI 256

Query: 246 AGYVQSNKMDMARELFEAMP---------------------------------------S 266
            G+ Q+ + + A  LF  M                                        +
Sbjct: 257 TGFAQNGRGEEALNLFSQMVRTGMQPDDLTFVSLFTACASLALLDEGRQTNALAIKHGLN 316

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
            ++S  N ++T Y + G+I  +   FD +   D VSW  II+ +AQ G Y+ A   F  +
Sbjct: 317 SDLSVSNALVTMYSKCGEIVISELAFDQISHPDIVSWNTIIAAFAQHGLYDRARYYFDHM 376

Query: 327 KRDGESLNRSTFSCALSTC 345
              G + +  TF   LS C
Sbjct: 377 VTAGVTPDGITFLNLLSAC 395



 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 182/365 (49%), Gaps = 61/365 (16%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++N + + A   F  MP ++  SYNAM+SG+++  R   A+ +F+++P+ ++VS+ VM+ 
Sbjct: 102 IQNDNINDAFSYFTAMPEKNVASYNAMMSGFVKMGRVEEAKKVFEEIPRPNVVSYTVMID 161

Query: 61  GYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           GY++      +  AR LFD+MP ++ VSW  M+SG  +NG  +EA EVF +MP KN +++
Sbjct: 162 GYMKMEGGSGIKRARALFDAMPSRNEVSWTVMISGLVENGLHEEAWEVFVRMPQKNVVAF 221

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
             ++  +   G+I+EA              WN                 LF ++  +D  
Sbjct: 222 TAMITGFCKQGKIDEA--------------WN-----------------LFQQIRCKDRA 250

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
            WN MI+G+AQ+G   +A NLF Q        D  T+ ++ +      +LDE R      
Sbjct: 251 CWNIMITGFAQNGRGEEALNLFSQMVRTGMQPDDLTFVSLFTACASLALLDEGR------ 304

Query: 234 PQKNEISY-----------NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQN 282
            Q N ++            NA+V  Y +  ++ ++   F+ +   ++ SWNT+I  + Q+
Sbjct: 305 -QTNALAIKHGLNSDLSVSNALVTMYSKCGEIVISELAFDQISHPDIVSWNTIIAAFAQH 363

Query: 283 GDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST- 337
           G   +AR  FD M       D +++  ++S   + G  +E +N+F  +      L RS  
Sbjct: 364 GLYDRARYYFDHMVTAGVTPDGITFLNLLSACCRAGKVDETVNLFDLMVHKYGILPRSEH 423

Query: 338 FSCAL 342
           +SC +
Sbjct: 424 YSCVV 428


>Medtr3g012530.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:3530268-3532784 | 20130731
          Length = 696

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/621 (36%), Positives = 359/621 (57%), Gaps = 22/621 (3%)

Query: 108 QMPHKNAISWNGLLA---AYVHNGRIEEACRLFD------SKSDWELISWNCLMGGFVKR 158
           Q+  K ++S +GL A     V   +  EA  LF+      ++S     +++ L+   ++ 
Sbjct: 77  QIIKKRSLSPSGLCAQIEKLVLCNKFMEAMELFEMLELENAESYVGASTYDALISACIRL 136

Query: 159 KMLGAARKLFDKMHVR----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMV 214
           + +   +++F+ M       D+   N ++  + Q   M  A+  FD  P +D  +W  M+
Sbjct: 137 RSIIGVKRVFNYMKNSGFELDLYMMNRVLFMHVQCNLMRDARTWFDDMPERDSSSWMTMI 196

Query: 215 SGYVQNGMLDEARTFF----DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS 270
            G V +    EA   F    ++       ++ AMV    + + +++ R++   +  R V+
Sbjct: 197 GGLVDSRNYSEAFELFLCMWEEFNNGKSRTFAAMVRASARLDCIEVGRQIHTCILKRAVN 256

Query: 271 SWN----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
                   +I  Y + G+I  AR +FD MPQ+  V W  II+GYA  G  EEAL ++ ++
Sbjct: 257 GDPFVDCALIDMYSKCGNIEDARCVFDQMPQKTTVGWNTIIAGYAFRGFSEEALGIYYKM 316

Query: 327 KRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSI 386
           +  G  ++  T S  ++ CA +A+LE GKQ H  +V+ G+ T     +AL+  Y K G +
Sbjct: 317 RDSGTKIDHFTISIVITICARLASLEHGKQGHAALVRRGFGTDLVANSALVNFYSKWGRM 376

Query: 387 GEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
             A  VF+ +  K+++SWN +IAGY  HG G++A+ +FE M    + P+ +T + VLSAC
Sbjct: 377 ENARHVFDKMHRKNIISWNALIAGYGHHGRGEEAIEMFEKMLQENMTPNHVTFLAVLSAC 436

Query: 447 SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS 506
           S++GL +RG E F SM++D+++ P + HY CMI+LLGR G L+EA  L+RN PF P    
Sbjct: 437 SYSGLSERGWEIFQSMSQDHNIKPRAMHYACMIELLGREGLLDEAVALIRNAPFPPTLNM 496

Query: 507 WGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRD 566
           W ALL A R+H N ELG+ AAE ++ MEP     YV+L N+Y +SG+  +A ++   ++ 
Sbjct: 497 WAALLIACRMHKNLELGKFAAEKLYGMEPEKLCNYVMLLNIYNSSGKLKEAADVLQTLKR 556

Query: 567 VGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHD 626
            G++ +  Y+W+EV  + H F  GD  H +  +IY  ++ L +++ R GYV   + +L D
Sbjct: 557 KGLRMLPAYTWIEVNKQPHAFLCGDKSHKQTKKIYKKVDSLMVEISRHGYVMEKETLLPD 616

Query: 627 VEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLII 686
           V+EEE + ++KYHSEKLA+AFGI+  P   P+++ +  RVC DCHNAIK I+ + GR I+
Sbjct: 617 VDEEE-QRVIKYHSEKLAIAFGIMNTPDWLPLQITQRHRVCGDCHNAIKLITLVTGREIV 675

Query: 687 LRDSHRFHHFNEGICSCGDYW 707
           LRD+ RFH F  G CSCG+YW
Sbjct: 676 LRDASRFHRFKNGSCSCGNYW 696



 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 66/381 (17%)

Query: 13  FNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR---------------------- 50
           F+ MP R S S+  MI G + +  +S A +LF  M +                       
Sbjct: 181 FDDMPERDSSSWMTMIGGLVDSRNYSEAFELFLCMWEEFNNGKSRTFAAMVRASARLDCI 240

Query: 51  -----------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGY 93
                            D      ++  Y +   + DAR +FD MPQK  V WN +++GY
Sbjct: 241 EVGRQIHTCILKRAVNGDPFVDCALIDMYSKCGNIEDARCVFDQMPQKTTVGWNTIIAGY 300

Query: 94  AQNGYADEAREVFYQMPHKNA----------ISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           A  G+++EA  ++Y+M               I+    LA+  H  +   A  L       
Sbjct: 301 AFRGFSEEALGIYYKMRDSGTKIDHFTISIVITICARLASLEHGKQGHAA--LVRRGFGT 358

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP 203
           +L++ + L+  + K   +  AR +FDKMH ++++SWN +I+GY   G   +A  +F++  
Sbjct: 359 DLVANSALVNFYSKWGRMENARHVFDKMHRKNIISWNALIAGYGHHGRGEEAIEMFEKML 418

Query: 204 HQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKM 254
            +++     T+ A++S    +G+ +     F  M Q + I      Y  M+    +   +
Sbjct: 419 QENMTPNHVTFLAVLSACSYSGLSERGWEIFQSMSQDHNIKPRAMHYACMIELLGREGLL 478

Query: 255 DMARELFEAMP-SRNVSSWNTMITGYGQNGDIA----QARKLFDMMPQRDCVSWAAIISG 309
           D A  L    P    ++ W  ++     + ++      A KL+ M P++ C ++  +++ 
Sbjct: 479 DEAVALIRNAPFPPTLNMWAALLIACRMHKNLELGKFAAEKLYGMEPEKLC-NYVMLLNI 537

Query: 310 YAQTGHYEEALNMFIEIKRDG 330
           Y  +G  +EA ++   +KR G
Sbjct: 538 YNSSGKLKEAADVLQTLKRKG 558



 Score =  103 bits (256), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 28/333 (8%)

Query: 23  SYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNVMLTGYVRNRRLGDARRLFDSM 78
           +Y+A+IS  +R       + +F+ M     + DL   N +L  +V+   + DAR  FD M
Sbjct: 125 TYDALISACIRLRSIIGVKRVFNYMKNSGFELDLYMMNRVLFMHVQCNLMRDARTWFDDM 184

Query: 79  PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHN---------GR 129
           P++D  SW  M+ G   +    EA E+F  M  +     +   AA V           GR
Sbjct: 185 PERDSSSWMTMIGGLVDSRNYSEAFELFLCMWEEFNNGKSRTFAAMVRASARLDCIEVGR 244

Query: 130 IEEACRLFDSKSDWELISWNC-LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
               C L  + +    +  +C L+  + K   +  AR +FD+M  +  V WNT+I+GYA 
Sbjct: 245 QIHTCILKRAVNGDPFV--DCALIDMYSKCGNIEDARCVFDQMPQKTTVGWNTIIAGYAF 302

Query: 189 DGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEIS 240
            G   +A  ++    D     D FT + +++   +   L+  +     + ++    + ++
Sbjct: 303 RGFSEEALGIYYKMRDSGTKIDHFTISIVITICARLASLEHGKQGHAALVRRGFGTDLVA 362

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
            +A+V  Y +  +M+ AR +F+ M  +N+ SWN +I GYG +G   +A ++F+ M Q + 
Sbjct: 363 NSALVNFYSKWGRMENARHVFDKMHRKNIISWNALIAGYGHHGRGEEAIEMFEKMLQENM 422

Query: 301 ----VSWAAIISGYAQTGHYEEALNMFIEIKRD 329
               V++ A++S  + +G  E    +F  + +D
Sbjct: 423 TPNHVTFLAVLSACSYSGLSERGWEIFQSMSQD 455



 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 19/212 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + GH     R F T      V+ +A+++ Y +  R   AR +FDKM +++++SWN ++ G
Sbjct: 345 KQGHAALVRRGFGT----DLVANSALVNFYSKWGRMENARHVFDKMHRKNIISWNALIAG 400

Query: 62  YVRNRRLGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMPHKN---- 113
           Y  + R  +A  +F+ M Q+++    V++ A+LS  + +G ++   E+F  M   +    
Sbjct: 401 YGHHGRGEEAIEMFEKMLQENMTPNHVTFLAVLSACSYSGLSERGWEIFQSMSQDHNIKP 460

Query: 114 -AISWNGLLAAYVHNGRIEEACRLF-DSKSDWELISWNCLMGGFVKRKMLG----AARKL 167
            A+ +  ++      G ++EA  L  ++     L  W  L+      K L     AA KL
Sbjct: 461 RAMHYACMIELLGREGLLDEAVALIRNAPFPPTLNMWAALLIACRMHKNLELGKFAAEKL 520

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF 199
           +  M    + ++  +++ Y   G + +A ++ 
Sbjct: 521 YG-MEPEKLCNYVMLLNIYNSSGKLKEAADVL 551


>Medtr4g094502.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:38095334-38099255 | 20130731
          Length = 653

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 338/591 (57%), Gaps = 46/591 (7%)

Query: 161 LGAARKLFDKMHVR----DVVSWNTMISGYAQDGDMSQAK----NLFDQSPHQDVFTWTA 212
           L  A ++ D M  R    D ++++ +I        + + K    ++F        F    
Sbjct: 65  LPRAMQILDTMEKRGVFADAIAYSELIKCCLAHKAVREGKRVHNHIFSNGYRPKTFLINT 124

Query: 213 MVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE------AMPS 266
           +++ YV+  +L+EA+  FD+MP++N +S+  M++ Y  +   D A +L         MP+
Sbjct: 125 LLNMYVKLNLLEEAQMVFDKMPERNVVSWTTMISAYSYAKLNDRAMKLLVFMIRDGVMPN 184

Query: 267 ------------------------------RNVSSWNTMITGYGQNGDIAQARKLFDMMP 296
                                          +V   + +I  Y + G++ +A  +F  M 
Sbjct: 185 MYTFSSVLRACERLCDLKQVHSGILKAGLESDVFVRSALIDAYSKLGELLEAVGVFREMV 244

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQ 356
             D V W +II+ +AQ    +EAL ++  ++R+G   ++ST +  L  C   + LELG+Q
Sbjct: 245 TGDSVVWNSIIAAFAQHSDGDEALALYKSMRREGFPADQSTLTSVLRACTGSSLLELGRQ 304

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGF 416
           +H  V+K  ++    + NALL MY KCGS+ +A  +F  +  KDV+SW+TMI+G A++GF
Sbjct: 305 VHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFSRMAVKDVISWSTMISGLAQNGF 362

Query: 417 GKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYT 476
             +AL +F+SMK  G +P+ IT++GVL ACSHAGL++ G  YF SM   Y + P  +HY+
Sbjct: 363 SVEALNLFDSMKVSGPRPNYITILGVLFACSHAGLVNEGWGYFRSMKNLYGIDPGREHYS 422

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH 536
           C++DLLGRAG+L+E   L+  M  EP   +W  LL A R   N +L   AA+ + K++  
Sbjct: 423 CLLDLLGRAGKLDEMVKLIHEMTCEPDVVTWRTLLDACRAQRNVDLATYAAKEILKLDQQ 482

Query: 537 NSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPE 596
           ++G YVLLSN+YA S RW D   +R  M   G++K  G SW+EV N+IH F VGD  HP+
Sbjct: 483 DAGAYVLLSNIYANSKRWDDVAEVRRTMSARGIRKEPGCSWIEVNNQIHAFIVGDKSHPQ 542

Query: 597 KDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGR 656
            D I   L+E   K+   GYV  T  +L D+E E+ E+ L++HSEKLA+ FGI++ P  +
Sbjct: 543 IDEINRKLDEYIRKLTDAGYVPDTNFMLKDLEGEQSEYSLRHHSEKLAIVFGIISFPREK 602

Query: 657 PIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            IR+ KNL++C DCH   K I+K+  R I++RD  R+HHF +G+CSCGDYW
Sbjct: 603 TIRIWKNLKICGDCHIFAKLIAKLEQRHIVIRDPIRYHHFQDGVCSCGDYW 653



 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 174/387 (44%), Gaps = 49/387 (12%)

Query: 9   ALRVFNTMPRR----SSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVSWNVM 58
           A+++ +TM +R     +++Y+ +I   L +      + + + +      P+  L+  N +
Sbjct: 68  AMQILDTMEKRGVFADAIAYSELIKCCLAHKAVREGKRVHNHIFSNGYRPKTFLI--NTL 125

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           L  YV+   L +A+ +FD MP+++VVSW  M+S Y+     D A ++   M        +
Sbjct: 126 LNMYVKLNLLEEAQMVFDKMPERNVVSWTTMISAYSYAKLNDRAMKLLVFMIR------D 179

Query: 119 GLLAAYVHNGRIEEAC-RLFDSKS----------DWELISWNCLMGGFVKRKMLGAARKL 167
           G++        +  AC RL D K           + ++   + L+  + K   L  A  +
Sbjct: 180 GVMPNMYTFSSVLRACERLCDLKQVHSGILKAGLESDVFVRSALIDAYSKLGELLEAVGV 239

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGML 223
           F +M   D V WN++I+ +AQ  D  +A  L+     +    D  T T+++     + +L
Sbjct: 240 FREMVTGDSVVWNSIIAAFAQHSDGDEALALYKSMRREGFPADQSTLTSVLRACTGSSLL 299

Query: 224 DEARTF------FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMIT 277
           +  R        FDQ    + I  NA++  Y +   ++ A+ +F  M  ++V SW+TMI+
Sbjct: 300 ELGRQVHVHVLKFDQ----DLILNNALLDMYCKCGSLEDAKFIFSRMAVKDVISWSTMIS 355

Query: 278 GYGQNGDIAQARKLFDMM----PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR-DGES 332
           G  QNG   +A  LFD M    P+ + ++   ++   +  G   E    F  +K   G  
Sbjct: 356 GLAQNGFSVEALNLFDSMKVSGPRPNYITILGVLFACSHAGLVNEGWGYFRSMKNLYGID 415

Query: 333 LNRSTFSCALSTCADIAAL-ELGKQIH 358
             R  +SC L        L E+ K IH
Sbjct: 416 PGREHYSCLLDLLGRAGKLDEMVKLIH 442



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 175/411 (42%), Gaps = 66/411 (16%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN- 65
           + A  VF+ MP R+ VS+  MIS Y        A  L   M +  ++      +  +R  
Sbjct: 136 EEAQMVFDKMPERNVVSWTTMISAYSYAKLNDRAMKLLVFMIRDGVMPNMYTFSSVLRAC 195

Query: 66  RRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
            RL D +++   +     + DV   +A++  Y++ G   EA  VF +M   +++ WN ++
Sbjct: 196 ERLCDLKQVHSGILKAGLESDVFVRSALIDAYSKLGELLEAVGVFREMVTGDSVVWNSII 255

Query: 122 AAYVHNGRIEEACRLFDS-------------------------------------KSDWE 144
           AA+  +   +EA  L+ S                                     K D +
Sbjct: 256 AAFAQHSDGDEALALYKSMRREGFPADQSTLTSVLRACTGSSLLELGRQVHVHVLKFDQD 315

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD---- 200
           LI  N L+  + K   L  A+ +F +M V+DV+SW+TMISG AQ+G   +A NLFD    
Sbjct: 316 LILNNALLDMYCKCGSLEDAKFIFSRMAVKDVISWSTMISGLAQNGFSVEALNLFDSMKV 375

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMD 255
             P  +  T   ++      G+++E   +F  M     I      Y+ ++    ++ K+D
Sbjct: 376 SGPRPNYITILGVLFACSHAGLVNEGWGYFRSMKNLYGIDPGREHYSCLLDLLGRAGKLD 435

Query: 256 -MARELFEAMPSRNVSSWNTMITG--YGQNGDIAQ-ARKLFDMMPQRDCVSWAAIISGYA 311
            M + + E     +V +W T++      +N D+A  A K    + Q+D  ++  + + YA
Sbjct: 436 EMVKLIHEMTCEPDVVTWRTLLDACRAQRNVDLATYAAKEILKLDQQDAGAYVLLSNIYA 495

Query: 312 QTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
            +  ++           D   + R+  +  +      + +E+  QIH  +V
Sbjct: 496 NSKRWD-----------DVAEVRRTMSARGIRKEPGCSWIEVNNQIHAFIV 535


>Medtr4g094658.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:38663296-38660628 | 20130731
          Length = 745

 Score =  420 bits (1080), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 348/574 (60%), Gaps = 10/574 (1%)

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +F S    +    N L+  + K   L  A KLFD+M  R+ +S N MI  Y + G++  A
Sbjct: 98  IFTSGCSSDKFISNHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENA 157

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQS 251
           KNLFD+   ++V TW AMV+G V+ G+ +EA   F +M       +E S+ +++ G    
Sbjct: 158 KNLFDEMTERNVATWNAMVTGLVKFGLNEEALLLFSRMNVLGFVPDEYSFGSVLRGCAHL 217

Query: 252 NKMDMARELFEAMPSRNVSSWNTMITG-----YGQNGDIAQARKLFDMMPQRDCVSWAAI 306
             + +  ++  A  ++    +N+++       Y + G +    ++   MP  + V+W  +
Sbjct: 218 RALFVGEQV-HAYVAKCGFEFNSVVGCSLAHMYMKAGSLCNGERIIKWMPNCNLVAWNTL 276

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
           ++G AQ   +E  L+ +  +K  G   ++ TF   +S+C+++A L  GKQIH +V+K G 
Sbjct: 277 MAGKAQNRCFEGVLDHYCMMKMAGYRPDKITFVSVISSCSELATLCQGKQIHAEVIKAGA 336

Query: 367 ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFES 426
            +   V ++L+ MY KCGS+ ++   F   EE+DVV W++MIA Y  HG  ++A+ +F  
Sbjct: 337 SSVVSVISSLVSMYSKCGSLQDSIKAFLECEERDVVIWSSMIAAYGFHGQCEKAIKLFND 396

Query: 427 MKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAG 486
            +   +  +E+T + +L ACSH+GL D+G ++F  M + Y +    +HYTC++DLLGR+G
Sbjct: 397 KEKENMAGNEVTFLSLLYACSHSGLKDKGLDFFDMMVEKYGLKARLEHYTCVVDLLGRSG 456

Query: 487 RLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSN 546
            LEEA+ ++R+MP    A  W  LL A +IH N E+  + AE V +++P +   YVL++ 
Sbjct: 457 CLEEAETMIRSMPVSADAIIWKTLLSACKIHKNEEMARRVAEEVLRIDPQDPASYVLIAG 516

Query: 547 LYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEE 606
           ++A++ RW +   +R  M+D  V+K  G SWVEV+N++H+F  GD  HP+   I  +LEE
Sbjct: 517 IHASAKRWQNVSEVRRAMKDKMVKKEPGVSWVEVKNQVHQFHTGDKSHPKFVEINQYLEE 576

Query: 607 LDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRV 666
           L  +M+ +GYV     VLHD++ EEKE+ L +HSEKLA+AF ++TIP G PIRV+KN+RV
Sbjct: 577 LTSEMKMQGYVPDISSVLHDMDNEEKEYNLTHHSEKLAIAFALMTIPKGEPIRVMKNMRV 636

Query: 667 CEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGI 700
           C DCH AIK+IS+I    II+RDS RFHHF  G+
Sbjct: 637 CSDCHVAIKYISEIKNLEIIVRDSSRFHHFKNGL 670



 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 184/418 (44%), Gaps = 37/418 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +++ Y +    + A  LFD+MP+R+ +S N+M+  Y+    + +A+ LFD M +++V 
Sbjct: 111 NHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENAKNLFDEMTERNVA 170

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           +WNAM++G  + G  +EA  +F +M   N +   G +      G +   C    +    E
Sbjct: 171 TWNAMVTGLVKFGLNEEALLLFSRM---NVL---GFVPDEYSFGSVLRGCAHLRALFVGE 224

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
            +       GF    ++G                  ++   Y + G +   + +    P+
Sbjct: 225 QVHAYVAKCGFEFNSVVGC-----------------SLAHMYMKAGSLCNGERIIKWMPN 267

Query: 205 QDVFTWTAMVSGYVQN----GMLDE------ARTFFDQMPQKNEISYNAMVAGYVQSNKM 254
            ++  W  +++G  QN    G+LD       A    D++   + IS  + +A   Q  ++
Sbjct: 268 CNLVAWNTLMAGKAQNRCFEGVLDHYCMMKMAGYRPDKITFVSVISSCSELATLCQGKQI 327

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
               E+ +A  S  VS  +++++ Y + G +  + K F    +RD V W+++I+ Y   G
Sbjct: 328 H--AEVIKAGASSVVSVISSLVSMYSKCGSLQDSIKAFLECEERDVVIWSSMIAAYGFHG 385

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV-KTGYETGCFVG 373
             E+A+ +F + +++  + N  TF   L  C+     + G      +V K G +      
Sbjct: 386 QCEKAIKLFNDKEKENMAGNEVTFLSLLYACSHSGLKDKGLDFFDMMVEKYGLKARLEHY 445

Query: 374 NALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
             ++ +  + G + EA  +   +    D + W T+++    H   + A  V E +  I
Sbjct: 446 TCVVDLLGRSGCLEEAETMIRSMPVSADAIIWKTLLSACKIHKNEEMARRVAEEVLRI 503



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 153/363 (42%), Gaps = 57/363 (15%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  ++A+++F+ MPRR+ +S N MI  YL       A++LFD+M +R++ +WN M+TG V
Sbjct: 121 GELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENAKNLFDEMTERNVATWNAMVTGLV 180

Query: 64  RNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAI 115
           +     +A  LF  M       D  S+ ++L G A         +V   +       N++
Sbjct: 181 KFGLNEEALLLFSRMNVLGFVPDEYSFGSVLRGCAHLRALFVGEQVHAYVAKCGFEFNSV 240

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRK----------MLGAAR 165
               L   Y+  G +    R+     +  L++WN LM G  + +          M+  A 
Sbjct: 241 VGCSLAHMYMKAGSLCNGERIIKWMPNCNLVAWNTLMAGKAQNRCFEGVLDHYCMMKMAG 300

Query: 166 KLFDKMHVRDVVS----WNTMISG-------------------------YAQDGDMSQAK 196
              DK+    V+S      T+  G                         Y++ G +  + 
Sbjct: 301 YRPDKITFVSVISSCSELATLCQGKQIHAEVIKAGASSVVSVISSLVSMYSKCGSLQDSI 360

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSN 252
             F +   +DV  W++M++ Y  +G  ++A   F+   ++    NE+++ +++     S 
Sbjct: 361 KAFLECEERDVVIWSSMIAAYGFHGQCEKAIKLFNDKEKENMAGNEVTFLSLLYACSHSG 420

Query: 253 KMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAI 306
             D   + F+ M  +      +  +  ++   G++G + +A  +   MP   D + W  +
Sbjct: 421 LKDKGLDFFDMMVEKYGLKARLEHYTCVVDLLGRSGCLEEAETMIRSMPVSADAIIWKTL 480

Query: 307 ISG 309
           +S 
Sbjct: 481 LSA 483



 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 37/174 (21%)

Query: 307 ISGYAQTGHYEEALNMFI-EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           I+     GH ++A   F+ +I  +        FS  + +C    ++ LGKQ+H  +  +G
Sbjct: 48  ITTLCSKGHIKKAFESFLCDIWTEPR-----LFSILIQSCIPTNSVSLGKQLHSLIFTSG 102

Query: 366 YETGCFVGNALLGMYFK---------------------C----------GSIGEANDVFE 394
             +  F+ N LL  Y K                     C          G+I  A ++F+
Sbjct: 103 CSSDKFISNHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENAKNLFD 162

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
            + E++V +WN M+ G  + G  ++AL++F  M  +G  PDE +   VL  C+H
Sbjct: 163 EMTERNVATWNAMVTGLVKFGLNEEALLLFSRMNVLGFVPDEYSFGSVLRGCAH 216


>Medtr3g011940.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:3127058-3124158 | 20130731
          Length = 845

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/749 (32%), Positives = 391/749 (52%), Gaps = 66/749 (8%)

Query: 5   HCDSALRVFNTMPR--RSSVSYN------AMISGYLRNARFSLARDLFDKMPQRDLVSWN 56
           HC S   +   +P   ++   YN       +I+ + ++   + A  +FD +  +  V ++
Sbjct: 28  HCTSTKHLHQILPLIIKTGSYYNDHLFQTKLINMFFKHGSINEASLVFDTVEHKQDVLYH 87

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQKD-----VVSWNAMLSGYAQNGYADEAREVFYQMP- 110
            ML GY +N  L DA   +  M Q D     V  +  +L    +    ++ RE+  Q+  
Sbjct: 88  AMLKGYAKNSSLCDALCFYHRM-QNDGVRPVVYDFAYLLQLCGKKFELEKGREIHGQVIV 146

Query: 111 ---HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
                +  S  G++  YV  G I++A ++F+  S+ +L+SW  L+ G+ +      A  L
Sbjct: 147 NGFEYDLFSMIGVMGFYVKCGEIDDAFKVFERLSEKDLVSWTSLIAGYAQNGYPKRALDL 206

Query: 168 FDKMH----VRDVVSWNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQ 219
           F +M       D V+  +++   A   D+   K++   +        V    A++  Y +
Sbjct: 207 FYRMQEAGLKADSVTLVSILPAVADIKDLRIGKSIHGYALRLGFESKVSVINALLYMYFE 266

Query: 220 NGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM------PSR------ 267
            G    AR  F+ M  K  +S+N M+ GY Q  K + A   F  M      P+R      
Sbjct: 267 CGCERIARLVFEGMINKCAVSWNTMIDGYAQIGKSEEAFATFLKMLDEGVEPTRVAIMAA 326

Query: 268 ---------------------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
                                       V   N++++ Y +   +  A  +F+ + ++  
Sbjct: 327 LTACADLGDLERGRFVHKLVLQKKLDFEVPVMNSLLSMYSKCKRVDLAASIFENLKKKTN 386

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           V+W A+I GYAQ G   EAL +F  ++      +  T    ++  AD++   + K IHG 
Sbjct: 387 VTWNAMILGYAQNGCVNEALYLFCVMQSQEVKPDCFTLVAVITALADLSVNRMAKWIHGL 446

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
            ++T  +   +V  AL+ MY KCG+   A  +F+ + E+ V++WN MI GY  HG GK+A
Sbjct: 447 AIRTFMDNDVYVATALIDMYAKCGATQTARKLFDMMHERHVITWNAMIDGYGTHGLGKEA 506

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
           + +F++M+   V P++ T + V+SACSH+G ++ G  +F SM +DY + PS  HY+ ++D
Sbjct: 507 IDIFDNMQKEAVIPNDTTFLSVISACSHSGFVEEGLHFFQSMKEDYGLEPSMDHYSAVVD 566

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LLGRAG+L  A +L+  MP +P     GA+LGA +IH N ELGEKAA+ +F+++P   G 
Sbjct: 567 LLGRAGKLHGAWNLIEEMPIKPGITVLGAMLGACKIHKNVELGEKAADKLFELDPDEGGY 626

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRI 600
           +VLL+N+Y ++  W     +R+ M   G+ K  G S+VE++N++H F  G   HP+  +I
Sbjct: 627 HVLLANMYVSASMWDKVAKVRTAMEKKGIHKTPGCSFVELRNEVHTFYSGSTNHPQAKKI 686

Query: 601 YAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRV 660
           YAFLE L  K+R  GY+  T  + HDVEE+ KE +L  HSE+LA+AFG+L    G PI V
Sbjct: 687 YAFLEALGDKIRDAGYIPDTNSI-HDVEEKVKEQLLSSHSERLAIAFGLLNTNHGTPIHV 745

Query: 661 IKNLRVCEDCHNAIKHISKIVGRLIILRD 689
            KNLRVC DCH+  K+IS + GR II+RD
Sbjct: 746 RKNLRVCGDCHDVTKYISLVTGREIIVRD 774


>Medtr8g086040.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:35708903-35705786 | 20130731
          Length = 616

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/549 (38%), Positives = 335/549 (61%), Gaps = 8/549 (1%)

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGM 222
           LF ++H  +   ++ +I  YA++G    +  L+    + +V    FT++A+ S      +
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 223 LDEARTFFDQMPQKNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ 281
             +           N++   N ++  YV+   +D AR++F+ MP R+V +W  +I  Y +
Sbjct: 128 GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYAR 187

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
           +GD+  A +LF  +P +D V+W ++++GY+Q    ++AL  F +++  G   +  T   A
Sbjct: 188 SGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGA 247

Query: 342 LSTCADIAALELGKQIH--GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
           +S CA +        I    +  + G  +  FVG+AL+ MY KCG++ EA +VF+G++E 
Sbjct: 248 ISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEM 307

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           +V S+++MI G+A HG  + A+ +F  M   G+KP+ +T VG+ +ACSHAG++++G + F
Sbjct: 308 NVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLF 367

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGN 519
            +M + Y V+P++ HY CM DLLGRAG LE+A  L++ MP EP    WGALLGAS IHGN
Sbjct: 368 GAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGN 427

Query: 520 TELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
            ++ E A+  +F++EP N G Y+LLS  YA + +W D   +R  MR+  ++K  G SWVE
Sbjct: 428 PDVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVE 487

Query: 580 VQNK-IHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKY 638
            +N  IH+F  GD  HPE + I   L++L  +++  GY      V +D+++E K  +L  
Sbjct: 488 AKNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVS 547

Query: 639 HSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNE 698
           HSEKLA+A+G+L+  AG  I+++KNLR+CEDCH  +   SK+ GR II+RD+ RFHHF  
Sbjct: 548 HSEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLN 607

Query: 699 GICSCGDYW 707
           G CSC ++W
Sbjct: 608 GACSCNNFW 616



 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 149/303 (49%), Gaps = 19/303 (6%)

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA--ISWN-----GLLAAYVH 126
           LF  +   +   ++A++  YA+NG    +  ++  M + N   +S+       LL     
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 127 NGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGY 186
             ++     LF   +D  L   N ++  +VK  +L  ARK+FD+M  RDVV+W  +I  Y
Sbjct: 128 GSQLHLHAFLFGFVND--LYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAY 185

Query: 187 AQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYN 242
           A+ GDM  A  LF   P +D+  WT+MV+GY QN M  +A  FF +M +     +EI+  
Sbjct: 186 ARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLV 245

Query: 243 AMVAGYVQ---SNKMDMARELFEAM---PSRNVSSWNTMITGYGQNGDIAQARKLFDMMP 296
             ++   Q   S   D  RE+ E+       NV   + +I  Y + G++ +A  +F  M 
Sbjct: 246 GAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMK 305

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQ 356
           + +  S++++I G+A  G    A+ +F E+  +G   N  TF    + C+    +E G+Q
Sbjct: 306 EMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQ 365

Query: 357 IHG 359
           + G
Sbjct: 366 LFG 368



 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 155/335 (46%), Gaps = 24/335 (7%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL--VSWNV-MLTGYVRNRRL 68
           +F+ +   +   Y+A+I  Y RN  F  +  L+  M   ++  VS+    L   ++N  L
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSL 127

Query: 69  GDARRL--FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVH 126
           G    L  F      D+   N ++  Y + G  D AR+VF +MPH++ ++W  L+ AY  
Sbjct: 128 GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYAR 187

Query: 127 NGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTM 182
           +G ++ AC LF      ++++W  ++ G+ +  M   A + F KM     V D ++    
Sbjct: 188 SGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGA 247

Query: 183 ISGYAQDGDMSQA---KNLFDQS---PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
           IS  AQ G    A   + + + S      +VF  +A++  Y + G ++EA   F  M + 
Sbjct: 248 ISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEM 307

Query: 237 NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGYGQNGDIAQARKLF 292
           N  SY++M+ G+    +   A +LF  M    +     ++  + T     G + Q ++LF
Sbjct: 308 NVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLF 367

Query: 293 DMMPQRDCVS-----WAAIISGYAQTGHYEEALNM 322
             M +   VS     +A +     + GH E+AL +
Sbjct: 368 GAMKECYGVSPTADHYACMADLLGRAGHLEKALQL 402



 Score = 99.8 bits (247), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%), Gaps = 33/294 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +I  Y++      AR +FD+MP RD+V+W  ++  Y R+  +  A  LF  +P KD+V
Sbjct: 148 NTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMV 207

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRL-FDSKSDW 143
           +W +M++GY+QN    +A + F +M     ++    L      G I    +L     +DW
Sbjct: 208 AWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLV-----GAISACAQLGVSGYADW 262

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP 203
                   +    +    G+   +F           + +I  Y++ G++ +A N+F    
Sbjct: 263 --------IREIAESSRFGSGSNVF---------VGSALIDMYSKCGNVEEAYNVFKGMK 305

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARE 259
             +VF++++M+ G+  +G    A   F +M +     N +++  +      +  ++  ++
Sbjct: 306 EMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQ 365

Query: 260 LFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAII 307
           LF AM      S     +  M    G+ G + +A +L   MP + +   W A++
Sbjct: 366 LFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALL 419


>Medtr1g059280.2 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:21517672-21518970 | 20130731
          Length = 432

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/431 (45%), Positives = 285/431 (66%), Gaps = 2/431 (0%)

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y ++G I +AR +F+ +P+RD VS  AIISGYAQ G  EEAL +F  ++ +G   N  T+
Sbjct: 2   YAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 61

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           +  L+  + +AAL+LGKQ+H  V+++   +   + N+L+ MY KCG++  +  +F+ + E
Sbjct: 62  TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 121

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGLIDRGTE 457
           + V+SWN M+ GY++HG G++ L +F  M+    VKPD +T++ VLS CSH GL D+G  
Sbjct: 122 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLN 181

Query: 458 YFYSMNK-DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRI 516
            F  M+     V P  +HY C++DLLGR+GR+EEA + ++ MPFEP AA WG+LLGA R+
Sbjct: 182 IFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 241

Query: 517 HGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           H N ++GE A + + ++EP N+G YV+LSNLYA++GRW D  ++R  M    V K  G S
Sbjct: 242 HSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRS 301

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHML 636
            +E+   +H F   D  HP ++ I   ++EL    +  GYV     VLHDV+EE+KE +L
Sbjct: 302 SIELDQVLHTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKIL 361

Query: 637 KYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHF 696
             HSEKLA++FG++  PA  PIRVIKNLR+C DCHN  K+ISK+ GR + LRD +RFH  
Sbjct: 362 LGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRI 421

Query: 697 NEGICSCGDYW 707
             G CSC DYW
Sbjct: 422 VGGKCSCEDYW 432



 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 144/285 (50%), Gaps = 25/285 (8%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISW 117
           Y ++ ++ +AR +F+ +P++DVVS  A++SGYAQ G  +EA E+F ++       N +++
Sbjct: 2   YAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 61

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISW----NCLMGGFVKRKMLGAARKLFDKMHV 173
            G+L A      ++   ++ +     E+ S+    N L+  + K   L  +R++FD M+ 
Sbjct: 62  TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 121

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEART 228
           R V+SWN M+ GY++ G+  +   LF     +     D  T  A++SG    G+ D+   
Sbjct: 122 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLN 181

Query: 229 FFDQMPQ-KNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSRNVSS-WNTMITG--Y 279
            F+ M   K E+      Y  +V    +S +++ A E  + MP    ++ W +++     
Sbjct: 182 IFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 241

Query: 280 GQNGDIAQ--ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
             N DI +   ++L ++ P  +  ++  + + YA  G +E+  ++
Sbjct: 242 HSNVDIGEFAGQQLLEIEPG-NAGNYVILSNLYASAGRWEDVSSL 285



 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 157/338 (46%), Gaps = 54/338 (15%)

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISY 241
           YA+DG + +A+ +F+  P +DV + TA++SGY Q G+ +EA   F ++     + N ++Y
Sbjct: 2   YAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 61

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSW----NTMITGYGQNGDIAQARKLFDMMPQ 297
             ++        +D+ +++   +    + S+    N++I  Y + G++  +R++FD M +
Sbjct: 62  TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 121

Query: 298 RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS-TFSCALSTCADIAALELGKQ 356
           R  +SW A++ GY++ G   E L +F  ++ + +    S T    LS C+          
Sbjct: 122 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCS---------- 171

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG-IE-EKDVVSWNTMIAGYARH 414
            HG +   G           L ++         ND+  G IE E  +  +  ++    R 
Sbjct: 172 -HGGLEDKG-----------LNIF---------NDMSSGKIEVEPKMEHYGCVVDLLGRS 210

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP-SSK 473
           G  ++A   FE +K +  +P       +L AC     +D G    ++  +   + P ++ 
Sbjct: 211 GRVEEA---FEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGE---FAGQQLLEIEPGNAG 264

Query: 474 HYTCMIDLLGRAGRLEEA---QDLM--RNMPFEPPAAS 506
           +Y  + +L   AGR E+    +DLM  + +  EP  +S
Sbjct: 265 NYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSS 302



 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 10/144 (6%)

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY K G I EA  VFE + E+DVVS   +I+GYA+ G  ++AL +F  ++  G+K + +T
Sbjct: 1   MYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVT 60

Query: 439 MVGVLSACSHAGLIDRGTE----YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
             GVL+A S    +D G +       S    + V  +S     +ID+  + G L  ++ +
Sbjct: 61  YTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNS-----LIDMYSKCGNLTYSRRI 115

Query: 495 MRNMPFEPPAASWGALLGASRIHG 518
              M +E    SW A+L     HG
Sbjct: 116 FDTM-YERTVISWNAMLVGYSKHG 138



 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 125/292 (42%), Gaps = 25/292 (8%)

Query: 31  YLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR----NRRLGDARRLFDSMPQKDVVSW 86
           Y ++ +   AR +F+ +P+RD+VS   +++GY +       L   RRL     + + V++
Sbjct: 2   YAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTY 61

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISW----NGLLAAYVHNGRIEEACRLFDSKSD 142
             +L+  +     D  ++V   +      S+    N L+  Y   G +  + R+FD+  +
Sbjct: 62  TGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 121

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMHVR-----DVVSWNTMISGYAQDGDMSQAKN 197
             +ISWN ++ G+ K        KLF  M        D V+   ++SG +  G   +  N
Sbjct: 122 RTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLN 181

Query: 198 LFDQSPHQDVFT------WTAMVSGYVQNGMLDEARTFFDQMP-QKNEISYNAMVAGYVQ 250
           +F+      +        +  +V    ++G ++EA  F  +MP +     + +++     
Sbjct: 182 IFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRV 241

Query: 251 SNKMDM----ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
            + +D+     ++L E  P  N  ++  +   Y   G       L D+M ++
Sbjct: 242 HSNVDIGEFAGQQLLEIEPG-NAGNYVILSNLYASAGRWEDVSSLRDLMLKK 292



 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 44/188 (23%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           ++G    A  VF  +P R  VS  A+ISGY +      A +LF ++    + S  V  TG
Sbjct: 4   KDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTG 63

Query: 62  ---------------------------------------YVRNRRLGDARRLFDSMPQKD 82
                                                  Y +   L  +RR+FD+M ++ 
Sbjct: 64  VLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERT 123

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHK-----NAISWNGLLAAYVHNGRIEEACRLF 137
           V+SWNAML GY+++G   E  ++F  M  +     ++++   +L+   H G  ++   +F
Sbjct: 124 VISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIF 183

Query: 138 DSKSDWEL 145
           +  S  ++
Sbjct: 184 NDMSSGKI 191


>Medtr5g031490.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:13515619-13513589 | 20130731
          Length = 676

 Score =  414 bits (1064), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 334/637 (52%), Gaps = 81/637 (12%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD---------- 200
           L+ G++K  ++  ARKLFD+M  R +V+WN+MIS +   G   +A  L+D          
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 201 --------------------QSPH----------QDVFTWTAMVSGYVQNGMLDEARTFF 230
                               Q  H           D F  T +V  Y + G + +AR  F
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVF 160

Query: 231 DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN---------------------- 268
           D++  K+ + + A++ GY Q      A E+FE M                          
Sbjct: 161 DRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLV 220

Query: 269 -----------------VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYA 311
                            V+S  +++T Y +   +  + K+F+ +     V+W + I G  
Sbjct: 221 NGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLV 280

Query: 312 QTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCF 371
           Q G  E AL+MF E+ R   S N  TFS  L  C+ +A LE G+QIH   VK G +   +
Sbjct: 281 QNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKY 340

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG 431
           V  AL+ +Y KCG++ +A  VFE + E DVVS NTMI  YA++GFG +AL +FE MK +G
Sbjct: 341 VDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLG 400

Query: 432 VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
            KP+ +T + +L AC++AGL++ G + F  +  ++S+  +  HYTCMIDLLGRA R EEA
Sbjct: 401 HKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEA 460

Query: 492 QDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAAS 551
             L+      P    W  LL A +IHG  E+ EK  + +    P + G ++LL+N+YA++
Sbjct: 461 AMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASA 519

Query: 552 GRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKM 611
           G+W +   M+S  RD+ ++K    SWV++  ++H F  GD  HP    I   L EL  K+
Sbjct: 520 GKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKV 579

Query: 612 RREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI-LTIPAGRPIRVIKNLRVCEDC 670
              GY   TK VL D+EEE+K   L YHSEKLA+AF +  T      IR+ KNLRVC DC
Sbjct: 580 ITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDC 639

Query: 671 HNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           H+ IK +S + GR II RD+ RFHHF  GICSC DYW
Sbjct: 640 HSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676



 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 201/452 (44%), Gaps = 69/452 (15%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----PQKD 82
           +I GY++ +  + AR LFD+MP R +V+WN M++ +V   +  +A  L+D+M       D
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 83  VVSWNAMLSGYAQNGYADEARE-----VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF 137
             +++A+   +++ G + E ++     V       +     G++  Y   G++++A  +F
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVF 160

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--------------------HVRDVV 177
           D   D +++ +  L+ G+ +R + G A ++F+ M                    ++ D+V
Sbjct: 161 DRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLV 220

Query: 178 -------------------SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
                              S  ++++ Y++   +  +  +F+   +    TWT+ + G V
Sbjct: 221 NGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLV 280

Query: 219 QNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWN- 273
           QNG  + A + F +M +     N  ++++++     S  M  A E   A+  +     N 
Sbjct: 281 QNGREEIALSMFREMIRCSISPNHFTFSSILHA-CSSLAMLEAGEQIHAVTVKLGVDGNK 339

Query: 274 ----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
                +I  YG+ G++ +AR +F+ + + D VS   +I  YAQ G   EAL +F  +K+ 
Sbjct: 340 YVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKL 399

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHG------QVVKTGYETGCFVGNALLGMYFKC 383
           G   N  TF   L  C +   +E G QI         +  T     C +   LLG   + 
Sbjct: 400 GHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMID--LLG---RA 454

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
               EA  + E  +  DV+ W T++     HG
Sbjct: 455 KRFEEAAMLIEEGKNPDVIQWRTLLNACKIHG 486



 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 120/270 (44%), Gaps = 53/270 (19%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------------------- 47
           + +++VFN++   S V++ + I G ++N R  +A  +F +M                   
Sbjct: 255 EDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHAC 314

Query: 48  ---------PQRDLVSWNVMLTG-----------YVRNRRLGDARRLFDSMPQKDVVSWN 87
                     Q   V+  + + G           Y +   +  AR +F+S+ + DVVS N
Sbjct: 315 SSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSIN 374

Query: 88  AMLSGYAQNGYADEAREVFYQMP---HK-NAISWNGLLAAYVHNGRIEEACRLFD---SK 140
            M+  YAQNG+  EA E+F +M    HK N +++  +L A  + G +EE C++F    + 
Sbjct: 375 TMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNN 434

Query: 141 SDWELI--SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA--- 195
              EL    + C++    + K    A  L ++    DV+ W T+++     G++  A   
Sbjct: 435 HSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKF 494

Query: 196 -KNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
            K + DQ+P +D  T   + + Y   G  D
Sbjct: 495 MKKMLDQAP-RDGGTHILLTNIYASAGKWD 523



 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 154/379 (40%), Gaps = 61/379 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP-QRDLVSWNVMLTGY 62
           G    A  VF+ +  +  V + A+I GY +      A ++F+ M   R   +   + +  
Sbjct: 151 GKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVL 210

Query: 63  VRNRRLGDAR--RLFDSMPQKD-----VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI 115
           V    LGD    +L   +  K      V S  ++L+ Y++    +++ +VF  + + + +
Sbjct: 211 VSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHV 270

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVKRKMLGA-------- 163
           +W   +   V NGR E A  +F       +     +++ ++       ML A        
Sbjct: 271 TWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVT 330

Query: 164 ---------------------------ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
                                      AR +F+ +   DVVS NTMI  YAQ+G   +A 
Sbjct: 331 VKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEAL 390

Query: 197 NLFDQSP---HQ-DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAG 247
            LF++     H+ +V T+ +++      G+++E    F  +   + I      Y  M+  
Sbjct: 391 ELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDL 450

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQA----RKLFDMMPQRDCVSW 303
             ++ + + A  L E   + +V  W T++     +G++  A    +K+ D  P RD  + 
Sbjct: 451 LGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAP-RDGGTH 509

Query: 304 AAIISGYAQTGHYEEALNM 322
             + + YA  G ++  + M
Sbjct: 510 ILLTNIYASAGKWDNVIEM 528



 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
           K +H  ++K+G     F G+ L+  Y KC  I EA  +F+ +  + +V+WN+MI+ +   
Sbjct: 21  KSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSR 79

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           G  K+A+ ++++M   GV PD  T   +  A S  G+   G
Sbjct: 80  GKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREG 120


>Medtr3g027990.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:8840204-8842727 | 20130731
          Length = 623

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 324/546 (59%), Gaps = 12/546 (2%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
           RD    + ++S Y + G    A  LFD+ P +D  +W ++VSG  + G L E  + F +M
Sbjct: 78  RDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKM 137

Query: 234 P-----QKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGD 284
                 + NE ++ ++++  V     D    +     +      V   N ++  YG+ G 
Sbjct: 138 KSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGF 197

Query: 285 IAQARKLFDMMPQ--RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           +  A +LF  MP+  +  VSW +I++  AQ G   EA N F  ++ +G   + +T    L
Sbjct: 198 VESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLL 257

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
             C +     + + +HG +   G +    +   LL +Y K G +  +  VFE I + D V
Sbjct: 258 QACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKV 317

Query: 403 SWNTMIAGYARHGFGKQALMVFESM-KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
           +W  M+AGYA HG GK+A+  FE + +  G++PD +T   +LSACSH+GL+  G  +F  
Sbjct: 318 AWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRV 377

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M+  Y V P   HY+CM+DLLGR G L++A +L++NMPFEP +  WGALLGA R+H N +
Sbjct: 378 MSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNID 437

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++AA+ +  ++P +   Y++LSN+Y+A+G W DA  +R+ M++  + +  G S++E  
Sbjct: 438 LGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHG 497

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           NKIH+F V D  HP+  RI+  LEE+  K++  G+V  T+ +LHDV+EE K  M+  HSE
Sbjct: 498 NKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSE 557

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           K+A+A+G+L   A  P+ +IKNLR+C DCHN +K +S +  R II+RD+ RFH F+ G+C
Sbjct: 558 KIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLC 617

Query: 702 SCGDYW 707
           SCGDYW
Sbjct: 618 SCGDYW 623



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 162/404 (40%), Gaps = 97/404 (24%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           V  ++  R     + ++S YL+      A  LFD+MP++D VSWN +++G  +  +LG+ 
Sbjct: 71  VIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGEC 130

Query: 72  RRLFDSMPQK----------------------------------------DVVSWNAMLS 91
             +F  M                                           +V   NA+++
Sbjct: 131 LSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVN 190

Query: 92  GYAQNGYADEAREVFYQMP--HKNAISWNGLLAAYVHNGRIEEACRLFDS-------KSD 142
            Y + G+ + A  +F +MP   K+ +SWN ++A    NG   EA   FD          D
Sbjct: 191 MYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDD 250

Query: 143 WELIS---------------------WNC-----------LMGGFVKRKMLGAARKLFDK 170
             ++S                     + C           L+  + K   L  +RK+F++
Sbjct: 251 ATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEE 310

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-----DVFTWTAMVSGYVQNGMLDE 225
           +   D V+W  M++GYA  G   +A   F++   +     D  T+T ++S    +G++ E
Sbjct: 311 ISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKE 370

Query: 226 ARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITG- 278
            + FF  M    ++      Y+ MV    +   +D A EL + MP   N   W  ++   
Sbjct: 371 GKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGAC 430

Query: 279 -YGQNGDIAQ--ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
              +N D+ +  A+ L  + P  D  ++  + + Y+  G + +A
Sbjct: 431 RVHRNIDLGKEAAKNLIALDPS-DPRNYIMLSNMYSAAGLWNDA 473



 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 137/298 (45%), Gaps = 24/298 (8%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           RD    + +++ Y++     DA  LFD MP+KD VSWN+++SG A+ G   E   VF +M
Sbjct: 78  RDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKM 137

Query: 110 PHKNAISWN-----GLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKM 160
              + +  N      +++A V     +E     C        +E+   N L+  + K   
Sbjct: 138 KSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGF 197

Query: 161 LGAARKLFDKM--HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
           + +A +LF +M    + +VSWN++++  AQ+G  ++A N FD       F   A +   +
Sbjct: 198 VESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLL 257

Query: 219 QN------GMLDEAR--TFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS 270
           Q       G + E      F     +N      ++  Y +  +++ +R++FE +   +  
Sbjct: 258 QACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKV 317

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQR-----DCVSWAAIISGYAQTGHYEEALNMF 323
           +W  M+ GY  +G   +A + F+ + +      D V++  ++S  + +G  +E    F
Sbjct: 318 AWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFF 375



 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 349 AALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
           +++ + + IH  V+K+  Y  G F+G+ L+  Y K G   +A  +F+ + +KD VSWN++
Sbjct: 59  SSVSICRIIHAHVIKSLDYRDG-FIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSL 117

Query: 408 IAGYARHGFGKQALMVFESMKTIG-VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY 466
           ++G A+ G   + L VF  MK+   +K +E T + V+SAC      D G  Y +      
Sbjct: 118 VSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGY-YVHCCAMKL 176

Query: 467 SVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP-FEPPAASWGALLGASRIHG 518
            +    K    ++++ G+ G +E A  L   MP  E    SW +++     +G
Sbjct: 177 GLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNG 229


>Medtr5g040920.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:17991225-17993175 | 20130731
          Length = 586

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/510 (41%), Positives = 297/510 (58%), Gaps = 25/510 (4%)

Query: 223 LDEARTFFDQMPQKNEISYNAMVAGYVQSNK--------------MDMARELFEAMP--- 265
           ++ A   FDQ+ Q N + +N M  GY + N               +   + L E      
Sbjct: 77  MEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRLVSKVKALAEGKQLHC 136

Query: 266 -------SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
                  S N+    T+I  Y   GDI  +R++FD + +   V++ AII   A+     E
Sbjct: 137 FAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANE 196

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           AL +F E++  G      T    LS+CA + +L+LG+ +H  V K G++    V   L+ 
Sbjct: 197 ALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLID 256

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY KCGS+ +A +VF  + ++D  +W+ +I  YA HG G QA+ +   MK   V+PDEIT
Sbjct: 257 MYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEIT 316

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            +G+L ACSH GL++ G EYF+ M  +Y + PS KHY CM+DLLGRAGRL+EA   +  +
Sbjct: 317 FLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDEL 376

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
           P +P    W  LL A   HGN E+G++  E +F+++  + G YV+ SNL A  G+W D  
Sbjct: 377 PIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVN 436

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
           ++R  M D G  K+ G S +EV N +H+F  G+  H     ++  L+EL  +++  GYV 
Sbjct: 437 HLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVP 496

Query: 619 STKLVLH-DVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHI 677
            T LV + D+E+EEKE +L+YHSEKLA+ FG+L  P G  IRV+KNLRVC DCHNA K I
Sbjct: 497 DTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFI 556

Query: 678 SKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           S I GR IILRD  RFHHF +G CSCGDYW
Sbjct: 557 SLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 22/285 (7%)

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
           ++ +    T       +  A +LFD + Q + V +  +  GYA+     + L M    +R
Sbjct: 61  ITKFINFCTSNPTKASMEHAHQLFDQITQPNIVLFNTMARGYAR---LNDPLRMITHFRR 117

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
                        L   + + AL  GKQ+H   VK G     +V   L+ MY  CG I  
Sbjct: 118 ------------CLRLVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDA 165

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           +  VF+ I+E  VV++N +I   AR+    +AL +F  ++ IG+KP ++TM+ VLS+C+ 
Sbjct: 166 SRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCAL 225

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
            G +D G  + +   K Y      K  T +ID+  + G L++A ++ R+MP +    +W 
Sbjct: 226 LGSLDLG-RWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMP-KRDTQAWS 283

Query: 509 ALLGASRIHGNTELGEKAAEMV--FKMEPHNSGMYVLLSNLYAAS 551
           A++ A   HG+   G +A  M+   K E         L  LYA S
Sbjct: 284 AIIVAYATHGD---GFQAISMLNEMKKEKVQPDEITFLGILYACS 325



 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 155/350 (44%), Gaps = 41/350 (11%)

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-KSDWELISWNCLMGGFVKR 158
           + A ++F Q+   N + +N +   Y    R+ +  R+    +    L+S         K 
Sbjct: 78  EHAHQLFDQITQPNIVLFNTMARGY---ARLNDPLRMITHFRRCLRLVS---------KV 125

Query: 159 KMLGAARKLF---DKMHVRD-VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMV 214
           K L   ++L     K+ V D +    T+I+ Y   GD+  ++ +FD+     V  + A++
Sbjct: 126 KALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAII 185

Query: 215 SGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPS---- 266
               +N   +EA   F ++ +      +++   +++       +D+ R + E +      
Sbjct: 186 MSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFD 245

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
           R V    T+I  Y + G +  A  +F  MP+RD  +W+AII  YA  G   +A++M  E+
Sbjct: 246 RYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEM 305

Query: 327 KRDGESLNRSTFSCALSTCADIAALELG-KQIHGQ-----VVKTGYETGCFVGNALLGMY 380
           K++    +  TF   L  C+    +E G +  HG      +V +    GC V   LLG  
Sbjct: 306 KKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVD--LLG-- 361

Query: 381 FKCGSIGEANDVFEGIEEKDV-VSWNTMIAGYARHG---FGKQAL-MVFE 425
            + G + EA    + +  K   + W T+++  + HG    GK+ +  +FE
Sbjct: 362 -RAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFE 410



 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 116/257 (45%), Gaps = 33/257 (12%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           +RR+FD + +  VV++NA++   A+N  A+EA  +F ++         GL    V    +
Sbjct: 166 SRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEI------GLKPTDVTMLVV 219

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
             +C L  S    +L  W   M  +VK+         FD    R V    T+I  YA+ G
Sbjct: 220 LSSCALLGS---LDLGRW---MHEYVKKYG-------FD----RYVKVNTTLIDMYAKCG 262

Query: 191 DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVA 246
            +  A N+F   P +D   W+A++  Y  +G   +A +  ++M     Q +EI++  ++ 
Sbjct: 263 SLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILY 322

Query: 247 GYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC- 300
               +  ++   E F  M +      ++  +  M+   G+ G + +A K  D +P +   
Sbjct: 323 ACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTP 382

Query: 301 VSWAAIISGYAQTGHYE 317
           + W  ++S  +  G+ E
Sbjct: 383 ILWRTLLSACSTHGNVE 399



 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 49/247 (19%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ-------------- 49
           G  D++ RVF+ +     V+YNA+I    RN R + A  LF ++ +              
Sbjct: 161 GDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVL 220

Query: 50  --------RDLVSW-----------------NVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
                    DL  W                   ++  Y +   L DA  +F  MP++D  
Sbjct: 221 SSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQ 280

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           +W+A++  YA +G   +A  +  +M       + I++ G+L A  HNG +EE    F   
Sbjct: 281 AWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGM 340

Query: 141 SDW-----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV-VSWNTMISGYAQDGDMSQ 194
           ++       +  + C++    +   L  A K  D++ ++   + W T++S  +  G++  
Sbjct: 341 TNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEM 400

Query: 195 AKNLFDQ 201
            K + ++
Sbjct: 401 GKRVIER 407


>Medtr8g063290.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr8:26513420-26510735 | 20130731
          Length = 659

 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/622 (36%), Positives = 344/622 (55%), Gaps = 25/622 (4%)

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           +FY   H+N      L+ +Y   G      ++FD  SD  ++ +N ++  +V        
Sbjct: 44  IFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDG 103

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDM---SQAKNL-FDQSPHQDV---------FTWT 211
             +F     R++V+       Y     +   S ++NL +    H DV         F   
Sbjct: 104 LLVF-----REMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGN 158

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM------P 265
            +++ Y + G L EAR  FD+M  K+ +S+N+MVAGY  + + D A E+   M      P
Sbjct: 159 GLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKP 218

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
                +          + ++    K+F  + +++ +SW  +I  Y +     +A++++++
Sbjct: 219 DGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQ 278

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +++     +  TF+  L  C D++AL LG++IH  V K        + N+L+ MY +CG 
Sbjct: 279 MEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGC 338

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           + +A  VF+ ++ +DV SW ++I+ Y   G G  A+ +F  M   G  PD I  V +LSA
Sbjct: 339 LDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSA 398

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
           CSH+GL+D G  YF  M  DY +TP  +HY C++DLLGRAGR++EA ++++ MP EP   
Sbjct: 399 CSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNER 458

Query: 506 SWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMR 565
            W  LL + R+  N ++G  AA+ + ++ P  SG YVLLSN+YA +GRW +   +RS M+
Sbjct: 459 VWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMK 518

Query: 566 DVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH 625
              ++K  G S VE+ N++H F  GD  HP+   IY  L  L  KM+  GYV  T   LH
Sbjct: 519 RKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALH 578

Query: 626 DVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLI 685
           DVEEE+KE  L  HSEKLA+ F +L     + IR+ KNLRVC DCH A K ISKIV R I
Sbjct: 579 DVEEEDKEGHLAVHSEKLAIVFALLNTQEYQ-IRITKNLRVCGDCHIAAKLISKIVEREI 637

Query: 686 ILRDSHRFHHFNEGICSCGDYW 707
           I+RD++RFHHF +G+CSCGDYW
Sbjct: 638 IVRDTNRFHHFKDGVCSCGDYW 659



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 185/440 (42%), Gaps = 77/440 (17%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA------------- 71
           N +I+ Y +      AR +FD+M  +D+VSWN M+ GY  N R  DA             
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQK 217

Query: 72  ------------------------RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFY 107
                                    ++F ++ +K+++SWN M+  Y +N    +A +++ 
Sbjct: 218 PDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYL 277

Query: 108 QMP----HKNAISWN------GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVK 157
           QM       +AI++       G L+A +   RI E       K    L+  N L+  + +
Sbjct: 278 QMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVE--KKKLCPNLLLENSLIDMYAR 335

Query: 158 RKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD------QSPHQDVFTWT 211
              L  A+++FD+M  RDV SW ++IS Y   G    A  LF       Q+P  D   + 
Sbjct: 336 CGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAP--DSIAFV 393

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP- 265
           A++S    +G+LDE R +F QM     I+     Y  +V    ++ ++D A  + + MP 
Sbjct: 394 AILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPI 453

Query: 266 SRNVSSWNTMITG--YGQNGDIA--QARKLFDMMPQRDCVSWAAIISG-YAQTGHYEEAL 320
             N   W T+++      N DI    A  L  + P++    +  ++S  YA+ G ++E  
Sbjct: 454 EPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQS--GYYVLLSNIYAKAGRWKEVT 511

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            +   +KR  + + ++     +     +     G   H Q  +   E G  V        
Sbjct: 512 EIRSVMKR--KKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMK---- 565

Query: 381 FKCGSIGEANDVFEGIEEKD 400
            + G + E +     +EE+D
Sbjct: 566 -ELGYVPETDSALHDVEEED 584



 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 166/409 (40%), Gaps = 87/409 (21%)

Query: 176 VVSWNTMISGYAQDGDMSQAKNL----FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
           + S+  +     Q+ D+   K L    F  + HQ+      ++  Y   G     R  FD
Sbjct: 18  LTSFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFD 77

Query: 232 QMPQKNEISYNAMVAGYVQSNKMDMARELFEAM------PSR------------------ 267
           +M  +N + YN M+  YV +++ D    +F  M      P                    
Sbjct: 78  EMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRY 137

Query: 268 ---------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
                          N+   N +I  YG+ G + +AR++FD M  +D VSW ++++GYA 
Sbjct: 138 GLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAH 197

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
              +++AL    EI R+ E   +    C +++            +   V  T  E   +V
Sbjct: 198 NMRFDDAL----EICREMEDYGQKPDGCTMAS------------LMPAVANTSSENVLYV 241

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
                              +F  +E K+++SWN MI  Y ++    QA+ ++  M+   V
Sbjct: 242 -----------------EKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRV 284

Query: 433 KPDEITMVGVLSACS--HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           +PD IT   VL AC    A L+ R    +    K   + P+      +ID+  R G L++
Sbjct: 285 EPDAITFASVLPACGDLSALLLGRRIHEYVEKKK---LCPNLLLENSLIDMYARCGCLDD 341

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSG 539
           A+ +   M F    ASW +L+ A   +G T  G  A  +  +M   NSG
Sbjct: 342 AKRVFDRMKFR-DVASWTSLISA---YGMTGQGCNAVALFTEM--LNSG 384


>Medtr7g016960.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:5362710-5366096 | 20130731
          Length = 654

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 352/625 (56%), Gaps = 34/625 (5%)

Query: 110 PHKNAISWNG--LLAAYVHNGRIEEACRLF-----DSKSDWELISWNCLM------GGFV 156
           P K+  S N   L+ +    G +++A +L       +K  +EL+  +C+       G  V
Sbjct: 37  PTKDIKSNNNDDLIQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDV 96

Query: 157 KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
             +++G+          +D      +I+ Y   G +  A  +FD++  + +F W A+   
Sbjct: 97  HHRLVGSGLD-------QDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRA 149

Query: 217 YVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSN----KMDMARELFEAMPSR- 267
                  ++    + QM       N  +Y  ++   V S      +   +E+   +    
Sbjct: 150 LAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHG 209

Query: 268 ---NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF- 323
              +V    T++  Y + G ++ A  +F  MP ++ VSW+A+I+ YA+     +AL +F 
Sbjct: 210 YEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQ 269

Query: 324 -IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
            + ++      N  T    L  CA +AALE GK +H  V++ G ++   V N L+ MY +
Sbjct: 270 IMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGR 329

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
           CG I     VF+ ++++DV+SWN++I+ Y  HG GK+A+ +FE+M   GV P  IT + V
Sbjct: 330 CGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITV 389

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEP 502
           L ACSHAGL++     F SM   Y + P  +HY CM+D+LGRA RL+EA +L++NM F+P
Sbjct: 390 LCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKP 449

Query: 503 PAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRS 562
               WG+LLG+ RIH N EL E+A+ M+F++EP N+G YVLLS++YA S  W D   +R 
Sbjct: 450 GPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRK 509

Query: 563 RMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKL 622
           ++   G+QK+   SW+EV+ KI+     + ++P+ + + AFL  L  +++ +GYV  T +
Sbjct: 510 QLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNV 569

Query: 623 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVG 682
           V +D++EEEKE ++  HS KLAVAFG++    G  IR+  NLR+CEDCH  +K +SK   
Sbjct: 570 VTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTN 629

Query: 683 RLIILRDSHRFHHFNEGICSCGDYW 707
           R I+LRD +RFH F +G+CSCGDYW
Sbjct: 630 REILLRDVNRFHCFKDGVCSCGDYW 654



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 149/358 (41%), Gaps = 32/358 (8%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA----RRLFDSMPQKD 82
           +I    R      A  L    P     ++ +++   +    L D      RL  S   +D
Sbjct: 49  LIQSLCRGGNLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQD 108

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
                 +++ Y   G  D A +VF +   K    WN +  A     R E+   L+  + +
Sbjct: 109 PYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLY-GQMN 167

Query: 143 WELISWN------CLMGGFVKRKMLGAARK-------LFDKMHVRDVVSWNTMISGYAQD 189
           W  I  N       L    V    +   RK       +    +   V    T++  YA+ 
Sbjct: 168 WIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARF 227

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF--------DQMPQKNEISY 241
           G +S A ++F   P +++ +W+AM++ Y +N M  +A   F        D +P  N I+ 
Sbjct: 228 GYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVP--NPITM 285

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQ 297
            +++        ++  + +   +  R + S     NT+IT YG+ G+I+  +++FD M +
Sbjct: 286 VSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKK 345

Query: 298 RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
           RD +SW ++IS Y   G  ++A+ +F  +   G S +  TF   L  C+    +E  K
Sbjct: 346 RDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAK 403



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 127/267 (47%), Gaps = 30/267 (11%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM------PH 111
           +L  Y R   +  A  +F +MP K++VSW+AM++ YA+N    +A E+F  M        
Sbjct: 220 LLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTV 279

Query: 112 KNAISWNGLLAAY-----VHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARK 166
            N I+   +L A      + +G++  A  +     D  L   N L+  + +   +   ++
Sbjct: 280 PNPITMVSVLQACASLAALEHGKLVHA-YVLRRGLDSTLPVLNTLITMYGRCGEISTGQR 338

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGM 222
           +FD M  RDV+SWN++IS Y   G   +A  +F+   ++ V     T+  ++      G+
Sbjct: 339 VFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGL 398

Query: 223 LDEARTFFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAM---PSRNVSSWNT 274
           ++EA+  F+ M  K  I      Y  MV    ++N++D A EL + M   P   V  W +
Sbjct: 399 VEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTV--WGS 456

Query: 275 MITGYGQNGDIAQARK----LFDMMPQ 297
           ++     + ++  A +    LF++ P+
Sbjct: 457 LLGSCRIHCNVELAERASAMLFELEPK 483



 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 45/183 (24%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLF--------DKMPQ---- 49
           R G+   A  VF  MP ++ VS++AMI+ Y +N     A +LF        D +P     
Sbjct: 226 RFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITM 285

Query: 50  -----------------------------RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ 80
                                          L   N ++T Y R   +   +R+FD M +
Sbjct: 286 VSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKK 345

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNGLLAAYVHNGRIEEACRL 136
           +DV+SWN+++S Y  +G   +A ++F  M ++      I++  +L A  H G +EEA  L
Sbjct: 346 RDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKIL 405

Query: 137 FDS 139
           F+S
Sbjct: 406 FES 408


>Medtr2g071810.1 | PPR containing plant-like protein | HC |
           chr2:30002268-30006207 | 20130731
          Length = 789

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/639 (34%), Positives = 364/639 (56%), Gaps = 48/639 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           RNG+ ++A  +FN M +++ V++ AM++ Y +N + + AR LFD+MP+R   ++N M++G
Sbjct: 42  RNGNVNAAETIFNRMSQKNIVTWTAMLTVYAQNGQITTARKLFDEMPERTTATYNAMISG 101

Query: 62  YVRNR-RLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH--KNAISWN 118
           Y+RN   +  A  LF S   ++ VS+ AM+ G  +    D A +++ + PH  ++ +  N
Sbjct: 102 YIRNGCNVTKAYELFTSFHDRNEVSYAAMIMGLVKARKFDLAEKLYREAPHEFRDPVCSN 161

Query: 119 GLLAAYVHNGRIEEACRLFDSK--SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV 176
            L+  Y+  G + EA R+F++   S  +++SW+ ++GG  +   +  AR LFD+M  R+V
Sbjct: 162 ALINGYLKIGEMNEALRVFENVGVSKRDVVSWSAVVGGLCRDGRIDNARMLFDRMPERNV 221

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF-----TWTAMVSG--------------- 216
           VSW+ MI GY + G       LF     + V      T T M+ G               
Sbjct: 222 VSWSAMIDGYMEKGLFENGFGLFLDMRREGVVEVNSTTMTIMIKGCGNCGRVKEGIQIHG 281

Query: 217 --------------------YVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM 256
                               Y   G  D A+  F  M  K+ +++N++++GY+ +N++D 
Sbjct: 282 LVSRLGFEFGSVLSNTIITMYSLFGYTDMAKKVFSGMGNKDLVTWNSLISGYIYNNEVDA 341

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           A E+FE MP +++ SW  MI G+  +G I +A +LFD + ++D   W  +ISG+     Y
Sbjct: 342 AYEVFERMPEKDLISWTAMIRGFATDGRIGKAVELFDTLKEKDDFVWTVLISGFVSNEEY 401

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           EEAL+ F+ + R+    N  T S  LS  A + AL  G QIH  V+K   E    + N+L
Sbjct: 402 EEALHWFVRMSREQCRPNPLTISSVLSASASLVALNEGLQIHSHVLKMNLEYDLSIQNSL 461

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           +  Y KCG++ +A  +F  + E +VVS+N++I G+A++GFG++AL +++ M+   ++P+ 
Sbjct: 462 ISFYAKCGNVTDAYKIFVDVVEPNVVSYNSVINGFAQNGFGEEALSMYKRMQNESLEPNR 521

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
           +T + VLSAC+HAGLI+ G   F +M   Y + P + HY CM+DLLGRAG L+EA   +R
Sbjct: 522 VTFLAVLSACTHAGLIEEGWNLFNTMKSRYGIEPEADHYACMVDLLGRAGLLDEAIHFVR 581

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD 556
           +MP EP +  WGALL AS  H   +L + AA+ + ++EP N+  YV+LSN Y+ASG+  +
Sbjct: 582 SMPLEPHSGVWGALLAASCAHQRIDLAKLAAQHITELEPANATPYVVLSNTYSASGQKFE 641

Query: 557 AGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHP 595
              +R      G++K  G SW+ +++K  K  +   F+P
Sbjct: 642 GDLVRKTKNLKGIKKSPGCSWITIKDKALKIIL---FYP 677



 Score =  182 bits (461), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 194/390 (49%), Gaps = 41/390 (10%)

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           K +   N  +S   +NG  + A  +F +M  KN ++W  +L  Y  NG+I  A +LFD  
Sbjct: 28  KFITECNVKISENGRNGNVNAAETIFNRMSQKNIVTWTAMLTVYAQNGQITTARKLFDEM 87

Query: 141 SDWELISWNCLMGGFVKRKM-LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF 199
            +    ++N ++ G+++    +  A +LF   H R+ VS+  MI G  +      A+ L+
Sbjct: 88  PERTTATYNAMISGYIRNGCNVTKAYELFTSFHDRNEVSYAAMIMGLVKARKFDLAEKLY 147

Query: 200 DQSPHQ--DVFTWTAMVSGYVQNGMLDEARTFFDQ--MPQKNEISYNAMVAGYVQSNKMD 255
            ++PH+  D     A+++GY++ G ++EA   F+   + +++ +S++A+V G  +  ++D
Sbjct: 148 REAPHEFRDPVCSNALINGYLKIGEMNEALRVFENVGVSKRDVVSWSAVVGGLCRDGRID 207

Query: 256 MARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH 315
            AR LF+ MP RNV SW+ M                               I GY + G 
Sbjct: 208 NARMLFDRMPERNVVSWSAM-------------------------------IDGYMEKGL 236

Query: 316 YEEALNMFIEIKRDG-ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
           +E    +F++++R+G   +N +T +  +  C +   ++ G QIHG V + G+E G  + N
Sbjct: 237 FENGFGLFLDMRREGVVEVNSTTMTIMIKGCGNCGRVKEGIQIHGLVSRLGFEFGSVLSN 296

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
            ++ MY   G    A  VF G+  KD+V+WN++I+GY  +     A  VFE M     + 
Sbjct: 297 TIITMYSLFGYTDMAKKVFSGMGNKDLVTWNSLISGYIYNNEVDAAYEVFERMP----EK 352

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
           D I+   ++   +  G I +  E F ++ +
Sbjct: 353 DLISWTAMIRGFATDGRIGKAVELFDTLKE 382



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 35/295 (11%)

Query: 263 AMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           A  S+ ++  N  I+  G+NG++  A  +F+ M Q++ V+W A+++ YAQ G    A  +
Sbjct: 24  AKGSKFITECNVKISENGRNGNVNAAETIFNRMSQKNIVTWTAMLTVYAQNGQITTARKL 83

Query: 323 FIEI-KRDGESLNRSTFSCALSTCADIAALELGKQIH------------GQVVKTGYETG 369
           F E+ +R   + N        + C    A EL    H            G V    ++  
Sbjct: 84  FDEMPERTTATYNAMISGYIRNGCNVTKAYELFTSFHDRNEVSYAAMIMGLVKARKFDLA 143

Query: 370 -------------CFVGNALLGMYFKCGSIGEANDVFE--GIEEKDVVSWNTMIAGYARH 414
                            NAL+  Y K G + EA  VFE  G+ ++DVVSW+ ++ G  R 
Sbjct: 144 EKLYREAPHEFRDPVCSNALINGYLKIGEMNEALRVFENVGVSKRDVVSWSAVVGGLCRD 203

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKH 474
           G    A M+F+ M    V    ++   ++      GL + G   F  M ++  V  +S  
Sbjct: 204 GRIDNARMLFDRMPERNV----VSWSAMIDGYMEKGLFENGFGLFLDMRREGVVEVNSTT 259

Query: 475 YTCMIDLLGRAGRLEEA---QDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
            T MI   G  GR++E      L+  + FE  +     ++    + G T++ +K 
Sbjct: 260 MTIMIKGCGNCGRVKEGIQIHGLVSRLGFEFGSVLSNTIITMYSLFGYTDMAKKV 314


>Medtr4g094645.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:38635968-38632937 | 20130731
          Length = 694

 Score =  404 bits (1039), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/549 (37%), Positives = 322/549 (58%), Gaps = 45/549 (8%)

Query: 198 LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMA 257
           +F      D F    +++ Y + G L+ A   FD+MP++N +S N M+  Y++   ++ A
Sbjct: 104 IFTSGYSSDKFISNHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENA 163

Query: 258 RELFEAMPSRNVSSWNTMITG---YGQN---------------------GDIAQA----- 288
           + LF+ M  RNV++WN M+TG   +G N                     G + +      
Sbjct: 164 KNLFDEMTERNVATWNAMVTGLVKFGLNEEALLFSRMNVLGFVPDEYSFGSVLRGCAHLR 223

Query: 289 ----------------RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
                            ++   MP  + V+W  +++G AQ   ++  L+ +  +K  G  
Sbjct: 224 ALSVGDRFTLMLRNVGERIIKWMPNCNLVAWNTLMAGKAQNRCFDGVLDHYCMMKMAGYR 283

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            +R TF   +S+C+++A L  GKQIH +V+K G  +   V ++L+ MY KCGS+ ++   
Sbjct: 284 PDRITFVSVISSCSELATLCQGKQIHAEVIKAGASSVVTVISSLVSMYSKCGSLQDSIKA 343

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F   EE+DVV W++MIA Y  HG  ++A+ +F   +   +  +E+T + +L ACSH+GL 
Sbjct: 344 FLECEERDVVLWSSMIAAYGFHGQCEKAIKLFNDKEKENMAGNEVTFLSLLYACSHSGLK 403

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           D+G ++F  M + Y +    +HYTC++DLLGR+G LEEA+ ++R+MP    A  W  LL 
Sbjct: 404 DKGLDFFDMMVEKYGLKARLEHYTCVVDLLGRSGCLEEAETIIRSMPVSADAIIWKTLLS 463

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKV 572
           A +IH N E+  + AE V +++P +   YVL++ ++A++ RW +   +R  M+D  V+K 
Sbjct: 464 ACKIHKNEEMARRVAEEVLRIDPQDPASYVLIAGIHASAKRWQNVSEVRRAMKDKMVKKE 523

Query: 573 TGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEK 632
            G SWVEV+N++H+F +GD  H +   I  +LEEL  +M+ +GYV     VLHD++ EEK
Sbjct: 524 PGVSWVEVKNQVHQFHMGDESHSKFVEINQYLEELTSEMKMQGYVPDISSVLHDMDNEEK 583

Query: 633 EHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHR 692
           E+ L +HSEKLA+AF ++TIP G PIRV+KN+RVC DCH AIK+IS+I    II+RDS R
Sbjct: 584 EYNLTHHSEKLAIAFALMTIPKGEPIRVMKNMRVCGDCHVAIKYISEIKNLEIIVRDSSR 643

Query: 693 FHHFNEGIC 701
           FHHF  G C
Sbjct: 644 FHHFKNGRC 652



 Score = 97.1 bits (240), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 160/341 (46%), Gaps = 38/341 (11%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  ++A+++F+ MPRR+ +S N MI  YL       A++LFD+M +R++ +WN M+TG V
Sbjct: 127 GELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENAKNLFDEMTERNVATWNAMVTGLV 186

Query: 64  RNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQ-------NGYADEAREV----FYQ 108
           +   L +   LF  M       D  S+ ++L G A        + +    R V       
Sbjct: 187 K-FGLNEEALLFSRMNVLGFVPDEYSFGSVLRGCAHLRALSVGDRFTLMLRNVGERIIKW 245

Query: 109 MPHKNAISWNGLLAAYVHN----GRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           MP+ N ++WN L+A    N    G ++  C +  +    + I++  ++    +   L   
Sbjct: 246 MPNCNLVAWNTLMAGKAQNRCFDGVLDHYCMMKMAGYRPDRITFVSVISSCSELATLCQG 305

Query: 165 RKLFDKM------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
           +++  ++       V  V+S  +++S Y++ G +  +   F +   +DV  W++M++ Y 
Sbjct: 306 KQIHAEVIKAGASSVVTVIS--SLVSMYSKCGSLQDSIKAFLECEERDVVLWSSMIAAYG 363

Query: 219 QNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NV 269
            +G  ++A   F+   ++    NE+++ +++     S   D   + F+ M  +      +
Sbjct: 364 FHGQCEKAIKLFNDKEKENMAGNEVTFLSLLYACSHSGLKDKGLDFFDMMVEKYGLKARL 423

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISG 309
             +  ++   G++G + +A  +   MP   D + W  ++S 
Sbjct: 424 EHYTCVVDLLGRSGCLEEAETIIRSMPVSADAIIWKTLLSA 464



 Score = 96.7 bits (239), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 172/382 (45%), Gaps = 26/382 (6%)

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEA 133
           +F S    D    N +L+ Y++ G  + A ++F +MP +N +S N ++ AY+  G IE A
Sbjct: 104 IFTSGYSSDKFISNHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENA 163

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQD 189
             LFD  ++  + +WN ++ G VK   L     LF +M+    V D  S+ +++ G A  
Sbjct: 164 KNLFDEMTERNVATWNAMVTGLVKFG-LNEEALLFSRMNVLGFVPDEYSFGSVLRGCAHL 222

Query: 190 GDMS-----------QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP---- 234
             +S             + +    P+ ++  W  +++G  QN   D     +  M     
Sbjct: 223 RALSVGDRFTLMLRNVGERIIKWMPNCNLVAWNTLMAGKAQNRCFDGVLDHYCMMKMAGY 282

Query: 235 QKNEISYNAMVAGYVQSNKMDMAR----ELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
           + + I++ ++++   +   +   +    E+ +A  S  V+  +++++ Y + G +  + K
Sbjct: 283 RPDRITFVSVISSCSELATLCQGKQIHAEVIKAGASSVVTVISSLVSMYSKCGSLQDSIK 342

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
            F    +RD V W+++I+ Y   G  E+A+ +F + +++  + N  TF   L  C+    
Sbjct: 343 AFLECEERDVVLWSSMIAAYGFHGQCEKAIKLFNDKEKENMAGNEVTFLSLLYACSHSGL 402

Query: 351 LELGKQIHGQVV-KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMI 408
            + G      +V K G +        ++ +  + G + EA  +   +    D + W T++
Sbjct: 403 KDKGLDFFDMMVEKYGLKARLEHYTCVVDLLGRSGCLEEAETIIRSMPVSADAIIWKTLL 462

Query: 409 AGYARHGFGKQALMVFESMKTI 430
           +    H   + A  V E +  I
Sbjct: 463 SACKIHKNEEMARRVAEEVLRI 484



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 36/183 (19%)

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
           I+     GH ++A   F+     G       FS  + +C    ++ LGKQ+H  +  +GY
Sbjct: 54  ITTLCSKGHIKKAFESFLY----GIWTEPRLFSILIQSCIPTNSVSLGKQLHSLIFTSGY 109

Query: 367 ETGCFVGNALLGMYFK---------------------C----------GSIGEANDVFEG 395
            +  F+ N LL  Y K                     C          G+I  A ++F+ 
Sbjct: 110 SSDKFISNHLLNFYSKFGELNNAVKLFDRMPRRNYMSCNIMIKAYLEMGNIENAKNLFDE 169

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           + E++V +WN M+ G  + G  ++AL+ F  M  +G  PDE +   VL  C+H   +  G
Sbjct: 170 MTERNVATWNAMVTGLVKFGLNEEALL-FSRMNVLGFVPDEYSFGSVLRGCAHLRALSVG 228

Query: 456 TEY 458
             +
Sbjct: 229 DRF 231


>Medtr1g059810.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:26032045-26029503 | 20130731
          Length = 633

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/547 (39%), Positives = 321/547 (58%), Gaps = 20/547 (3%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D  + +++I+ Y++      A+ +FD+SP     ++ AM+SGY  N M+ EA   F +M 
Sbjct: 93  DPYTHSSLINMYSKTSLPCLARKVFDESPVNLTISYNAMISGYTNNMMIVEAIKLFRRML 152

Query: 235 QKNEISYNA-----MVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDI 285
            +N    N+     +V+G +   K+ +   L    F+     ++S  N+ +T Y + G++
Sbjct: 153 CENRFFVNSVTMLGLVSGILVPEKLRLGFCLHGCCFKFGFENDLSVGNSFLTMYVKCGEV 212

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR-DGESLNRSTFSCALST 344
              RK+FD +  +D ++W A+ISGYAQ GH    L ++ E+++  G + +  T    L +
Sbjct: 213 EYGRKVFDEILVKDLITWNAMISGYAQNGHARRVLEIYREMRKVGGVNPDPVTLLGVLCS 272

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE--KDVV 402
           CA++ A  +G+++  ++ + G+ +  F+ NAL+ MY +CG++  A +VF+ ++E  K VV
Sbjct: 273 CANLGAQGIGREVEKEIDRFGFRSNSFLMNALINMYARCGNLVRAREVFDCMDERSKSVV 332

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           SW  +I GY  HG G+ A+ +F+ M   GVKPD    V VLSACSHAGL ++G EYF  M
Sbjct: 333 SWTAIIGGYGIHGEGETAVELFDVMVRSGVKPDRTVFVSVLSACSHAGLTEKGLEYFDEM 392

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTEL 522
            + Y + P  +HY+C++DLLGR+GRL+EA DL+  M  +P    WGALLGA +IH N EL
Sbjct: 393 ERKYGLQPGPEHYSCLVDLLGRSGRLKEAMDLIDLMKVKPDGPVWGALLGACKIHRNVEL 452

Query: 523 GEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
            E A + V ++EP N G YVLLSNLY+ +        +R  MRD  ++K  G S+VE + 
Sbjct: 453 AEVAFQHVIELEPTNIGYYVLLSNLYSDTKNLEGVLKVRVMMRDRNLRKDPGCSYVEYKG 512

Query: 583 KIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHML--KYHS 640
           K+H F  GD  HP+   IY  L EL      E  V       H  + + +E ++    HS
Sbjct: 513 KMHLFYSGDTSHPQSKEIYRMLNEL------ENLVKDIHGKDHKCQGKSEEPLIGAGVHS 566

Query: 641 EKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGI 700
           EKLA+AF +L    G  I V+KNLRVC DCH   K +SKIV R  I+RD+ RFH F  G+
Sbjct: 567 EKLAIAFALLNTKPGTDITVMKNLRVCVDCHVFFKLVSKIVDRQFIVRDATRFHRFKNGV 626

Query: 701 CSCGDYW 707
           CSC DYW
Sbjct: 627 CSCKDYW 633



 Score =  102 bits (255), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 145/320 (45%), Gaps = 68/320 (21%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM--------------------- 47
           A +VF+  P   ++SYNAMISGY  N     A  LF +M                     
Sbjct: 113 ARKVFDESPVNLTISYNAMISGYTNNMMIVEAIKLFRRMLCENRFFVNSVTMLGLVSGIL 172

Query: 48  -PQR------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNA 88
            P++                  DL   N  LT YV+   +   R++FD +  KD+++WNA
Sbjct: 173 VPEKLRLGFCLHGCCFKFGFENDLSVGNSFLTMYVKCGEVEYGRKVFDEILVKDLITWNA 232

Query: 89  MLSGYAQNGYADEAREVFYQM-----PHKNAISWNGLLAAYVHNG------RIEEACRLF 137
           M+SGYAQNG+A    E++ +M      + + ++  G+L +  + G       +E+    F
Sbjct: 233 MISGYAQNGHARRVLEIYREMRKVGGVNPDPVTLLGVLCSCANLGAQGIGREVEKEIDRF 292

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--DVVSWNTMISGYAQDGDMSQA 195
             +S+  L+  N L+  + +   L  AR++FD M  R   VVSW  +I GY   G+   A
Sbjct: 293 GFRSNSFLM--NALINMYARCGNLVRAREVFDCMDERSKSVVSWTAIIGGYGIHGEGETA 350

Query: 196 KNLFD------QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAM 244
             LFD        P + VF   +++S     G+ ++   +FD+M +K  +      Y+ +
Sbjct: 351 VELFDVMVRSGVKPDRTVF--VSVLSACSHAGLTEKGLEYFDEMERKYGLQPGPEHYSCL 408

Query: 245 VAGYVQSNKMDMARELFEAM 264
           V    +S ++  A +L + M
Sbjct: 409 VDLLGRSGRLKEAMDLIDLM 428



 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 175/393 (44%), Gaps = 45/393 (11%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +  T  +    +++++I+ Y + +   LAR +FD+ P    +S+N M++GY  N  + +A
Sbjct: 85  ILKTGSQPDPYTHSSLINMYSKTSLPCLARKVFDESPVNLTISYNAMISGYTNNMMIVEA 144

Query: 72  RRLFDSM--PQKDVVSWNAMLSGYAQNGYADEAREVF------YQMPHKNAISW-NGLLA 122
            +LF  M    +  V+   ML   +     ++ R  F      ++   +N +S  N  L 
Sbjct: 145 IKLFRRMLCENRFFVNSVTMLGLVSGILVPEKLRLGFCLHGCCFKFGFENDLSVGNSFLT 204

Query: 123 AYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM-HVRDVVSWNT 181
            YV  G +E   ++FD     +LI+WN ++ G+ +    G AR++ +    +R V   N 
Sbjct: 205 MYVKCGEVEYGRKVFDEILVKDLITWNAMISGYAQN---GHARRVLEIYREMRKVGGVNP 261

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDV-------------FTWTAMVSGYVQNGMLDEART 228
                   G +    NL  Q   ++V             F   A+++ Y + G L  AR 
Sbjct: 262 --DPVTLLGVLCSCANLGAQGIGREVEKEIDRFGFRSNSFLMNALINMYARCGNLVRARE 319

Query: 229 FFDQMPQKNE--ISYNAMVAGYVQSNKMDMARELFEAM------PSRNVSSWNTMITGYG 280
            FD M ++++  +S+ A++ GY    + + A ELF+ M      P R V  + ++++   
Sbjct: 320 VFDCMDERSKSVVSWTAIIGGYGIHGEGETAVELFDVMVRSGVKPDRTV--FVSVLSACS 377

Query: 281 QNGDIAQARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNM--FIEIKRDGESL 333
             G   +  + FD M ++  +      ++ ++    ++G  +EA+++   +++K DG   
Sbjct: 378 HAGLTEKGLEYFDEMERKYGLQPGPEHYSCLVDLLGRSGRLKEAMDLIDLMKVKPDGPVW 437

Query: 334 NRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
                +C +    ++A +     I  +    GY
Sbjct: 438 GALLGACKIHRNVELAEVAFQHVIELEPTNIGY 470



 Score = 60.1 bits (144), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQ 356
           Q    +W   +   ++   + EAL ++  + R     N  TF   L +CA ++    G Q
Sbjct: 21  QNPTTAWNCYLRELSKQRKFMEALTVYRHMLRSSFFPNTFTFPVLLKSCALLSLPFTGSQ 80

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGF 416
           +H  ++KTG +   +  ++L+ MY K      A  VF+       +S+N MI+GY  +  
Sbjct: 81  LHSHILKTGSQPDPYTHSSLINMYSKTSLPCLARKVFDESPVNLTISYNAMISGYTNNMM 140

Query: 417 GKQALMVFESMKTIG-VKPDEITMVGVLSA 445
             +A+ +F  M        + +TM+G++S 
Sbjct: 141 IVEAIKLFRRMLCENRFFVNSVTMLGLVSG 170


>Medtr6g060510.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:20818019-20812038 | 20130731
          Length = 1056

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 333/562 (59%), Gaps = 19/562 (3%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQD-----GDMSQAKNLFDQS---PHQDVFTWTA 212
           L  A KLFD++   D+  +NTMI  ++         ++  ++L   S   P++  F +  
Sbjct: 59  LTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAF 118

Query: 213 MVSGYVQNGM-LDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
              G   NGM + E    F    +     N    NA++  + +  +++ AR +F++   R
Sbjct: 119 GACG---NGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDR 175

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           +  SWNTMI  Y  +G++  A++LFD M +RD VSW+ II+GY Q G + EAL+ F ++ 
Sbjct: 176 DFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKML 235

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           +     N  T   AL+ C+++ AL+ GK IH  + +   +    +  +L+ MY KCG I 
Sbjct: 236 QSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEID 295

Query: 388 EANDVF-EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
            A+ VF E   ++ V  WN MI G+A HG  ++A+ VFE MK   V P+++T + +L+AC
Sbjct: 296 SASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNAC 355

Query: 447 SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS 506
           SH  ++  G  YF  M  DY + P  +HY CM+DLL R+G L+++++++ +MP  P  A 
Sbjct: 356 SHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAI 415

Query: 507 WGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMR- 565
           WGALL A RI+ + E G +   ++ +++P++ G  VLL N+Y+ SGRW +A  +R +   
Sbjct: 416 WGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEI 475

Query: 566 DVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH 625
           +   +K+ G+S +E+    H+F VGD  HP+   IY+FL+E+  K++  GYV     VL 
Sbjct: 476 NSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLL 535

Query: 626 DV-EEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRL 684
           D  +EE+KE  L  HSEKLA+AFG++    G PIR++KNLRVC DCH A K ISK+  R+
Sbjct: 536 DFDDEEDKETALSVHSEKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRV 595

Query: 685 IILRDSHRFHHFNEGICSCGDY 706
           II+RD  R+HHF +GICSC DY
Sbjct: 596 IIVRDRMRYHHFKDGICSCKDY 617



 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 164/378 (43%), Gaps = 84/378 (22%)

Query: 20  SSVSYNAMISGYLRN---ARFSLARDLFDKMPQRDLVSWNVMLTGY-VRNRRLGDARRLF 75
           + ++   + + +L+N   A  + A  LFD++PQ DL  +N M+  + +      D+  +F
Sbjct: 39  AQITLPVIANKFLKNVALASLTYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVF 98

Query: 76  DSMPQKDVVSWNAMLSGYAQNGYA--------------DEAREVFYQMPH----KNAISW 117
            S+ +          SGY  N Y+               E  +VF          N    
Sbjct: 99  RSLIRD---------SGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVV 149

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
           N L+  +   GR+E+A  +FDS  D +  SWN ++G +V    +  A++LFD+MH RDVV
Sbjct: 150 NALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVV 209

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQM 233
           SW+T+I+GY Q G   +A + F +    +V    +T  + ++       LD+ + +    
Sbjct: 210 SWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGK-WIHVY 268

Query: 234 PQKNEISYN-----AMVAGYVQSNKMDMARELF-EAMPSRNVSSWNTMITGYGQNGDIAQ 287
            +++ I  N     +++  Y +  ++D A  +F E    R V  WN MI G         
Sbjct: 269 IRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGG--------- 319

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
                                 +A  G  EEA+N+F ++K +  S N+ TF   L+ C+ 
Sbjct: 320 ----------------------FAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACS- 356

Query: 348 IAALELGKQIHGQVVKTG 365
                     HG +VK G
Sbjct: 357 ----------HGYMVKEG 364



 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 42/311 (13%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  + A  VF++   R   S+N MI  Y+ +    LA++LFD+M +RD+VSW+ ++ GYV
Sbjct: 160 GRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYV 219

Query: 64  RNRRLGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
           +     +A   F  M Q +V     +  + L+  +     D+ + +   +   N    + 
Sbjct: 220 QVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDR 279

Query: 120 LLAA----YVHNGRIEEACRLF-DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           LLA+    Y   G I+ A  +F + K   ++  WN ++GGF        A  +F+KM V 
Sbjct: 280 LLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVE 339

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
            V                         SP++   T+ A+++      M+ E +++F+ M 
Sbjct: 340 KV-------------------------SPNK--VTFIALLNACSHGYMVKEGKSYFELMA 372

Query: 235 QKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQA 288
               I+     Y  MV    +S  +  + E+  +MP + +V+ W  ++       D+ + 
Sbjct: 373 SDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERG 432

Query: 289 RKLFDMMPQRD 299
            ++  ++ + D
Sbjct: 433 YRIGRIIKEID 443


>Medtr5g008260.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:1721493-1719058 | 20130731
          Length = 774

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/733 (33%), Positives = 383/733 (52%), Gaps = 48/733 (6%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISG-----YLRNARFSLARDLFDKMP--QRDLVSWN 56
           G+ + AL +  T P  +   Y  +        Y++    +L   + +K P  Q D+   N
Sbjct: 61  GNLEKALSLVYTNPSLTLQDYAFLFHACAQKKYIKQG-MALHHYILNKHPKIQNDIFLTN 119

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP---HKN 113
            +L  Y +   L  AR LFD MP+++ VSW  ++SGYAQ G   E   +F  M      N
Sbjct: 120 NLLNMYCKCGHLDYARYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLACFRPN 179

Query: 114 AISWNGLLAA----------YVHNGRIEEACRLFDSKSDWELISWNCLMGGF--VKRKML 161
             ++  +L A           VH   ++ +       ++  +  ++   GGF     +  
Sbjct: 180 EFAFASVLCACEEQDVKYGLQVHAAALKMSLDFSVYVANALITMYSKCSGGFGGSCDQTT 239

Query: 162 GAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV-FTWTAMVSGYVQN 220
             A  +F  M  R+++SWN+MISG+   G   +A  LF       + F  T ++      
Sbjct: 240 DDAWMVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFNSTTLL------ 293

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYG 280
           G+L         M   ++I+    +    Q + + +   L        V     ++  Y 
Sbjct: 294 GVLSSLN---HCMSTSDDINNTHHLKNCFQLHCLTVKSGLIS-----EVEVVTALVKSYA 345

Query: 281 Q-NGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
              G I+   KLF D   + D VSW AIIS +A+    E+A  +F ++ R+   L+R TF
Sbjct: 346 DLGGHISDCFKLFLDTSGEHDIVSWTAIISVFAERDP-EQAFLLFCQLHRENFVLDRHTF 404

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
           S AL  CA     +   ++H QV+K G+     V NAL+  Y + GS+  +  VF  +  
Sbjct: 405 SIALKACAYFVTEKNATEVHSQVMKQGFHNDTVVSNALIHAYGRSGSLALSEQVFTEMGC 464

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            D+VSWN+M+  YA HG  K AL +F+ M    V PD  T V +L+ACSHAGL++ GT+ 
Sbjct: 465 HDLVSWNSMLKSYAIHGRAKDALDLFKQMD---VHPDSATFVALLAACSHAGLVEEGTQI 521

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           F SM + + + P   HY+CM+DL GRAG++ EA++L+R MP +P +  W +LLG+ R HG
Sbjct: 522 FNSMTESHGIAPHLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHG 581

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
             +L + AA+    ++P NS  Y+ +SN+Y++ G + +AG +R  MRD  V+K  G SWV
Sbjct: 582 EADLAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWV 641

Query: 579 EVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKY 638
           EV  ++H+FT G   HP++  I + LE L  +++  GY       LHD+E E  E  L +
Sbjct: 642 EVGKQVHEFTSGGQHHPKRQAILSRLETLIGQLKEMGYAPEIGSALHDIEVEHIEDQLFH 701

Query: 639 HSEKLAVAFGI----LTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFH 694
           HSEK+A+ F I    ++  AG  I+++KN+R+C DCHN +K  SK+  + I++RDS+RFH
Sbjct: 702 HSEKMALVFAIMNEGISPCAGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFH 761

Query: 695 HFNEGICSCGDYW 707
           HF    CSC DYW
Sbjct: 762 HFKYATCSCNDYW 774



 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 129/279 (46%), Gaps = 36/279 (12%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
           NT I   +  G++ +A +L   +P                +  L +    F    QK  I
Sbjct: 51  NTQIHTLSLQGNLEKALSLVYTNP----------------SLTLQDYAFLFHACAQKKYI 94

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
                +  Y+ +    +  ++F           N ++  Y + G +  AR LFD MP+R+
Sbjct: 95  KQGMALHHYILNKHPKIQNDIFLT---------NNLLNMYCKCGHLDYARYLFDQMPRRN 145

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHG 359
            VSW  ++SGYAQ G   E   +F  +       N   F+  L  C +   ++ G Q+H 
Sbjct: 146 FVSWTVLVSGYAQFGLIRECFALFSGMLACFRP-NEFAFASVLCACEE-QDVKYGLQVHA 203

Query: 360 QVVKTGYETGCFVGNALLGMYFKC-----GSIGEAND----VFEGIEEKDVVSWNTMIAG 410
             +K   +   +V NAL+ MY KC     GS  +  D    VF+ +E ++++SWN+MI+G
Sbjct: 204 AALKMSLDFSVYVANALITMYSKCSGGFGGSCDQTTDDAWMVFKSMEYRNLISWNSMISG 263

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
           +   G G +A+ +F  M   G++ +  T++GVLS+ +H 
Sbjct: 264 FQFRGLGDKAIGLFAHMYCNGIRFNSTTLLGVLSSLNHC 302


>Medtr7g011840.1 | PPR containing plant-like protein | HC |
           chr7:3275571-3278623 | 20130731
          Length = 605

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/542 (38%), Positives = 322/542 (59%), Gaps = 13/542 (2%)

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS--KSDWELI 146
           +++ Y+       A  VF Q+P  N   +N L+ AY  +G    +   F    K   + +
Sbjct: 60  LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119

Query: 147 SWNCLMGGFVKRKMLGAARKL-FDKM---HVR------DVVSWNTMISGYAQDGDMSQAK 196
             +     F+ +   G++  L   KM   HV       D+   N++I  Y + GD+  A 
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM 256
            +F     +DV +W +MV G V+NG LD A   FD+MP+++ +S+N M+ G+ ++ +MD 
Sbjct: 180 KVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDK 239

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           A +LFE M  R++ SW+TM+ GY +NGD+  AR LFD  P ++ V W  IISGYA+ G  
Sbjct: 240 AFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQV 299

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           +EA+N+  E+++ G  L+   F   L+ CA+   L LGK++H   +++ +     V N+ 
Sbjct: 300 KEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSF 359

Query: 377 LGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           + MY KCG + +A  VF G++ EKD+VSWN+MI G+  HG G++++ +F +M   G KPD
Sbjct: 360 IDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPD 419

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
             T +G+L AC+HAGL++ G  YFYSM + Y + P  +HY CM+DLLGR G L+EA  L+
Sbjct: 420 RYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLV 479

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
           R+MPFEP A   G LLGA R+H + +L    ++ +FK+ P + G + LLSN+YA SG W 
Sbjct: 480 RSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWI 539

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +   +R +M D G QK +G S +EV+ ++H+FTV D  HP+   IY  ++ L   +R+ G
Sbjct: 540 NVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQVG 599

Query: 616 YV 617
           YV
Sbjct: 600 YV 601



 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 173/369 (46%), Gaps = 55/369 (14%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           R G  + A++VF+ M  R  VS+N+M+ G ++N     A  +FD+MP+RD VSWN ML G
Sbjct: 171 RCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDG 230

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           + +   +  A +LF+ M ++D+VSW+ M+ GY++NG  D AR +F + P KN + W  ++
Sbjct: 231 FTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTII 290

Query: 122 AAYVHNGRIEEACRLFD--SKSDWELIS--WNCLMGGFVKRKMLGAARKLFDKM------ 171
           + Y   G+++EA  L D   KS   L    +  ++    +  MLG  +K+ D        
Sbjct: 291 SGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFR 350

Query: 172 ------------------------------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
                                           +D+VSWN+MI G+   G   ++  LF+ 
Sbjct: 351 CSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNT 410

Query: 202 SPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAMVAGYVQSN 252
              +    D +T+  ++      G+++E R +F  M +   I      Y  MV    +  
Sbjct: 411 MVREGFKPDRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGG 470

Query: 253 KMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQA----RKLFDMMPQRDCVSWAAII 307
            +  A  L  +MP   N     T++     + D+  A    + LF ++P  D  +++ + 
Sbjct: 471 HLKEAFWLVRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPS-DPGNFSLLS 529

Query: 308 SGYAQTGHY 316
           + YAQ+G +
Sbjct: 530 NIYAQSGDW 538



 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 150/313 (47%), Gaps = 36/313 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++I  Y R     +A  +F  M +RD+VSWN M+ G V+N  L  A ++FD MP++D V
Sbjct: 163 NSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRV 222

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           SWN ML G+ + G  D+A ++F +M  ++ +SW+ ++  Y  NG ++ A  LFD      
Sbjct: 223 SWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKN 282

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
           L+ W  ++ G+ ++  +  A  L D+M            SG   D               
Sbjct: 283 LVLWTTIISGYAEKGQVKEAMNLCDEMEK----------SGLRLD--------------- 317

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMAREL 260
            D F + ++++   ++GML   +   D   +     +    N+ +  Y +   +D A  +
Sbjct: 318 -DGF-FISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRV 375

Query: 261 FEAMPS-RNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGH 315
           F  M + +++ SWN+MI G+G +G   ++ +LF+ M +     D  ++  ++      G 
Sbjct: 376 FNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLCACTHAGL 435

Query: 316 YEEALNMFIEIKR 328
             E    F  ++R
Sbjct: 436 VNEGRGYFYSMQR 448


>Medtr7g103230.1 | PPR containing plant-like protein | HC |
           chr7:41735375-41738881 | 20130731
          Length = 970

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 249/766 (32%), Positives = 396/766 (51%), Gaps = 78/766 (10%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP-----QRDLVSWNVMLTGYV 63
           A R+F +    + VSY+A+IS + ++ R   +  LF  M      + +  ++  +LT   
Sbjct: 117 AHRLFLSQSPPNIVSYSALISAFSKSNREKQSLFLFLHMITVSSLRPNHYTYVAVLTACT 176

Query: 64  RNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
           R   L    +L  ++ +    K V   NA++  Y++ G+   A +VF +MP ++  SWN 
Sbjct: 177 RILNLQFGLQLHAAVIKTGYLKSVFVSNALMLFYSKCGFYKNAFKVFDEMPERDIASWNT 236

Query: 120 LLAAYVHNGRIEEACRLFDS-------KSDWELISW---NCLMGGFVK--RKMLGAARK- 166
           +++  V     ++  RLF         K D+  +S     C   G +   +++   A K 
Sbjct: 237 VMSCAVQEFMYDDVFRLFCDMLVIDGLKVDYFTLSTFLTACAASGLLMEGKQVHAHAVKV 296

Query: 167 -LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
            L D+++V      N +I  Y   GD+     LF++   +DV TWT MV  Y++ G +D 
Sbjct: 297 GLEDELNVG-----NALIGFYTNFGDIDDVVCLFERMSVRDVITWTEMVRVYMEFGFVDL 351

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMIT-------- 277
               FD+MP+KN ++YN +++G  ++ +   A ELF  M    V   +  ++        
Sbjct: 352 GLKIFDEMPEKNCVTYNVLLSGLCRNAEGLKAVELFIRMVEEGVELTDFSLSSGINACSL 411

Query: 278 -----------------GYGQN--------------GDIAQARKLFDMMPQRDCVSWAAI 306
                            G+G N              G +  A K+++ + +   V W ++
Sbjct: 412 LADYRVSRQMHGFAIKFGFGSNVFVEGALLDMYTRCGRMVDAEKMWEELEEVSSVVWTSM 471

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGES-----LNRSTFSCALSTCADIAALELGKQIHGQV 361
           + GYA+ G   EA ++F      G S     ++    +  LS C  +   ++GKQIH QV
Sbjct: 472 MCGYARNGQPREAFSLF----HLGHSEWKLIMDEVALTSMLSLCGTVGYHDMGKQIHCQV 527

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           +K G+ +   VGN ++ MYFKCG++ +A  +F G+   D+VSWNT+I+GY  H  G +AL
Sbjct: 528 LKFGFHSNVQVGNVVVEMYFKCGNVDDAIKMFSGMASTDIVSWNTLISGYLTHRQGDRAL 587

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGL--IDRGTEYFYSMNKDYSVTPSSKHYTCMI 479
            ++  M+  G+KPD+IT V ++SA     L  +D     F SM   Y + P+S+HY+  I
Sbjct: 588 EIWLKMQEEGIKPDDITFVLIISAYRQTSLNLVDDCRILFNSMKTVYHIEPTSQHYSSFI 647

Query: 480 DLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSG 539
            +LG  G LEEA + +  M F+P A  W ALL   R+H NT +G+ AA+ +  +EP++  
Sbjct: 648 SVLGHWGLLEEALETINKMSFKPSAFVWRALLDGCRLHKNTMIGKLAAKNILALEPNDPS 707

Query: 540 MYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDR 599
            Y+L+SNL+++SGRW  +   R  MR+ G +K    SW+  + K+H F   D  H +   
Sbjct: 708 TYILVSNLHSSSGRWDCSERTRENMREKGFRKHPAQSWIICRKKMHSFYARDRSHQQDKD 767

Query: 600 IYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIR 659
           IY  LE L L+  + GY   T  VLH+VEE +K+  L  HS KLA A+G+L    G+PIR
Sbjct: 768 IYRGLEILILECLKVGYEPETSFVLHEVEEHQKKKFLFNHSSKLAAAYGLLMTKPGKPIR 827

Query: 660 VIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGD 705
           ++KN+ +C DCH  +K  S +  R I LRDS  FH F++G CSC D
Sbjct: 828 IVKNILLCGDCHTFLKCASFVTKRDIFLRDSSGFHCFSDGQCSCKD 873



 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 235/500 (47%), Gaps = 32/500 (6%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           +++ Y+  R    A RLF S    ++VS++A++S ++++    ++  +F  M   +++  
Sbjct: 104 LISTYINLRLFSYAHRLFLSQSPPNIVSYSALISAFSKSNREKQSLFLFLHMITVSSLRP 163

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWEL-------------ISWNCLMGGFVKRKMLGAA 164
           N     Y +   +    R+ + +   +L                N LM  + K      A
Sbjct: 164 NH----YTYVAVLTACTRILNLQFGLQLHAAVIKTGYLKSVFVSNALMLFYSKCGFYKNA 219

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQ 219
            K+FD+M  RD+ SWNT++S   Q+        LF           D FT +  ++    
Sbjct: 220 FKVFDEMPERDIASWNTVMSCAVQEFMYDDVFRLFCDMLVIDGLKVDYFTLSTFLTACAA 279

Query: 220 NGMLDEARTFFDQMPQ---KNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
           +G+L E +       +   ++E++  NA++  Y     +D    LFE M  R+V +W  M
Sbjct: 280 SGLLMEGKQVHAHAVKVGLEDELNVGNALIGFYTNFGDIDDVVCLFERMSVRDVITWTEM 339

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           +  Y + G +    K+FD MP+++CV++  ++SG  +     +A+ +FI +  +G  L  
Sbjct: 340 VRVYMEFGFVDLGLKIFDEMPEKNCVTYNVLLSGLCRNAEGLKAVELFIRMVEEGVELTD 399

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            + S  ++ C+ +A   + +Q+HG  +K G+ +  FV  ALL MY +CG + +A  ++E 
Sbjct: 400 FSLSSGINACSLLADYRVSRQMHGFAIKFGFGSNVFVEGALLDMYTRCGRMVDAEKMWEE 459

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFE-SMKTIGVKPDEITMVGVLSACSHAGLIDR 454
           +EE   V W +M+ GYAR+G  ++A  +F        +  DE+ +  +LS C   G  D 
Sbjct: 460 LEEVSSVVWTSMMCGYARNGQPREAFSLFHLGHSEWKLIMDEVALTSMLSLCGTVGYHDM 519

Query: 455 GTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS 514
           G +    + K +    + +    ++++  + G +++A  +   M       SW  L+   
Sbjct: 520 GKQIHCQVLK-FGFHSNVQVGNVVVEMYFKCGNVDDAIKMFSGMA-STDIVSWNTLISGY 577

Query: 515 RIHGNTELGEKAAEMVFKME 534
             H     G++A E+  KM+
Sbjct: 578 LTHRQ---GDRALEIWLKMQ 594



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 165/403 (40%), Gaps = 65/403 (16%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-----PQRDLVSWN 56
           + G   +A +VF+ MP R   S+N ++S  ++   +     LF  M      + D  + +
Sbjct: 212 KCGFYKNAFKVFDEMPERDIASWNTVMSCAVQEFMYDDVFRLFCDMLVIDGLKVDYFTLS 271

Query: 57  VMLTG-----------------------------------YVRNRRLGDARRLFDSMPQK 81
             LT                                    Y     + D   LF+ M  +
Sbjct: 272 TFLTACAASGLLMEGKQVHAHAVKVGLEDELNVGNALIGFYTNFGDIDDVVCLFERMSVR 331

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGR-----------I 130
           DV++W  M+  Y + G+ D   ++F +MP KN +++N LL+    N             +
Sbjct: 332 DVITWTEMVRVYMEFGFVDLGLKIFDEMPEKNCVTYNVLLSGLCRNAEGLKAVELFIRMV 391

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL-FDKMHVRDVVSWNTMISGYAQD 189
           EE   L D      + + + L    V R+M G A K  F      +V     ++  Y + 
Sbjct: 392 EEGVELTDFSLSSGINACSLLADYRVSRQMHGFAIKFGFGS----NVFVEGALLDMYTRC 447

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK-----NEISYNAM 244
           G M  A+ ++++        WT+M+ GY +NG   EA + F     +     +E++  +M
Sbjct: 448 GRMVDAEKMWEELEEVSSVVWTSMMCGYARNGQPREAFSLFHLGHSEWKLIMDEVALTSM 507

Query: 245 VAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
           ++        DM +++   +       NV   N ++  Y + G++  A K+F  M   D 
Sbjct: 508 LSLCGTVGYHDMGKQIHCQVLKFGFHSNVQVGNVVVEMYFKCGNVDDAIKMFSGMASTDI 567

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALS 343
           VSW  +ISGY      + AL ++++++ +G   +  TF   +S
Sbjct: 568 VSWNTLISGYLTHRQGDRALEIWLKMQEEGIKPDDITFVLIIS 610



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 159/342 (46%), Gaps = 37/342 (10%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR--DLVSWNV- 57
           M  G  D  L++F+ MP ++ V+YN ++SG  RNA    A +LF +M +   +L  +++ 
Sbjct: 344 MEFGFVDLGLKIFDEMPEKNCVTYNVLLSGLCRNAEGLKAVELFIRMVEEGVELTDFSLS 403

Query: 58  -------MLTGYVRNRRL-GDARRL-FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
                  +L  Y  +R++ G A +  F S    +V    A+L  Y + G   +A +++ +
Sbjct: 404 SGINACSLLADYRVSRQMHGFAIKFGFGS----NVFVEGALLDMYTRCGRMVDAEKMWEE 459

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFD-SKSDWELISWNCLMGGFVKRKMLGAARKL 167
           +   +++ W  ++  Y  NG+  EA  LF    S+W+LI     +   +          +
Sbjct: 460 LEEVSSVVWTSMMCGYARNGQPREAFSLFHLGHSEWKLIMDEVALTSMLSLCGTVGYHDM 519

Query: 168 FDKMHVR--------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQ 219
             ++H +        +V   N ++  Y + G++  A  +F      D+ +W  ++SGY+ 
Sbjct: 520 GKQIHCQVLKFGFHSNVQVGNVVVEMYFKCGNVDDAIKMFSGMASTDIVSWNTLISGYLT 579

Query: 220 NGMLDEARTFFDQMPQK----NEISYNAMVAGYVQS--NKMDMARELFEAMPS-----RN 268
           +   D A   + +M ++    ++I++  +++ Y Q+  N +D  R LF +M +       
Sbjct: 580 HRQGDRALEIWLKMQEEGIKPDDITFVLIISAYRQTSLNLVDDCRILFNSMKTVYHIEPT 639

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISG 309
              +++ I+  G  G + +A +  + M  +     W A++ G
Sbjct: 640 SQHYSSFISVLGHWGLLEEALETINKMSFKPSAFVWRALLDG 681



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 153/367 (41%), Gaps = 46/367 (12%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  D  + +F  M  R  +++  M+  Y+      L   +FD+MP+++ V++NV+L+G  
Sbjct: 316 GDIDDVVCLFERMSVRDVITWTEMVRVYMEFGFVDLGLKIFDEMPEKNCVTYNVLLSGLC 375

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW------ 117
           RN     A  LF  M ++ V   +  LS             V  QM H  AI +      
Sbjct: 376 RNAEGLKAVELFIRMVEEGVELTDFSLSSGINACSLLADYRVSRQM-HGFAIKFGFGSNV 434

Query: 118 ---NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH-- 172
                LL  Y   GR+ +A ++++   +   + W  +M G+ +    G  R+ F   H  
Sbjct: 435 FVEGALLDMYTRCGRMVDAEKMWEELEEVSSVVWTSMMCGYARN---GQPREAFSLFHLG 491

Query: 173 ------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGM 222
                 + D V+  +M+S     G     K +  Q      H +V     +V  Y + G 
Sbjct: 492 HSEWKLIMDEVALTSMLSLCGTVGYHDMGKQIHCQVLKFGFHSNVQVGNVVVEMYFKCGN 551

Query: 223 LDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITG 278
           +D+A   F  M   + +S+N +++GY+   + D A E++  M    +     ++  +I+ 
Sbjct: 552 VDDAIKMFSGMASTDIVSWNTLISGYLTHRQGDRALEIWLKMQEEGIKPDDITFVLIISA 611

Query: 279 YGQNG--DIAQARKLFDMMP-----QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
           Y Q     +   R LF+ M      +     +++ IS     G  EEAL          E
Sbjct: 612 YRQTSLNLVDDCRILFNSMKTVYHIEPTSQHYSSFISVLGHWGLLEEAL----------E 661

Query: 332 SLNRSTF 338
           ++N+ +F
Sbjct: 662 TINKMSF 668


>Medtr8g105210.1 | PPR containing plant-like protein | HC |
           chr8:44370221-44373841 | 20130731
          Length = 959

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/685 (32%), Positives = 365/685 (53%), Gaps = 56/685 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN----RRLGDARRLFDSMPQ 80
           +++I  Y  N     A+ LFD++P RD + WNVML GYV+N      LG  + + +S  +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 81  KDVVSW-----------------------------------NAMLSGYAQNGYADEAREV 105
            + VS+                                   N +++ Y++ G   +AR++
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
           F  MP  + ++WNGL+A YV NG  +EA  LF +     +   +     F+   +   + 
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL 395

Query: 166 KLFDKMH---VR-----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY 217
           K   ++H   VR     DV   + ++  Y + GD+  A   F Q+   DV   TAM+SGY
Sbjct: 396 KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGY 455

Query: 218 VQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR---NVS 270
           V NG+  EA   F  + Q+    N ++  +++        + + +EL   +  +   NV 
Sbjct: 456 VLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVC 515

Query: 271 SWNTMIT-GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
              + IT  Y ++G +  A + F  MP +D V W  +I  ++Q G  E A+++F ++   
Sbjct: 516 QVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTS 575

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
           G   +  + S  LS CA+  AL  GK++H  VV+  + +  FV + L+ MY KCG +  A
Sbjct: 576 GTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALA 635

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             VF+ ++ K+ VSWN++IA Y  HG  ++ L +F  M   G++PD +T + ++SAC HA
Sbjct: 636 RSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHA 695

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
           GL+D G  YF  M ++Y +    +H+ CM+DL GRAGRL EA D +++MPF P A +WG+
Sbjct: 696 GLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGS 755

Query: 510 LLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGV 569
           LLGA R+HGN EL + A++ + +++P+NSG YVLLSN++A +G W     +RS M++ GV
Sbjct: 756 LLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGV 815

Query: 570 QKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH-DVE 628
           QK+ GYSW++V    H F+  D  HP+   IY  L+ L L++R+ GYV    L LH  + 
Sbjct: 816 QKIPGYSWIDVNGGTHMFSAADGCHPQSVEIYLILKNLLLELRKHGYVPQPYLPLHPQIM 875

Query: 629 EEEKEHMLKYHSEKLAVAFGILTIP 653
             +K + + +   ++      + IP
Sbjct: 876 NFQKMYCIYFKWRRVLCVLCNMKIP 900



 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 158/563 (28%), Positives = 259/563 (46%), Gaps = 49/563 (8%)

Query: 4   GHCDSALRVF------NTMPRRSSVSYNAMISGYLRNARFS-----LARDLFDKMPQRDL 52
           G  D AL  F      N  P + +  Y     G L N         LAR +   M   DL
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHM---DL 212

Query: 53  VSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
              + ++  Y  N  + DA+ LFD +P +D + WN ML+GY +NG  + A   F +M + 
Sbjct: 213 FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNS 272

Query: 113 ----NAISWNGLLAAYVHNGRIEEACRL----FDSKSDWELISWNCLMGGFVKRKMLGAA 164
               N++S+  LL+     G +    +L      S  + +    N ++  + K   L  A
Sbjct: 273 CVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDA 332

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
           RK+FD M   D V+WN +I+GY Q+G   +A  LF            AMV+  V+   + 
Sbjct: 333 RKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFK-----------AMVTSGVKLDSIT 381

Query: 225 EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGD 284
            A +F   + +   + Y   V  Y+  + +     L  A           ++  Y + GD
Sbjct: 382 FA-SFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSA-----------LVDIYFKGGD 429

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           +  A K F      D     A+ISGY   G   EALN+F  + ++G   N  T +  L  
Sbjct: 430 VEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA 489

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           CA +A+L+LGK++H  ++K G E  C VG+++  MY K G +  A   F  +  KD V W
Sbjct: 490 CAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCW 549

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
           N MI  ++++G  + A+ +F  M T G K D +++   LSAC++   +  G E    + +
Sbjct: 550 NLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVR 609

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT-ELG 523
           +  ++ +    T +ID+  + G+L  A+ +   M ++    SW +++ A   HG   E  
Sbjct: 610 NSFISDTFVAST-LIDMYSKCGKLALARSVFDMMDWK-NEVSWNSIIAAYGNHGRPRECL 667

Query: 524 EKAAEMV-FKMEPHNSGMYVLLS 545
           +   EMV   ++P +    V++S
Sbjct: 668 DLFHEMVEAGIQPDHVTFLVIMS 690



 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 156/318 (49%), Gaps = 9/318 (2%)

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQ 235
           M+  Y          NLF +        W  ++ G+   G  D A  FF +M      P 
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 236 KNEISYNAMVAGYVQSNKM-DMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQARKLFD 293
           K    Y     G + +  +  M  EL  +M    ++   +++I  Y  NG I  A+ LFD
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFD 236

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            +P RDC+ W  +++GY + G +  AL  F E++      N  +F C LS CA    +  
Sbjct: 237 ELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRA 296

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G Q+HG V+++G+E+   V N ++ MY KCG++ +A  +F+ + + D V+WN +IAGY +
Sbjct: 297 GIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQ 356

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +GF  +A+ +F++M T GVK D IT    L +   +G +    E  +S    + V     
Sbjct: 357 NGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKE-VHSYIVRHGVPFDVY 415

Query: 474 HYTCMIDLLGRAGRLEEA 491
             + ++D+  + G +E A
Sbjct: 416 LKSALVDIYFKGGDVEMA 433



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           + W  +I G++  G ++ AL  F  +     + ++ TF   +  C  +  + L K +H  
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
               G+    F+G++L+ +Y   G I +A  +F+ +  +D + WN M+ GY ++G    A
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMI 479
           L  F+ M+   VKP+ ++ V +LS C+  G++  G + +   +   +   P+  +   +I
Sbjct: 263 LGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN--TII 320

Query: 480 DLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
            +  + G L +A+ +   MP +    +W  L+     +G T+
Sbjct: 321 TMYSKCGNLFDARKIFDIMP-QTDTVTWNGLIAGYVQNGFTD 361



 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNV 57
           ++G  D A + F  MP + SV +N MI  + +N +  LA DLF +M     + D VS + 
Sbjct: 527 KSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSA 586

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVS----WNAMLSGYAQNGYADEAREVFYQMPHKN 113
            L+       L   + L   + +   +S     + ++  Y++ G    AR VF  M  KN
Sbjct: 587 TLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKN 646

Query: 114 AISWNGLLAAYVHNGRIEEACRLF 137
            +SWN ++AAY ++GR  E   LF
Sbjct: 647 EVSWNSIIAAYGNHGRPRECLDLF 670


>Medtr0013s0120.1 | pentatricopeptide (PPR) repeat protein | HC |
           scaffold0013:48776-47089 | 20130731
          Length = 558

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/527 (39%), Positives = 315/527 (59%), Gaps = 10/527 (1%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMV 245
           G++S A N+F Q  +     + A++ G  Q+    ++ +++  M     + + ++ +  +
Sbjct: 33  GNLSLAGNIFRQIQNPTTNDYNAILRGLAQSSEPTQSISWYRDMLCCVQRVDALTCSFAL 92

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCV 301
            G  ++     A +L   +      +   ++T     Y + G I  ARK+FD M +RD  
Sbjct: 93  KGCARALAFSEATQLHSQVLRFGFDADVLLLTTLLDVYAKTGFIDYARKVFDEMDKRDIA 152

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           SW A+ISG AQ    +EA+ +F  +K +G   N  T   ALS C+ + AL+ G+ +H  V
Sbjct: 153 SWNAMISGLAQGSRPDEAIALFNRMKEEGWRPNDVTVLGALSACSQLGALKEGEIVHRYV 212

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQA 420
           +    +    V NA++ M+ KCG + +A  VFE +   K +++WNTMI  +A +G G +A
Sbjct: 213 LDEKLDRNVIVCNAVIDMFAKCGFVDKAYSVFESMSCRKSLITWNTMIMAFAMNGDGYKA 272

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
           L + + M   G  PD ++ +G L AC+HAGL+D G   F  M K   V  + KHY  M+D
Sbjct: 273 LDLLDRMSLDGTCPDAVSYLGALCACNHAGLVDEGVRLFDLM-KVSGVKLNVKHYGSMVD 331

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LLGRAGRL+EA +++ +MP  P    W +LLGA + +GN E+ E A++ + +M  ++SG 
Sbjct: 332 LLGRAGRLKEAYEIINSMPMFPDVVLWQSLLGACKTYGNVEMAEMASKKLVEMGSNSSGD 391

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRI 600
           +VLLSN+YAA  RW D G +R  M D  V+KV G+S+ EV  +IHKF   D  HP    I
Sbjct: 392 FVLLSNVYAAQQRWKDVGRVREAMVDSDVRKVPGFSYTEVDGRIHKFINYDQSHPNSKEI 451

Query: 601 YAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRV 660
           YA L+E+  +++  GY++ T LVLHD+ +E+KE+ L YHSEKLAVA+G+++   G PI+V
Sbjct: 452 YAKLDEIKFRIKEYGYIAETNLVLHDIGDEDKENALNYHSEKLAVAYGLISTVDGTPIQV 511

Query: 661 IKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           IKNLR+C DCH  IK IS I  R II+RD  RFH F +G+CSC DYW
Sbjct: 512 IKNLRICVDCHAFIKIISNIYNREIIVRDRARFHRFKDGVCSCRDYW 558



 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 131/252 (51%), Gaps = 4/252 (1%)

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
           +G+++ A  +F  +       + AI+ G AQ+    ++++ + ++    + ++  T S A
Sbjct: 32  SGNLSLAGNIFRQIQNPTTNDYNAILRGLAQSSEPTQSISWYRDMLCCVQRVDALTCSFA 91

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L  CA   A     Q+H QV++ G++    +   LL +Y K G I  A  VF+ ++++D+
Sbjct: 92  LKGCARALAFSEATQLHSQVLRFGFDADVLLLTTLLDVYAKTGFIDYARKVFDEMDKRDI 151

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            SWN MI+G A+     +A+ +F  MK  G +P+++T++G LSACS  G +  G E  + 
Sbjct: 152 ASWNAMISGLAQGSRPDEAIALFNRMKEEGWRPNDVTVLGALSACSQLGALKEG-EIVHR 210

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
              D  +  +      +ID+  + G +++A  +  +M       +W  ++ A  ++G+  
Sbjct: 211 YVLDEKLDRNVIVCNAVIDMFAKCGFVDKAYSVFESMSCRKSLITWNTMIMAFAMNGD-- 268

Query: 522 LGEKAAEMVFKM 533
            G KA +++ +M
Sbjct: 269 -GYKALDLLDRM 279



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%), Gaps = 22/255 (8%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISW 117
           Y +   +  AR++FD M ++D+ SWNAM+SG AQ    DEA  +F +M  +    N ++ 
Sbjct: 130 YAKTGFIDYARKVFDEMDKRDIASWNAMISGLAQGSRPDEAIALFNRMKEEGWRPNDVTV 189

Query: 118 NGLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
            G L+A    G ++E       + D K D  +I  N ++  F K   +  A  +F+ M  
Sbjct: 190 LGALSACSQLGALKEGEIVHRYVLDEKLDRNVIVCNAVIDMFAKCGFVDKAYSVFESMSC 249

Query: 174 R-DVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEART 228
           R  +++WNTMI  +A +GD  +A +L D+        D  ++   +      G++DE   
Sbjct: 250 RKSLITWNTMIMAFAMNGDGYKALDLLDRMSLDGTCPDAVSYLGALCACNHAGLVDEGVR 309

Query: 229 FFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPS-RNVSSWNTMITGYGQNG 283
            FD M     + N   Y +MV    ++ ++  A E+  +MP   +V  W +++      G
Sbjct: 310 LFDLMKVSGVKLNVKHYGSMVDLLGRAGRLKEAYEIINSMPMFPDVVLWQSLLGACKTYG 369

Query: 284 DIAQA----RKLFDM 294
           ++  A    +KL +M
Sbjct: 370 NVEMAEMASKKLVEM 384



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 109/231 (47%), Gaps = 18/231 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  D A +VF+ M +R   S+NAMISG  + +R   A  LF++M +      +V + G
Sbjct: 132 KTGFIDYARKVFDEMDKRDIASWNAMISGLAQGSRPDEAIALFNRMKEEGWRPNDVTVLG 191

Query: 62  YVRN-RRLGDA-------RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP-HK 112
            +    +LG         R + D    ++V+  NA++  +A+ G+ D+A  VF  M   K
Sbjct: 192 ALSACSQLGALKEGEIVHRYVLDEKLDRNVIVCNAVIDMFAKCGFVDKAYSVFESMSCRK 251

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKMLGAARKLF 168
           + I+WN ++ A+  NG   +A  L D  S      + +S+   +       ++    +LF
Sbjct: 252 SLITWNTMIMAFAMNGDGYKALDLLDRMSLDGTCPDAVSYLGALCACNHAGLVDEGVRLF 311

Query: 169 DKMHVR----DVVSWNTMISGYAQDGDMSQAKNLFDQSP-HQDVFTWTAMV 214
           D M V     +V  + +M+    + G + +A  + +  P   DV  W +++
Sbjct: 312 DLMKVSGVKLNVKHYGSMVDLLGRAGRLKEAYEIINSMPMFPDVVLWQSLL 362


>Medtr8g066250.1 | PPR containing plant-like protein | HC |
           chr8:27517637-27514893 | 20130731
          Length = 728

 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/623 (34%), Positives = 341/623 (54%), Gaps = 52/623 (8%)

Query: 47  MPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF 106
           +   D V+ N  +T   R +R+  AR+LFD +PQ +  +WNAM  GY QNG+  +   +F
Sbjct: 40  LEHNDFVAPN-FITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLF 98

Query: 107 YQMPH----KNAISWNGLLAAYVHNGRIE-----EACRLFDSKSDWELISW--NCLMGGF 155
            ++       N  ++  ++ +    G++E     E      +K  ++  S+    L+  +
Sbjct: 99  GELNRIAGMPNCFTFPMIIKSC---GKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMY 155

Query: 156 VKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
            K+  +  A K+F +MH R+VV W  +I+GY   GD+   + LFD +P +DV  W+ ++S
Sbjct: 156 SKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLIS 215

Query: 216 GYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
           GY+++  +  AR  FD+MP ++ +S+NAM+ GY  + +++M  ++F+ MP RNV SWN +
Sbjct: 216 GYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGL 275

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           I GY +NG  ++  + F  M          ++ G+                       N 
Sbjct: 276 IGGYVKNGLFSETLESFKRM----------LVEGHVIP--------------------ND 305

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            T    LS C+ + AL++GK +H      GY+   FVGN L+ MY KCG I  A  VF  
Sbjct: 306 FTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNC 365

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           ++ KD++SWNT+I G A HG    AL +F+ MK+ G +PD +T VG+LSAC+H GL+  G
Sbjct: 366 LDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDG 425

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
             YF SM   YS+ P  +HY CM+DLLGRAG L++A + +R MP EP A  W ALLGA R
Sbjct: 426 FLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACR 485

Query: 516 IHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY 575
           ++ N E+ E A + + ++EP+N   +V++SN+Y   GR  D   ++  MRD G +K+ G 
Sbjct: 486 LYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGC 545

Query: 576 SWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV------EE 629
           S +E  + + +F   D  H E + IY  L+ L + +R  GYV +   V H +        
Sbjct: 546 SVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLSDVAHGLGVGLWDPT 605

Query: 630 EEKEHMLKYHSEKLAVAFGILTI 652
                +L+Y+S +  V F +L I
Sbjct: 606 IHSALLLQYNSVR-EVIFPVLAI 627



 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 219/455 (48%), Gaps = 50/455 (10%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDK------MPQRDLVSWNVMLTGY 62
           A ++F+ +P+ ++ ++NAM  GYL+N        LF +      MP        +   G 
Sbjct: 63  ARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGK 122

Query: 63  VRNRRLGDARRLFDSMP--QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           +   R G+      +    + +     +++  Y++ G  ++A +VF +M  +N + W  +
Sbjct: 123 LEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAI 182

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           +  Y+  G +    RLFD   + +++ W+ L+ G+++ K + AAR+LFDKM  RD +SWN
Sbjct: 183 INGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWN 242

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK---- 236
            M++GYA +G++   + +FD+ P ++VF+W  ++ GYV+NG+  E    F +M  +    
Sbjct: 243 AMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVI 302

Query: 237 -NEISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYGQNGDIAQARKL 291
            N+ +  A+++   +   +DM + +     S     N+   N +I  Y + G I  A  +
Sbjct: 303 PNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVV 362

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAAL 351
           F+ + ++D +SW  II+G A  GH  +AL MF  +K +GE  +  TF   LS C      
Sbjct: 363 FNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACT----- 417

Query: 352 ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGY 411
                 H  +VK G+            +YFK  S+ +   +   IE      +  M+   
Sbjct: 418 ------HMGLVKDGF------------LYFK--SMVDHYSIVPQIEH-----YGCMVDLL 452

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
            R G   QAL     M    ++PD +    +L AC
Sbjct: 453 GRAGLLDQALNFIRKMP---IEPDAVIWAALLGAC 484



 Score =  160 bits (405), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 184/399 (46%), Gaps = 36/399 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  + A +VF  M  R+ V + A+I+GY+        R LFD  P+RD+V W+V+++G
Sbjct: 157 KKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISG 216

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y+ ++ +  AR LFD MP +D +SWNAML+GYA NG  +   +VF +MP +N  SWNGL+
Sbjct: 217 YIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLI 276

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL--FDK---MHVR-- 174
             YV NG   E    F       L+  + +   F    +L A  +L   D    +HV   
Sbjct: 277 GGYVKNGLFSETLESFKRM----LVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAE 332

Query: 175 ------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
                 ++   N +I  YA+ G +  A  +F+    +D+ +W  +++G   +G   +A  
Sbjct: 333 SIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALG 392

Query: 229 FFDQMPQKNEISYNAMVAGYVQS-NKMDMARELFEAMPSR--------NVSSWNTMITGY 279
            FD+M  + E        G + +   M + ++ F    S          +  +  M+   
Sbjct: 393 MFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLL 452

Query: 280 GQNGDIAQARKLFDMMP-QRDCVSWAAIISG---YAQTGHYEEALNMFIEIKRDGESLNR 335
           G+ G + QA      MP + D V WAA++     Y      E AL   IE+    E  N 
Sbjct: 453 GRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIEL----EPNNP 508

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYE--TGCFV 372
           + F    +   D+   E   ++   +  TG+    GC V
Sbjct: 509 ANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSV 547



 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 10/228 (4%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
           F   L +C +   L    QI  Q+V  G E   FV    +    +   I  A  +F+ I 
Sbjct: 15  FITLLRSCKNYERLH---QIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIP 71

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           + +  +WN M  GY ++G  +  +++F  +  I   P+  T   ++ +C     +  G E
Sbjct: 72  QPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEE 131

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
                 K +    +S   T +ID+  + G +E+A  +   M  E     W A++    + 
Sbjct: 132 VHCCATK-HGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEM-HERNVVVWTAIINGYILC 189

Query: 518 GNTELGEKAAEMVFKMEPH-NSGMYVLLSNLYAASGRWADAGNMRSRM 564
           G+   G +    +F + P  +  M+ +L + Y  S   A A  +  +M
Sbjct: 190 GDVVSGRR----LFDLAPERDVVMWSVLISGYIESKNMAAARELFDKM 233


>Medtr7g093900.2 | PPR containing plant-like protein | HC |
           chr7:37366165-37359102 | 20130731
          Length = 663

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 319/563 (56%), Gaps = 17/563 (3%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVH 126
           A  +F+ + Q +   WN M+ GY        A   F  M       ++ S+   L A   
Sbjct: 97  AHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQ 156

Query: 127 NGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
              + E     C ++    D EL+  N L+  + +R +L  AR++FD+   +DVV+W TM
Sbjct: 157 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 216

Query: 183 ISGYAQDGDMSQAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN- 237
           I GYA      +A  +F+         +  T  A+VS     G L+  +   +++ +KN 
Sbjct: 217 IDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 276

Query: 238 --EIS-YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
              +S +NA++  YV+ + +  ARELF+ M +++V SW +M+ GY + GD+  AR+ FD 
Sbjct: 277 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 336

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
            P+++ V W+A+I+GY+Q    +E+L +F E+   G      T    LS C  +  L LG
Sbjct: 337 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 396

Query: 355 KQIHGQ-VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
             IH   VV         + NA++ MY KCGSI  A +VF  + E++++SWNTMIAGYA 
Sbjct: 397 DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA 456

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +G  KQA+ VF+ M+ +G +P+ IT V +L+ACSH GLI  G EYF +M + Y + P   
Sbjct: 457 NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERG 516

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY CM+DLLGR G LEEA  L+ NMP +P  A+WGALL A R+HGN EL   +A  + ++
Sbjct: 517 HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL 576

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
           +P +SG+YVLL+N  A   +W+D   +RS M+D GV+K+ GYS +E+     +F V D  
Sbjct: 577 DPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADES 636

Query: 594 HPEKDRIYAFLEELDLKMRREGY 616
           HP+ + IY  LEE+ L  + E Y
Sbjct: 637 HPQSEEIYKVLEEILLLSKLEDY 659



 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 165/355 (46%), Gaps = 53/355 (14%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM- 109
           +L+  N ++  Y     L +AR++FD    KDVV+W  M+ GYA +  ++EA EVF  M 
Sbjct: 178 ELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELML 237

Query: 110 ---PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD----WELISWNCLMGGFVKRKMLG 162
                 N ++   +++A    G +E   R+ +   +      L   N L+  +VK   L 
Sbjct: 238 LSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLV 297

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
            AR+LFD+M  +DV SW +M++GYA+ GD+  A+  FDQ+P ++   W+AM++GY QN  
Sbjct: 298 DARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNK 357

Query: 223 LDEARTFFDQMPQKNEISY----------------------------------------N 242
             E+   F +M ++  +                                          N
Sbjct: 358 PKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLEN 417

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP----QR 298
           A+V  Y +   +D A E+F  MP RN+ SWNTMI GY  NG   QA  +FD M     + 
Sbjct: 418 AIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEP 477

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GESLNRSTFSCALSTCADIAALE 352
           + +++ ++++  +  G   E    F  ++R  G    R  ++C +        LE
Sbjct: 478 NNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLE 532



 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 79/366 (21%)

Query: 7   DSALRVFNTM----PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD----LVSWNVM 58
           + A+ VF  M       + V+  A++S         + + + +K+ +++    L   N +
Sbjct: 227 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 286

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           L  YV+   L DAR LFD M  KDV SW +M++GYA+ G  + AR  F Q P KNA+ W+
Sbjct: 287 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 346

Query: 119 GLLAAYVHNGRIEEACRLFD---------------------------SKSDW-------- 143
            ++A Y  N + +E+ +LF                            +  DW        
Sbjct: 347 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 406

Query: 144 -----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
                 +   N ++  + K   + AA ++F  M  R+++SWNTMI+GYA +G   QA N+
Sbjct: 407 KIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINV 466

Query: 199 FDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKM 254
           FDQ  +     +  T+ ++++     G++ E R +FD M +K  I               
Sbjct: 467 FDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIK-------------- 512

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC-VSWAAIISGYAQT 313
                     P R    +  M+   G+ G + +A KL   MP + C  +W A+++     
Sbjct: 513 ----------PER--GHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMH 560

Query: 314 GHYEEA 319
           G+ E A
Sbjct: 561 GNVELA 566



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 156/345 (45%), Gaps = 13/345 (3%)

Query: 253 KMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
           +M +   +  A P   V ++  +      +GD+  A  +F+ + Q +   W  +I GY  
Sbjct: 66  RMTLTGIITHAFPVSRVIAFCAL----AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQN 121

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
                 A + F+ + +    ++  +F  AL  C     +  G+ ++  V K G++    V
Sbjct: 122 ARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLV 181

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N L+  Y + G +  A  VF+   +KDVV+W TMI GYA H   ++A+ VFE M    V
Sbjct: 182 RNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHV 241

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           +P+E+T++ V+SACS  G ++ G      + +       S H   ++D+  +   L +A+
Sbjct: 242 EPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLH-NALLDMYVKCDCLVDAR 300

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH-NSGMYVLLSNLYAAS 551
           +L   M  +    SW +++      G+ E    +A   F   P  N+  +  +   Y+ +
Sbjct: 301 ELFDRMATK-DVYSWTSMVNGYAKCGDLE----SARRFFDQTPRKNAVCWSAMIAGYSQN 355

Query: 552 GRWADAGNMRSRMRDVGVQKV--TGYSWVEVQNKIHKFTVGDCFH 594
            +  ++  +   M + GV  +  T  S +    ++    +GD  H
Sbjct: 356 NKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIH 400



 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 19/243 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT--- 60
           G  +SA R F+  PR+++V ++AMI+GY +N +   +  LF +M +R +V     L    
Sbjct: 325 GDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVL 384

Query: 61  ---GYVRNRRLGD---ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
              G +    LGD      +   +    V   NA++  YA+ G  D A EVF  MP +N 
Sbjct: 385 SACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNL 444

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVKRKMLGAARKLFDK 170
           ISWN ++A Y  NGR ++A  +FD   +       I++  L+       ++   R+ FD 
Sbjct: 445 ISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDN 504

Query: 171 MHVRDVVS-----WNTMISGYAQDGDMSQAKNLFDQSPHQDV-FTWTAMVSGYVQNGMLD 224
           M  +  +      +  M+    + G + +A  L    P Q     W A+++    +G ++
Sbjct: 505 MERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVE 564

Query: 225 EAR 227
            AR
Sbjct: 565 LAR 567


>Medtr5g049780.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:21773208-21775311 | 20130731
          Length = 662

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/637 (34%), Positives = 323/637 (50%), Gaps = 95/637 (14%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD---------- 200
           L+ G++K  ++  ARKLFD+M  R +V+WN+MIS +   G   +A  L+           
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPD 100

Query: 201 --------------------QSPH----------QDVFTWTAMVSGYVQNGMLDEARTFF 230
                               Q  H           D F  T +V  Y + G + +AR  F
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVF 160

Query: 231 DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN---------------------- 268
           D++  K+ + + A++ GY Q      A E+FE M                          
Sbjct: 161 DRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLV 220

Query: 269 -----------------VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYA 311
                            V+S  +++T Y +   +  + K+F+ +     V+W + I G  
Sbjct: 221 NGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLV 280

Query: 312 QTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCF 371
           Q G  E AL+MF E+ R   S N  T S  L  C+ +A LE G+QIH   VK G +   F
Sbjct: 281 QNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKF 340

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG 431
           V  AL+ +Y KCG++ +A  VF+ + E D+VS NTMI  YA++GFG +AL +FE +K +G
Sbjct: 341 VDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLG 400

Query: 432 VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
           ++P+ +T + +L AC++AGL++ G + F  +  ++S+  +  HYTCMIDLLGRA R EEA
Sbjct: 401 LEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEA 460

Query: 492 QDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAAS 551
             L+      P    W  LL A +IHG  E+ EK  + +    P + G ++LL+N+YA++
Sbjct: 461 TMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASA 519

Query: 552 GRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKM 611
           G+W +   M+S  RD+ ++K    SWV++  ++H F  GD  HP    I   L EL  K+
Sbjct: 520 GKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKV 579

Query: 612 RREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGI-LTIPAGRPIRVIKNLRVCEDC 670
              GY   TK VL D+EEE+K   L YHSEKLA+AF +  T      IR+ KNLRVC   
Sbjct: 580 ITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVC--- 636

Query: 671 HNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
                      G  II RD+ RFHHF  GICSC DYW
Sbjct: 637 -----------GDYIIARDAKRFHHFKGGICSCKDYW 662



 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 196/452 (43%), Gaps = 69/452 (15%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----PQKD 82
           +I GY++ +  + AR LFD+MP R +V+WN M++ +V   +  +A  L+ +M       D
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPD 100

Query: 83  VVSWNAMLSGYAQNGYADEARE-----VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF 137
             +++A+   +++ G + E ++     V       +     G++  Y   G++++A  +F
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVF 160

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--------------------HVRDVV 177
           D   D +++ +  L+ G+ +  + G A ++F+ M                    ++ D+V
Sbjct: 161 DRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLV 220

Query: 178 -------------------SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
                              S  ++++ Y++   +  +  +F+   +    TWT+ + G V
Sbjct: 221 NGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLV 280

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYV----QSNKMDMARELFEAMPSRNVSSWN- 273
           QNG  + A + F +M  +  IS N      +     S  M  A E   A+  +     N 
Sbjct: 281 QNGREEVALSMFREM-MRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNK 339

Query: 274 ----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
                +I  YG+ G++ +AR +FD + + D VS   +I  YAQ G   EAL +F  +K+ 
Sbjct: 340 FVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKL 399

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHG------QVVKTGYETGCFVGNALLGMYFKC 383
           G   N  TF   L  C +   +E G QI         +  T     C +   LLG   + 
Sbjct: 400 GLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMID--LLG---RA 454

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
               EA  + E  +  DV+ W T++     HG
Sbjct: 455 KRFEEATMLIEEGKNPDVIQWRTLLNACKIHG 486



 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 53/270 (19%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR-- 64
           + +++VFN++   S V++ + I G ++N R  +A  +F +M +  +   +  L+  +   
Sbjct: 255 EDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHAC 314

Query: 65  ---------------NRRLG----------------------DARRLFDSMPQKDVVSWN 87
                            +LG                       AR +FDS+ + D+VS N
Sbjct: 315 SSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSIN 374

Query: 88  AMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFD---SK 140
            M+  YAQNG+  EA E+F ++       N +++  +L A  + G +EE C++F    + 
Sbjct: 375 TMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNN 434

Query: 141 SDWELI--SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA--- 195
              EL    + C++    + K    A  L ++    DV+ W T+++     G++  A   
Sbjct: 435 HSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKF 494

Query: 196 -KNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
            K + DQ+P +D  T   + + Y   G  D
Sbjct: 495 MKKMLDQAP-RDGGTHILLTNIYASAGKWD 523



 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 159/397 (40%), Gaps = 79/397 (19%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQR------- 50
           G    A  VF+ +  +  V + A+I GY ++     A ++F+ M      P         
Sbjct: 151 GKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVL 210

Query: 51  -------DLV-------------------SWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
                  DLV                   S   +LT Y +   + D+ ++F+S+     V
Sbjct: 211 VSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHV 270

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL-LAAYVHNGRIEEACRLFDSKSDW 143
           +W + + G  QNG  + A  +F +M  + +IS N   L++ +H      AC         
Sbjct: 271 TWTSFIVGLVQNGREEVALSMFREMM-RCSISPNHFTLSSILH------ACSSLAMLEAG 323

Query: 144 ELISWNCLMGGFVKRKMLGA--------------ARKLFDKMHVRDVVSWNTMISGYAQD 189
           E I    +  G    K + A              AR +FD +   D+VS NTMI  YAQ+
Sbjct: 324 EQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQN 383

Query: 190 GDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS----- 240
           G   +A  LF++        +V T+ +++      G+++E    F  +   + I      
Sbjct: 384 GFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDH 443

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQA----RKLFDMMP 296
           Y  M+    ++ + + A  L E   + +V  W T++     +G++  A    +K+ D  P
Sbjct: 444 YTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAP 503

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
            RD  +   + + YA  G ++      IE+K  G  L
Sbjct: 504 -RDGGTHILLTNIYASAGKWDNV----IEMKSAGRDL 535



 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
           ++  ++ C +  +L   K +H  ++K+G     F G+ L+  Y KC  I EA  +F+ + 
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
            + +V+WN+MI+ +   G  K+A+ ++ +M   GV PD  T   +  A S  G+   G
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREG 120


>Medtr4g088840.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:35446469-35444694 | 20130731
          Length = 591

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 311/528 (58%), Gaps = 10/528 (1%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM---PQK-NEISYNAMV 245
           G ++  + LF      D F + +++    Q+G   +   F+ +M   P K +  ++ ++ 
Sbjct: 64  GSIAYTRRLFLSVTDPDSFLFNSLIKASSQHGFSLDTIFFYRRMLSSPHKPSSYTFTSVF 123

Query: 246 AGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
                 + + +   L    F +    N      ++  Y ++  +  ARK+FD MPQR  V
Sbjct: 124 KACAHLSALKIGTILHSHVFVSGFGSNSFVQAAIVAFYAKSSALCVARKVFDKMPQRSVV 183

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           +W  +ISGY   G   EA+ +F ++   G   + +TF    S C+ I +LELG  ++  +
Sbjct: 184 AWNTMISGYEHNGLANEAMTLFRKMNEMGVCPDSATFVSVSSACSQIGSLELGCWVYDSI 243

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           V  G      +G +L+ M+ +CG +  A  VF+ I E +V++W  MI+GY  HG+G +A+
Sbjct: 244 VSNGIRVNVILGTSLINMFSRCGDVRRARAVFDSISEGNVIAWTAMISGYGMHGYGVEAM 303

Query: 422 MVFESMKT-IGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
            +F  MK   G+ P+ +T V VLSAC+HAGLI  G + F SM ++Y + P  +H+ CM+D
Sbjct: 304 ELFYEMKKERGLVPNTVTFVAVLSACAHAGLIHEGRQVFASMREEYGLVPGLEHHVCMVD 363

Query: 481 LLGRAGRLEEAQDLMRNM-PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSG 539
           +LG+AG L EA   ++ + P E   A W A+LGA ++H N +LG +AA+ +  +EP N  
Sbjct: 364 MLGKAGLLTEAYQFIKELCPVEHVPAVWTAMLGACKMHKNYDLGVEAAQHLISLEPENPS 423

Query: 540 MYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDR 599
            YVLLSN+YA +GR     ++R+ M   G++K  GYS ++V NK + F +GD  HPE + 
Sbjct: 424 NYVLLSNMYALAGRMDRVESVRNVMIQRGIKKQAGYSSIDVNNKTYLFRMGDKAHPETNE 483

Query: 600 IYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIR 659
           IY +L+ L  + +  GY    +  +H++EEEE+E+ L++HSEKLAVAFG++    G  ++
Sbjct: 484 IYQYLDGLIWRCKEAGYAPIPESAMHELEEEEREYALRHHSEKLAVAFGLMKTSHGTALK 543

Query: 660 VIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           ++KNLR+CEDCH+AIK IS +  R II+RD  RFHHF EG CSC DYW
Sbjct: 544 IVKNLRICEDCHSAIKFISVVTNREIIIRDKLRFHHFREGSCSCLDYW 591



 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 135/279 (48%), Gaps = 21/279 (7%)

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM---PHK-NAISWNGLLAAYVHN 127
           RRLF S+   D   +N+++   +Q+G++ +    + +M   PHK ++ ++  +  A  H 
Sbjct: 70  RRLFLSVTDPDSFLFNSLIKASSQHGFSLDTIFFYRRMLSSPHKPSSYTFTSVFKACAHL 129

Query: 128 GRIEEACRL----FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
             ++    L    F S           ++  + K   L  ARK+FDKM  R VV+WNTMI
Sbjct: 130 SALKIGTILHSHVFVSGFGSNSFVQAAIVAFYAKSSALCVARKVFDKMPQRSVVAWNTMI 189

Query: 184 SGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK--- 236
           SGY  +G  ++A  LF    +     D  T+ ++ S   Q G L+     +D +      
Sbjct: 190 SGYEHNGLANEAMTLFRKMNEMGVCPDSATFVSVSSACSQIGSLELGCWVYDSIVSNGIR 249

Query: 237 -NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF-DM 294
            N I   +++  + +   +  AR +F+++   NV +W  MI+GYG +G   +A +LF +M
Sbjct: 250 VNVILGTSLINMFSRCGDVRRARAVFDSISEGNVIAWTAMISGYGMHGYGVEAMELFYEM 309

Query: 295 MPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
             +R    + V++ A++S  A  G   E   +F  ++ +
Sbjct: 310 KKERGLVPNTVTFVAVLSACAHAGLIHEGRQVFASMREE 348



 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 13/188 (6%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISW 117
           Y ++  L  AR++FD MPQ+ VV+WN M+SGY  NG A+EA  +F +M       ++ ++
Sbjct: 161 YAKSSALCVARKVFDKMPQRSVVAWNTMISGYEHNGLANEAMTLFRKMNEMGVCPDSATF 220

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSD----WELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
             + +A    G +E  C ++DS         +I    L+  F +   +  AR +FD +  
Sbjct: 221 VSVSSACSQIGSLELGCWVYDSIVSNGIRVNVILGTSLINMFSRCGDVRRARAVFDSISE 280

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-----DVFTWTAMVSGYVQNGMLDEART 228
            +V++W  MISGY   G   +A  LF +   +     +  T+ A++S     G++ E R 
Sbjct: 281 GNVIAWTAMISGYGMHGYGVEAMELFYEMKKERGLVPNTVTFVAVLSACAHAGLIHEGRQ 340

Query: 229 FFDQMPQK 236
            F  M ++
Sbjct: 341 VFASMREE 348



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 140/317 (44%), Gaps = 61/317 (19%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR------------------ 50
           A +VF+ MP+RS V++N MISGY  N   + A  LF KM +                   
Sbjct: 170 ARKVFDKMPQRSVVAWNTMISGYEHNGLANEAMTLFRKMNEMGVCPDSATFVSVSSACSQ 229

Query: 51  ----DLVSW------------NVMLTGYVRN--RRLGDARR---LFDSMPQKDVVSWNAM 89
               +L  W            NV+L   + N   R GD RR   +FDS+ + +V++W AM
Sbjct: 230 IGSLELGCWVYDSIVSNGIRVNVILGTSLINMFSRCGDVRRARAVFDSISEGNVIAWTAM 289

Query: 90  LSGYAQNGYADEAREVFYQMPHK-----NAISWNGLLAAYVHNGRIEEACRLFDS-KSDW 143
           +SGY  +GY  EA E+FY+M  +     N +++  +L+A  H G I E  ++F S + ++
Sbjct: 290 ISGYGMHGYGVEAMELFYEMKKERGLVPNTVTFVAVLSACAHAGLIHEGRQVFASMREEY 349

Query: 144 ELIS----WNCLMGGFVKRKMLGAARKLFDKM----HVRDVVSWNTMISGYAQ----DGD 191
            L+       C++    K  +L  A +   ++    HV  V  W  M+         D  
Sbjct: 350 GLVPGLEHHVCMVDMLGKAGLLTEAYQFIKELCPVEHVPAV--WTAMLGACKMHKNYDLG 407

Query: 192 MSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS 251
           +  A++L    P ++   +  + + Y   G +D   +  + M Q+  I   A  +    +
Sbjct: 408 VEAAQHLISLEP-ENPSNYVLLSNMYALAGRMDRVESVRNVMIQRG-IKKQAGYSSIDVN 465

Query: 252 NKMDMARELFEAMPSRN 268
           NK  + R   +A P  N
Sbjct: 466 NKTYLFRMGDKAHPETN 482



 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 131/296 (44%), Gaps = 23/296 (7%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ----K 81
           A+++ Y +++   +AR +FDKMPQR +V+WN M++GY  N    +A  LF  M +     
Sbjct: 156 AIVAFYAKSSALCVARKVFDKMPQRSVVAWNTMISGYEHNGLANEAMTLFRKMNEMGVCP 215

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLF 137
           D  ++ ++ S  +Q G  +    V+  +       N I    L+  +   G +  A  +F
Sbjct: 216 DSATFVSVSSACSQIGSLELGCWVYDSIVSNGIRVNVILGTSLINMFSRCGDVRRARAVF 275

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH-----VRDVVSWNTMISGYAQDGDM 192
           DS S+  +I+W  ++ G+        A +LF +M      V + V++  ++S  A  G +
Sbjct: 276 DSISEGNVIAWTAMISGYGMHGYGVEAMELFYEMKKERGLVPNTVTFVAVLSACAHAGLI 335

Query: 193 SQAKNLFDQSPHQ-----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS--YNAMV 245
            + + +F     +      +     MV    + G+L EA  F  ++     +   + AM+
Sbjct: 336 HEGRQVFASMREEYGLVPGLEHHVCMVDMLGKAGLLTEAYQFIKELCPVEHVPAVWTAML 395

Query: 246 AGYVQSNKMDMARELFEAMPS---RNVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
                    D+  E  + + S    N S++  +   Y   G + +   + ++M QR
Sbjct: 396 GACKMHKNYDLGVEAAQHLISLEPENPSNYVLLSNMYALAGRMDRVESVRNVMIQR 451


>Medtr1g012380.1 | PPR containing plant-like protein | HC |
           chr1:2444546-2447496 | 20130731
          Length = 600

 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 305/519 (58%), Gaps = 15/519 (2%)

Query: 202 SPHQDVFTWTAMVSGYVQ------NGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMD 255
           +P  D F +  ++  Y Q      N  L   RT        N+ ++  ++ G      + 
Sbjct: 84  TPSYDAFLFNTLIRAYSQTRDSKSNSFL-FYRTMLRYGVTPNKFTFPFVLKGCAGIGSLR 142

Query: 256 MARELFEAMPS----RNVSSWNTMITGY---GQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           + + +   +       +V   NT+I  Y   G++G    A K+FD  P+ D V+W+A+I+
Sbjct: 143 LGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDG-FEFAEKVFDDSPKMDTVTWSAMIA 201

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
           G+ + G    A+++F E++  G   +  T    LS CAD+ ALELGK +   V K     
Sbjct: 202 GFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPK 261

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
              + NAL+ M+ KCG++ +A  +F  ++ + +VSW ++IAG A HG G  A+ +F+ M 
Sbjct: 262 SVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMV 321

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
             G+ PD++  +GVLSACSH+GL+D+G  YF SM +++S+ P  +HY CM+DLL R G +
Sbjct: 322 ENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFV 381

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLY 548
           +EA + ++ MPFEP    W  ++ A    G  +LGE  ++ + K EP +   YVLLSN+Y
Sbjct: 382 KEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIY 441

Query: 549 AASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELD 608
           A   +W     +R  M   G++KV G + +EV N++++F  GD  H +   IY  ++E+ 
Sbjct: 442 AKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMG 501

Query: 609 LKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCE 668
            ++++ GYV +T  VL D++EE+KE  L  HSEKLA+AF +L  P G  IR++KNLRVCE
Sbjct: 502 REIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCE 561

Query: 669 DCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           DCH+A K ISK+  R I++RD +RFHHF  G+CSC D+W
Sbjct: 562 DCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 164/387 (42%), Gaps = 65/387 (16%)

Query: 79  PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD 138
           P  D   +N ++  Y+Q   +     +FY+   +  ++ N     +V  G     C    
Sbjct: 85  PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKG-----CAGIG 139

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGD--MSQAK 196
           S     L    C+ G  VK    G     F++    DV   NT+I  Y   G+     A+
Sbjct: 140 S-----LRLGKCVHGCVVK---FG-----FEE----DVHVLNTLIHMYCCLGEDGFEFAE 182

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSN 252
            +FD SP  D  TW+AM++G+V+ G    A   F +M       +EI+  ++++      
Sbjct: 183 KVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLG 242

Query: 253 KMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
            +++ + +   +  +N+       N +I  + + G++ +A KLF  M  R  VSW ++I+
Sbjct: 243 ALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIA 302

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
           G A  G   +A+++F E+  +G + +   F   LS C+    ++ G+             
Sbjct: 303 GLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRY------------ 350

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
                      YF  GS+     +   +E      +  M+    R GF K+A   FE ++
Sbjct: 351 -----------YF--GSMERNFSIVPKVEH-----YGCMVDLLCRGGFVKEA---FEFVQ 389

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRG 455
            +  +P++I    +++AC   G +  G
Sbjct: 390 KMPFEPNQIIWRTIITACHATGELKLG 416



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 20/234 (8%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVH 126
           A ++FD  P+ D V+W+AM++G+ + G +  A ++F +M       + I+   +L+A   
Sbjct: 181 AEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACAD 240

Query: 127 NGRIEEACRLFDSKSDWELIS-----WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
            G +E   +  +S  + + I       N L+  F K   +  A KLF +M  R +VSW +
Sbjct: 241 LGALELG-KWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTS 299

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
           +I+G A  G    A +LFD+        D   +  ++S    +G++D+ R +F  M +  
Sbjct: 300 VIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNF 359

Query: 238 EI-----SYNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDI 285
            I      Y  MV    +   +  A E  + MP   N   W T+IT     G++
Sbjct: 360 SIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGEL 413



 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 121/284 (42%), Gaps = 23/284 (8%)

Query: 37  FSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSG 92
           F  A  +FD  P+ D V+W+ M+ G+VR      A  LF  M       D ++  ++LS 
Sbjct: 178 FEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSA 237

Query: 93  YAQNGYADEAREVFYQMPHKNAIS----WNGLLAAYVHNGRIEEACRLFDSKSDWELISW 148
            A  G  +  + V   +  KN        N L+  +   G +++A +LF       ++SW
Sbjct: 238 CADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSW 297

Query: 149 NCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGDMSQAKNLF----- 199
             ++ G         A  LFD+M       D V++  ++S  +  G + + +  F     
Sbjct: 298 TSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMER 357

Query: 200 DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-QKNEISYNAMVAGYVQSNKMDM-- 256
           + S    V  +  MV    + G + EA  F  +MP + N+I +  ++     + ++ +  
Sbjct: 358 NFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGE 417

Query: 257 --ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
             ++EL ++ P    S++  +   Y +     +  K+ +MM  R
Sbjct: 418 SISKELIKSEPMHE-SNYVLLSNIYAKLRQWEKKTKVREMMDMR 460


>Medtr4g087150.1 | PPR containing plant-like protein | HC |
           chr4:34147385-34144072 | 20130731
          Length = 724

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/657 (32%), Positives = 349/657 (53%), Gaps = 51/657 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNV 57
           + G    A  +F+ MP R+  S+N MISGY +  +++ A  L   M     + + VS++ 
Sbjct: 49  KTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMHSSCVKFNEVSFSA 108

Query: 58  MLTGYVRNRRLGDARR----LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
            L+   R   L   ++    LF S  Q+     +A+L  Y Q     EA  VF ++  +N
Sbjct: 109 CLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIREAEMVFEELRDEN 168

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRK--------MLGAAR 165
            + W+ +LA YV    I +A  +F+     ++++W  L+ G+ KR+        + G  R
Sbjct: 169 HVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMR 228

Query: 166 ----------------------------KLFDKMHVRDVVSWNTMISG-----YAQDGDM 192
                                       K+   + ++D   ++  +S      Y     +
Sbjct: 229 RSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSSALAEFYCVSDAV 288

Query: 193 SQAKNLFDQSPHQDVFTWT-AMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS 251
             AK +++    +       +++ G V  G + EA   F  +  K  IS N M+ GY  S
Sbjct: 289 DDAKRVYESMVGEACSNVADSLIGGLVSMGRVKEAGMIFYGLRDKTLISNNLMIKGYAMS 348

Query: 252 NKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGY 310
            +   +++LFE M  ++++S NTMIT Y +NG++ +A KLFD    +R+CV+W +++SGY
Sbjct: 349 GQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVKLFDKTKGERNCVTWNSMMSGY 408

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
              G + EAL +++ ++R     +RSTFS     CA + + + G+ +H  + KT Y+   
Sbjct: 409 IHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLCSFQQGQLLHAHLAKTPYQENV 468

Query: 371 FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
           +VG AL+  Y KCG + +A   F  I   +V +W  +I GYA HG G +A+  F SM   
Sbjct: 469 YVGTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALINGYAYHGCGSEAISRFRSMLDQ 528

Query: 431 GVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           GV P+  T V VLSACSHAGL+D G ++F+SM  +Y +TP+ +HYTC++DLLGR+GR++E
Sbjct: 529 GVVPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCVVDLLGRSGRVKE 588

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAA 550
           A++ +  MP +     WGALL AS    N ELGE+AA  +F ++P++    V LSN+YA 
Sbjct: 589 AEEFIIQMPIKADGVIWGALLNASCFWNNVELGERAAVKLFSLDPNSVSALVTLSNMYAR 648

Query: 551 SGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEEL 607
            GRW     +R R++ + ++K  G+SW+E+ N +H F+V D  HP  D IY  +E +
Sbjct: 649 RGRWGKKTKIRKRLQSLELRKDQGFSWIELNNNVHLFSVEDTTHPYSDVIYKTVEHI 705



 Score =  123 bits (309), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 185/415 (44%), Gaps = 57/415 (13%)

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
           PH   IS N  +A +   G++ EA  +FD      + SWN ++ G+ +      A  L  
Sbjct: 35  PH--VISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVS 92

Query: 170 KMHVRDV----VSWNTMISGYAQDGDM---SQAKNLFDQSPHQDV-FTWTAMVSGYVQNG 221
            MH   V    VS++  +S   + G +    Q  +L  +S +Q      +A++  YVQ  
Sbjct: 93  FMHSSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCC 152

Query: 222 MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ 281
            + EA   F+++  +N + ++ M+AGYVQ + +  A E+FE MP R+V +W T+I+GY +
Sbjct: 153 GIREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAK 212

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL-NRSTFSC 340
             D               C                E AL++F  ++R  E L N  T  C
Sbjct: 213 RED--------------GC----------------ERALDLFGCMRRSSEVLPNEFTLDC 242

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG-IEEK 399
            L  CA +  L +GK +HG  +K G++    V +AL   Y    ++ +A  V+E  + E 
Sbjct: 243 VLRVCARLRILYVGKVVHGLCIKDGFDFDNSVSSALAEFYCVSDAVDDAKRVYESMVGEA 302

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
                +++I G    G  K+A M+F  ++   +  + + + G     + +G   +  + F
Sbjct: 303 CSNVADSLIGGLVSMGRVKEAGMIFYGLRDKTLISNNLMIKGY----AMSGQFKKSKKLF 358

Query: 460 YSMNKDYSVTPSSKHYT---CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
             M        S KH T    MI +  + G L+EA  L      E    +W +++
Sbjct: 359 EKM--------SLKHLTSLNTMITVYSKNGELDEAVKLFDKTKGERNCVTWNSMM 405



 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 139/294 (47%), Gaps = 42/294 (14%)

Query: 239 ISYNAMVAGYVQSNKMDMARELFEA---MPSRNVSSWNTMITGYGQNGDIAQARKLFDMM 295
           + ++ +   + +  K+     L EA    P   +S+ N  I  + + G + +AR +FD M
Sbjct: 5   LKFSPVSTTWKRKQKLQFFTTLLEASQPYPPHVIST-NISIAHHAKTGKLVEARHMFDEM 63

Query: 296 PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
           P R   SW  +ISGY+Q G Y EAL +   +       N  +FS  LS C    +L LGK
Sbjct: 64  PLRTVSSWNTMISGYSQWGKYTEALTLVSFMHSSCVKFNEVSFSACLSACTRGGSLFLGK 123

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGS------------------------------ 385
           QIH  + K+GY+    VG+ALL  Y +C                                
Sbjct: 124 QIHSLLFKSGYQRFGPVGSALLHYYVQCCGIREAEMVFEELRDENHVLWSLMLAGYVQRD 183

Query: 386 -IGEANDVFEGIEEKDVVSWNTMIAGYARHGFG-KQALMVFESM-KTIGVKPDEITMVGV 442
            IG+A ++FE +  +DVV+W T+I+GYA+   G ++AL +F  M ++  V P+E T+  V
Sbjct: 184 MIGDAMEIFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCV 243

Query: 443 LSACS-----HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
           L  C+     + G +  G       + D SV+ +   + C+ D +  A R+ E+
Sbjct: 244 LRVCARLRILYVGKVVHGLCIKDGFDFDNSVSSALAEFYCVSDAVDDAKRVYES 297


>Medtr7g093900.1 | PPR containing plant-like protein | HC |
           chr7:37365900-37360699 | 20130731
          Length = 854

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 324/572 (56%), Gaps = 19/572 (3%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVH 126
           A  +F+ + Q +   WN M+ GY        A   F  M       ++ S+   L A   
Sbjct: 47  AHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQ 106

Query: 127 NGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
              + E     C ++    D EL+  N L+  + +R +L  AR++FD+   +DVV+W TM
Sbjct: 107 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 166

Query: 183 ISGYAQDGDMSQAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN- 237
           I GYA      +A  +F+         +  T  A+VS     G L+  +   +++ +KN 
Sbjct: 167 IDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 226

Query: 238 --EIS-YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
              +S +NA++  YV+ + +  ARELF+ M +++V SW +M+ GY + GD+  AR+ FD 
Sbjct: 227 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 286

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
            P+++ V W+A+I+GY+Q    +E+L +F E+   G      T    LS C  +  L LG
Sbjct: 287 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 346

Query: 355 KQIHGQ-VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
             IH   VV         + NA++ MY KCGSI  A +VF  + E++++SWNTMIAGYA 
Sbjct: 347 DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA 406

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +G  KQA+ VF+ M+ +G +P+ IT V +L+ACSH GLI  G EYF +M + Y + P   
Sbjct: 407 NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERG 466

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY CM+DLLGR G LEEA  L+ NMP +P  A+WGALL A R+HGN EL   +A  + ++
Sbjct: 467 HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL 526

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
           +P +SG+YVLL+N  A   +W+D   +RS M+D GV+K+ GYS +E+     +F V D  
Sbjct: 527 DPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADES 586

Query: 594 HPEKDRIYAFLEELDLKMRREGYVS-STKLVL 624
           HP+ + IY  LE  +L  ++  +VS   KL++
Sbjct: 587 HPQSEEIYK-LECDNLSSKKLTWVSGGCKLII 617



 Score =  157 bits (396), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 165/355 (46%), Gaps = 53/355 (14%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM- 109
           +L+  N ++  Y     L +AR++FD    KDVV+W  M+ GYA +  ++EA EVF  M 
Sbjct: 128 ELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELML 187

Query: 110 ---PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD----WELISWNCLMGGFVKRKMLG 162
                 N ++   +++A    G +E   R+ +   +      L   N L+  +VK   L 
Sbjct: 188 LSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLV 247

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
            AR+LFD+M  +DV SW +M++GYA+ GD+  A+  FDQ+P ++   W+AM++GY QN  
Sbjct: 248 DARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNK 307

Query: 223 LDEARTFFDQMPQKNEISY----------------------------------------N 242
             E+   F +M ++  +                                          N
Sbjct: 308 PKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLEN 367

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP----QR 298
           A+V  Y +   +D A E+F  MP RN+ SWNTMI GY  NG   QA  +FD M     + 
Sbjct: 368 AIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEP 427

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GESLNRSTFSCALSTCADIAALE 352
           + +++ ++++  +  G   E    F  ++R  G    R  ++C +        LE
Sbjct: 428 NNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLE 482



 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 79/366 (21%)

Query: 7   DSALRVFNTM----PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD----LVSWNVM 58
           + A+ VF  M       + V+  A++S         + + + +K+ +++    L   N +
Sbjct: 177 EEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNAL 236

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           L  YV+   L DAR LFD M  KDV SW +M++GYA+ G  + AR  F Q P KNA+ W+
Sbjct: 237 LDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWS 296

Query: 119 GLLAAYVHNGRIEEACRLFD---------------------------SKSDW-------- 143
            ++A Y  N + +E+ +LF                            +  DW        
Sbjct: 297 AMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVG 356

Query: 144 -----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
                 +   N ++  + K   + AA ++F  M  R+++SWNTMI+GYA +G   QA N+
Sbjct: 357 KIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINV 416

Query: 199 FDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKM 254
           FDQ  +     +  T+ ++++     G++ E R +FD M +K  I               
Sbjct: 417 FDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIK-------------- 462

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC-VSWAAIISGYAQT 313
                     P R    +  M+   G+ G + +A KL   MP + C  +W A+++     
Sbjct: 463 ----------PER--GHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMH 510

Query: 314 GHYEEA 319
           G+ E A
Sbjct: 511 GNVELA 516



 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 156/345 (45%), Gaps = 13/345 (3%)

Query: 253 KMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
           +M +   +  A P   V ++  +      +GD+  A  +F+ + Q +   W  +I GY  
Sbjct: 16  RMTLTGIITHAFPVSRVIAFCAL----AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQN 71

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
                 A + F+ + +    ++  +F  AL  C     +  G+ ++  V K G++    V
Sbjct: 72  ARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLV 131

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            N L+  Y + G +  A  VF+   +KDVV+W TMI GYA H   ++A+ VFE M    V
Sbjct: 132 RNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHV 191

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           +P+E+T++ V+SACS  G ++ G      + +       S H   ++D+  +   L +A+
Sbjct: 192 EPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLH-NALLDMYVKCDCLVDAR 250

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH-NSGMYVLLSNLYAAS 551
           +L   M  +    SW +++      G+ E    +A   F   P  N+  +  +   Y+ +
Sbjct: 251 ELFDRMATK-DVYSWTSMVNGYAKCGDLE----SARRFFDQTPRKNAVCWSAMIAGYSQN 305

Query: 552 GRWADAGNMRSRMRDVGVQKV--TGYSWVEVQNKIHKFTVGDCFH 594
            +  ++  +   M + GV  +  T  S +    ++    +GD  H
Sbjct: 306 NKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIH 350



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 19/245 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT- 60
           + G  +SA R F+  PR+++V ++AMI+GY +N +   +  LF +M +R +V     L  
Sbjct: 273 KCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVS 332

Query: 61  -----GYVRNRRLGD---ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
                G +    LGD      +   +    V   NA++  YA+ G  D A EVF  MP +
Sbjct: 333 VLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPER 392

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVKRKMLGAARKLF 168
           N ISWN ++A Y  NGR ++A  +FD   +       I++  L+       ++   R+ F
Sbjct: 393 NLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYF 452

Query: 169 DKMHVRDVVS-----WNTMISGYAQDGDMSQAKNLFDQSPHQDV-FTWTAMVSGYVQNGM 222
           D M  +  +      +  M+    + G + +A  L    P Q     W A+++    +G 
Sbjct: 453 DNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGN 512

Query: 223 LDEAR 227
           ++ AR
Sbjct: 513 VELAR 517


>Medtr5g071190.1 | PPR containing plant-like protein | HC |
           chr5:30193271-30196237 | 20130731
          Length = 887

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/768 (31%), Positives = 389/768 (50%), Gaps = 85/768 (11%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVSWNVMLTGY 62
           A +VFN M  R+  +++AMI G  RN  +     LF  M      P   L+   +   G 
Sbjct: 136 ARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVLPDEFLLPKVLQACGK 195

Query: 63  VRNRRLGDARRLFDSMPQKDVVSW-----NAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
            R+   G   RL  SM  +  + W     N++++ YA+ G  D A+++F  M  +++++W
Sbjct: 196 CRDLETG---RLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAW 252

Query: 118 NGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKMLGAARKLFDKMH- 172
           N +++ +  NG I +A + FD+      +  L++WN L+  + +      A  L  KM  
Sbjct: 253 NAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEW 312

Query: 173 ---VRDVVSWNTMISGYAQDGDMSQAKNLFDQ---------------------------- 201
                DV +W +MISG+ Q G +S A +L  +                            
Sbjct: 313 FGIAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSM 372

Query: 202 -----------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQ 250
                      +   +V    +++  Y + G L  A+  FD M +++  S+N+++ GY Q
Sbjct: 373 GLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQ 432

Query: 251 SNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLF-----DMMPQRDCV 301
           +     A ELF  M       N+ +WN MITGY Q+G   QA  LF     D   +R+  
Sbjct: 433 AGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAA 492

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           SW ++ISG+ Q+G  ++AL +F  ++      N  T    L  CA++ A +  K+IH   
Sbjct: 493 SWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFA 552

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           V+    +   V N L+  Y K G++  + ++F  +  KD VSWN+M++ Y  HG  + AL
Sbjct: 553 VRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESAL 612

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDL 481
            +F  M+  G++P+  T   +L A  HAG++D G   F  + KDY V    +HY+ M+ L
Sbjct: 613 DLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYL 672

Query: 482 LGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMY 541
           LGR+G+L EA D +++MP EP ++ WGALL A RIH N  +   A + + + EP N+   
Sbjct: 673 LGRSGKLAEALDFIQSMPIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITR 732

Query: 542 VLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIY 601
            LLS  Y+  G++   G       +  V K  G SW+E  N +H F VGD  +P  D+++
Sbjct: 733 HLLSQAYSLCGKFEPEG-------EKAVNKPIGQSWIERNNVVHTFVVGDQSNPYLDKLH 785

Query: 602 AFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRP--IR 659
           ++L+ + + ++   +VS  +L + + E+E    +   HSEKLA AF ++  P  +P  +R
Sbjct: 786 SWLKRVAVNVKT--HVSDNELYIEEEEKENTSSV---HSEKLAFAFALID-PHNKPQILR 839

Query: 660 VIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           ++K LR+C DCH+  K+IS   G  I L DS+  HHF  G CSC DYW
Sbjct: 840 IVKKLRMCRDCHDTAKYISMAYGCEIYLSDSNCLHHFKGGHCSCRDYW 887



 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 223/491 (45%), Gaps = 75/491 (15%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD-----LVSWN 56
           + G  D A ++F+ M  R SV++NAMISG+ +N     A+  FD M Q+D     LV+WN
Sbjct: 230 KCGEMDCAKKIFDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAM-QKDGVEPSLVTWN 288

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQ-------KDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           ++++ Y    +LG      D M +        DV +W +M+SG+ Q G    A ++  +M
Sbjct: 289 ILISCY---NQLGHCDLAIDLMRKMEWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEM 345

Query: 110 ------------------------------PHK---------NAISWNGLLAAYVHNGRI 130
                                          H          N +  N L+  Y   G +
Sbjct: 346 FLAGVEANNITIASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDL 405

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD----VVSWNTMISGY 186
           + A  +FD  S+ ++ SWN ++GG+ +    G A +LF KM   D    +++WN MI+GY
Sbjct: 406 KAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGY 465

Query: 187 AQDGDMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQ 235
            Q G   QA +LF     D    ++  +W +++SG+VQ+G  D+A   F  M      P 
Sbjct: 466 MQSGAEDQALDLFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPN 525

Query: 236 KNEI-SYNAMVAGYVQSNKM-DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFD 293
              I S   + A  V S K+ ++       +    +S  N +I  Y ++G++  ++ +F+
Sbjct: 526 SVTILSILPVCANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFN 585

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            +  +D VSW +++S Y   G  E AL++F ++++ G   NR TF+  L        ++ 
Sbjct: 586 ELSWKDAVSWNSMLSSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDE 645

Query: 354 GKQIHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGY 411
           GK +   + K      G    +A++ +  + G + EA D  + +  E +   W  ++   
Sbjct: 646 GKSVFSCITKDYLVRQGMEHYSAMVYLLGRSGKLAEALDFIQSMPIEPNSSVWGALLTAC 705

Query: 412 ARH-GFGKQAL 421
             H  FG   L
Sbjct: 706 RIHRNFGVAVL 716



 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 145/286 (50%), Gaps = 8/286 (2%)

Query: 220 NGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMP-SRNVSSW-- 272
           NG L EA T  D + ++      I+Y  ++   +  + + + +EL   +    NV+ +  
Sbjct: 61  NGSLSEAVTILDSLAEQGCRVKPITYMNLLQSCIDKDCIFIGKELHSRIGLVENVNPFVE 120

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
             +++ Y + G +  ARK+F+ M  R+  +W+A+I G ++   + E + +F  + RDG  
Sbjct: 121 TKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRDGVL 180

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            +       L  C     LE G+ IH  V++ G      + N+++ +Y KCG +  A  +
Sbjct: 181 PDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKI 240

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F+ ++E+D V+WN MI+G+ ++G   QA   F++M+  GV+P  +T   ++S  +  G  
Sbjct: 241 FDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHC 300

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           D   +    M + + + P    +T MI    + GR+  A DL++ M
Sbjct: 301 DLAIDLMRKM-EWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEM 345



 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 168/417 (40%), Gaps = 87/417 (20%)

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM--- 264
           F  T +VS Y + G+L  AR  F++M  +N  +++AM+ G  ++        LF AM   
Sbjct: 118 FVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRD 177

Query: 265 -----------------PSRNVSS--------------W-----NTMITGYGQNGDIAQA 288
                              R++ +              W     N+++  Y + G++  A
Sbjct: 178 GVLPDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCA 237

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           +K+FD M +RD V+W A+ISG+ Q G   +A   F  +++D                   
Sbjct: 238 KKIFDCMDERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKD------------------- 278

Query: 349 AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE----EKDVVSW 404
                           G E      N L+  Y + G    A D+   +E      DV +W
Sbjct: 279 ----------------GVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPDVYTW 322

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
            +MI+G+ + G    AL + + M   GV+ + IT+    SAC+    +  G E  +S+  
Sbjct: 323 TSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGLE-IHSIAV 381

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE 524
             ++  +      +ID+  + G L+ AQ +  +M  E    SW +++G    +       
Sbjct: 382 KMNLVDNVLVGNSLIDMYCKCGDLKAAQHIF-DMMSERDVYSWNSIIGG---YFQAGFCG 437

Query: 525 KAAEMVFKMEPHNSGMYVLLSNL----YAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
           KA E+  KM+  +S   ++  N+    Y  SG    A ++   +   G  K    SW
Sbjct: 438 KAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASW 494


>Medtr3g098280.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:44861451-44859606 | 20130731
          Length = 554

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/444 (42%), Positives = 269/444 (60%), Gaps = 4/444 (0%)

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           N+   N +I  YG  G +  A KLFD M +RD VSW+ +IS   +     EAL++F +++
Sbjct: 111 NIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQ 170

Query: 328 ---RDGES-LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
              RD  + L+R+     +S  + +  +ELG  +H  +V+ G      +G AL+ MY +C
Sbjct: 171 MGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRC 230

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVL 443
           G I  +  VF+ + E++VV+W  +I G A HG  ++AL VF  MK  G+KPD    +GVL
Sbjct: 231 GLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVL 290

Query: 444 SACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
            ACSH GL++ G   F SM  ++ + P  +HY CM+DLLGRAG + EA D +  MP +P 
Sbjct: 291 VACSHGGLVEDGWRVFESMRDEFGIKPMLEHYGCMVDLLGRAGLILEAFDFVEEMPLKPN 350

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSR 563
           +  W  LLGA   H +  L EKA E + +++P++ G YVLLSN Y   G W     +R+ 
Sbjct: 351 SVIWRTLLGACVNHNHLGLAEKARERIIELDPYHDGDYVLLSNAYGRVGNWGGKAGLRNS 410

Query: 564 MRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
           M+   + K  G S+V +   +H+F  GD  HP+ + I  FL  +   ++  GY  +T  V
Sbjct: 411 MKQNRIVKEPGLSFVHIDQVVHEFVSGDHVHPQWEEITKFLASIIDTVKLGGYTPNTSSV 470

Query: 624 LHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGR 683
           LHD+++EEKEH L YHSEKLAVAF +L     R IRVIKNLR+C DCH+ +KH S I  R
Sbjct: 471 LHDIQDEEKEHCLGYHSEKLAVAFVLLYHRDRRTIRVIKNLRICYDCHDFMKHASGIFDR 530

Query: 684 LIILRDSHRFHHFNEGICSCGDYW 707
            II+RD +RFHHF++G+CSC D+W
Sbjct: 531 DIIIRDRNRFHHFSKGLCSCQDFW 554



 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 20/251 (7%)

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
           A  L  +    D  S+  II   + TG    A+++F  + R+    +  TF   L     
Sbjct: 41  ATVLLRLPTPPDPFSYNTIIKHVSPTG----AISLFSHMHRNSVPFDHFTFPLILKHHHH 96

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
                        + K G++T  FV NAL+  Y   GS+  A  +F+ +  +D+VSW+T+
Sbjct: 97  HLLHS-------LIFKLGFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTL 149

Query: 408 IAGYARHGFGKQALMVFESM----KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN 463
           I+   ++    +AL VF+ M    + I    D   M+ V+SA S  G+I+ G  + +S  
Sbjct: 150 ISCLVKNNLPAEALSVFQQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGI-WVHSFI 208

Query: 464 KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
               +  +    T +I++  R G ++ +  +   MP E    +W AL+    +HG +   
Sbjct: 209 VRMGIVMTVPLGTALINMYSRCGLIDRSVKVFDEMP-ERNVVTWTALINGLAVHGRS--- 264

Query: 524 EKAAEMVFKME 534
            +A ++ ++M+
Sbjct: 265 REALKVFYEMK 275



 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 147/354 (41%), Gaps = 62/354 (17%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL--AAYVHNGRIEEACRLFDS 139
           D  S+N ++   +  G    A  +F  M H+N++ ++         H+        +F  
Sbjct: 52  DPFSYNTIIKHVSPTG----AISLFSHM-HRNSVPFDHFTFPLILKHHHHHLLHSLIFKL 106

Query: 140 KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF 199
             D  +   N L+  +  R  L  A KLFD+M  RD+VSW+T+IS   ++   ++A ++F
Sbjct: 107 GFDTNIFVQNALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVF 166

Query: 200 DQSP--HQDVFTW------TAMVSGYVQNGMLDE---ARTFFDQMPQKNEISY-NAMVAG 247
            Q    H+D+  W       +++S     G+++      +F  +M     +    A++  
Sbjct: 167 QQMQMGHRDIRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINM 226

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAII 307
           Y +   +D + ++F+ MP RNV +W  +I                               
Sbjct: 227 YSRCGLIDRSVKVFDEMPERNVVTWTALI------------------------------- 255

Query: 308 SGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV-----V 362
           +G A  G   EAL +F E+K  G   + + F   L  C+    +E G ++   +     +
Sbjct: 256 NGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACSHGGLVEDGWRVFESMRDEFGI 315

Query: 363 KTGYE-TGCFVGNALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARH 414
           K   E  GC V   LLG   + G I EA D  E +  K + V W T++     H
Sbjct: 316 KPMLEHYGCMVD--LLG---RAGLILEAFDFVEEMPLKPNSVIWRTLLGACVNH 364



 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 127/333 (38%), Gaps = 87/333 (26%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP--QKD 82
           NA+I+ Y       +A  LFD+M +RD+VSW+ +++  V+N    +A  +F  M    +D
Sbjct: 116 NALINAYGSRGSLDVAVKLFDEMRRRDIVSWSTLISCLVKNNLPAEALSVFQQMQMGHRD 175

Query: 83  VVSW-----------------------------------------NAMLSGYAQNGYADE 101
           + +W                                          A+++ Y++ G  D 
Sbjct: 176 IRNWLDRAIMLSVISAVSSLGVIELGIWVHSFIVRMGIVMTVPLGTALINMYSRCGLIDR 235

Query: 102 AREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS------KSDWEL---ISWNCLM 152
           + +VF +MP +N ++W  L+     +GR  EA ++F        K D  L   +   C  
Sbjct: 236 SVKVFDEMPERNVVTWTALINGLAVHGRSREALKVFYEMKESGLKPDGALFIGVLVACSH 295

Query: 153 GGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTA 212
           GG V+        ++F+ M  RD      M+  Y                          
Sbjct: 296 GGLVE-----DGWRVFESM--RDEFGIKPMLEHYG------------------------C 324

Query: 213 MVSGYVQNGMLDEARTFFDQMPQK-NEISYNAMVAGYVQSNKMDM---ARELFEAMPSRN 268
           MV    + G++ EA  F ++MP K N + +  ++   V  N + +   ARE    +   +
Sbjct: 325 MVDLLGRAGLILEAFDFVEEMPLKPNSVIWRTLLGACVNHNHLGLAEKARERIIELDPYH 384

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
              +  +   YG+ G+      L + M Q   V
Sbjct: 385 DGDYVLLSNAYGRVGNWGGKAGLRNSMKQNRIV 417


>Medtr5g067140.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:28350546-28353833 | 20130731
          Length = 770

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/653 (32%), Positives = 351/653 (53%), Gaps = 42/653 (6%)

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISW 148
           +++ YA+ G  + A++VF  M  +NA++W  L+  YV N   + A  LF+      L+  
Sbjct: 119 LVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEM----LLHS 174

Query: 149 NCLMGGFVKRKMLGAAR-----KLFDKMHVR--------DVVSWNTMISGYAQ-DGDMSQ 194
            C    +     L A       KL +++H          D    N + S Y +  G +  
Sbjct: 175 ECYPSNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEV 234

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNG-MLDEARTFFDQM-----PQKNEISYNAMVAGY 248
               F +   +DV +WTA +S   + G  +   R F + +      Q NE +  + ++  
Sbjct: 235 GLTAFRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQC 294

Query: 249 VQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSW 303
            +   +++  ++  A+ ++     N+   N+++  Y + G I +A++LF  M   + V+W
Sbjct: 295 CEVKCLELGIQV-HALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTW 353

Query: 304 AAIISGYAQTGHYE-----------EALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
            A+I+G+AQ                EALN+F ++ R G   +  TFS  LS C+ + ALE
Sbjct: 354 NAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTFSSVLSVCSKMMALE 413

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G+QIH + +KTG+ +   VG++++ MY KCGSI  A+ VF  +  + ++ W TMI G+A
Sbjct: 414 QGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWTTMITGFA 473

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           +HG+ KQAL +FE MK +G++P+ +T VGVLSAC  AG+++    YF  M K+Y + P  
Sbjct: 474 QHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKPVM 533

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            HY C++D+L R G+++EA DL++ M ++     W  L+      GN ELG  AAE +  
Sbjct: 534 DHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQGNLELGCDAAEKLLS 593

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           ++P ++  Y LL N Y ++GR+ D   + + MR+  + ++  +SW+ ++++++ F   D 
Sbjct: 594 LKPKDTETYKLLLNAYVSAGRYDDVSRVENIMREEKIGELKDWSWISIKDRVYSFQTNDK 653

Query: 593 FHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTI 652
              E   I   LE+L +K +  GY     +   D E+E+      YHSEKLA+ FG+  +
Sbjct: 654 ADIESS-IGKSLEDLHIKAKNLGYEMLEYVEKSDKEKEKTSSPTIYHSEKLAITFGLENL 712

Query: 653 PAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGD 705
           P   P+RV+KN  +C D HN +K+IS +  R II++DS R H F  G CSCG+
Sbjct: 713 PNSSPVRVVKNTLMCRDSHNFVKYISTLTSREIIVKDSKRLHKFVNGQCSCGN 765



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 208/513 (40%), Gaps = 101/513 (19%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM-------P 79
           +++ Y +  R   A+ +FD M +R+ V+W  ++ GYV+N     A  LF+ M       P
Sbjct: 119 LVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYP 178

Query: 80  QK---------------------------------DVVSWNAMLSGYAQNGYADEA-REV 105
                                              D    NA+ S Y + G   E     
Sbjct: 179 SNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLTA 238

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLF---------DSKSDWELISW-------- 148
           F ++  K+ ISW   ++A    G   +  R+F            +++ L S         
Sbjct: 239 FRRIKEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSALSQCCEVK 298

Query: 149 ------------------------NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMIS 184
                                   N L+  ++K   +  A++LF  M+  ++V+WN MI+
Sbjct: 299 CLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIA 358

Query: 185 GYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM 244
           G+AQ  ++S+  NL   S +Q       + S   ++GM  +  TF       + +S  + 
Sbjct: 359 GHAQMMELSK-DNL---SAYQKGIEALNLFSKLNRSGMKPDPFTF------SSVLSVCSK 408

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWA 304
           +    Q  ++  AR +     S +V   ++MI  Y + G I +A K+F  M  R  + W 
Sbjct: 409 MMALEQGEQIH-ARTIKTGFLS-DVVVGSSMINMYNKCGSIERASKVFLEMSIRTMILWT 466

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT 364
            +I+G+AQ G  ++ALN+F ++K  G   N  TF   LS C     +      + ++++ 
Sbjct: 467 TMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFN-YFEIMQK 525

Query: 365 GYETGCFVGN--ALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARHGFGKQAL 421
            Y+    + +   L+ M  + G + EA D+ + ++ K     W+ +I G      G   L
Sbjct: 526 EYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQ--GNLEL 583

Query: 422 MVFESMKTIGVKP-DEITMVGVLSACSHAGLID 453
               + K + +KP D  T   +L+A   AG  D
Sbjct: 584 GCDAAEKLLSLKPKDTETYKLLLNAYVSAGRYD 616



 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 8/235 (3%)

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
           ++EA ++    K   E ++ S +   L  C +  +    + IH  +VKTG     F+ + 
Sbjct: 62  FQEAFSL---AKESNEEVDSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSF 118

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKP 434
           L+ +Y KCG +  A  VF+ +  ++ V+W  ++ GY ++   K A+ +FE M       P
Sbjct: 119 LVTVYAKCGRMECAQQVFDHMNRRNAVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYP 178

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA-GRLEEAQD 493
              T+   L+AC+    +  G E  ++    Y V   +     +  L  +  G+LE    
Sbjct: 179 SNYTLAIALNACTSLHSLKLG-EQLHAYIIKYHVDFDTSIGNALCSLYTKCGGKLEVGLT 237

Query: 494 LMRNMPFEPPAASWGALLGASRIHGNTELGEKA-AEMVFKMEPHNSGMYVLLSNL 547
             R +  E    SW A + A    G    G +   EM+          Y L S L
Sbjct: 238 AFRRIK-EKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNEYTLTSAL 291



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 134/328 (40%), Gaps = 65/328 (19%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLG-----------DARR 73
           N+++  YL+      A+ LF  M   +LV+WN M+ G+ +   L            +A  
Sbjct: 323 NSLLYLYLKCGCIVEAQRLFKGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALN 382

Query: 74  LFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYV 125
           LF  +     + D  +++++LS  ++    ++  ++  +        + +  + ++  Y 
Sbjct: 383 LFSKLNRSGMKPDPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYN 442

Query: 126 HNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISG 185
             G IE A ++F   S   +I W  ++ GF                              
Sbjct: 443 KCGSIERASKVFLEMSIRTMILWTTMITGF------------------------------ 472

Query: 186 YAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS- 240
            AQ G   QA NLF+         ++ T+  ++S     GM++EA  +F+ M ++ +I  
Sbjct: 473 -AQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFNYFEIMQKEYKIKP 531

Query: 241 ----YNAMVAGYVQSNKMDMARELFEAMPSRNVS-SWNTMITGYGQNGDIA----QARKL 291
               Y  +V   V+  ++  A +L + M  +     W+ +I G    G++      A KL
Sbjct: 532 VMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIVGCLSQGNLELGCDAAEKL 591

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEA 319
             + P +D  ++  +++ Y   G Y++ 
Sbjct: 592 LSLKP-KDTETYKLLLNAYVSAGRYDDV 618


>Medtr6g012850.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:3995998-3993764 | 20130731
          Length = 637

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 317/582 (54%), Gaps = 59/582 (10%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSP--HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ-- 235
           N ++  Y      S A+ LFD+ P  H+D   +TA++    ++    E+   F QM Q  
Sbjct: 61  NALLHLYGSCSLPSHARKLFDEIPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFD 116

Query: 236 ---------------------------------------KNEISYNAMVAGYVQSNKMDM 256
                                                  K +   NA++  YV+   +  
Sbjct: 117 LPLDGVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGE 176

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           AR++FE +  R+V SW+  + G  +   +   R LFD MP+R+ V+W  +I GY   G  
Sbjct: 177 ARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFT 236

Query: 317 EEALNMFIEIKRD-GESLNRSTFSCALSTCADIAALELGKQIHGQVVK-TGYETGCFVGN 374
           +EA  +  E+    G  L+  T    LS C+    + +G+ +H   VK  G + G  VG 
Sbjct: 237 KEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGT 296

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
           +L+ MY KCG I  A  VF  + +++VV+WN M+ G A HG GK A+ +F SM    VKP
Sbjct: 297 SLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVE-EVKP 355

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
           D +T + +LSACSH+GL+++G +YF+ +   Y + P  +HY CM+ LLGRAGRLEEA+ +
Sbjct: 356 DGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIM 415

Query: 495 MRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRW 554
           ++NM   P     G+L+G+   HG  +LGEK    + +M+P N+  +++LSN+YA SG+ 
Sbjct: 416 VKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKV 475

Query: 555 ADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRRE 614
             A ++R  ++  G++KV G S + V  K+H+F  GD  H     IY  L+E+  ++R  
Sbjct: 476 EKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSA 535

Query: 615 GYVSSTKLVL-------HDVEE--EEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLR 665
           GYV +T   +        D  E  EE E +L  HSEKLA+ FG+++ P+G P+ + KNLR
Sbjct: 536 GYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLR 595

Query: 666 VCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +C+DCH+AIK  SK+  R I++RD +RFH F  G CSC DYW
Sbjct: 596 ICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 215/491 (43%), Gaps = 91/491 (18%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKD 82
           NA++  Y   +  S AR LFD++PQ  +D V +    T  +R+    ++ +LF  M Q D
Sbjct: 61  NALLHLYGSCSLPSHARKLFDEIPQSHKDSVDY----TALIRHCPPFESLKLFIQMRQFD 116

Query: 83  V----VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD 138
           +    V     L+  A+ G  D                    + + +H G ++     FD
Sbjct: 117 LPLDGVVMVCALNACARLGGGDTK------------------VGSQMHVGVVKFGFVKFD 158

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
                     N LM  +VK  ++G ARK+F+ + VR VVSW+  + G  +   +   + L
Sbjct: 159 KVC-------NALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVL 211

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-----QKNEISYNAMVAGYVQSNK 253
           FD+ P ++   WT M+ GYV NG   EA     +M      + + ++  ++++   QS  
Sbjct: 212 FDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGD 271

Query: 254 MDMAR-----ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           + + R      + E      V    +++  Y + G I  A  +F  M +R+ V+W A++ 
Sbjct: 272 VCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLG 331

Query: 309 GYAQTGHYEEALNMFI----EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT 364
           G A  G  + A++MF     E+K DG      TF   LS C+           H  +V+ 
Sbjct: 332 GLAMHGMGKIAVDMFPSMVEEVKPDG-----VTFMALLSACS-----------HSGLVEK 375

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVF 424
           G++            YF      +   V+    + ++  +  M+    R G  ++A ++ 
Sbjct: 376 GWD------------YFH-----DLEPVYR--IKPEIEHYACMVGLLGRAGRLEEAEIMV 416

Query: 425 ESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP-SSKHYTCMIDLLG 483
           ++M+   + P+E+ +  ++ +C   G +  G +    M     + P +++++  + ++  
Sbjct: 417 KNMR---IPPNEVVLGSLIGSCYAHGRLQLGEKI---MRDLLEMDPLNTEYHIVLSNMYA 470

Query: 484 RAGRLEEAQDL 494
            +G++E+A  L
Sbjct: 471 LSGKVEKANSL 481



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 156/331 (47%), Gaps = 28/331 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA+++ Y++      AR +F+ +  R +VSW+  L G V+   +   R LFD MP+++ V
Sbjct: 162 NALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEV 221

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMP-----HKNAISWNGLLAAY-----VHNGRIEEAC 134
           +W  M+ GY  NG+  EA  +  +M        + ++   +L+A      V  GR     
Sbjct: 222 AWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCY 281

Query: 135 RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
            + +   D+ ++    L+  + K   + AA  +F  M  R+VV+WN M+ G A  G    
Sbjct: 282 AVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKI 341

Query: 195 AKNLFD---QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAG 247
           A ++F    +    D  T+ A++S    +G++++   +F  +      K EI + A + G
Sbjct: 342 AVDMFPSMVEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVG 401

Query: 248 YV-QSNKMDMARELFEAM--PSRNVSSWNTMITGYG----QNGDIAQARKLFDMMPQRDC 300
            + ++ +++ A  + + M  P   V   + + + Y     Q G+    R L +M P    
Sbjct: 402 LLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGE-KIMRDLLEMDPLN-- 458

Query: 301 VSWAAIISG-YAQTGHYEEALNMFIEIKRDG 330
             +  ++S  YA +G  E+A ++   +K+ G
Sbjct: 459 TEYHIVLSNMYALSGKVEKANSLRQVLKKRG 489



 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 138/321 (42%), Gaps = 24/321 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G    A ++F  +  RS VS++  + G ++       R LFD+MP+R+ V+W VM+ 
Sbjct: 169 VKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIV 228

Query: 61  GYVRNRRLGDARRLFDSMP-----QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI 115
           GYV N    +A  L   M      +   V+  ++LS  +Q+G     R V      +  +
Sbjct: 229 GYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGL 288

Query: 116 SW-----NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
            +       L+  Y   GRI  A  +F S     +++WN ++GG     M   A  +F  
Sbjct: 289 DFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPS 348

Query: 171 M--HVR-DVVSWNTMISGYAQDGDMSQAKNLF-DQSP----HQDVFTWTAMVSGYVQNGM 222
           M   V+ D V++  ++S  +  G + +  + F D  P      ++  +  MV    + G 
Sbjct: 349 MVEEVKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGR 408

Query: 223 LDEARTFFDQMP-QKNEISYNAMVAGYVQSNKMDMA----RELFEAMPSRNVSSWNTMIT 277
           L+EA      M    NE+   +++       ++ +     R+L E  P  N      +  
Sbjct: 409 LEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDP-LNTEYHIVLSN 467

Query: 278 GYGQNGDIAQARKLFDMMPQR 298
            Y  +G + +A  L  ++ +R
Sbjct: 468 MYALSGKVEKANSLRQVLKKR 488



 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 8/117 (6%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGC--FVGNALLGMYFKCGSIGEANDVFEG 395
           F   L  C+   AL  G+Q+H   + TG  +    F+ NALL +Y  C     A  +F+ 
Sbjct: 23  FRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHARKLFDE 82

Query: 396 IEE--KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
           I +  KD V +  +I    RH    ++L +F  M+   +  D + MV  L+AC+  G
Sbjct: 83  IPQSHKDSVDYTALI----RHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACARLG 135


>Medtr2g021710.1 | PPR containing plant-like protein | HC |
           chr2:7399056-7396074 | 20130731
          Length = 727

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 314/603 (52%), Gaps = 53/603 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++I+ Y +      A+ LFD     D VS N+M++GYVRN ++ +AR+LFD MP K  V
Sbjct: 92  NSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCV 151

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLFDS- 139
           S+  M+ G+ QNG+  EA EVF  M       N ++   +++A  H G +   CR+    
Sbjct: 152 SYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLN-CRMVHGL 210

Query: 140 -----KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
                     ++S N LM  +     +  AR+LFD+M  R++V+WN M++GYA+ G + +
Sbjct: 211 VVKMFVVGLVIVSTN-LMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLVDE 269

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEI----------- 239
           A+ LFD    +DV +W  M+ GY+Q G L EA   +  M Q     NE+           
Sbjct: 270 ARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSACGR 329

Query: 240 --------------------SYN----AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
                                YN     ++  Y     MD+A   FE     ++ SWN +
Sbjct: 330 GTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNAL 389

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
             G+ +NG +  A K FD M  RD  SW+ +ISGYAQ+ H + AL +F ++   G   N 
Sbjct: 390 TAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNE 449

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            T     S  A +  L+ GK  H  +          +  AL+ MY KCGSI  A   F  
Sbjct: 450 VTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQFFNQ 509

Query: 396 I--EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
           I  E   V  WN +I G A HG     L VF  M+   +KP+ IT +GVLSAC HAGL++
Sbjct: 510 IRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVE 569

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            G   F +M   Y+V P  KHY CMID+LGRAG LEEA++++R+MP E     WG LL A
Sbjct: 570 SGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAA 629

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            R HGN  +GE+AAE + ++ P + G  VLLSN+YA +G+W +   +RS M+   + +  
Sbjct: 630 CRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQTMDREP 689

Query: 574 GYS 576
           GYS
Sbjct: 690 GYS 692



 Score =  175 bits (444), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 226/513 (44%), Gaps = 106/513 (20%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           +RNG  D+A ++F+ MP +  VSY  MI G+++N  F  A ++F  M    +V  ++ L 
Sbjct: 130 VRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLV 189

Query: 61  ---------GYVRNRRL------------------------------GDARRLFDSMPQK 81
                    G V N R+                               +ARRLFD MP++
Sbjct: 190 NVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPER 249

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           ++V+WN ML+GYA+ G  DEARE+F  +  K+ ISW  ++  Y+  GR+ EA  ++ +  
Sbjct: 250 NLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAML 309

Query: 142 DWELISWNCLMGGFVKRKMLGAAR----KLFDKMHVRDVVSWN----TMISGYAQDGDMS 193
                    ++   V     G A     +L   +  R    +N    T+I  YA  G M 
Sbjct: 310 QTGHGPNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMD 369

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNK 253
            A   F+      + +W A+ +G+++NGM+D A   FD+M  ++  S++ M++GY QS  
Sbjct: 370 LACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEH 429

Query: 254 MDMARELFEAMPS--------------RNVSSWNTMITG--------------------- 278
             MA ELF  M +                +++  T+  G                     
Sbjct: 430 PKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRAA 489

Query: 279 ----YGQNGDIAQARKLFDMMPQRDCVS----WAAIISGYAQTGHYEEALNMFIEIKRDG 330
               Y + G I  A + F+ +  RD VS    W AII G A  GH    L +F +++R  
Sbjct: 490 LIDMYAKCGSINSALQFFNQI--RDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFH 547

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET-------GCFVGNALLGMYFKC 383
              N  TF   LS C     +E GK+I  + +K+ Y         GC +   +LG   + 
Sbjct: 548 IKPNPITFIGVLSACCHAGLVESGKRIF-KTMKSAYNVEPDIKHYGCMID--ILG---RA 601

Query: 384 GSIGEANDVFEGIE-EKDVVSWNTMIAGYARHG 415
           G + EA ++   +  E D+V W T++A    HG
Sbjct: 602 GLLEEAEEMIRSMPMEADIVIWGTLLAACRTHG 634



 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 206/489 (42%), Gaps = 103/489 (21%)

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           +F    H N    N L+  Y   G I+ A  LFD  +  + +S N ++ G+V+   +  A
Sbjct: 79  IFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNA 138

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQ------------- 205
           RKLFD M  +  VS+ TMI G+ Q+G   +A  +F         P+              
Sbjct: 139 RKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHL 198

Query: 206 --------------------DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMV 245
                                V   T ++  Y     + EAR  FD+MP++N +++N M+
Sbjct: 199 GEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVML 258

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
            GY ++  +D ARELF+ +  ++V SW TMI GY Q G + +A +++  M          
Sbjct: 259 NGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAM---------- 308

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
                 QTGH    + M + +               +S C    A+  G Q+HG VVK G
Sbjct: 309 -----LQTGHGPNEV-MIVNL---------------VSACGRGTAIVDGWQLHGTVVKRG 347

Query: 366 YETGCFVG-------------------------------NALLGMYFKCGSIGEANDVFE 394
           ++   F+                                NAL   + K G +  A   F+
Sbjct: 348 FDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFD 407

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
            +  +DV SW+TMI+GYA+    K AL +F  M   G+KP+E+TMV V SA +  G +  
Sbjct: 408 KMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQE 467

Query: 455 GTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS-WGALLGA 513
           G      M  + S+  +      +ID+  + G +  A      +  E  + S W A++  
Sbjct: 468 GKLAHEYMRSE-SIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICG 526

Query: 514 SRIHGNTEL 522
              HG+  +
Sbjct: 527 LASHGHASM 535



 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 31/141 (21%)

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           AL +C+ ++ +  G+QIH  + K G     F+ N+L+ MY KCG I  A  +F+G    D
Sbjct: 59  ALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLD 118

Query: 401 VVSWNTMIAGYAR-------------------------------HGFGKQALMVFESMKT 429
            VS N M++GY R                               +GF ++AL VF+ M++
Sbjct: 119 SVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRS 178

Query: 430 IGVKPDEITMVGVLSACSHAG 450
            GV P+++T+V V+SACSH G
Sbjct: 179 CGVVPNDLTLVNVISACSHLG 199


>Medtr3g117150.1 | organelle transcript processing protein, putative
           | HC | chr3:54810037-54807667 | 20130731
          Length = 571

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/567 (35%), Positives = 307/567 (54%), Gaps = 50/567 (8%)

Query: 191 DMSQAKNL---FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG 247
           +MSQA  L   F +S +Q  F+     +    +G L+ AR   +  P  N   YN ++  
Sbjct: 5   NMSQALQLHAQFIKSQNQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRA 64

Query: 248 YVQSNK-----MDMARELFEAMPSRNVSS------------------------------- 271
           Y  ++        ++  +F   P  NV                                 
Sbjct: 65  YSHTSNPTHHFQALSLFIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINK 124

Query: 272 ---------WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
                     N +I  Y + G++  AR++FD M  RD VSW ++I+G+       EA+ +
Sbjct: 125 MGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQL 184

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F  +   G  +N +T    L  CAD  AL +G+++HG V + G +    V  AL+ MY K
Sbjct: 185 FQRMLEVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSK 244

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
           CG +  A +VF+ + ++DV  W  MI G A HG  K+A+ +F  M+T  VKPDE T++ V
Sbjct: 245 CGCLESAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVV 304

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEP 502
           LSA  +AGL+  G  +F  + K YS+ P+ KH+ CM+DLL + G LEEA+D +  MP +P
Sbjct: 305 LSAYRNAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKP 364

Query: 503 PAASWGALLGASRIHGNTELGEKAAEM--VFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
            A  W  L+ A ++H +TE  E+  +   +  M  H+SG Y+L SN+YA++G+W D   +
Sbjct: 365 DAVIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEV 424

Query: 561 RSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 620
           R  M   G+ K  G S +EV   +H+F +GD  HP+ ++I+  L+++  K+R+EGY    
Sbjct: 425 RELMNKKGLVKPPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKV 484

Query: 621 KLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKI 680
             V+ ++++EEK   L +HSEKLA+A+G++    G  IR++KNLR CEDCH  +K ISK+
Sbjct: 485 SEVMLEMDDEEKAIQLLHHSEKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKV 544

Query: 681 VGRLIILRDSHRFHHFNEGICSCGDYW 707
             R II+RD  RFHHF  G CSC DYW
Sbjct: 545 YQRDIIVRDRIRFHHFKNGDCSCKDYW 571



 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 163/385 (42%), Gaps = 47/385 (12%)

Query: 68  LGDARRLFDSMPQKDVVSWNAMLSGYAQNG-----YADEAREVFYQMPHKNAISWNGLLA 122
           L  AR L ++ P  +   +N ++  Y+        +   +  +F   PH N    +    
Sbjct: 40  LNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPD---- 95

Query: 123 AYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
            + ++  ++   RL  ++   +L        GF+ +   G            D+   N +
Sbjct: 96  TFTYSFALKSCGRLKLTQQAKQL-------HGFINKMGFGF-----------DLYIQNAL 137

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNE 238
           I  Y++ G++  A+ +FD+  H+DV +WT+M++G+V + +  EA   F +M +     NE
Sbjct: 138 IHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNE 197

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNV----SSWNTMITGYGQNGDIAQARKLFDM 294
            +  +++ G   S  + + R++   +  + +    +    +I  Y + G +  AR++FD 
Sbjct: 198 ATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDD 257

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
           +  RD   W A+I G A  G  +EA+ +F+E++      +  T    LS   +   +  G
Sbjct: 258 VLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREG 317

Query: 355 KQIHGQVVK------TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTM 407
                 V K           GC V      +  K G + EA D    +  K D V W T+
Sbjct: 318 YMFFNDVQKRYSMKPNIKHFGCMV-----DLLAKGGCLEEAEDFINAMPMKPDAVIWRTL 372

Query: 408 IAGYARHGFGKQALMVFESMKTIGV 432
           I     H   ++A  + + ++  G+
Sbjct: 373 IWACKVHADTERAERLMKHLELQGM 397



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 151/366 (41%), Gaps = 32/366 (8%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNAR----------FSLARDLFDKMPQRDL 52
           +G  + A  + NT P  +S  YN +I  Y   +           F         +P+ D 
Sbjct: 37  SGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSLFIFMLQPHTNVPKPDT 96

Query: 53  VSWNVMLTGYVRNRRLGDARRLFDSMPQK----DVVSWNAMLSGYAQNGYADEAREVFYQ 108
            +++  L    R +    A++L   + +     D+   NA++  Y++ G    AR+VF +
Sbjct: 97  FTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEIGELVIARQVFDR 156

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLF----DSKSDWELISWNCLMGGFVKRKMLGAA 164
           M H++ +SW  ++A +V++    EA +LF    +   D    +   ++ G      L   
Sbjct: 157 MSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGCADSGALSVG 216

Query: 165 RKLFDKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           RK+   +  + +         +I  Y++ G +  A+ +FD    +DVF WTAM+ G   +
Sbjct: 217 RKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWTAMIYGLACH 276

Query: 221 GMLDEARTFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSS 271
           GM  EA   F +M   N    E +   +++ Y  +  +      F  +  R     N+  
Sbjct: 277 GMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVREGYMFFNDVQKRYSMKPNIKH 336

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  M+    + G + +A    + MP + D V W  +I         E A  +   ++  G
Sbjct: 337 FGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERAERLMKHLELQG 396

Query: 331 ESLNRS 336
            S + S
Sbjct: 397 MSAHDS 402



 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 23/287 (8%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           DL   N ++  Y     L  AR++FD M  +DVVSW +M++G+  +    EA ++F +M 
Sbjct: 130 DLYIQNALIHMYSEIGELVIARQVFDRMSHRDVVSWTSMIAGFVNHHLTVEAIQLFQRML 189

Query: 111 H----KNAISWNGLLAAYVHNGRIEEACRLF----DSKSDWELISWNCLMGGFVKRKMLG 162
                 N  +   +L     +G +    ++     +   D++      L+  + K   L 
Sbjct: 190 EVGVDVNEATVISVLRGCADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLE 249

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYV 218
           +AR++FD +  RDV  W  MI G A  G   +A  LF +    +   D  T   ++S Y 
Sbjct: 250 SAREVFDDVLDRDVFVWTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYR 309

Query: 219 QNGMLDEARTFFDQMPQK-----NEISYNAMVAGYVQSNKMDMARELFEAMPSR-NVSSW 272
             G++ E   FF+ + ++     N   +  MV    +   ++ A +   AMP + +   W
Sbjct: 310 NAGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIW 369

Query: 273 NTMITGYGQNGDIAQARKLFDM-----MPQRDCVSWAAIISGYAQTG 314
            T+I     + D  +A +L        M   D  S+    + YA TG
Sbjct: 370 RTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTG 416


>Medtr7g078420.1 | PPR containing plant-like protein | HC |
           chr7:29654282-29650656 | 20130731
          Length = 646

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/511 (39%), Positives = 292/511 (57%), Gaps = 23/511 (4%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL- 145
           N +L  YA+ G  + AR++F +MP +    WN +++ Y   G  EEA  LF    D E+ 
Sbjct: 138 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 197

Query: 146 ---ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ- 201
              I+W  ++ G  K+  L  AR  FDKM  R VVSWN M+SGYAQ G   +   LF+  
Sbjct: 198 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 257

Query: 202 -SP---HQDVFTWTAMVSGYVQNG--MLDEA--RTFFDQMP-QKNEISYNAMVAGYVQSN 252
            SP     D  TW  ++S     G   L E+  R   D +  + N     A++  + +  
Sbjct: 258 LSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCG 317

Query: 253 KMDMARELFEAM---PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
            ++ A ++FE +     R+   WN MI+ Y + GD+  AR LFD MPQRD VSW ++I+G
Sbjct: 318 NLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAG 377

Query: 310 YAQTGHYEEALNMFIE-IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
           Y Q G   +A+ +F E I  +    +  T     S C  +  L LG      + +   + 
Sbjct: 378 YTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQI 437

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
              V N+L+ MY +CGS+ +A  +F+ +  +D+VS+NT+I+G+A HG G +++ +   MK
Sbjct: 438 SISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMK 497

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
             G++PD IT + +L+ACSHAGL+  G   F S+       P   HY CMID+LGRAGRL
Sbjct: 498 EDGIEPDRITYIAILTACSHAGLLGEGQRLFESIK-----FPDVDHYACMIDMLGRAGRL 552

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLY 548
           EEA  L+++MP EP A  +G+LL A+ IH   ELGE AA  +FK+EPHNSG YVLLSN+Y
Sbjct: 553 EEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIY 612

Query: 549 AASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           A++GRW D   +R  MR  GV+K TG SW+E
Sbjct: 613 ASAGRWKDGDKVRDTMRKQGVKKTTGLSWLE 643



 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/525 (27%), Positives = 248/525 (47%), Gaps = 71/525 (13%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLF----DKMPQRDLVSWNV 57
           + G  + A ++F+ MP R+   +N MISGY +      A  LF    D+   R++++W  
Sbjct: 146 KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTT 205

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-----PHK 112
           M+TG+ +   L  AR  FD MP++ VVSWNAMLSGYAQ G  +E   +F  M        
Sbjct: 206 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQP 265

Query: 113 NAISWNGLLAAYVHNGRI---EEACRLFDSKSDWE--LISWNCLMGGFVKRKMLGAARKL 167
           +  +W  ++++    G     E   R  D    +         L+    K   L AA K+
Sbjct: 266 DETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKI 325

Query: 168 FDKMHV---RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
           F+++ V   R  V WN MIS YA+ GD+  A++LFD+ P +D  +W +M++GY QNG   
Sbjct: 326 FEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESV 385

Query: 225 EARTFFDQM-----PQKNEISYNAMVAGYVQSNKMDMAR----ELFEAMPSRNVSSWNTM 275
           +A   F++M      + +E++  ++ +      ++ +       L E     ++S +N++
Sbjct: 386 KAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQISISVYNSL 445

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           I+ Y + G +  A  +F  M  RD VS+  +ISG+A+ GH  E++ + +++K DG   +R
Sbjct: 446 ISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDR 505

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            T+   L+ C+                                     G +GE   +FE 
Sbjct: 506 ITYIAILTACS-----------------------------------HAGLLGEGQRLFES 530

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           I+  DV  +  MI    R G  ++A+ + +SM    ++P       +L+A S    ++ G
Sbjct: 531 IKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP---MEPHAGIYGSLLNATSIHKQVELG 587

Query: 456 TEYFYSMNKDYSVTP-SSKHYTCMIDLLGRAGRL---EEAQDLMR 496
                +  K + V P +S +Y  + ++   AGR    ++ +D MR
Sbjct: 588 E---LAAAKLFKVEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMR 629



 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 188/374 (50%), Gaps = 21/374 (5%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF--- 230
           RD    N ++  YA+ G +  A+ LFD+ P + V  W  M+SGY + G  +EA T F   
Sbjct: 132 RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 191

Query: 231 -DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQAR 289
            DQ   +N I++  M+ G+ +   +  AR  F+ MP R+V SWN M++GY Q G   +  
Sbjct: 192 GDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETI 251

Query: 290 KLF-DMMP----QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD---GESLNRSTFSCA 341
           +LF DM+     Q D  +W  +IS  +  G  +  L+  I  K D   G   N    +  
Sbjct: 252 RLFNDMLSPGNVQPDETTWVTVISSCSSLG--DPCLSESIVRKLDDTVGFRPNYFVKTAL 309

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L   A    LE   +I  Q+    Y +     NA++  Y + G +  A  +F+ + ++D 
Sbjct: 310 LDMHAKCGNLEAAHKIFEQLGVYKYRSSV-PWNAMISAYARVGDLPSARHLFDKMPQRDT 368

Query: 402 VSWNTMIAGYARHGFGKQALMVFESM-KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY 460
           VSWN+MIAGY ++G   +A+ +FE M  +   KPDE+TMV V SAC H G +  G  +  
Sbjct: 369 VSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGN-WAV 427

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT 520
           S+ K+  +  S   Y  +I +  R G +++A  + + M       S+  L+     HG+ 
Sbjct: 428 SILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATR-DLVSYNTLISGFAEHGH- 485

Query: 521 ELGEKAAEMVFKME 534
             G ++ E++ KM+
Sbjct: 486 --GMESIELLLKMK 497



 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 160/328 (48%), Gaps = 24/328 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKM---PQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
            A++  + +      A  +F+++     R  V WN M++ Y R   L  AR LFD MPQ+
Sbjct: 307 TALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQR 366

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQM-----PHKNAISWNGLLAAYVHNGRIE----E 132
           D VSWN+M++GY QNG + +A ++F +M        + ++   + +A  H G +      
Sbjct: 367 DTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWA 426

Query: 133 ACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
              L ++     +  +N L+  + +   +  A  +F +M  RD+VS+NT+ISG+A+ G  
Sbjct: 427 VSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHG 486

Query: 193 SQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGY 248
            ++  L     +     D  T+ A+++     G+L E +  F+ +   +   Y  M+   
Sbjct: 487 MESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFPDVDHYACMIDML 546

Query: 249 VQSNKMDMARELFEAMP-SRNVSSWNTMITGYG-----QNGDIAQARKLFDMMPQRDCVS 302
            ++ +++ A +L ++MP   +   + +++         + G++A A KLF + P  +  +
Sbjct: 547 GRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAA-KLFKVEPH-NSGN 604

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  + + YA  G +++   +   +++ G
Sbjct: 605 YVLLSNIYASAGRWKDGDKVRDTMRKQG 632



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 14/195 (7%)

Query: 334 NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           N S +S  + +    + L L       V+K+GY+   +V N +LG+Y K G I  A  +F
Sbjct: 103 NTSFYSVMMKSAGSESMLFLA-----HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLF 157

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
           + + ++ V  WN MI+GY + G  ++A  +F  M    +  + IT   +++  +  G + 
Sbjct: 158 DEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLK 217

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM----PFEPPAASWGA 509
               YF  M +   V+     +  M+    + G  EE   L  +M      +P   +W  
Sbjct: 218 TARMYFDKMPERSVVS-----WNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVT 272

Query: 510 LLGASRIHGNTELGE 524
           ++ +    G+  L E
Sbjct: 273 VISSCSSLGDPCLSE 287


>Medtr7g106930.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:43569310-43567382 | 20130731
          Length = 526

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/442 (41%), Positives = 273/442 (61%), Gaps = 30/442 (6%)

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           A+ +F+ M   +V+SW  MI GY + GD+  ARKLFD MP ++ V+W+ +I+GY +   +
Sbjct: 37  AKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMINGYLRNNCF 96

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           ++A+ +F  +  +G   N      A+S CA + AL  G++ +   ++   +    +G A+
Sbjct: 97  DKAVEIFEILIDEGLVANEVG---AVSACAHLGALAAGEKAYEHAIRINLDLNVILGTAI 153

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           + MY +CG++ +A  VFE ++EKDV+SW ++I+G A HG+ ++AL  F  M   G+ P +
Sbjct: 154 VDMYARCGNVEKAVRVFEEMKEKDVISWTSLISGVAMHGYAEEALEYFYVMVKNGIVPRD 213

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
           IT   VL A SH GL+++G E F SM +DY + P  +HY CM+DLLGRAG+LEEA++ + 
Sbjct: 214 ITFTAVLKAYSHGGLVEKGQEIFESMKRDYRLEPRLEHYGCMVDLLGRAGKLEEAENFIL 273

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD 556
            MP +P A                            M+P +SG Y LLSN+YA + +W D
Sbjct: 274 EMPIKPNAP---------------------------MKPEHSGYYALLSNIYARTNKWKD 306

Query: 557 AGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
           A  MR  M++ GV+K  GYS +E+  K H+FT+G+  HPE D+I    E++  K++  GY
Sbjct: 307 ATVMRRLMKEKGVRKQPGYSLIEIDGKTHEFTIGNKRHPEIDKIERMWEKILQKIKLAGY 366

Query: 617 VSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKH 676
           + +T   L D++EEEKE  L  HSEKLA+A+GI+ I A   IR++KNLRVCEDCH A K 
Sbjct: 367 MGNTSEALFDIDEEEKEDALHRHSEKLAIAYGIMKIQAPGTIRIVKNLRVCEDCHTATKF 426

Query: 677 ISKIVGRLIILRDSHRFHHFNE 698
           ISK+    +I+RD +RFHHF +
Sbjct: 427 ISKVFDVELIVRDRNRFHHFKK 448



 Score =  103 bits (256), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 110/211 (52%), Gaps = 23/211 (10%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           L AA+ +F  M   DV SW  MI GY + GD+  A+ LFD+ P +++ TW+ M++GY++N
Sbjct: 34  LMAAKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMINGYLRN 93

Query: 221 GMLDEARTFFDQMPQK----NEIS-------YNAMVAG---YVQSNKMDMARELFEAMPS 266
              D+A   F+ +  +    NE+          A+ AG   Y  + ++++          
Sbjct: 94  NCFDKAVEIFEILIDEGLVANEVGAVSACAHLGALAAGEKAYEHAIRINL---------D 144

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
            NV     ++  Y + G++ +A ++F+ M ++D +SW ++ISG A  G+ EEAL  F  +
Sbjct: 145 LNVILGTAIVDMYARCGNVEKAVRVFEEMKEKDVISWTSLISGVAMHGYAEEALEYFYVM 204

Query: 327 KRDGESLNRSTFSCALSTCADIAALELGKQI 357
            ++G      TF+  L   +    +E G++I
Sbjct: 205 VKNGIVPRDITFTAVLKAYSHGGLVEKGQEI 235



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 125/257 (48%), Gaps = 20/257 (7%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYA 99
           A+ +F  M + D+ SW  M+ GY +   +  AR+LFD MP K++V+W+ M++GY +N   
Sbjct: 37  AKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMINGYLRNNCF 96

Query: 100 DEAREVFYQMPHKNAISWN-GLLAAYVHNGRI-------EEACRLFDSKSDWELISWNCL 151
           D+A E+F  +  +  ++   G ++A  H G +       E A R+     D  +I    +
Sbjct: 97  DKAVEIFEILIDEGLVANEVGAVSACAHLGALAAGEKAYEHAIRI---NLDLNVILGTAI 153

Query: 152 MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV---- 207
           +  + +   +  A ++F++M  +DV+SW ++ISG A  G   +A   F       +    
Sbjct: 154 VDMYARCGNVEKAVRVFEEMKEKDVISWTSLISGVAMHGYAEEALEYFYVMVKNGIVPRD 213

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFE 262
            T+TA++  Y   G++++ +  F+ M +   +      Y  MV    ++ K++ A     
Sbjct: 214 ITFTAVLKAYSHGGLVEKGQEIFESMKRDYRLEPRLEHYGCMVDLLGRAGKLEEAENFIL 273

Query: 263 AMPSRNVSSWNTMITGY 279
            MP +  +      +GY
Sbjct: 274 EMPIKPNAPMKPEHSGY 290



 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 26/264 (9%)

Query: 6   CD--SALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           CD  +A  +F  M R    S+  MI GY +      AR LFD+MP ++LV+W+ M+ GY+
Sbjct: 32  CDLMAAKCIFKMMGRFDVASWTCMIKGYFKCGDVDSARKLFDRMPVKNLVTWSTMINGYL 91

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNA-MLSGYAQNGYADEAREVFYQMPHK-----NAISW 117
           RN     A  +F+ +  + +V+     +S  A  G A  A E  Y+   +     N I  
Sbjct: 92  RNNCFDKAVEIFEILIDEGLVANEVGAVSACAHLG-ALAAGEKAYEHAIRINLDLNVILG 150

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV---- 173
             ++  Y   G +E+A R+F+   + ++ISW  L+ G     M G A +  +  +V    
Sbjct: 151 TAIVDMYARCGNVEKAVRVFEEMKEKDVISWTSLISGVA---MHGYAEEALEYFYVMVKN 207

Query: 174 ----RDVVSWNTMISGYAQDGDMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLD 224
               RD +++  ++  Y+  G + + + +F     D      +  +  MV    + G L+
Sbjct: 208 GIVPRD-ITFTAVLKAYSHGGLVEKGQEIFESMKRDYRLEPRLEHYGCMVDLLGRAGKLE 266

Query: 225 EARTFFDQMPQKNEISYNAMVAGY 248
           EA  F  +MP K         +GY
Sbjct: 267 EAENFILEMPIKPNAPMKPEHSGY 290


>Medtr7g078360.1 | PPR containing plant-like protein | HC |
           chr7:29634869-29632890 | 20130731
          Length = 632

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/512 (39%), Positives = 292/512 (57%), Gaps = 24/512 (4%)

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL- 145
           N +L  YA+ G  + AR++F +MP +    WN +++ Y   G  EEA  LF    D E+ 
Sbjct: 123 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 182

Query: 146 ---ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ- 201
              I+W  ++ G  K+  L  AR  FDKM  R VVSWN M+SGYAQ G   +   LF+  
Sbjct: 183 RNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDM 242

Query: 202 -SP---HQDVFTWTAMVSGYVQNG--MLDEA--RTFFDQMP-QKNEISYNAMVAGYVQSN 252
            SP     D  TW  ++S     G   L E+  R   D++  + N     A++  + +  
Sbjct: 243 LSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCG 302

Query: 253 KMDMARELFEAM---PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
            ++ A ++FE +     R+   WN MI+ Y + GD+  A+ LFD MPQRD VSW ++I+G
Sbjct: 303 NLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAG 362

Query: 310 YAQTGHYEEALNMFIEI--KRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE 367
           Y Q G   +A+ +F E+    D    +  T     S C  +  L LG      +     +
Sbjct: 363 YTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQ 422

Query: 368 TGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM 427
               V N+L+ MY +CGS+ +A  +F+ +  +D+VS+NT+I+G+A HG G +++ +   M
Sbjct: 423 ISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKM 482

Query: 428 KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGR 487
           K  G++PD IT + +L+ACSHAGL+D G   F S+       P   HY CMID+LGRAGR
Sbjct: 483 KEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK-----FPDVDHYACMIDMLGRAGR 537

Query: 488 LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNL 547
           LEEA  L+++MP EP A  +G+LL A+ IH   ELGE AA  +FK+EPHNSG Y LLSN+
Sbjct: 538 LEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYALLSNI 597

Query: 548 YAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           YA++GRW +   +R  MR  GV+K TG SW+E
Sbjct: 598 YASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 629



 Score =  193 bits (491), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 145/526 (27%), Positives = 247/526 (46%), Gaps = 72/526 (13%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLF----DKMPQRDLVSWNV 57
           + G  + A ++F+ MP R+   +N MISGY +      A  LF    D+   R++++W  
Sbjct: 131 KYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTT 190

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-----PHK 112
           M+TG+ +   L  AR  FD MP++ VVSWNAMLSGYAQ G  +E   +F  M        
Sbjct: 191 MITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQP 250

Query: 113 NAISWNGLLAAYVHNGRI---EEACRLFDSKSDWE--LISWNCLMGGFVKRKMLGAARKL 167
           +  +W  ++++    G     E   R  D K  +         L+    K   L AA K+
Sbjct: 251 DETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKI 310

Query: 168 FDKMHV---RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
           F+++ V   R  V WN MIS YA+ GD+  AK+LFD+ P +D  +W +M++GY QNG   
Sbjct: 311 FEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESF 370

Query: 225 EARTFFDQM------PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN----VSSWNT 274
           +A   F++M       + +E++  ++ +      ++ +       +   +    +S +N+
Sbjct: 371 KAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNS 430

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           +I  Y + G +  A  +F  M  RD VS+  +ISG+A+ GH  E++ +  ++K DG   +
Sbjct: 431 LINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPD 490

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           R T+   L+ C+    L+ G+++                                   FE
Sbjct: 491 RITYIAILTACSHAGLLDEGQRL-----------------------------------FE 515

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
            I+  DV  +  MI    R G  ++A+ + +SM    ++P       +L+A S    ++ 
Sbjct: 516 SIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSMP---MEPHAGIYGSLLNATSIHKQVEL 572

Query: 455 GTEYFYSMNKDYSVTP-SSKHYTCMIDLLGRAGRLEE---AQDLMR 496
           G     +  K + V P +S +Y  + ++   AGR +E    +D MR
Sbjct: 573 GE---LAAAKLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMR 615



 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 190/375 (50%), Gaps = 22/375 (5%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF--- 230
           RD    N ++  YA+ G +  A+ LFD+ P + V  W  M+SGY + G  +EA T F   
Sbjct: 117 RDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVM 176

Query: 231 -DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQAR 289
            DQ   +N I++  M+ G+ +   +  AR  F+ MP R+V SWN M++GY Q G   +  
Sbjct: 177 GDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETI 236

Query: 290 KLF-DMMP----QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF---SCA 341
           +LF DM+     Q D  +WA +IS  +  G  +  L+  I  K D +   R  +   +  
Sbjct: 237 RLFNDMLSPGNVQPDETTWATVISSCSSLG--DPCLSESIVRKLDDKVGFRPNYFVKTAL 294

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L   A    LE   +I  Q+    Y +     NA++  Y + G +  A  +F+ + ++D 
Sbjct: 295 LDMHAKCGNLEAAHKIFEQLGVYKYRSSV-PWNAMISAYARVGDLPSAKHLFDKMPQRDT 353

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTI--GVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           VSWN+MIAGY ++G   +A+ +FE M +     KPDE+TMV V SAC H G +  G  + 
Sbjct: 354 VSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGN-WA 412

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGN 519
            S+ K   +  S   Y  +I++  R G +++A  + + M       S+  L+     HG+
Sbjct: 413 VSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATR-DLVSYNTLISGFAEHGH 471

Query: 520 TELGEKAAEMVFKME 534
              G ++ E++ KM+
Sbjct: 472 ---GMESIELLSKMK 483



 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 106/240 (44%), Gaps = 16/240 (6%)

Query: 291 LFDMMPQRDCVSWAAIISGYAQTG-HYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADI 348
           +F      D   +  ++  Y+Q G H +  +++F  + +  +   N S +S  + +    
Sbjct: 43  IFHAATHPDVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSE 102

Query: 349 AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMI 408
           + L L       V+K+GY+   +V N +LG+Y K G I  A  +F+ + ++ V  WN MI
Sbjct: 103 SMLFLA-----HVLKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMI 157

Query: 409 AGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSV 468
           +GY + G  ++A  +F  M    +  + IT   +++  +  G +     YF  M +   V
Sbjct: 158 SGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVV 217

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNM----PFEPPAASWGALLGASRIHGNTELGE 524
           +     +  M+    + G  EE   L  +M      +P   +W  ++ +    G+  L E
Sbjct: 218 S-----WNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSE 272


>Medtr1g007600.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:452191-449631 | 20130731
          Length = 827

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/653 (32%), Positives = 334/653 (51%), Gaps = 72/653 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----Q 80
           NA+I  Y +      A+ + + M Q+D VSWN ++T  V N  + +A  L ++M     +
Sbjct: 173 NALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELE 232

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACR----L 136
            +VV+W+A++ G++ N Y  E+ E+F +M           LA+      +  AC     L
Sbjct: 233 PNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLAS------VLPACSRMKWL 286

Query: 137 FDSKS-DWELISWNCLMGGFVKRKMLG---------AARKLFDKMHVRDVVSWNTMISGY 186
           F  K     ++       GFV   ++G         +A K+F K   +   S+NTMI GY
Sbjct: 287 FVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGY 346

Query: 187 AQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMP-------- 234
            ++G++ +AK LF Q   +    D  +W  M+SG+V N M D+A   F  +         
Sbjct: 347 LENGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDS 406

Query: 235 -------------------------------QKNEISYNAMVAGYVQSNKMDMARELFEA 263
                                          Q N     A+V  Y + N +  A+  F+ 
Sbjct: 407 FTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDE 466

Query: 264 MPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP----QRDCVSWAAIISGYAQTGHYEEA 319
           +  R+ S+WN +I+GY +   I + R+L + M     + +  +W +I++G  +   Y+ A
Sbjct: 467 ISERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLA 526

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
           + +F E++      +  T    L+ C+ +A +  GKQ+H   ++ GY++   +G  L+ M
Sbjct: 527 MQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDM 586

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y KCGSI     V+  I   ++V  N M+  YA HG G++ +++F  M    V+PD +T 
Sbjct: 587 YAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTF 646

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
           + VLS+C HAG I  G E FY M + Y++TP+ KHYTCM+DLL RAG+L+EA  L++NMP
Sbjct: 647 LSVLSSCVHAGSIKIGYECFYLM-ETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMP 705

Query: 500 FEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGN 559
            E  + +W ALLG   IH    LGE AAE + ++EP N+G YVLL+NLYA++GRW D   
Sbjct: 706 MEADSVTWSALLGGCFIHKEVALGEIAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAK 765

Query: 560 MRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
            R  M D G+QK  G SW+E ++ +H F   D  H   + IY  L+ L   +R
Sbjct: 766 TRELMNDKGMQKSPGCSWIEDRDGVHIFLASDKSHQRVEEIYFMLDNLTKFIR 818



 Score =  132 bits (333), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 131/564 (23%), Positives = 232/564 (41%), Gaps = 137/564 (24%)

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS--------K 140
           +L  Y+ N   ++A  +F +M  KN  SW  +L  +++ G   +   LF+         K
Sbjct: 72  LLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEK 131

Query: 141 SDW----ELISWNCLMGGF-VKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
            D+     +++  C +G   + R++ G   K      V +V   N +I  Y + G + +A
Sbjct: 132 LDFFVFPVVLNICCGLGDLELGRQVHGMVLK---HGFVTNVYVGNALIDMYGKCGSLDEA 188

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQS 251
           K + +    +D  +W ++++  V NG++ EA    + M     + N ++++A++ G+  S
Sbjct: 189 KKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGF-SS 247

Query: 252 NKMDM-----------------ARELFEAMPSRNVSSW---------------------- 272
           N  D+                 AR L   +P+ +   W                      
Sbjct: 248 NAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFV 307

Query: 273 -NTMITGYGQNGD-------------------------------IAQARKLFDMMPQ--- 297
            N ++  Y + GD                               + +A++LF  M Q   
Sbjct: 308 ANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGV 367

Query: 298 -RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQ 356
            RD +SW  +ISG+     +++AL +F ++  +G   +  T    L+  AD+  +  GK+
Sbjct: 368 ERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKE 427

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR--- 413
           IH   +  G ++  FVG AL+ MY KC  I  A   F+ I E+D  +WN +I+GYAR   
Sbjct: 428 IHSIAIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQ 487

Query: 414 -------------HGF----------------GKQ---ALMVFESMKTIGVKPDEITMVG 441
                         GF                 KQ   A+ +F  M+   ++PD  T+  
Sbjct: 488 IGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGI 547

Query: 442 VLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHY-TCMIDLLGRAGRLEEAQDLMRNMP 499
           +L+ACS    I RG + + YS+   Y    S  H    ++D+  + G ++    +   + 
Sbjct: 548 ILAACSKLATIHRGKQVHAYSIRAGYD---SDAHIGATLVDMYAKCGSIKHCYQVYNKIS 604

Query: 500 FEPPAASWGALLGASRIHGNTELG 523
             P      A+L A  +HG+ E G
Sbjct: 605 -NPNLVCHNAMLTAYAMHGHGEEG 627



 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 204/472 (43%), Gaps = 86/472 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ----RDLVSWNV 57
           R G   SA ++F+   R+ + SYN MI GYL N     A++LF +M Q    RD +SWN 
Sbjct: 317 RCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNC 376

Query: 58  MLTGYVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           M++G+V N    DA  LF  +     + D  +  ++L+G+A      + +E+     H  
Sbjct: 377 MISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEI-----HSI 431

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
           AI       ++V    +E  C+  D                      + AA+  FD++  
Sbjct: 432 AIVKGLQSNSFVGGALVEMYCKCND----------------------IIAAQMAFDEISE 469

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTF 229
           RD  +WN +ISGYA+   + + + L ++        +V+TW ++++G V+N   D A   
Sbjct: 470 RDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQL 529

Query: 230 FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWN-------------TMI 276
           F++M Q + +  +    G +    +    +L      + V +++             T++
Sbjct: 530 FNEM-QVSSLRPDIYTVGII----LAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLV 584

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y + G I    ++++ +   + V   A+++ YA  GH EE + +F  +       +  
Sbjct: 585 DMYAKCGSIKHCYQVYNKISNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHV 644

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV-------------GNALLGMYFKC 383
           TF   LS+C           +H   +K GYE  CF                 ++ +  + 
Sbjct: 645 TFLSVLSSC-----------VHAGSIKIGYE--CFYLMETYNITPTLKHYTCMVDLLSRA 691

Query: 384 GSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
           G + EA  + + +  E D V+W+ ++ G   H   + AL    + K I ++P
Sbjct: 692 GKLDEAYQLIKNMPMEADSVTWSALLGGCFIH--KEVALGEIAAEKLIELEP 741



 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
           L  +T+S  L +     +L LGKQ+H   +KTG+    FV   LL MY    S  +A  +
Sbjct: 32  LTSTTYSTILQSSN---SLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHM 88

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT--IGVKPDEITMVGVLSACSHAG 450
           F+ +  K++ SW  ++  +   G   +  M+FE      +G K D      VL+ C   G
Sbjct: 89  FDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLG 148

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
            ++ G +  + M   +    +      +ID+ G+ G L+EA+ ++  M  +    SW ++
Sbjct: 149 DLELGRQ-VHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMT-QKDCVSWNSI 206

Query: 511 LGASRIHG 518
           + A   +G
Sbjct: 207 ITACVANG 214


>Medtr2g436470.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:14170762-14173219 | 20130731
          Length = 503

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/465 (40%), Positives = 271/465 (58%), Gaps = 5/465 (1%)

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVS 302
           ++++ Y    + ++A  +F  +   N+ + N +I    ++G+   A+K+FD MP RD V+
Sbjct: 44  SLISTYAHCQQPNIAHHVFSRV--MNLFNMNLVIESLVKSGECDIAKKVFDKMPVRDVVT 101

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
           W  +I GY +   + +AL++F  + +     +  TF+  ++ CA + +    K +HG +V
Sbjct: 102 WNTVIGGYVKNLRFLDALSIFRVMLKAKVEPDGFTFASVVTGCARLGSFCNAKWVHGLMV 161

Query: 363 KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALM 422
           +   E    +  AL+ MY KCG +  + +VFE +    V  WN MI G A HG    A +
Sbjct: 162 EKKVELNYILTAALVDMYAKCGRVDVSKEVFECVVRDHVSVWNAMINGLAIHGHALDATV 221

Query: 423 VFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLL 482
           VF  M+   V PD +T VG+L  CSH GL++ G +YF  M   + + P  KHY  M+DLL
Sbjct: 222 VFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYFEMMQNRFFIQPQLKHYGTMVDLL 281

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYV 542
           GRAG LEEA  +++ M  EP    W +LL A RIHG  ELGE A   + ++E   SG +V
Sbjct: 282 GRAGHLEEAYSMIKAMSVEPDVVIWRSLLSACRIHGKKELGEFAIANISRLE---SGDFV 338

Query: 543 LLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYA 602
           LLSN+Y +   W  A  +R  M+  GV+K  G SW+E+   IH+F   D  H E   IY 
Sbjct: 339 LLSNMYCSFKNWHGAERVRHMMKKGGVRKKRGKSWIELGGSIHQFNAADQSHAEMKAIYR 398

Query: 603 FLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIK 662
            LE L  + + EG+   T+LVL DV EEEKE  L +HSEKLA+A+G+L    G  I + K
Sbjct: 399 VLEGLMQRAKLEGFTPLTELVLMDVSEEEKEANLTFHSEKLALAYGVLKSSPGTKITISK 458

Query: 663 NLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           NLR+C+DCHN IK +S+I+ R II+RD  RFH F  G CSCGDYW
Sbjct: 459 NLRICQDCHNWIKIVSRILNREIIVRDRIRFHQFEGGCCSCGDYW 503



 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 14/216 (6%)

Query: 120 LLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
           L++ Y H  +   A  +F    +  L + N ++   VK      A+K+FDKM VRDVV+W
Sbjct: 45  LISTYAHCQQPNIAHHVFSRVMN--LFNMNLVIESLVKSGECDIAKKVFDKMPVRDVVTW 102

Query: 180 NTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           NT+I GY ++     A ++F          D FT+ ++V+G  + G    A+     M +
Sbjct: 103 NTVIGGYVKNLRFLDALSIFRVMLKAKVEPDGFTFASVVTGCARLGSFCNAKWVHGLMVE 162

Query: 236 K----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
           K    N I   A+V  Y +  ++D+++E+FE +   +VS WN MI G   +G    A  +
Sbjct: 163 KKVELNYILTAALVDMYAKCGRVDVSKEVFECVVRDHVSVWNAMINGLAIHGHALDATVV 222

Query: 292 FDMMPQR----DCVSWAAIISGYAQTGHYEEALNMF 323
           F  M       D V++  I+ G +  G  E     F
Sbjct: 223 FSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYF 258



 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 137/304 (45%), Gaps = 39/304 (12%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVS 85
           ++IS Y    + ++A  +F ++   +L + N+++   V++     A+++FD MP +DVV+
Sbjct: 44  SLISTYAHCQQPNIAHHVFSRV--MNLFNMNLVIESLVKSGECDIAKKVFDKMPVRDVVT 101

Query: 86  WNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNG--RIEEACRLFDSKSDW 143
           WN ++ GY +N    +A  +F  M  K  +  +G   A V  G  R+   C      + W
Sbjct: 102 WNTVIGGYVKNLRFLDALSIFRVML-KAKVEPDGFTFASVVTGCARLGSFC-----NAKW 155

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP 203
                  + G  V++K+              + +    ++  YA+ G +  +K +F+   
Sbjct: 156 -------VHGLMVEKKV------------ELNYILTAALVDMYAKCGRVDVSKEVFECVV 196

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAGYVQSNKMDMARE 259
              V  W AM++G   +G   +A   F +M  +N     +++  ++ G      +++ R+
Sbjct: 197 RDHVSVWNAMINGLAIHGHALDATVVFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRK 256

Query: 260 LFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQT 313
            FE M +R      +  + TM+   G+ G + +A  +   M  + D V W +++S     
Sbjct: 257 YFEMMQNRFFIQPQLKHYGTMVDLLGRAGHLEEAYSMIKAMSVEPDVVIWRSLLSACRIH 316

Query: 314 GHYE 317
           G  E
Sbjct: 317 GKKE 320



 Score = 79.7 bits (195), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 124/278 (44%), Gaps = 51/278 (18%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV- 83
           N +I   +++    +A+ +FDKMP RD+V+WN ++ GYV+N R  DA  +F  M +  V 
Sbjct: 72  NLVIESLVKSGECDIAKKVFDKMPVRDVVTWNTVIGGYVKNLRFLDALSIFRVMLKAKVE 131

Query: 84  ---VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRL 136
               ++ ++++G A+ G    A+ V   M  K    N I    L+  Y   GR++ +  +
Sbjct: 132 PDGFTFASVVTGCARLGSFCNAKWVHGLMVEKKVELNYILTAALVDMYAKCGRVDVSKEV 191

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVS-WNTMISGYAQDGDMSQA 195
           F+           C+                     VRD VS WN MI+G A  G    A
Sbjct: 192 FE-----------CV---------------------VRDHVSVWNAMINGLAIHGHALDA 219

Query: 196 KNLFDQSPHQDVF----TWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVA 246
             +F +   ++V     T+  ++ G    G+++  R +F+ M  +  I      Y  MV 
Sbjct: 220 TVVFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYFEMMQNRFFIQPQLKHYGTMVD 279

Query: 247 GYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNG 283
              ++  ++ A  + +AM    +V  W ++++    +G
Sbjct: 280 LLGRAGHLEEAYSMIKAMSVEPDVVIWRSLLSACRIHG 317



 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARF----SLARDLFDKMPQRDLVSWN 56
           +++G CD A +VF+ MP R  V++N +I GY++N RF    S+ R +     + D  ++ 
Sbjct: 79  VKSGECDIAKKVFDKMPVRDVVTWNTVIGGYVKNLRFLDALSIFRVMLKAKVEPDGFTFA 138

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMPHK 112
            ++TG  R     +A+ +   M +K V    +   A++  YA+ G  D ++EVF  +   
Sbjct: 139 SVVTGCARLGSFCNAKWVHGLMVEKKVELNYILTAALVDMYAKCGRVDVSKEVFECVVRD 198

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKR----KMLGAARKLF 168
           +   WN ++     +G   +A  +F       ++  +    G +K      ++   RK F
Sbjct: 199 HVSVWNAMINGLAIHGHALDATVVFSRMEVENVLPDSVTFVGILKGCSHCGLVEVGRKYF 258

Query: 169 DKMHVRDVVS-----WNTMISGYAQDGDMSQAKNLFD-QSPHQDVFTWTAMVSG 216
           + M  R  +      + TM+    + G + +A ++    S   DV  W +++S 
Sbjct: 259 EMMQNRFFIQPQLKHYGTMVDLLGRAGHLEEAYSMIKAMSVEPDVVIWRSLLSA 312


>Medtr2g042550.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:18562024-18564318 | 20130731
          Length = 740

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 308/564 (54%), Gaps = 36/564 (6%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA--------KNLFDQSPHQDVFTWTA 212
           L  A K+F+ +    +  +NT+IS      + +Q         K L +++   + FT+ +
Sbjct: 196 LPYAFKIFNYISNPTIFLYNTLISSLINQTNQNQIHLAFSLYNKILTNKNLQPNSFTFPS 255

Query: 213 MVSGYVQN-------GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP 265
           +      N        +L      F Q P  N +   +++  Y +  KM ++R +F+ + 
Sbjct: 256 LFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQ-ASLLNFYAKYGKMCVSRYIFDRIN 314

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
             ++++WN ++  Y ++         FD                        E+L +F +
Sbjct: 315 EPDLATWNVILNAYARSSSYHSYSNSFD------------------DADFSLESLYLFRD 356

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           ++  G   N  T    +S C+++ A+  G  +H  V++   +   FVG A + MY KCG 
Sbjct: 357 MQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGC 416

Query: 386 IGEANDVFEGIEE--KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVL 443
           +  A  VF+ + E  +D   +  MI G+A HG+G QAL ++  MK  G+ PD  T V  +
Sbjct: 417 LNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTM 476

Query: 444 SACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
            ACSH GL++ G E F SM + + V P  +HY C+IDLLGRAGRL+EA++ + +MP +P 
Sbjct: 477 FACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPN 536

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSR 563
           A  W +LLGA+RIHGN  +GE A   + ++EP  SG YVLLSN+YA+ GR  D   +R  
Sbjct: 537 AVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKL 596

Query: 564 MRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
           M+  GV K+ G+S VE++  +H+F  GD  HP    IY  + E++ ++   G+ + T   
Sbjct: 597 MKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEA 656

Query: 624 LHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGR 683
           L D+EEE+KE +L YHSE+LA+AF ++  P+   IR+IKNLRVC DCH   K IS    R
Sbjct: 657 LFDLEEEDKEGVLSYHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHR 716

Query: 684 LIILRDSHRFHHFNEGICSCGDYW 707
            II+RD +RFHHF +G CSC DYW
Sbjct: 717 EIIVRDRNRFHHFKDGSCSCLDYW 740



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 127/315 (40%), Gaps = 47/315 (14%)

Query: 26  AMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVS 85
           ++++ Y +  +  ++R +FD++ + DL +WNV+L  Y R+         FD         
Sbjct: 292 SLLNFYAKYGKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDDA------- 344

Query: 86  WNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEA----CRLF 137
                       ++ E+  +F  M       N ++   L++A  + G + +     C + 
Sbjct: 345 -----------DFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVL 393

Query: 138 DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--HVRDVVSWNTMISGYAQDGDMSQA 195
            +K           +  + K   L  A ++FDKM  + RD   +  MI G+A  G  +QA
Sbjct: 394 RNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQA 453

Query: 196 KNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAM 244
             L+ +       P    F  T     +V  G+++E    F  M + + +      Y  +
Sbjct: 454 LELYRKMKFKGLVPDSATFVVTMFACSHV--GLVEEGLEIFKSMKEVHGVEPKLEHYGCL 511

Query: 245 VAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQAR----KLFDMMPQRD 299
           +    ++ ++  A E    MP + N   W +++     +G++        KL ++ P+  
Sbjct: 512 IDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETS 571

Query: 300 CVSWAAIISGYAQTG 314
             ++  + + YA  G
Sbjct: 572 G-NYVLLSNMYASVG 585


>Medtr5g027980.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:11695650-11697815 | 20130731
          Length = 446

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/436 (39%), Positives = 273/436 (62%), Gaps = 1/436 (0%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N++I  YG+ G+I  A  +F+ M ++   SW+AII  +A    + E L +  ++  +G  
Sbjct: 11  NSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMSSEGRC 70

Query: 333 -LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
            +  ST    LS C  + + +LGK IHG +++   E    V  +L+ MY K G + +   
Sbjct: 71  RVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCLEKGLR 130

Query: 392 VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGL 451
           VF+ + EK+  S+  MI+G A HG GK+AL VF  M   G+ PD++  VGV SACSHAGL
Sbjct: 131 VFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGL 190

Query: 452 IDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           ++ G + F SM  ++ + P+ +HY CM+DLLGR G L+EA +L+++M  +P    W +LL
Sbjct: 191 VEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVIWRSLL 250

Query: 512 GASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
            A ++H N E+G+ AAE +F +  +NSG Y++L+N+YA + +W D   +R+++ +  + +
Sbjct: 251 SACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAERNLVQ 310

Query: 572 VTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEE 631
             G+S +E + K++KF   D   P+ + IY  + +++ +++ EGY+  T  VL DV++EE
Sbjct: 311 TPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLDVDDEE 370

Query: 632 KEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSH 691
           K+  LK+HS+KLA+AFG++    G P+R+ +NLR+C DCH   K+IS I  R I +RD  
Sbjct: 371 KKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREITVRDRL 430

Query: 692 RFHHFNEGICSCGDYW 707
           RFHHF  G CSC DYW
Sbjct: 431 RFHHFKNGSCSCKDYW 446



 Score = 80.1 bits (196), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVF 424
           G E    V N+L+ MY KCG I  A DVF G++EK V SW+ +I  +A      + LM+ 
Sbjct: 2   GLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLL 61

Query: 425 ESMKTIG-VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
             M + G  + +E T+V VLSAC+H G  D G      + ++ S   +    T +ID+  
Sbjct: 62  GKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNIS-ELNVVVKTSLIDMYV 120

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           ++G LE+   + +NM  E    S+  ++    IHG
Sbjct: 121 KSGCLEKGLRVFKNMS-EKNRYSYTVMISGLAIHG 154



 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 44/282 (15%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           DV+  N++I+ Y + G++  A ++F+    + V +W+A++  +    M +E      +M 
Sbjct: 6   DVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMS 65

Query: 235 QK-----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWN-----TMITGYGQNGD 284
            +      E +   +++        D+ +     +  RN+S  N     ++I  Y ++G 
Sbjct: 66  SEGRCRVEESTLVNVLSACTHLGSPDLGK-CIHGILLRNISELNVVVKTSLIDMYVKSGC 124

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           + +  ++F  M +++  S+  +ISG A  G  +EAL +F E+  +G + +   +    S 
Sbjct: 125 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 184

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           C+    +E G Q             CF                  +  FE   E  V  +
Sbjct: 185 CSHAGLVEEGLQ-------------CF-----------------KSMQFEHKIEPTVQHY 214

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
             M+    R G  K+A   +E +K++ +KP+++    +LSAC
Sbjct: 215 GCMVDLLGRFGMLKEA---YELIKSMSIKPNDVIWRSLLSAC 253



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 104/261 (39%), Gaps = 21/261 (8%)

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
           + I  N L+  Y   G I+ AC +F+   +  + SW+ ++G     +M      L  KM 
Sbjct: 6   DVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKMS 65

Query: 173 V--RDVVSWNTMIS-----GYAQDGDMSQAKN--LFDQSPHQDVFTWTAMVSGYVQNGML 223
              R  V  +T+++      +    D+ +  +  L       +V   T+++  YV++G L
Sbjct: 66  SEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGCL 125

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGY---- 279
           ++    F  M +KN  SY  M++G     +   A ++F  M    ++  + +  G     
Sbjct: 126 EKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSAC 185

Query: 280 GQNGDIAQARKLFDMMP-----QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
              G + +  + F  M      +     +  ++    + G  +EA  +   IK      N
Sbjct: 186 SHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYEL---IKSMSIKPN 242

Query: 335 RSTFSCALSTCADIAALELGK 355
              +   LS C     LE+GK
Sbjct: 243 DVIWRSLLSACKVHHNLEIGK 263


>Medtr1g099590.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:44985847-44989750 | 20130731
          Length = 912

 Score =  361 bits (927), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/672 (31%), Positives = 352/672 (52%), Gaps = 55/672 (8%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           + +LV    ++  Y + RR+ DA ++ +  P+ DV  W  ++SG+ QN    EA  VF  
Sbjct: 250 ELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRD 309

Query: 109 MPHK----NAISWNGLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKM 160
           M       N  +++ LL A      ++       R+     + +L   N L+  ++K   
Sbjct: 310 MELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSH 369

Query: 161 LGA-ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVS 215
           +   A K+F ++   +V+ W ++I+G+A+   +  +  LF +     V    FT +A++ 
Sbjct: 370 ITTNAVKVFREITSPNVMCWTSLIAGFAEK-RLEDSFQLFAEMQAAGVRPNSFTMSAIL- 427

Query: 216 GYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
                G   + R+    M          M+ G++   K+D+           +++  N +
Sbjct: 428 -----GACSKTRSLVPTM----------MLHGHIIKTKVDI-----------DIAVANAL 461

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           +  Y   G I +A  +   M  RD +++  + +   Q GH+  AL + I +  DG  ++ 
Sbjct: 462 VDTYAGVGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDE 521

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
            + +  LS  A +  +E GKQ+H   VK+G++    V N+L+ +Y KCGSI +AN  F+ 
Sbjct: 522 FSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKD 581

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           I E D  SWN +I+G++ +G    AL  F+ M+  GVKPD IT++ ++SACSH GL++ G
Sbjct: 582 ISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELG 641

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
            EYF+SM K+Y +TP   HY C++DLLGR GRLEEA  ++  M F+P +     LL A  
Sbjct: 642 LEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNACN 701

Query: 516 IHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY 575
           +HGN  LGE  A    +++P +  +Y+LL+NLY  +G        R  MR+ G+++  G 
Sbjct: 702 LHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQ 761

Query: 576 SWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHM 635
            W+E+++++H F+ G+     +D I   LE L  + R   Y           +E E +  
Sbjct: 762 CWMEIRSRVHHFSAGE--KINEDEITEKLEFLITEFRNRRY---------QYQENEDKF- 809

Query: 636 LKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHH 695
             YH E+LAVAFG+L  P+  PIR+ KN  +C  CH  I   ++++GR II+RD  RFH 
Sbjct: 810 --YHPEQLAVAFGVLNAPSTSPIRIYKNSLICSHCHTFIMLSTQVIGREIIMRDRKRFHF 867

Query: 696 FNEGICSCGDYW 707
           F +G CSC D +
Sbjct: 868 FKDGQCSCRDIF 879



 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 188/412 (45%), Gaps = 39/412 (9%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q DL   N +L+ Y +   +  AR LFD MP +DVVSW  +LS + +  +  +A ++F  
Sbjct: 46  QHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDM 105

Query: 109 M----PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           M     + N  + +  L +    G  E   ++  S      +     M  FV   ++   
Sbjct: 106 MIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSA-----VKLGLEMNRFVGTSLV--- 157

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
            + + K     V +W  +     +DG               DV +WT M+S  V+NG   
Sbjct: 158 -EFYTKCGCCSVEAWKLL--SLVKDGG--------------DVVSWTTMLSSLVENGKWG 200

Query: 225 EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM----PSRNVSSWNTMI 276
           EA   + +M +     NE ++  ++        +   + L   +       N+     ++
Sbjct: 201 EAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVV 260

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y +   +  A K+ ++ P+ D   W  +ISG+ Q     EA+++F +++  G   N  
Sbjct: 261 DMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNF 320

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSI-GEANDVFEG 395
           T+S  L+  + I +L+LG+Q H +V+  G E   ++GNAL+ MY KC  I   A  VF  
Sbjct: 321 TYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFRE 380

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           I   +V+ W ++IAG+A     + +  +F  M+  GV+P+  TM  +L ACS
Sbjct: 381 ITSPNVMCWTSLIAGFAEKRL-EDSFQLFAEMQAAGVRPNSFTMSAILGACS 431



 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 128/551 (23%), Positives = 233/551 (42%), Gaps = 73/551 (13%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM------ 78
           N ++S Y +      AR LFD+MP RD+VSW  +L+ + + +   DA +LFD M      
Sbjct: 53  NNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEY 112

Query: 79  PQKDVVS-------------------WNAMLSGYAQNGYADEAREVFYQ----------- 108
           P +  +S                    +A+  G   N +   +   FY            
Sbjct: 113 PNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWK 172

Query: 109 -----MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGA 163
                    + +SW  +L++ V NG+  EA  ++      ++I        F   K+LGA
Sbjct: 173 LLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIY-----VKMIESGVYPNEFTFVKLLGA 227

Query: 164 ARKLF-----DKMHVR--------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW 210
                       +H          ++V    ++  Y++   M  A  + + +P  DV+ W
Sbjct: 228 VSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLW 287

Query: 211 TAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR--- 267
           T ++SG+ QN  + EA + F  M     +  N   +  + ++   ++ +L E   SR   
Sbjct: 288 TTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVII 347

Query: 268 -----NVSSWNTMITGYGQNGDI-AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
                ++   N ++  Y +   I   A K+F  +   + + W ++I+G+A+    E++  
Sbjct: 348 VGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEK-RLEDSFQ 406

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
           +F E++  G   N  T S  L  C+   +L     +HG ++KT  +    V NAL+  Y 
Sbjct: 407 LFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYA 466

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
             G I EA  V   +  +D +++  + A   + G    AL V   M   G+K DE ++  
Sbjct: 467 GVGMIDEAWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLAS 526

Query: 442 VLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
            LSA +  G ++ G + + YS+   +    S  +   ++ L  + G + +A    +++  
Sbjct: 527 FLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSN--SLVHLYSKCGSIHDANRAFKDIS- 583

Query: 501 EPPAASWGALL 511
           EP A SW  L+
Sbjct: 584 EPDAFSWNGLI 594



 Score =  123 bits (309), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 135/288 (46%), Gaps = 35/288 (12%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           N +++ Y +   + +AR LFD MP RD VSW  I+S + +T H+ +AL +F  +   GE 
Sbjct: 53  NNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEY 112

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG-EAND 391
            N  T S AL +C  +   E G QIH   VK G E   FVG +L+  Y KCG    EA  
Sbjct: 113 PNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWK 172

Query: 392 VFEGIEE-KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS--- 447
           +   +++  DVVSW TM++    +G   +A  ++  M   GV P+E T V +L A S   
Sbjct: 173 LLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFL 232

Query: 448 --------HAGLIDRGTEYFYSMN-----------------KDYSVTPSSKHY--TCMID 480
                   HA LI  G E    +                  K  ++TP    Y  T +I 
Sbjct: 233 GLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLIS 292

Query: 481 LLGRAGRLEEAQDLMRNMPFE---PPAASWGALLGASRIHGNTELGEK 525
              +  ++ EA  + R+M      P   ++ +LL AS    + +LGE+
Sbjct: 293 GFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQ 340



 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D+   N ++S YA+   + +A++LFD+ P++DV +WT ++S + +     +A   FD M 
Sbjct: 48  DLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMI 107

Query: 235 QKNEISYNAMVAGYVQS--------NKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIA 286
              E      ++  ++S          M +     +     N     +++  Y + G  +
Sbjct: 108 GSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCS 167

Query: 287 -QARKLFDMMPQR-DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
            +A KL  ++    D VSW  ++S   + G + EA  +++++   G   N  TF   L  
Sbjct: 168 VEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGA 227

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
            +    L  GK +H  ++  G E    +  A++ MY KC  + +A  V     E DV  W
Sbjct: 228 VSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLW 287

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            T+I+G+ ++   ++A+ VF  M+  G+ P+  T   +L+A S    +D G ++
Sbjct: 288 TTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQF 341



 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 3/135 (2%)

Query: 332 SLNRSTFSC--ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
           SL+R   +C   LS C +  +L+ G  IH  ++K G +   ++ N LL +Y K   +  A
Sbjct: 10  SLSRFQETCLRVLSFC-NSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRA 68

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             +F+ +  +DVVSW T+++ + +      AL +F+ M   G  P+E T+   L +C   
Sbjct: 69  RHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFAL 128

Query: 450 GLIDRGTEYFYSMNK 464
           G  +RG +   S  K
Sbjct: 129 GEFERGMQIHCSAVK 143


>Medtr4g011730.1 | PPR containing plant-like protein | HC |
           chr4:2939745-2937455 | 20130731
          Length = 706

 Score =  360 bits (925), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/621 (32%), Positives = 337/621 (54%), Gaps = 62/621 (9%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDV--VSWNAMLSGYAQNGYADEAREVFYQMPHKNAI 115
           ++  Y R   + +AR++F + P + +  + WN+++     +GY + A ++++QM     +
Sbjct: 64  LIATYSRFNSISEARKIFTTTPFESLSNLVWNSIIRANVSHGYYNYAVKIYHQMMKFGFL 123

Query: 116 SWNGLLAAYVHN-GRIEEA-------CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
                L   + +  +I          C + ++     +   N L+G + K + +  A K+
Sbjct: 124 PDGFTLPLIIKSCSKIGSVGLCKIVHCHVLETGFKNHVHVVNELVGMYGKVRRMEDACKV 183

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD----QSPHQDVFTWTAMVSGYVQNGML 223
           FD M VR V+SWNT++SGYA + D   A  +F     +    +  TWT+++S + + G+ 
Sbjct: 184 FDGMVVRSVLSWNTLVSGYAFNFDYVGAFRVFKRMELEGLEPNYVTWTSLLSSHARCGLF 243

Query: 224 DEARTFFDQMPQKN-EISYNAM------------------VAGYV--------------- 249
           DE    F  M  K  EIS  A+                  + G+V               
Sbjct: 244 DETMELFKVMRIKGIEISGEAVAVVLSVCADMDGVQRGKEIHGFVIKGGYEDYLFVKNAL 303

Query: 250 ------QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-------P 296
                 +   +  A ++F  + ++++ SWN +I+ Y  +G    A ++F  +       P
Sbjct: 304 IGIYGKKREDLGDAHKIFSDIKNKSLVSWNALISSYADSGLCDDAYEVFLKLEKSNGHSP 363

Query: 297 QR-DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
            R + +SW+A+ISG+A  G  E++L +F +++      N  T S  LS CA++AAL LG+
Sbjct: 364 VRPNVISWSAVISGFASKGRLEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGR 423

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
           ++H   ++   +    VGN L+ MY KCG   EA+ VF+ I+ +D++SWN++I GY  HG
Sbjct: 424 ELHAYAIRNLMDDNILVGNGLVNMYMKCGVFEEAHLVFDNIKGRDLISWNSLIGGYGMHG 483

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY 475
            G+ A+  F+ M   G++PD+IT V VLSACSHAGL+  G   F  M  ++S+ P+ +HY
Sbjct: 484 LGENAVRTFDEMINAGLRPDKITFVAVLSACSHAGLVAAGRNLFDRMVTEFSIEPTVEHY 543

Query: 476 TCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEP 535
            CM+DLLGRAG L+EA D++RNMP EP    WGALL + R++ +T+L E+    +  ++ 
Sbjct: 544 ACMVDLLGRAGLLQEAHDIVRNMPIEPNECVWGALLNSCRMYRDTDLIEEIESRILALKS 603

Query: 536 HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHP 595
             +G ++LLSN+YA SG+  D+  +R   ++ G +K+ G SW+EV+ K++ F+ G+  H 
Sbjct: 604 EITGSFMLLSNIYADSGKREDSARVRVSAKEKGFKKIPGQSWIEVRKKVYTFSAGNVVHL 663

Query: 596 EKDRIYAFLEELDLKMRREGY 616
           E+D I+A L EL L+M    Y
Sbjct: 664 EQDEIFAILNELALQMASVHY 684



 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 195/421 (46%), Gaps = 43/421 (10%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----Q 80
           N ++  Y +  R   A  +FD M  R ++SWN +++GY  N     A R+F  M     +
Sbjct: 165 NELVGMYGKVRRMEDACKVFDGMVVRSVLSWNTLVSGYAFNFDYVGAFRVFKRMELEGLE 224

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIE-------EA 133
            + V+W ++LS +A+ G  DE  E+F  M  K  I  +G   A V +   +       + 
Sbjct: 225 PNYVTWTSLLSSHARCGLFDETMELFKVMRIK-GIEISGEAVAVVLSVCADMDGVQRGKE 283

Query: 134 CRLFDSKSDWE--LISWNCLMGGF-VKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
              F  K  +E  L   N L+G +  KR+ LG A K+F  +  + +VSWN +IS YA  G
Sbjct: 284 IHGFVIKGGYEDYLFVKNALIGIYGKKREDLGDAHKIFSDIKNKSLVSWNALISSYADSG 343

Query: 191 DMSQAKNLF-------DQSP-HQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNE 238
               A  +F         SP   +V +W+A++SG+   G L+++   F QM       N 
Sbjct: 344 LCDDAYEVFLKLEKSNGHSPVRPNVISWSAVISGFASKGRLEKSLELFRQMQLAKVMANC 403

Query: 239 ISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
           ++ +++++   +   +++ REL       +   N+   N ++  Y + G   +A  +FD 
Sbjct: 404 VTISSVLSVCAELAALNLGRELHAYAIRNLMDDNILVGNGLVNMYMKCGVFEEAHLVFDN 463

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
           +  RD +SW ++I GY   G  E A+  F E+   G   ++ TF   LS C+    +  G
Sbjct: 464 IKGRDLISWNSLIGGYGMHGLGENAVRTFDEMINAGLRPDKITFVAVLSACSHAGLVAAG 523

Query: 355 KQIHGQVVK------TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTM 407
           + +  ++V       T     C V   LLG   + G + EA+D+   +  E +   W  +
Sbjct: 524 RNLFDRMVTEFSIEPTVEHYACMVD--LLG---RAGLLQEAHDIVRNMPIEPNECVWGAL 578

Query: 408 I 408
           +
Sbjct: 579 L 579



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 150/306 (49%), Gaps = 34/306 (11%)

Query: 56  NVMLTGYVRNRR-LGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK-- 112
           N ++  Y + R  LGDA ++F  +  K +VSWNA++S YA +G  D+A EVF ++     
Sbjct: 301 NALIGIYGKKREDLGDAHKIFSDIKNKSLVSWNALISSYADSGLCDDAYEVFLKLEKSNG 360

Query: 113 ------NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCL-MGGFVKRKMLGAAR 165
                 N ISW+ +++ +   GR+E++  LF      ++++ NC+ +   +      AA 
Sbjct: 361 HSPVRPNVISWSAVISGFASKGRLEKSLELFRQMQLAKVMA-NCVTISSVLSVCAELAAL 419

Query: 166 KLFDKMHV--------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY 217
            L  ++H          +++  N +++ Y + G   +A  +FD    +D+ +W +++ GY
Sbjct: 420 NLGRELHAYAIRNLMDDNILVGNGLVNMYMKCGVFEEAHLVFDNIKGRDLISWNSLIGGY 479

Query: 218 VQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----N 268
             +G+ + A   FD+M     + ++I++ A+++    +  +   R LF+ M +       
Sbjct: 480 GMHGLGENAVRTFDEMINAGLRPDKITFVAVLSACSHAGLVAAGRNLFDRMVTEFSIEPT 539

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMP--QRDCVSWAAIISG---YAQTGHYEEALNMF 323
           V  +  M+   G+ G + +A  +   MP    +CV W A+++    Y  T   EE  +  
Sbjct: 540 VEHYACMVDLLGRAGLLQEAHDIVRNMPIEPNECV-WGALLNSCRMYRDTDLIEEIESRI 598

Query: 324 IEIKRD 329
           + +K +
Sbjct: 599 LALKSE 604



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG--IEEKDVVSWNTM 407
            L+  +QIH Q++ T      F+   L+  Y +  SI EA  +F     E    + WN++
Sbjct: 38  TLQQARQIHTQLILTTTHHSSFLSARLIATYSRFNSISEARKIFTTTPFESLSNLVWNSI 97

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
           I     HG+   A+ ++  M   G  PD  T+  ++ +CS  G
Sbjct: 98  IRANVSHGYYNYAVKIYHQMMKFGFLPDGFTLPLIIKSCSKIG 140


>Medtr7g113540.1 | PPR containing plant-like protein | HC |
           chr7:46789868-46787166 | 20130731
          Length = 650

 Score =  359 bits (921), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 324/599 (54%), Gaps = 26/599 (4%)

Query: 44  FDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAR 103
           FD   +  L  WN +L+ Y +     +A  +FD MP +D VSWN M+SG+ +NG  D + 
Sbjct: 69  FDGSQRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSF 128

Query: 104 EVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGA 163
           + F QM   N +      A         +  RL  S S  ++I     +GGF        
Sbjct: 129 KFFKQMTESNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFE------- 181

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
                     R++   N +I+ Y +    SQ + +FD+   ++V TWTA++SG  QN   
Sbjct: 182 ----------REITVGNALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFY 231

Query: 224 DEARTFFDQMPQKNEISYNAM--VAGYVQSNKMDMARE-------LFEAMPSRNVSSWNT 274
           +++   F QM     +S N +  ++  +  + + + R+       L++     ++   + 
Sbjct: 232 EDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESA 291

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           ++  Y + G +  A ++F+   + D VS   I+  +AQ G  EEA+ +F ++   G  ++
Sbjct: 292 LMDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVD 351

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
            +  S  L        L LGKQIH  ++K  +    FVGN L+ MY KCG + ++  VF 
Sbjct: 352 ANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFY 411

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
            + +K+ VSWN++IA +ARHG G +AL  +E M+  GV P ++T + +L ACSHAGL+++
Sbjct: 412 QMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEK 471

Query: 455 GTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS 514
           G E   SM  D+ ++P S+HY C++D+LGRAG L EA+  +  +P       W ALLGA 
Sbjct: 472 GMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLGAC 531

Query: 515 RIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTG 574
            IHG++E+G+ AA+ +F   P +   YVL++N+Y++ G W +  +   RM+++GV K  G
Sbjct: 532 SIHGDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKEVG 591

Query: 575 YSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKE 633
            SW+E++ K++ F VGD  HPE D I+  L  L   ++ EGYV   K +L  +E+++++
Sbjct: 592 ISWIEIEKKVNSFVVGDKLHPEADVIFWVLSGLLKHLKDEGYVPDKKFILFYLEQDKED 650



 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 202/456 (44%), Gaps = 51/456 (11%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-------DLVS 54
           + G   +A  VF+ MP R +VS+N MISG+LRN  F  +   F +M +        D  +
Sbjct: 89  KCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKAT 148

Query: 55  WNVMLTGYVRNRRLGDARR--------LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF 106
              ML+G     RLG +          +F    ++++   NA+++ Y +     + R+VF
Sbjct: 149 LTTMLSG-CDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQGRKVF 207

Query: 107 YQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARK 166
            +M  +N ++W  +++    N   E++ RLF        +S N L   ++   M  +  +
Sbjct: 208 DEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLT--YLSSLMACSGLQ 265

Query: 167 LF---DKMH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
           +     K+H          D+   + ++  Y++ G +  A  +F+ +   D  + T ++ 
Sbjct: 266 VLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTVILV 325

Query: 216 GYVQNGMLDEARTFFDQMPQKN-EISYN---AMVAGYVQSNKMDMARELFEAMPSRNVSS 271
            + QNG  +EA   F +M     E+  N   A++  +     + + +++   +  +N   
Sbjct: 326 AFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCE 385

Query: 272 ----WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
                N ++  Y + GD++ +  +F  M Q++ VSW ++I+ +A+ G   +AL  + E++
Sbjct: 386 NPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYEEMR 445

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQI-------HGQVVKTGYETGCFVGNALLGMY 380
            +G +    TF   L  C+    +E G ++       HG +        C V      M 
Sbjct: 446 VEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHG-ISPRSEHYACVV-----DML 499

Query: 381 FKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARHG 415
            + G + EA    EG+ E   V+ W  ++   + HG
Sbjct: 500 GRAGHLNEAKKFIEGLPEHGGVLVWQALLGACSIHG 535



 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 11/125 (8%)

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKT--------GYETGCFVGNALLGMYFKCG 384
           LN +  +  L+ C     L LG  IH +++K               F+ N+LL MY KCG
Sbjct: 32  LNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCG 91

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT---IGVKPDEITMVG 441
               A +VF+ +  +D VSWNTMI+G+ R+G    +   F+ M     +  + D+ T+  
Sbjct: 92  EFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTT 151

Query: 442 VLSAC 446
           +LS C
Sbjct: 152 MLSGC 156


>Medtr5g018690.1 | PPR containing protein | HC |
           chr5:6968759-6971652 | 20130731
          Length = 663

 Score =  356 bits (914), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 313/576 (54%), Gaps = 18/576 (3%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           +++  V+ R L  A +LFD +PQ +   +N ++ GY+ +    ++  ++ +M   + I  
Sbjct: 74  LVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMV-CDGILP 132

Query: 118 NGLLAAYVHNGRIEEAC---------RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           N     +V      ++C         + F           N ++  +V   ++ +AR++F
Sbjct: 133 NQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVF 192

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLD 224
           D +  R +VSWN+MI+GY++ G   +A  +F +        DVFT   ++S   ++G  D
Sbjct: 193 DDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFD 252

Query: 225 EARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYG 280
             R     M     + + I  NA++  Y +   +  A+ +F+ M  ++V SW  MI  Y 
Sbjct: 253 LGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYA 312

Query: 281 QNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC 340
            +G I  A + F+ MP ++ VSW +II  + Q G Y EA+++F  +   G   N +T   
Sbjct: 313 NHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVA 372

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
            LS+C+ +  L LGKQ H  +          + NA++ MY KCG++  A DVF G+ EK+
Sbjct: 373 ILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKN 432

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY 460
            VSWN +I   A HG+GK+A+ +FE M+  GV PDEIT  G+LSACSH+GL+D G  YF 
Sbjct: 433 AVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFE 492

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT 520
            MN  + ++P  +HY CM+DLLGR G L EA  L++ MP +P    W ALLGA R +GN 
Sbjct: 493 IMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNL 552

Query: 521 ELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEV 580
            +G++  + + ++  +NSG+YVLLSN+Y+ S RW D  N+   +   G++K    S++E+
Sbjct: 553 AIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEI 612

Query: 581 QNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
               ++F V D  H     IY+ L +L   ++  GY
Sbjct: 613 DGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAGY 648



 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 185/409 (45%), Gaps = 66/409 (16%)

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           V++   ++S   Q  D+  A  LFDQ P  + F +  ++ GY  +             P 
Sbjct: 68  VLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSS-----------DPI 116

Query: 236 KNEISYNAMVAGYVQSNKMDMAREL-------------------FEAMPSRNVSSWNTMI 276
           K+ + Y  MV   +  N+  +   L                   F+     +    N ++
Sbjct: 117 KSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAIL 176

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y   G I  AR++FD + +R  VSW ++I+GY++ G  EEA+ MF E++  G   +  
Sbjct: 177 NIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVF 236

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
           T    LS        +LG+ +H  +V TG E    V NAL+ MY KCG++  A  VF+ +
Sbjct: 237 TLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQM 296

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESM--KTI------------------------ 430
            +KDVVSW  MI  YA HG    AL  F  M  K +                        
Sbjct: 297 LDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFY 356

Query: 431 -----GVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA 485
                GV  ++ T+V +LS+CSH G +  G +  +S   D ++T S+     +ID+  + 
Sbjct: 357 RMCDSGVMANDTTLVAILSSCSHMGDLALGKQA-HSYIFDNNITLSATLCNAIIDMYAKC 415

Query: 486 GRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
           G L+ A D+   MP E  A SW  ++GA  +HG    G++A EM  KM+
Sbjct: 416 GALQTAMDVFFGMP-EKNAVSWNVIIGALALHG---YGKEAIEMFEKMQ 460



 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 196/418 (46%), Gaps = 49/418 (11%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----H 111
           N +L  YV    +  ARR+FD + ++ +VSWN+M++GY++ G ++EA  +F +M      
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLE 232

Query: 112 KNAISWNGLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
            +  +  GLL+    +G  +        +  +  + + I  N LM  + K   L  A+ +
Sbjct: 233 PDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSV 292

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
           FD+M  +DVVSW  MI+ YA  G +  A   F+Q P ++V +W +++  +VQ G+  EA 
Sbjct: 293 FDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAV 352

Query: 228 TFFDQMPQK----NEISYNAMVAGYVQSNKMDMARE----LFEAMPSRNVSSWNTMITGY 279
             F +M       N+ +  A+++       + + ++    +F+   + + +  N +I  Y
Sbjct: 353 DLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMY 412

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + G +  A  +F  MP+++ VSW  II   A  G+ +EA+ MF +++  G   +  TF+
Sbjct: 413 AKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFT 472

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             LS C+           H  +V TG              YF      E  ++  GI   
Sbjct: 473 GLLSACS-----------HSGLVDTGQH------------YF------EIMNLTFGISP- 502

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           DV  +  M+    R G   +A+ + + M    VKPD +    +L AC   G +  G +
Sbjct: 503 DVEHYACMVDLLGRRGLLGEAISLIKKMP---VKPDVVVWSALLGACRTYGNLAIGKQ 557



 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 186/402 (46%), Gaps = 54/402 (13%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----Q 80
           NA+++ Y+     + AR +FD + +R LVSWN M+ GY +  R  +A  +F  M     +
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLE 232

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRL 136
            DV +   +LS   ++G  D  R V   M       ++I  N L+  Y   G ++ A  +
Sbjct: 233 PDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSV 292

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
           FD   D +++SW C++  +    ++  A + F++M  ++VVSWN++I  + Q+G  ++A 
Sbjct: 293 FDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAV 352

Query: 197 NLF----DQSPHQDVFTWTAMVSGYVQNGML---DEARTF-FDQMPQKNEISYNAMVAGY 248
           +LF    D     +  T  A++S     G L    +A ++ FD     +    NA++  Y
Sbjct: 353 DLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMY 412

Query: 249 VQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWA 304
            +   +  A ++F  MP +N  SWN +I     +G   +A ++F+ M       D +++ 
Sbjct: 413 AKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFT 472

Query: 305 AIISGYAQTG------HYEEALNMFIEIKRD-----------------GESL-------- 333
            ++S  + +G      HY E +N+   I  D                 GE++        
Sbjct: 473 GLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPV 532

Query: 334 --NRSTFSCALSTCADIAALELGKQIHGQVVKTG-YETGCFV 372
             +   +S  L  C     L +GKQI  Q+++ G Y +G +V
Sbjct: 533 KPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYV 574



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 161/387 (41%), Gaps = 64/387 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR------------- 50
           G   SA RVF+ +  R+ VS+N+MI+GY +  R   A  +F +M +              
Sbjct: 183 GLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLL 242

Query: 51  --------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
                                     D +  N ++  Y +   L  A+ +FD M  KDVV
Sbjct: 243 SVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVV 302

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD-- 142
           SW  M++ YA +G  D A E F QMP KN +SWN ++  +V  G   EA  LF    D  
Sbjct: 303 SWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG 362

Query: 143 --------WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
                     ++S    MG     K   A   +FD          N +I  YA+ G +  
Sbjct: 363 VMANDTTLVAILSSCSHMGDLALGKQ--AHSYIFDNNITLSATLCNAIIDMYAKCGALQT 420

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQ 250
           A ++F   P ++  +W  ++     +G   EA   F++M       +EI++  +++    
Sbjct: 421 AMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSH 480

Query: 251 SNKMDMARELFEAM-----PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWA 304
           S  +D  +  FE M      S +V  +  M+   G+ G + +A  L   MP + D V W+
Sbjct: 481 SGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWS 540

Query: 305 AIISG---YAQTGHYEEALNMFIEIKR 328
           A++     Y      ++ +   +E+ R
Sbjct: 541 ALLGACRTYGNLAIGKQIMKQLLELGR 567



 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 118/249 (47%), Gaps = 18/249 (7%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGY 62
           +G  D AL  FN MP ++ VS+N++I  +++   ++ A DLF +M    +++ +  L   
Sbjct: 314 HGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAI 373

Query: 63  VRN-RRLGDA-------RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           + +   +GD          +FD+         NA++  YA+ G    A +VF+ MP KNA
Sbjct: 374 LSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNA 433

Query: 115 ISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
           +SWN ++ A   +G  +EA  +F+    S    + I++  L+       ++   +  F+ 
Sbjct: 434 VSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEI 493

Query: 171 MHVR-----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-DVFTWTAMVSGYVQNGMLD 224
           M++      DV  +  M+    + G + +A +L  + P + DV  W+A++      G L 
Sbjct: 494 MNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLA 553

Query: 225 EARTFFDQM 233
             +    Q+
Sbjct: 554 IGKQIMKQL 562


>Medtr4g119420.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:49468862-49466962 | 20130731
          Length = 589

 Score =  356 bits (914), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 305/546 (55%), Gaps = 26/546 (4%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D  + N +I+ Y +   +  A  LFD+  H +V +W+ +++GYV+ G  + A   F QM 
Sbjct: 57  DTFTTNNLINSYLKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQPNIALCLFHQMQ 116

Query: 235 ----QKNEISYNAMVAGYVQSNKMDMARE---LFEAMPSR-NVSSWNTMITGYGQNGDIA 286
                 NE +++ ++        ++  R    L E    R ++   +++I  YG+   + 
Sbjct: 117 GTLVMPNEFTFSTLINACSILANLETGRRIHALVEVFGYRSDLVVCSSLIDMYGKCNRVD 176

Query: 287 QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR-DGESLNRSTFSCALSTC 345
           +A+ +FD M  R+ VSW ++I+ Y+Q G    AL +F E         N      A++ C
Sbjct: 177 EAQMIFDFMWVRNVVSWTSMITTYSQNGQGHLALQLFREFNHIRMNKPNHFMLCSAVTAC 236

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
           A +  L  GK  HG V++ G++    V +AL+ MY KCG +  ++ VF  I    VV + 
Sbjct: 237 ASLGRLGSGKITHGVVIRLGHDASDVVASALVDMYAKCGCVTYSDKVFRRIVNPSVVPYT 296

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD 465
           +MI G A++G G  +L +F+ M    +KP+ IT VGVL               F SMN+ 
Sbjct: 297 SMIVGAAKYGLGTLSLRLFQEMVDRRIKPNSITFVGVL-------------HLFNSMNEK 343

Query: 466 YSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF--EPPAASWGALLGASRIHGNTELG 523
           Y V P ++HYTC++D+LGR GR++EA  L +++    E  A  WG LL ASR+HG  ++ 
Sbjct: 344 YGVMPDARHYTCIVDMLGRVGRIDEAYQLAQSVQVGSEDDALLWGTLLSASRLHGRVDIA 403

Query: 524 EKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNK 583
            +A+  V +     +  YV LSN YA +G W +A N+RS M+  GV K  G SW+E+++ 
Sbjct: 404 IEASNRVIESNQQVAAAYVTLSNTYALAGDWENAHNLRSEMKRTGVYKEPGSSWIEIKDS 463

Query: 584 IHKFTVGDCFH-PEKDRIYAFLEELDLKMRREGYVS-STKLVLHDVEEEEKEHMLKYHSE 641
            + F  GD     +K  + + L EL+ +M+  G+V  +T LV  DVEEE KE ++  HSE
Sbjct: 464 TYLFHAGDLSKCSQKRELLSLLRELEGRMKERGHVGVTTGLVFVDVEEEAKEEIVSLHSE 523

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           KLA+AFG+L  P G  I ++KNLR+C DCH A K IS IV R  ++RD +RFHHF  G C
Sbjct: 524 KLALAFGLLNTPKGITIIIMKNLRMCRDCHEAFKLISDIVEREFVVRDVNRFHHFKNGSC 583

Query: 702 SCGDYW 707
           +CGD+W
Sbjct: 584 TCGDFW 589



 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 142/288 (49%), Gaps = 10/288 (3%)

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
           S +  + N +I  Y +   I  A KLFD M   + VSW+ +++GY + G    AL +F +
Sbjct: 55  SNDTFTTNNLINSYLKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQPNIALCLFHQ 114

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           ++      N  TFS  ++ C+ +A LE G++IH  V   GY +   V ++L+ MY KC  
Sbjct: 115 MQGTLVMPNEFTFSTLINACSILANLETGRRIHALVEVFGYRSDLVVCSSLIDMYGKCNR 174

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV-KPDEITMVGVLS 444
           + EA  +F+ +  ++VVSW +MI  Y+++G G  AL +F     I + KP+   +   ++
Sbjct: 175 VDEAQMIFDFMWVRNVVSWTSMITTYSQNGQGHLALQLFREFNHIRMNKPNHFMLCSAVT 234

Query: 445 ACSHAGLIDRGT---EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           AC+  G +  G         +  D S   +S     ++D+  + G +  +  + R +   
Sbjct: 235 ACASLGRLGSGKITHGVVIRLGHDASDVVAS----ALVDMYAKCGCVTYSDKVFRRI-VN 289

Query: 502 PPAASWGALLGASRIHGNTELGEKA-AEMVFKMEPHNSGMYVLLSNLY 548
           P    + +++  +  +G   L  +   EMV +    NS  +V + +L+
Sbjct: 290 PSVVPYTSMIVGAAKYGLGTLSLRLFQEMVDRRIKPNSITFVGVLHLF 337



 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 195/457 (42%), Gaps = 60/457 (13%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGY 62
           N H       FN +P  +    N + SG        L+ D F         + N ++  Y
Sbjct: 26  NAHNIGKFHTFNHLPSATPTHANVVKSG--------LSNDTF---------TTNNLINSY 68

Query: 63  VRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ------MPHK---- 112
           ++  ++  A +LFD M   +VVSW+ +++GY + G  + A  +F+Q      MP++    
Sbjct: 69  LKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQPNIALCLFHQMQGTLVMPNEFTFS 128

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
             I+   +LA      RI     +F  +SD  L+  + L+  + K   +  A+ +FD M 
Sbjct: 129 TLINACSILANLETGRRIHALVEVFGYRSD--LVVCSSLIDMYGKCNRVDEAQMIFDFMW 186

Query: 173 VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH-----QDVFTWTAMVSGYVQNGMLDEAR 227
           VR+VVSW +MI+ Y+Q+G    A  LF +  H      + F   + V+     G L   +
Sbjct: 187 VRNVVSWTSMITTYSQNGQGHLALQLFREFNHIRMNKPNHFMLCSAVTACASLGRLGSGK 246

Query: 228 TFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNG 283
                + +     +++  +A+V  Y +   +  + ++F  + + +V  + +MI G  + G
Sbjct: 247 ITHGVVIRLGHDASDVVASALVDMYAKCGCVTYSDKVFRRIVNPSVVPYTSMIVGAAKYG 306

Query: 284 DIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
               + +LF  M  R    + +++  ++       H   ++N     ++ G   +   ++
Sbjct: 307 LGTLSLRLFQEMVDRRIKPNSITFVGVL-------HLFNSMN-----EKYGVMPDARHYT 354

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG----SIGEANDVFEG 395
           C +     +  ++   Q+  Q V+ G E    +   LL      G    +I  +N V E 
Sbjct: 355 CIVDMLGRVGRIDEAYQL-AQSVQVGSEDDALLWGTLLSASRLHGRVDIAIEASNRVIES 413

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
             ++   ++ T+   YA  G  + A  +   MK  GV
Sbjct: 414 -NQQVAAAYVTLSNTYALAGDWENAHNLRSEMKRTGV 449



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 358 HGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFG 417
           H  VVK+G     F  N L+  Y K   I  A+ +F+ +   +VVSW+ ++AGY R G  
Sbjct: 46  HANVVKSGLSNDTFTTNNLINSYLKLLKIDHAHKLFDEMSHPNVVSWSLLMAGYVRQGQP 105

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC 477
             AL +F  M+   V P+E T   +++ACS    ++ G    +++ + +         + 
Sbjct: 106 NIALCLFHQMQGTLVMPNEFTFSTLINACSILANLETGRR-IHALVEVFGYRSDLVVCSS 164

Query: 478 MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
           +ID+ G+  R++EAQ ++ +  +     SW +++     +G   L 
Sbjct: 165 LIDMYGKCNRVDEAQ-MIFDFMWVRNVVSWTSMITTYSQNGQGHLA 209


>Medtr0493s0010.1 | pentatricopeptide (PPR) repeat protein | HC |
           scaffold0493:2001-4149 | 20130731
          Length = 611

 Score =  354 bits (909), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 265/474 (55%), Gaps = 22/474 (4%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNG-------DIAQARKLFDM 294
             +++ Y +    + AR++F+ M   NV +WN ++T   + G              +F  
Sbjct: 152 TTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCE 211

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
           M  RD  SW+ +I G+A++G + +A   F E+ RD    +  + +  LS CA   A E G
Sbjct: 212 MKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFG 271

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
           K +HG + K G+     V NAL+  Y KCG++  A  VF                  A H
Sbjct: 272 KILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN--------------ISLAMH 317

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKH 474
           G   +A+ VF  M+  GV+PD +T + +L ACSH+GL+++G   F  M   Y + P+ +H
Sbjct: 318 GRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEH 377

Query: 475 YTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
           Y CM+DL GRA RL++A + +R MP  P    W  LLGA  IHGN EL E     + +M+
Sbjct: 378 YGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMD 437

Query: 535 PHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFH 594
           P+NSG +VLLSN+YA +G+W D   +R  M +  ++K+ G+S +E+    + F  G+  +
Sbjct: 438 PNNSGDHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPN 497

Query: 595 PEKDRIYAFLEELDLKMR-REGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIP 653
                 +  L E+ L++R  EGY    + VLHDVEEEEKE  +  HSEKLA AFGI  +P
Sbjct: 498 EVTKEAHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLP 557

Query: 654 AGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            GR +R++KNLRVC DCH  +K ISK+    II+RD  RFH F  G CSC DYW
Sbjct: 558 KGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611



 Score = 73.2 bits (178), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 40/206 (19%)

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS-TFSCALSTCA-D 347
           +LF   P  D   +  +I   + +     +L  FI++ R    L  S +F+  L   A D
Sbjct: 66  RLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIAND 125

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN-- 405
             +   G Q+H    + G++   FVG  L+ MY +CG    A  VF+ + + +VV+WN  
Sbjct: 126 GCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAV 185

Query: 406 ------------------------------------TMIAGYARHGFGKQALMVFESMKT 429
                                               TMI G+A+ G    A   F+ +  
Sbjct: 186 VTACFRCGMWRVLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLR 245

Query: 430 IGVKPDEITMVGVLSACSHAGLIDRG 455
              +P E+++ GVLSAC+ AG  + G
Sbjct: 246 DRNRPSEVSLTGVLSACAQAGAFEFG 271



 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 163/427 (38%), Gaps = 89/427 (20%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-----DLVSWNVMLTGYV 63
           +LR+F+  P   +  YN +I     ++    +   F ++ +      D  S+   L G  
Sbjct: 64  SLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIA 123

Query: 64  RN---RRLGDA------RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
            +   +R G        R  FD      +     ++S YA+ G  + AR+VF +M   N 
Sbjct: 124 NDGCSKRQGIQLHSHAFRHGFDD----HIFVGTTLISMYAECGCYEYARKVFDEMSQPNV 179

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           ++WN ++ A    G                   W  L   F  R++      +F +M +R
Sbjct: 180 VAWNAVVTACFRCGM------------------WRVLGVSFGWREV------VFCEMKMR 215

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D  SW+TMI G+A+ G               D F       G+ +  + D  R       
Sbjct: 216 DDASWSTMIVGFAKSGSF------------HDAF-------GFFKELLRDRNR------- 249

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN----VSSWNTMITGYGQNGDIAQARK 290
             +E+S   +++   Q+   +  + L   M        VS  N +I  Y + G++  A+ 
Sbjct: 250 -PSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKL 308

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +F++                A  G  +EA+ +F E++  G   +  TF   L  C+    
Sbjct: 309 VFNI--------------SLAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGL 354

Query: 351 LELGKQIHGQVVK-TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMI 408
           +E G  +  ++    G E        ++ +Y +   + +A +    +    +V+ W T++
Sbjct: 355 VEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLL 414

Query: 409 AGYARHG 415
              + HG
Sbjct: 415 GACSIHG 421



 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 126/301 (41%), Gaps = 43/301 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN---RRLGDA----RRLFDS 77
             +IS Y     +  AR +FD+M Q ++V+WN ++T   R    R LG +      +F  
Sbjct: 152 TTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWRVLGVSFGWREVVFCE 211

Query: 78  MPQKDVVSWNAMLSGYAQNGYADEA----REVFYQMPHKNAISWNGLLAAYVHNGRIEEA 133
           M  +D  SW+ M+ G+A++G   +A    +E+       + +S  G+L+A    G  E  
Sbjct: 212 MKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFG 271

Query: 134 CRL--FDSKSDWELISW--NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
             L  F  K+ +  I    N L+  + K   +  A+ +F+                 A  
Sbjct: 272 KILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFN--------------ISLAMH 317

Query: 190 GDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS----- 240
           G   +A  +F +     V     T+ +++     +G++++    F +M     I      
Sbjct: 318 GRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEH 377

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPS-RNVSSWNTMITGYGQNGDIAQAR----KLFDMM 295
           Y  MV  Y ++ ++  A E    MP   NV  W T++     +G+I  A     +L +M 
Sbjct: 378 YGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMD 437

Query: 296 P 296
           P
Sbjct: 438 P 438


>Medtr1g040585.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:15028593-15026470 | 20130731
          Length = 571

 Score =  354 bits (909), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/525 (37%), Positives = 292/525 (55%), Gaps = 25/525 (4%)

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPH 204
           N L+  + K   +  A K++++M  +DVV+WN M++GY+Q+G    A +LF    ++   
Sbjct: 46  NALVDMYAKCGKMEDASKVYERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREERIE 105

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMAREL 260
            DV TW++++SGY Q G   EA   F QM     + N ++  ++++G      +   +E 
Sbjct: 106 LDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCSCRPNVVTLMSLLSGCASVGALLHGKET 165

Query: 261 ------FEAMPSRN-----VSSWNTMITGYGQNGDIAQARKLFD-MMPQ-RDCVSWAAII 307
                 F      N     ++  N +I  Y +   +  AR +FD + P+ RD V+W  +I
Sbjct: 166 HCYSIKFILKGEHNDDNDDLAGINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMI 225

Query: 308 SGYAQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
            GYAQ G    AL +F E+ +    +  N  T SC L  CA +AAL  GKQIH  V++  
Sbjct: 226 GGYAQYGDANHALQLFSEMFKFDNCIVPNDFTISCVLMACARLAALRFGKQIHAYVLRRS 285

Query: 366 Y--ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV 423
                  FV N L+ MY K G +  A  VF+ + +++ +SW +++ GY  HG  + A  V
Sbjct: 286 RIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRV 345

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
           F+ M+   +  D IT + VL ACSH+G++DRG + FY M+KD+ V P  +HY CM DL G
Sbjct: 346 FDEMRKEALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFG 405

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVL 543
           RAGRL EA  L+ +M  EP    W ALL A R H N EL E AA+ + +++  N G Y L
Sbjct: 406 RAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNVELAEFAAKKLLELKADNDGTYTL 465

Query: 544 LSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAF 603
           LSN+YA + RW D   +R  M+  G++K  G+SWV+ +  +  F VGD  H +  +IY  
Sbjct: 466 LSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVQGRKGMETFYVGDRTHSQSQKIYET 525

Query: 604 LEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFG 648
           L +L  +++  GYV  T   LHDV++EEK   L  HSEKLA+A+ 
Sbjct: 526 LADLIQRIKAIGYVPQTNFALHDVDDEEKGDQLLEHSEKLALAYA 570



 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 175/355 (49%), Gaps = 37/355 (10%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           V N +P       NA++  Y +  +   A  ++++M  +D+V+WN M+TGY +N R  DA
Sbjct: 33  VVNILPVSGFFVGNALVDMYAKCGKMEDASKVYERMRFKDVVTWNAMVTGYSQNGRFEDA 92

Query: 72  RRLFDSMPQK----DVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAA 123
             LF  M ++    DVV+W++++SGYAQ G+  EA +VF QM       N ++   LL+ 
Sbjct: 93  LSLFGKMREERIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCSCRPNVVTLMSLLSG 152

Query: 124 YVHNGRI----EEACRLFD-------SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM- 171
               G +    E  C           +  + +L   N L+  + K K L  AR +FD++ 
Sbjct: 153 CASVGALLHGKETHCYSIKFILKGEHNDDNDDLAGINALIDMYAKCKSLEVARAMFDEIC 212

Query: 172 -HVRDVVSWNTMISGYAQDGDMSQAKNL------FDQSPHQDVFTWTAMVSGYVQNGMLD 224
              RDVV+W  MI GYAQ GD + A  L      FD     + FT + ++    +   L 
Sbjct: 213 PKDRDVVTWTVMIGGYAQYGDANHALQLFSEMFKFDNCIVPNDFTISCVLMACARLAALR 272

Query: 225 EARTFFDQMPQKNEIS------YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
             +     + +++ I        N ++  Y +S  +D A+ +F++M  RN  SW +++TG
Sbjct: 273 FGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAISWTSLLTG 332

Query: 279 YGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           YG +G    A ++FD M +     D +++  ++   + +G  +  +++F  + +D
Sbjct: 333 YGMHGCSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKD 387



 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 170/334 (50%), Gaps = 24/334 (7%)

Query: 211 TAMVSGYVQN-------GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEA 263
           +++V+ Y+Q        G+L +     + +P       NA+V  Y +  KM+ A +++E 
Sbjct: 8   SSIVAAYLQGLEMTVGYGILPDTVGVVNILPVSGFFVGNALVDMYAKCGKMEDASKVYER 67

Query: 264 MPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEA 319
           M  ++V +WN M+TGY QNG    A  LF  M +     D V+W+++ISGYAQ G   EA
Sbjct: 68  MRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREERIELDVVTWSSVISGYAQRGFGCEA 127

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT------GYETGCFVG 373
           +++F ++       N  T    LS CA + AL  GK+ H   +K         +     G
Sbjct: 128 MDVFRQMCGCSCRPNVVTLMSLLSGCASVGALLHGKETHCYSIKFILKGEHNDDNDDLAG 187

Query: 374 -NALLGMYFKCGSIGEANDVFEGI--EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
            NAL+ MY KC S+  A  +F+ I  +++DVV+W  MI GYA++G    AL +F  M   
Sbjct: 188 INALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHALQLFSEMFKF 247

Query: 431 G--VKPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGR 487
              + P++ T+  VL AC+    +  G + + Y + +    +       C+ID+  ++G 
Sbjct: 248 DNCIVPNDFTISCVLMACARLAALRFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGD 307

Query: 488 LEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           ++ AQ +  +M  +  A SW +LL    +HG +E
Sbjct: 308 VDTAQVVFDSMS-KRNAISWTSLLTGYGMHGCSE 340



 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/438 (21%), Positives = 189/438 (43%), Gaps = 76/438 (17%)

Query: 68  LGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHN 127
           L D   + + +P       NA++  YA+ G  ++A +V+ +M  K+ ++WN ++  Y  N
Sbjct: 27  LPDTVGVVNILPVSGFFVGNALVDMYAKCGKMEDASKVYERMRFKDVVTWNAMVTGYSQN 86

Query: 128 GRIEEACRLF----DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM------------ 171
           GR E+A  LF    + + + ++++W+ ++ G+ +R     A  +F +M            
Sbjct: 87  GRFEDALSLFGKMREERIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCSCRPNVVTL 146

Query: 172 --------------HVR--------------------DVVSWNTMISGYAQDGDMSQAKN 197
                         H +                    D+   N +I  YA+   +  A+ 
Sbjct: 147 MSLLSGCASVGALLHGKETHCYSIKFILKGEHNDDNDDLAGINALIDMYAKCKSLEVARA 206

Query: 198 LFDQ--SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ------KNEISYNAMVAGYV 249
           +FD+     +DV TWT M+ GY Q G  + A   F +M +       N+ + + ++    
Sbjct: 207 MFDEICPKDRDVVTWTVMIGGYAQYGDANHALQLFSEMFKFDNCIVPNDFTISCVLMACA 266

Query: 250 QSNKMDMARELFEAMPSRN------VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSW 303
           +   +   +++   +  R+      +   N +I  Y ++GD+  A+ +FD M +R+ +SW
Sbjct: 267 RLAALRFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAISW 326

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ--- 360
            ++++GY   G  E+A  +F E++++   L+  TF   L  C+    ++ G  +  +   
Sbjct: 327 TSLLTGYGMHGCSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMVDRGIDLFYRMSK 386

Query: 361 --VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFG 417
             VV  G E    + +    ++ + G + EA  +   +  E   V W  +++    H   
Sbjct: 387 DFVVDPGVEHYACMAD----LFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTH--S 440

Query: 418 KQALMVFESMKTIGVKPD 435
              L  F + K + +K D
Sbjct: 441 NVELAEFAAKKLLELKAD 458


>Medtr1g040565.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:15020896-15019352 | 20130731
          Length = 514

 Score =  353 bits (906), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 286/510 (56%), Gaps = 25/510 (4%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQ 219
           A K++++M  +DVV+WN M++GY+Q+G    A +LF    ++    DV TW++++SGY Q
Sbjct: 4   ASKVYERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREERIELDVVTWSSVISGYAQ 63

Query: 220 NGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMAREL------FEAMPSRN- 268
            G   EA   F QM     + N ++  ++++G      +   +E       F      N 
Sbjct: 64  RGFGCEAMDVFRQMCGCSCRPNVVTLMSLLSGCASVGALLHGKETHCYSIKFILKGEHND 123

Query: 269 ----VSSWNTMITGYGQNGDIAQARKLFD-MMPQ-RDCVSWAAIISGYAQTGHYEEALNM 322
               ++  N +I  Y +   +  AR +FD + P+ RD V+W  +I GYAQ G    AL +
Sbjct: 124 DNDDLAGINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHALQL 183

Query: 323 FIEIKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQVVKTGY--ETGCFVGNALLG 378
           F E+ +    +  N  T SC L  CA +AAL  GKQIH  V++         FV N L+ 
Sbjct: 184 FSEMFKFDNCIVPNDFTISCVLMACARLAALRFGKQIHAYVLRRSRIDSDVLFVANCLID 243

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY K G +  A  VF+ + +++ +SW +++ GY  HG  + A  VF+ M+   +  D IT
Sbjct: 244 MYSKSGDVDTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRVFDEMRKEALVLDGIT 303

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            + VL ACSH+G++DRG + FY M+KD+ V P  +HY CM DL GRAGRL EA  L+ +M
Sbjct: 304 FLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDM 363

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
             EP    W ALL A R H N EL E AA+ + +++  N G Y LLSN+YA + RW D  
Sbjct: 364 SMEPTPVVWIALLSACRTHSNVELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVA 423

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            +R  M+  G++K  G+SWV+ +  +  F VGD  H +  +IY  L +L  +++  GYV 
Sbjct: 424 RIRYLMKRTGIKKRPGWSWVQGRKGMETFYVGDRTHSQSQKIYETLADLIQRIKAIGYVP 483

Query: 619 STKLVLHDVEEEEKEHMLKYHSEKLAVAFG 648
            T   LHDV++EEK   L  HSEKLA+A+ 
Sbjct: 484 QTNFALHDVDDEEKGDQLLEHSEKLALAYA 513



 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 37/327 (11%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK----DVVSWNAMLSGYAQ 95
           A  ++++M  +D+V+WN M+TGY +N R  DA  LF  M ++    DVV+W++++SGYAQ
Sbjct: 4   ASKVYERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREERIELDVVTWSSVISGYAQ 63

Query: 96  NGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRI----EEACRLFD-------SK 140
            G+  EA +VF QM       N ++   LL+     G +    E  C           + 
Sbjct: 64  RGFGCEAMDVFRQMCGCSCRPNVVTLMSLLSGCASVGALLHGKETHCYSIKFILKGEHND 123

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKM--HVRDVVSWNTMISGYAQDGDMSQAKNL 198
            + +L   N L+  + K K L  AR +FD++    RDVV+W  MI GYAQ GD + A  L
Sbjct: 124 DNDDLAGINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHALQL 183

Query: 199 ------FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS------YNAMVA 246
                 FD     + FT + ++    +   L   +     + +++ I        N ++ 
Sbjct: 184 FSEMFKFDNCIVPNDFTISCVLMACARLAALRFGKQIHAYVLRRSRIDSDVLFVANCLID 243

Query: 247 GYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVS 302
            Y +S  +D A+ +F++M  RN  SW +++TGYG +G    A ++FD M +     D ++
Sbjct: 244 MYSKSGDVDTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRVFDEMRKEALVLDGIT 303

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRD 329
           +  ++   + +G  +  +++F  + +D
Sbjct: 304 FLVVLYACSHSGMVDRGIDLFYRMSKD 330



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 96/252 (38%), Gaps = 65/252 (25%)

Query: 25  NAMISGYLRNARFSLARDLFDKM--PQRDLVSWNVMLTGYVRNRRLGDARRLFDSM---- 78
           NA+I  Y +     +AR +FD++    RD+V+W VM+ GY +      A +LF  M    
Sbjct: 132 NALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQYGDANHALQLFSEMFKFD 191

Query: 79  ----PQKDVVSW-----------------------------------NAMLSGYAQNGYA 99
               P    +S                                    N ++  Y+++G  
Sbjct: 192 NCIVPNDFTISCVLMACARLAALRFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDV 251

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL---------ISWNC 150
           D A+ VF  M  +NAISW  LL  Y  +G  E+A R+FD      L         + + C
Sbjct: 252 DTAQVVFDSMSKRNAISWTSLLTGYGMHGCSEDAFRVFDEMRKEALVLDGITFLVVLYAC 311

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVS-----WNTMISGYAQDGDMSQAKNLF-DQSPH 204
              G V R +      LF +M    VV      +  M   + + G + +A  L  D S  
Sbjct: 312 SHSGMVDRGI-----DLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSME 366

Query: 205 QDVFTWTAMVSG 216
                W A++S 
Sbjct: 367 PTPVVWIALLSA 378


>Medtr8g098250.1 | PPR containing plant-like protein | HC |
           chr8:40970486-40967324 | 20130731
          Length = 998

 Score =  350 bits (899), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 214/658 (32%), Positives = 339/658 (51%), Gaps = 89/658 (13%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +D+     ++  Y ++  + DAR LFD +  K   +W  +++GY++ G +  + ++F QM
Sbjct: 174 QDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQM 233

Query: 110 ------PHKNAISW---NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKM 160
                 P K  +S      L+  ++  G+ +  C +  S    ++   N  +  + K   
Sbjct: 234 KEGHVCPDKYVLSSVLSACLMLKFLEGGK-QIHCYVLRSGIVMDVSMVNGFIDFYFKCHK 292

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSG 216
           +   RKLFD+M  ++VVSW T+I+G  Q+     A +LF +      + D F  T++++ 
Sbjct: 293 VQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNS 352

Query: 217 --------------------------YVQNGMLD---------EARTFFDQMPQKNEISY 241
                                     +V+NG++D         +AR  F+ M   + +SY
Sbjct: 353 CGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSY 412

Query: 242 NAMVAGYVQSNKMDMARELFEAM------PSRNV-----------------SSWNTMITG 278
           NAM+ GY + +K+  A +LF  M      P+  +                 +  + +I  
Sbjct: 413 NAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIK 472

Query: 279 YGQNGD----------------IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           YG + D                +  AR +F+ +  +D V W A+ SGY Q    EE+L +
Sbjct: 473 YGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKL 532

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           +  ++      N  TF+  ++  ++IA+L  G+Q H QV+K G++   FV N L+ MY K
Sbjct: 533 YKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAK 592

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
            GSI EA+  F     KD   WN+MIA YA+HG  ++AL VFE M   G+KP+ +T VGV
Sbjct: 593 SGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGV 652

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEP 502
           LSACSH GL+D G ++F SM++ + + P  +HY CM+ LLGRAG+L EA++ +  MP + 
Sbjct: 653 LSACSHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQ 711

Query: 503 PAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRS 562
            A  W +LL A R+ GN ELG  AAEM     P +SG YVLLSN++A+ G W +   +R 
Sbjct: 712 AAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLRE 771

Query: 563 RMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 620
           +M   GV K  G SW+EV N+IHKF   D  H +   I   L+ L L+++  GY+++T
Sbjct: 772 KMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIKGFGYMANT 829



 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 215/472 (45%), Gaps = 71/472 (15%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           + D+   N +L  Y +   +  A +LFD+M  K++V+W++M+S Y  + +  EA  +F Q
Sbjct: 71  KHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQ 130

Query: 109 -MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFV----------- 156
            M   N      +LA+ V       AC  F   +    I    + GG+V           
Sbjct: 131 FMRSCNEKPNEYILASVV------RACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLID 184

Query: 157 ---KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH----QDVFT 209
              K   +  AR LFD + V+   +W T+I+GY++ G    +  LFDQ        D + 
Sbjct: 185 FYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYV 244

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV----QSNKMDMARELFEAMP 265
            ++++S  +    L+  +     + +   +   +MV G++    + +K+ + R+LF+ M 
Sbjct: 245 LSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMV 304

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
            +NV SW T+I G  QN                                 + +AL++F+E
Sbjct: 305 DKNVVSWTTVIAGCMQN-------------------------------SFHRDALDLFVE 333

Query: 326 IKRDGESLNRSTFSC--ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
           + R G   N   F C   L++C  + ALE G+Q+H   +K   +   FV N L+ MY KC
Sbjct: 334 MARMG--WNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKC 391

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE---ITMV 440
            S+ +A  VF  +   D+VS+N MI GY+R     +AL +F  M+     P     ++++
Sbjct: 392 DSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL 451

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           GV ++  H  L ++     + +   Y V+      + +ID+  +  R+ +A+
Sbjct: 452 GVSASLYHLELSNQ----IHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDAR 499



 Score =  147 bits (370), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 195/428 (45%), Gaps = 47/428 (10%)

Query: 152 MGGFVKRKMLGAARKLFDKM-----HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
           +   ++   +   +K+  K+     H  D+   NT++  Y++   ++ A  LFD   H++
Sbjct: 45  LANLLQSPHIPCCKKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKN 104

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQM-----PQKNEISYNAMVAGYVQSNKMDMARELF 261
           + TW++MVS Y  +    EA   F Q       + NE    ++V    Q   ++ A ++ 
Sbjct: 105 LVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIH 164

Query: 262 EAMPS----RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE 317
             +      ++V    ++I  Y ++  I  AR LFD +  +   +W  II+GY++ G  +
Sbjct: 165 GLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQ 224

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALL 377
            +L +F ++K      ++   S  LS C  +  LE GKQIH  V+++G      + N  +
Sbjct: 225 VSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFI 284

Query: 378 GMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEI 437
             YFKC  +     +F+ + +K+VVSW T+IAG  ++ F + AL +F  M  +G  PD  
Sbjct: 285 DFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAF 344

Query: 438 TMVGVLSACSHAGLIDRGTE-YFYSM-----NKDY-------------SVTPSSK----- 473
               VL++C     +++G + + Y++     N D+             S+T + K     
Sbjct: 345 GCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLM 404

Query: 474 ------HYTCMIDLLGRAGRLEEAQDLMRNMPF---EPPAASWGALLGASRIHGNTELGE 524
                  Y  MI+   R  +L EA DL R M      P    + +LLG S    + EL  
Sbjct: 405 AAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSN 464

Query: 525 KAAEMVFK 532
           +   ++ K
Sbjct: 465 QIHGLIIK 472


>Medtr7g076707.1 | PPR containing plant-like protein | HC |
           chr7:28928185-28925455 | 20130731
          Length = 569

 Score =  349 bits (895), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 303/552 (54%), Gaps = 17/552 (3%)

Query: 47  MPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF 106
           +P   +  +N++ +  +    +  A  LF  +P+  +  WN M+ G++Q     EA    
Sbjct: 6   LPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIR-N 64

Query: 107 YQMPHKNAISWNGLLAAYVHNG--RIEEA------CRLFDSKSDWELISWNCLMGGFVKR 158
           Y + +  A+  N L   ++     RI          R+     D +L   N L+ G+   
Sbjct: 65  YNLMYSQALFGNNLTYPFLLKACARISNVSCTTVHARVLKLGFDSDLFVSNALIHGYAGF 124

Query: 159 KMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMV 214
             LG ARK+FD+M  RD+VSWN++I GY +    S+   +F++    DV     T   +V
Sbjct: 125 CELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVV 184

Query: 215 SGYV---QNGMLDEARTFFDQMPQKNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVS 270
                  + G++D    + ++   + ++   N ++  Y + + +D+AR +F+ M  RN+ 
Sbjct: 185 LACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMV 244

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           SWN MI GYG+ G++  ARKLFD MP RD +SW ++IS Y+Q G + +A+ +F E+    
Sbjct: 245 SWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTK 304

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
              +  T +  LS CA I AL++G+ +H  + K       +VGNAL+ MY KCG++ +  
Sbjct: 305 VKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGL 364

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
            VFE + ++D VSW ++IAG A +G    AL +F  M   GV+P   T VGVL AC+HAG
Sbjct: 365 SVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAG 424

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           ++D+G EYF SM + Y +TP  KHY C++DLL R+G L  A + ++ MP +P    W  L
Sbjct: 425 VVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRIL 484

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           L AS++HGN  L E A + + + +P NSG Y+L SN YA S RW D   MR  M +  V 
Sbjct: 485 LSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVH 544

Query: 571 KVTGYSWVEVQN 582
           K +  S VE+ +
Sbjct: 545 KPSASSSVEIND 556



 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 179/415 (43%), Gaps = 61/415 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV- 83
           NA+I GY        AR +FD+M +RDLVSWN ++ GY R RR  +   +F+ M   DV 
Sbjct: 115 NALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVK 174

Query: 84  ------VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW-NGLLAAYVHNGRIEEACRL 136
                 V      +   + G  D   E   +   +  +   N L+  Y     ++ A R+
Sbjct: 175 GDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRV 234

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
           FD   D  ++SWN ++ G+ K   L AARKLFD M  RDV+SW +MIS Y+Q G   +A 
Sbjct: 235 FDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAV 294

Query: 197 NLFDQ----SPHQDVFTWTAMVSGYVQNGMLD--EARTFFDQMPQKNEISY--NAMVAGY 248
            LF +        D  T  +++S     G LD  EA   + +    N   Y  NA++  Y
Sbjct: 295 RLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMY 354

Query: 249 VQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
            +   ++    +FE M  R+  SW ++I G   NG                         
Sbjct: 355 CKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSA----------------------- 391

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG-------KQIHGQV 361
                   + ALN+F  + R+G      TF   L  CA    ++ G       ++++G  
Sbjct: 392 --------DSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLT 443

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHG 415
            +  +  GC V      +  + G++G A +  + +  + DVV W  +++    HG
Sbjct: 444 PEMKH-YGCVV-----DLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHG 492



 Score =  122 bits (307), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 158/324 (48%), Gaps = 31/324 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N +I  Y R +   LAR +FD+M  R++VSWN M+ GY +   L  AR+LFD MP +DV+
Sbjct: 216 NTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVI 275

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIE------EAC 134
           SW +M+S Y+Q G   +A  +F +M       + I+   +L+A  H G ++      E  
Sbjct: 276 SWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYI 335

Query: 135 RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
           R +D  +D  +   N L+  + K   +     +F++M  RD VSW ++I+G A +G    
Sbjct: 336 RKYDVNAD--IYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADS 393

Query: 195 AKNLFDQSPHQDVF----TWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV 245
           A NLF     + V     T+  ++      G++D+   +F+ M +   ++     Y  +V
Sbjct: 394 ALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVV 453

Query: 246 AGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQA----RKLFDMMPQRDC 300
               +S  +  A E  + MP   +V  W  +++    +G++  A    +KL +  P    
Sbjct: 454 DLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSN-- 511

Query: 301 VSWAAIISG--YAQTGHYEEALNM 322
            S   I+S   YA +  +E+ + M
Sbjct: 512 -SGNYILSSNTYAGSNRWEDVIKM 534



 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 160/339 (47%), Gaps = 16/339 (4%)

Query: 262 EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
           E +P+  +S +N + +      +I +A +LF  +P+     W  +I G++QT    EA+ 
Sbjct: 4   ELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIR 63

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
            +  +       N  T+   L  CA I+ +     +H +V+K G+++  FV NAL+  Y 
Sbjct: 64  NYNLMYSQALFGNNLTYPFLLKACARISNVSC-TTVHARVLKLGFDSDLFVSNALIHGYA 122

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
               +G A  VF+ + E+D+VSWN++I GY R     + L+VFE M+   VK D +TMV 
Sbjct: 123 GFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVK 182

Query: 442 VLSACS---HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           V+ AC+     G++D   EY      +  V   +     +ID+ GR   ++ A+ +   M
Sbjct: 183 VVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNT----LIDMYGRRSMVDLARRVFDRM 238

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM-YVLLSNLYAASGRWADA 557
             +    SW A++      GN      AA  +F   PH   + +  + + Y+ +G++  A
Sbjct: 239 R-DRNMVSWNAMIMGYGKAGNL----VAARKLFDDMPHRDVISWTSMISSYSQAGQFGKA 293

Query: 558 GNMRSRMRDVGVQ--KVTGYSWVEVQNKIHKFTVGDCFH 594
             +   M    V+  ++T  S +     I    VG+  H
Sbjct: 294 VRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVH 332



 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 163/375 (43%), Gaps = 59/375 (15%)

Query: 4   GHCDS--ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD---------- 51
           G C+   A +VF+ M  R  VS+N++I GY R  R+S    +F++M   D          
Sbjct: 123 GFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVK 182

Query: 52  -------LVSW----------------------NVMLTGYVRNRRLGDARRLFDSMPQKD 82
                  L  W                      N ++  Y R   +  ARR+FD M  ++
Sbjct: 183 VVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRN 242

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD---- 138
           +VSWNAM+ GY + G    AR++F  MPH++ ISW  ++++Y   G+  +A RLF     
Sbjct: 243 MVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMV 302

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVS----WNTMISGYAQDGDMSQ 194
           +K   + I+   ++        L     + + +   DV +     N +I  Y + G + +
Sbjct: 303 TKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEK 362

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV----Q 250
             ++F++   +D  +WT++++G   NG  D A   F  M ++     +    G +     
Sbjct: 363 GLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAH 422

Query: 251 SNKMDMARELFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWA 304
           +  +D   E FE+M      +  +  +  ++    ++G++ +A +    MP   D V W 
Sbjct: 423 AGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWR 482

Query: 305 AIISGYAQTGHYEEA 319
            ++S     G+   A
Sbjct: 483 ILLSASQVHGNLHLA 497


>Medtr7g417770.1 | PPR containing plant-like protein | HC |
           chr7:5697167-5694522 | 20130731
          Length = 881

 Score =  348 bits (894), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 349/682 (51%), Gaps = 64/682 (9%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           V+  A++  Y    +   A ++F +MP+R+ V W+ ++ GYVRN R  +  +L+  M  +
Sbjct: 206 VTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDE 265

Query: 82  ---------------------------------------DVVSWNAMLSGYAQNGYADEA 102
                                                  D +   A L  YA+     +A
Sbjct: 266 GMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325

Query: 103 REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS--KS--DWELISWN-------CL 151
           R+VF   P+    S N L+  Y    ++ EA  +F S  KS  D++ IS +        +
Sbjct: 326 RKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAI 385

Query: 152 MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
            G     ++ G A K        ++   NT++  YA+ G + +A  +FD    +D  +W 
Sbjct: 386 KGYLEGIQLHGLAVKCGLDF---NICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWN 442

Query: 212 AMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELF-EAMPS 266
           A+++ + QN  ++E    F  M     + ++ ++ ++V        ++   E+    + S
Sbjct: 443 AIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS 502

Query: 267 RNVSSW---NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
                W   + +I  Y + G + +A K+ + + +R  VSW +IISG++     E AL+ F
Sbjct: 503 GMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYF 562

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
             + + G   +  T++  L  CA++A +ELGKQIHGQ++K    +  ++ + ++ MY KC
Sbjct: 563 SRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVL 443
           G++ ++  +FE   ++D V+W+ MI  YA HG G+ A+ +FE M+   VKP+    + VL
Sbjct: 623 GNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVL 682

Query: 444 SACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
            AC+H G +D+G  YF  M   Y + P  +HY+CM+DLLGR+G++ EA +L+ +MPFE  
Sbjct: 683 RACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEAD 742

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSR 563
              W  LLG  R+ GN E+ EKAA  + +++P +S  YVLLSN+YA +G W +   +RS 
Sbjct: 743 DVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSF 802

Query: 564 MRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
           M++  ++K  G SW++V++++H F VGD  HP  + IY     L  +M+ +GYV      
Sbjct: 803 MKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYVPEIDGF 862

Query: 624 LHDVEEEEKEHMLKYHSEKLAV 645
           L D E +E++    Y   K+ V
Sbjct: 863 LLDEEVDEQD---SYEGHKITV 881



 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/601 (26%), Positives = 280/601 (46%), Gaps = 95/601 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N ++  Y +    + A ++FDKMPQRD++SWN M+ GY     +  A+ LFDSMP++DVV
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYV----HNGRIEEACRL 136
           SWN+MLS Y QNG+  ++ E+F +M       +  ++  +L A      +   ++  C  
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
                D ++++   L+  +   K L  A  +F +M  R+ V W+ +I+GY ++   ++  
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 197 NLF----------DQSPHQDVFTWTAMVSGY--------------------VQNGMLD-- 224
            L+           Q+     F   A +S +                    V    LD  
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMY 316

Query: 225 -------EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR---------- 267
                  +AR  F+  P     S+NA++ GY + +++  A E+F ++             
Sbjct: 317 AKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLS 376

Query: 268 -----------------------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
                                        N+   NT++  Y + G + +A  +FD M  +
Sbjct: 377 GALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK 436

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D VSW AII+ + Q  H EE L +F+ + R     +  TF   +  CA   AL  G ++H
Sbjct: 437 DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVH 496

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
           G+V+K+G     FVG+A++ MY KCG + EA  + E +EE+  VSWN++I+G++    G+
Sbjct: 497 GRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGE 556

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY--T 476
            AL  F  M  +GV PD  T   VL  C++   ++ G +    + K   +   S  Y  +
Sbjct: 557 NALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILK---LQLHSDVYIAS 613

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH 536
            ++D+  + G +++++ +    P +    +W A++ A   HG   LGE A ++  +M+  
Sbjct: 614 TIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHG---LGEDAIKLFEEMQLQ 669

Query: 537 N 537
           N
Sbjct: 670 N 670



 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 242/514 (47%), Gaps = 39/514 (7%)

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           NCL+  + K   L  A  +FDKM  RDV+SWNTMI GYA  G+M  A+ LFD  P +DV 
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAREL---- 260
           +W +M+S Y+QNG   ++   F +M     Q +  ++  ++          +  ++    
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 261 FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
            +     +V +   ++  Y     +  A  +F  MP+R+ V W+A+I+GY +   + E L
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            ++  +  +G  ++++TF+ A  +CA ++A ELG Q+H   +KT +     VG A L MY
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMY 316

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
            KC  + +A  VF         S N +I GYAR     +AL +F S++   +  DEI++ 
Sbjct: 317 AKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLS 376

Query: 441 GVLSACSHAGLIDRGTEYFYSMNK---DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           G L+ACS       G +      K   D+++  ++     ++D+  + G L EA  +  +
Sbjct: 377 GALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANT----ILDMYAKCGALMEACLIFDD 432

Query: 498 MPFEPPAASWGALLGASRIHGNTE--LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
           M  +  A SW A++ A   + + E  L    + +   MEP +   Y   S + A +G+ A
Sbjct: 433 MEIK-DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDD---YTFGSVVKACAGKKA 488

Query: 556 DAGNMRSRMRDV----GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKM 611
               M    R +    G+    G + +++  K            E ++I+  LEE     
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLV-------EAEKIHERLEE----- 536

Query: 612 RREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 645
                VS   ++     E++ E+ L Y S  L V
Sbjct: 537 --RTTVSWNSIISGFSSEKQGENALSYFSRMLQV 568



 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 43/214 (20%)

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           + TFS     C+++ A+  GKQ H Q+  TG+    FV N LL  Y KC ++  A +VF+
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 395 GIEEKDVVSWNTMIAGYA-------------------------------RHGFGKQALMV 423
            + ++DV+SWNTMI GYA                               ++GF ++++ +
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-----YFYSMNKDYSVTPSSKHYTCM 478
           F  M+ + ++ D  T   VL AC+  G+ D G           M  D  V       T +
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACT--GIEDYGLGLQVHCLAIQMGFDSDVVTG----TAL 211

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           +D+     +L+ A ++   MP E  +  W A++ 
Sbjct: 212 VDMYSTCKKLDHAFNIFCEMP-ERNSVCWSAVIA 244


>Medtr7g017700.1 | PPR containing plant-like protein | HC |
           chr7:5672185-5669078 | 20130731
          Length = 881

 Score =  348 bits (894), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 349/682 (51%), Gaps = 64/682 (9%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           V+  A++  Y    +   A ++F +MP+R+ V W+ ++ GYVRN R  +  +L+  M  +
Sbjct: 206 VTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDE 265

Query: 82  ---------------------------------------DVVSWNAMLSGYAQNGYADEA 102
                                                  D +   A L  YA+     +A
Sbjct: 266 GMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325

Query: 103 REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS--KS--DWELISWN-------CL 151
           R+VF   P+    S N L+  Y    ++ EA  +F S  KS  D++ IS +        +
Sbjct: 326 RKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAI 385

Query: 152 MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
            G     ++ G A K        ++   NT++  YA+ G + +A  +FD    +D  +W 
Sbjct: 386 KGYLEGIQLHGLAVKCGLDF---NICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWN 442

Query: 212 AMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELF-EAMPS 266
           A+++ + QN  ++E    F  M     + ++ ++ ++V        ++   E+    + S
Sbjct: 443 AIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS 502

Query: 267 RNVSSW---NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
                W   + +I  Y + G + +A K+ + + +R  VSW +IISG++     E AL+ F
Sbjct: 503 GMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYF 562

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
             + + G   +  T++  L  CA++A +ELGKQIHGQ++K    +  ++ + ++ MY KC
Sbjct: 563 SRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKC 622

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVL 443
           G++ ++  +FE   ++D V+W+ MI  YA HG G+ A+ +FE M+   VKP+    + VL
Sbjct: 623 GNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVL 682

Query: 444 SACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
            AC+H G +D+G  YF  M   Y + P  +HY+CM+DLLGR+G++ EA +L+ +MPFE  
Sbjct: 683 RACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEAD 742

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSR 563
              W  LLG  R+ GN E+ EKAA  + +++P +S  YVLLSN+YA +G W +   +RS 
Sbjct: 743 DVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSF 802

Query: 564 MRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
           M++  ++K  G SW++V++++H F VGD  HP  + IY     L  +M+ +GYV      
Sbjct: 803 MKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYVPEIDGF 862

Query: 624 LHDVEEEEKEHMLKYHSEKLAV 645
           L D E +E++    Y   K+ V
Sbjct: 863 LLDEEVDEQD---SYEGHKITV 881



 Score =  240 bits (613), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/601 (26%), Positives = 280/601 (46%), Gaps = 95/601 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N ++  Y +    + A ++FDKMPQRD++SWN M+ GY     +  A+ LFDSMP++DVV
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYV----HNGRIEEACRL 136
           SWN+MLS Y QNG+  ++ E+F +M       +  ++  +L A      +   ++  C  
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
                D ++++   L+  +   K L  A  +F +M  R+ V W+ +I+GY ++   ++  
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 197 NLF----------DQSPHQDVFTWTAMVSGY--------------------VQNGMLD-- 224
            L+           Q+     F   A +S +                    V    LD  
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMY 316

Query: 225 -------EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR---------- 267
                  +AR  F+  P     S+NA++ GY + +++  A E+F ++             
Sbjct: 317 AKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLS 376

Query: 268 -----------------------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
                                        N+   NT++  Y + G + +A  +FD M  +
Sbjct: 377 GALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK 436

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D VSW AII+ + Q  H EE L +F+ + R     +  TF   +  CA   AL  G ++H
Sbjct: 437 DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVH 496

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
           G+V+K+G     FVG+A++ MY KCG + EA  + E +EE+  VSWN++I+G++    G+
Sbjct: 497 GRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGE 556

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY--T 476
            AL  F  M  +GV PD  T   VL  C++   ++ G +    + K   +   S  Y  +
Sbjct: 557 NALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILK---LQLHSDVYIAS 613

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH 536
            ++D+  + G +++++ +    P +    +W A++ A   HG   LGE A ++  +M+  
Sbjct: 614 TIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAYAYHG---LGEDAIKLFEEMQLQ 669

Query: 537 N 537
           N
Sbjct: 670 N 670



 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 242/514 (47%), Gaps = 39/514 (7%)

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           NCL+  + K   L  A  +FDKM  RDV+SWNTMI GYA  G+M  A+ LFD  P +DV 
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAREL---- 260
           +W +M+S Y+QNG   ++   F +M     Q +  ++  ++          +  ++    
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLA 196

Query: 261 FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
            +     +V +   ++  Y     +  A  +F  MP+R+ V W+A+I+GY +   + E L
Sbjct: 197 IQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGL 256

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            ++  +  +G  ++++TF+ A  +CA ++A ELG Q+H   +KT +     VG A L MY
Sbjct: 257 KLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMY 316

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
            KC  + +A  VF         S N +I GYAR     +AL +F S++   +  DEI++ 
Sbjct: 317 AKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLS 376

Query: 441 GVLSACSHAGLIDRGTEYFYSMNK---DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           G L+ACS       G +      K   D+++  ++     ++D+  + G L EA  +  +
Sbjct: 377 GALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANT----ILDMYAKCGALMEACLIFDD 432

Query: 498 MPFEPPAASWGALLGASRIHGNTE--LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
           M  +  A SW A++ A   + + E  L    + +   MEP +   Y   S + A +G+ A
Sbjct: 433 MEIK-DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDD---YTFGSVVKACAGKKA 488

Query: 556 DAGNMRSRMRDV----GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKM 611
               M    R +    G+    G + +++  K            E ++I+  LEE     
Sbjct: 489 LNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLV-------EAEKIHERLEE----- 536

Query: 612 RREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAV 645
                VS   ++     E++ E+ L Y S  L V
Sbjct: 537 --RTTVSWNSIISGFSSEKQGENALSYFSRMLQV 568



 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 43/214 (20%)

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           + TFS     C+++ A+  GKQ H Q+  TG+    FV N LL  Y KC ++  A +VF+
Sbjct: 38  KLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 395 GIEEKDVVSWNTMIAGYA-------------------------------RHGFGKQALMV 423
            + ++DV+SWNTMI GYA                               ++GF ++++ +
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE-----YFYSMNKDYSVTPSSKHYTCM 478
           F  M+ + ++ D  T   VL AC+  G+ D G           M  D  V       T +
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACT--GIEDYGLGLQVHCLAIQMGFDSDVVTG----TAL 211

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           +D+     +L+ A ++   MP E  +  W A++ 
Sbjct: 212 VDMYSTCKKLDHAFNIFCEMP-ERNSVCWSAVIA 244


>Medtr5g044260.1 | PPR containing plant-like protein | HC |
           chr5:19452918-19451090 | 20130731
          Length = 565

 Score =  346 bits (887), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 293/552 (53%), Gaps = 41/552 (7%)

Query: 188 QDGDMSQAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQ---MPQKNE 238
           Q   +S  K +  Q      +P+   FTW  ++  Y ++ +  +      +     Q+NE
Sbjct: 23  QSNSISHVKQIHAQILRTIHTPNS--FTWNILIQSYSKSTLHKQKAILLYKAIITEQENE 80

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS-------------WNTMITGYGQNGDI 285
           +  +     +V    +     LF     + V +              N++I  Y   G +
Sbjct: 81  LFPDKHTYPFV----LKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYL 136

Query: 286 AQARKLFDMMPQ-RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
             ARK+FD M + R+ VSW  +I  YA+ G Y+  L MF E+ +  E  +  T    +  
Sbjct: 137 ETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEP-DCYTMQSVIRA 195

Query: 345 CADIAALELGKQIHGQVVKT---GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           C  + +L LG  +H  V+K           V   L+ MY KCGS+  A  VFEG+  +DV
Sbjct: 196 CGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDV 255

Query: 402 VSWNTMIAGYARHGFGKQALMVFESM-KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY 460
            SWN++I G+A HG  K AL  F  M K   + P+ IT VGVLSAC+H+G++D G  YF 
Sbjct: 256 SSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFE 315

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS-RIHGN 519
            M K+Y+V PS  HY C++DL  RAG ++EA +++  MP +P A  W +LL A  + H +
Sbjct: 316 MMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHAS 375

Query: 520 TELGEKAAEMVFKMEPHNS---GMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
            EL E+ A+ +F  E + S   G YVLLS +YA++ RW D G +R  M D GV K  G S
Sbjct: 376 VELSEEMAKQIF--ESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCS 433

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSS-TKLVLHDVEEEEKEHM 635
            +E+    H+F  GD  HP+   IY F+ E+  K+   GY+   +   L D   E K++ 
Sbjct: 434 LIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNT 493

Query: 636 LKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHH 695
           ++ HSE+LA+AFG+L      PIRV KNLRVC DCH   K IS+I    II+RD  RFHH
Sbjct: 494 MRLHSERLAIAFGLLNSKPSMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFHH 553

Query: 696 FNEGICSCGDYW 707
           F +G CSC DYW
Sbjct: 554 FKDGSCSCMDYW 565



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 126/276 (45%), Gaps = 35/276 (12%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ-KDVVSWNAMLSGYAQNGYADEAREVFY 107
           + D    N ++  Y     L  AR++FD M + ++VVSWN M+  YA+ G  D    +F 
Sbjct: 117 ELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFC 176

Query: 108 QM---------PHKNAI-SWNGL----LAAYVHNGRIEEACRLFDSKSDWELISWNCLMG 153
           +M           ++ I +  GL    L  +VH   +++     D     +++   CL+ 
Sbjct: 177 EMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKC----DKNVVCDVLVNTCLVD 232

Query: 154 GFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF-----DQSPHQDVF 208
            + K   L  A+++F+ M  RDV SWN++I G+A  G    A + F      +    +  
Sbjct: 233 MYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSI 292

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEA 263
           T+  ++S    +GM+DE   +F+ M ++  +      Y  +V  Y ++  +  A  +   
Sbjct: 293 TFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSE 352

Query: 264 MPSR-NVSSWNTMITG-YGQNGDI----AQARKLFD 293
           MP + +   W +++   Y Q+  +      A+++F+
Sbjct: 353 MPIKPDAVIWRSLLDACYKQHASVELSEEMAKQIFE 388



 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 155/375 (41%), Gaps = 68/375 (18%)

Query: 73  RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ----------MPHKNAISWNGLLA 122
           ++  ++   +  +WN ++  Y+++    +   + Y+           P K+   +     
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 123 AYVHNGRIEEACRLFDSKSDWELISWNC--LMGGFVKRKMLGAARKLFDKM-HVRDVVSW 179
           AY+ +    +       K  +EL ++ C  L+  +     L  ARK+FD+M   R+VVSW
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSW 155

Query: 180 NTMISGYAQDGDMSQAKNLFDQ---SPHQDVFTWTAMVS-----GYVQNGMLDEARTFFD 231
           N MI  YA+ GD      +F +       D +T  +++      G +  GM   A  F  
Sbjct: 156 NVMIDSYAKVGDYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHA--FVL 213

Query: 232 QMPQKNEIS----YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQ 287
           +   KN +        +V  Y +   +++A+++FE M  R+VSSWN++I G+  +G    
Sbjct: 214 KKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKA 273

Query: 288 ARKLFDMMPQ-----RDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           A   F  M +      + +++  ++S    +G  +E L M+ E+     ++  S      
Sbjct: 274 ALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGL-MYFEMMTKEYNVEPSLV---- 328

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA-NDVFEGIEEKDV 401
                                     GC     L+ +Y + G I EA N V E   + D 
Sbjct: 329 ------------------------HYGC-----LVDLYARAGHIQEALNVVSEMPIKPDA 359

Query: 402 VSWNTMI-AGYARHG 415
           V W +++ A Y +H 
Sbjct: 360 VIWRSLLDACYKQHA 374



 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 116/270 (42%), Gaps = 27/270 (10%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPH-KNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           D    N+++  YA  GY + AR+VF +M   +N +SWN ++ +Y   G  +    +F   
Sbjct: 119 DTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEM 178

Query: 141 SDWELISWNCLMGGFVKRKMLGAAR------------KLFDKMHVRDVVSWNTMISGYAQ 188
              ++   +C     V R   G               K  DK  V DV+    ++  Y +
Sbjct: 179 --MKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCK 236

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ-----KNEISYNA 243
            G +  AK +F+   ++DV +W +++ G+  +G    A  +F +M +      N I++  
Sbjct: 237 CGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVG 296

Query: 244 MVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
           +++    S  +D     FE M        ++  +  ++  Y + G I +A  +   MP +
Sbjct: 297 VLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIK 356

Query: 299 -DCVSWAAIISG-YAQTGHYEEALNMFIEI 326
            D V W +++   Y Q    E +  M  +I
Sbjct: 357 PDAVIWRSLLDACYKQHASVELSEEMAKQI 386



 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 109/252 (43%), Gaps = 54/252 (21%)

Query: 4   GHCDSALRVFNTMPR-RSSVSYNAMISGYLRNARFSLARDLF------------------ 44
           G+ ++A +VF+ M   R+ VS+N MI  Y +   + +   +F                  
Sbjct: 134 GYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEPDCYTMQSVI 193

Query: 45  -----------------------DKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
                                  DK    D++    ++  Y +   L  A+++F+ M  +
Sbjct: 194 RACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYR 253

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPH-----KNAISWNGLLAAYVHNGRIEEACRL 136
           DV SWN+++ G+A +G A  A + F +M        N+I++ G+L+A  H+G ++E    
Sbjct: 254 DVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMY 313

Query: 137 FDSKS-----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISG-YAQD 189
           F+  +     +  L+ + CL+  + +   +  A  +  +M ++ D V W +++   Y Q 
Sbjct: 314 FEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQH 373

Query: 190 GDMSQAKNLFDQ 201
             +  ++ +  Q
Sbjct: 374 ASVELSEEMAKQ 385


>Medtr4g119120.1 | PPR containing plant-like protein | HC |
           chr4:49335688-49337418 | 20130731
          Length = 576

 Score =  346 bits (887), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 194/520 (37%), Positives = 294/520 (56%), Gaps = 33/520 (6%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQM------PHKNAIS------------WNGLLA- 122
           D  SW  ++  ++Q G   EA  ++ QM      P  +A+S              GLL  
Sbjct: 68  DSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDDLCGLLIH 127

Query: 123 AYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
            +VH    + AC    +     L+   C +G  V       ARK+FD+M  ++VVSWN++
Sbjct: 128 GHVHKFGFD-ACVYVQT----ALLDLYCKIGDVV------TARKVFDEMPDKNVVSWNSL 176

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN 242
           +SGY + G++ + +  FD+ P +DV +W  MVSGY + G +D A   F QMP++N  S+N
Sbjct: 177 LSGYIKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWN 236

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVS 302
            M+ GYV    +  ARELF+AMP RN  S  TMI GY ++GD+  AR+LFD M  +D +S
Sbjct: 237 TMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLS 296

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQ 360
           + A+I+ YAQ+   +EAL++F  + +   SL  ++ T +  +S C+ +  LE  + I  Q
Sbjct: 297 YNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQ 356

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
           +   G      +  AL+ +Y KCGSI +A ++F G+ ++DVV+++ MI G   +G    A
Sbjct: 357 INNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDA 416

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
           + +FE M    + P+ +T  G+L+A +HAGL + G   F SM KD  + PS  HY  M+D
Sbjct: 417 VELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISM-KDNGIVPSVDHYGIMVD 475

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LLGRAG L+EA  L+  MP +P    WGALL A R+H N +LGE A +   K+E   +G 
Sbjct: 476 LLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGY 535

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEV 580
           Y LLS +YA  G+W DA  + + +    + K+ G SW ++
Sbjct: 536 YSLLSGIYATVGKWNDAKKLTTGVEGKKIIKIPGCSWTQL 575



 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 14/320 (4%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A++  Y +      AR +FD+MP +++VSWN +L+GY++   L + +R FD +P KDV+
Sbjct: 143 TALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNLDEGQRFFDEIPLKDVI 202

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           SWN M+SGYA+ G  D A  +F QMP +N  SWN ++  YV  G I EA  LFD+     
Sbjct: 203 SWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGSIVEARELFDAMPRRN 262

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----- 199
            +S   ++ G+ K   + +AR+LFD+M  +D++S+N MI+ YAQ     +A +LF     
Sbjct: 263 SVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKEALDLFNVMLK 322

Query: 200 -DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKM 254
            D S H D  T  +++S   Q G L+  R    Q+       ++    A++  Y +   +
Sbjct: 323 PDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYAKCGSI 382

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGY 310
           D A ELF  +  R+V +++ MI G G NG  + A +LF+ M       + V++  I++ Y
Sbjct: 383 DKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTGILTAY 442

Query: 311 AQTGHYEEALNMFIEIKRDG 330
              G  EE    FI +K +G
Sbjct: 443 NHAGLAEEGYRCFISMKDNG 462



 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 200/426 (46%), Gaps = 48/426 (11%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G+ D   R F+ +P +  +S+N M+SGY +  +   A  LF +MP+R+  SWN M+T
Sbjct: 181 IKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMIT 240

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           GYV    + +AR LFD+MP+++ VS   M++GY+++G    ARE+F QM  K+ +S+N +
Sbjct: 241 GYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAM 300

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF-DKMHVRDVVSW 179
           +A Y  + + +EA  LF+                     ML     L  DKM +  V   
Sbjct: 301 IACYAQSSKPKEALDLFNV--------------------MLKPDSSLHPDKMTLASV--- 337

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPH----QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
              IS  +Q G++   + +  Q  +     D    TA++  Y + G +D+A   F  + +
Sbjct: 338 ---ISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRK 394

Query: 236 KNEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKL 291
           ++ ++Y+AM+ G   + +   A ELFE M       N+ ++  ++T Y   G   +  + 
Sbjct: 395 RDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRC 454

Query: 292 FDMMPQRDCVS----WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
           F  M     V     +  ++    + G  +EA  + +++       N   +   L  C  
Sbjct: 455 FISMKDNGIVPSVDHYGIMVDLLGRAGWLDEAYKLIMKMPMQP---NVGVWGALLLACRL 511

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV----- 402
              L+LG+      +K   ET  +  + L G+Y   G   +A  +  G+E K ++     
Sbjct: 512 HDNLKLGEIAVQHCIKLESETAGYY-SLLSGIYATVGKWNDAKKLTTGVEGKKIIKIPGC 570

Query: 403 SWNTMI 408
           SW  ++
Sbjct: 571 SWTQLV 576


>Medtr4g024860.1 | SLOW growth protein | HC | chr4:8430392-8426025 |
           20130731
          Length = 1026

 Score =  345 bits (886), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 205/638 (32%), Positives = 325/638 (50%), Gaps = 71/638 (11%)

Query: 48  PQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYA-------- 99
           P    ++WN   + +VR   L        S+ Q   +    + +G  +NG+A        
Sbjct: 41  PITKTINWNTTHS-FVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFC 99

Query: 100 --------DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-------KSD-- 142
                   D    + Y++   N  SWN  +  YV +G IE    L+         K D  
Sbjct: 100 ALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNH 159

Query: 143 -WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
            + L+   C  G +     LG    +       D+   N  I+     G++S A ++F++
Sbjct: 160 TYPLLLKGCC-GQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNK 218

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISY---------------- 241
           S  +D+ TW +M++G V+ G+  EA   + +M     + NEI+                 
Sbjct: 219 SRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLG 278

Query: 242 -------------------NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQN 282
                              NA++  YV+  ++  AR LF+ M  + + SW TM+ GY + 
Sbjct: 279 KEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARF 338

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           G +  AR++   +P++  V W AIISG  Q    +EAL +F E++      ++ T    L
Sbjct: 339 GFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCL 398

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
           S C+ + AL++G  IH  + +        +G AL+ MY KCG+I  A  VFE I +++ +
Sbjct: 399 SACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCL 458

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           +W  +I G A HG  + AL  F  M  IG+ PDEIT +GVLSAC H GL++ G +YF  M
Sbjct: 459 TWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEM 518

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTEL 522
           +  ++V+P  KHY+CM+DLLGRAG LEEA++L++NMP    AA  GAL  A R++GN ++
Sbjct: 519 SSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQI 578

Query: 523 GEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
           GE+ A  + +++P +SG YVLL+++Y+ +  W +A + R  M D GV+K  G S VE+  
Sbjct: 579 GERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEING 638

Query: 583 KIHKFTVGDCFHPEKDRIYAFL----EELDLKMRREGY 616
            +H+F V D  HP+ + IY  L    ++LD+ +R+ GY
Sbjct: 639 IVHEFVVRDVSHPQSEWIYECLVTLTKQLDVIVRKHGY 676



 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 64/353 (18%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG-- 61
           G    A  VFN    R  V++N+MI+G ++      A  ++ +M    +    + + G  
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266

Query: 62  -------------------------------------YVRNRRLGDARRLFDSMPQKDVV 84
                                                YV+   L  AR LFD+M QK +V
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD-----S 139
           SW  M+ GYA+ G+ D ARE+ Y++P K+ + WN +++  V   + +EA  LF      +
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386

Query: 140 KSDWELISWNCLMGGFVKRKMLGA------ARKLFDKMHVR-DVVSWNTMISGYAQDGDM 192
               ++   NCL         LGA           ++  +  DV     ++  YA+ G++
Sbjct: 387 IEPDKVTMVNCLSAC----SQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNI 442

Query: 193 SQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGY 248
           ++A  +F++ P ++  TWTA++ G   +G   +A ++F +M       +EI++  +++  
Sbjct: 443 ARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSAC 502

Query: 249 VQSNKMDMARELFEAMPSR-NVSS----WNTMITGYGQNGDIAQARKLFDMMP 296
                ++  R+ F  M S+ NVS     ++ M+   G+ G + +A +L   MP
Sbjct: 503 CHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMP 555



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 151/325 (46%), Gaps = 24/325 (7%)

Query: 24  YNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
           +NA I+  L     S+A D+F+K   RDLV+WN M+TG V+     +A +++  M  + V
Sbjct: 196 HNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKV 255

Query: 84  ----VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW-----NGLLAAYVHNGRIEEAC 134
               ++   M+S  +Q    +  +E F+    ++ + +     N L+  YV  G +  A 
Sbjct: 256 RPNEITMIGMISSCSQVQDLNLGKE-FHCYIKEHGLEFTIPLTNALMDMYVKCGELLTAR 314

Query: 135 RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
            LFD+ +   L+SW  ++ G+ +   L  AR++  K+  + VV WN +ISG  Q     +
Sbjct: 315 VLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKE 374

Query: 195 AKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN-----AMV 245
           A  LF +    +   D  T    +S   Q G LD    +     +++++S +     A+V
Sbjct: 375 ALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD-VGIWIHHYIERHKLSIDVALGTALV 433

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQ----RDCV 301
             Y +   +  A ++FE +P RN  +W  +I G   +G+   A   F  M       D +
Sbjct: 434 DMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEI 493

Query: 302 SWAAIISGYAQTGHYEEALNMFIEI 326
           ++  ++S     G  EE    F E+
Sbjct: 494 TFLGVLSACCHGGLVEEGRKYFSEM 518



 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 25/318 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA++  Y++      AR LFD M Q+ LVSW  M+ GY R   L  AR +   +P+K VV
Sbjct: 298 NALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFD-- 138
            WNA++SG  Q     EA  +F++M       + ++    L+A    G ++    +    
Sbjct: 358 PWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYI 417

Query: 139 --SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
              K   ++     L+  + K   +  A ++F+++  R+ ++W  +I G A  G+   A 
Sbjct: 418 ERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDAL 477

Query: 197 NLFDQSPH----QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAG 247
           + F +  H     D  T+  ++S     G+++E R +F +M  K  +S     Y+ MV  
Sbjct: 478 SYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDL 537

Query: 248 YVQSNKMDMARELFEAMPSRNVSS------WNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
             ++  ++ A EL + MP    ++      +   + G  Q G+   A KL ++ PQ D  
Sbjct: 538 LGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGE-RTAFKLLEIDPQ-DSG 595

Query: 302 SWAAIISGYAQTGHYEEA 319
           ++  + S Y++   ++EA
Sbjct: 596 NYVLLASMYSEAKMWKEA 613


>Medtr7g109860.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:45010556-45008657 | 20130731
          Length = 512

 Score =  345 bits (885), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 182/505 (36%), Positives = 279/505 (55%), Gaps = 47/505 (9%)

Query: 118 NGLLAAYVHNGRIEEACRLFDSKS-DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV 176
           N ++  Y+ N  +++A +L D       ++SWN +M  +++   +G    LFDKM ++D 
Sbjct: 12  NYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDA 71

Query: 177 VSWNTMISGYAQ--------------------------------------DGDMSQAKNL 198
           VSWN M+SG+ +                                      D  + Q   L
Sbjct: 72  VSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHAL 131

Query: 199 -FDQSPHQDVFTWTAMVSGYVQNGMLDE---ARTFFDQMPQKNEISYNAMVAGYVQSNKM 254
            F    + +VF  ++++  Y   G+ +E    R F D +  K+  S+NA+V+ Y++  K 
Sbjct: 132 AFHLGHYLNVFVGSSLIRAYA--GLKEEEALGRAFND-ISMKDVTSWNALVSSYMELGKF 188

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
             A+  F+ MP RN+ SW T++ GY +N  + +AR +FD M +R+ VSW A+ISGY Q  
Sbjct: 189 VDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNK 248

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
            + +AL +F+ + +     N  TFS  L  CA  ++L +G Q+H  ++K+G         
Sbjct: 249 RFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLT 308

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKP 434
           +L+ MY KCG +  A  VFE I +K++VSWN +I GYA HG   +AL  F+ MK +G  P
Sbjct: 309 SLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGT-P 367

Query: 435 DEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
           DE+T V VLSAC HAGL++ G ++F  M   Y +    +HY+CM+DL GRAGR +EA++L
Sbjct: 368 DEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENL 427

Query: 495 MRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRW 554
           ++NMPFEP    WGALL A  +H N ELGE AAE + ++E  +   Y +LS +    G W
Sbjct: 428 IKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVW 487

Query: 555 ADAGNMRSRMRDVGVQKVTGYSWVE 579
           +    +R  M++ G++K T  SWVE
Sbjct: 488 SSVNELRDTMKERGIKKQTAISWVE 512



 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 210/443 (47%), Gaps = 57/443 (12%)

Query: 25  NAMISGYLRNARFSLARDLFDK-MPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
           N MI+ Y+ N     A  L D+ +   ++VSWN+++T Y+++ ++G    LFD MP KD 
Sbjct: 12  NYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDA 71

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQM------PHKNAISWNGLLAAYVHNGRIEEACRLF 137
           VSWN MLSG+ +   ++     F QM      P+   IS   LL A + +  ++   R  
Sbjct: 72  VSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTIS--TLLRAVI-STELDVLVRQV 128

Query: 138 DSKSDWELISWNCLMGGFVKRKMLG-----AARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
            + +       N  +G  + R   G     A  + F+ + ++DV SWN ++S Y + G  
Sbjct: 129 HALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELGKF 188

Query: 193 SQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSN 252
             A+  FDQ P +++ +WT +V+GYV+N  +++AR+ FD M ++N +S+ AM++GYVQ+ 
Sbjct: 189 VDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNK 248

Query: 253 KMDMARELF------EAMP---------------------------------SRNVSSWN 273
           +   A +LF      E  P                                 + +V    
Sbjct: 249 RFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLT 308

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
           +++  Y + GD+  A  +F+ +  ++ VSW AII GYA  G    AL  F  +K  G   
Sbjct: 309 SLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTP- 367

Query: 334 NRSTFSCALSTCADIAALELG-KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
           +  TF   LS C     +E G K     + K G +      + ++ +Y + G   EA ++
Sbjct: 368 DEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENL 427

Query: 393 FEGIE-EKDVVSWNTMIAGYARH 414
            + +  E DVV W  ++A    H
Sbjct: 428 IKNMPFEPDVVLWGALLAACGLH 450



 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 153/294 (52%), Gaps = 21/294 (7%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGD 70
           R FN +  +   S+NA++S Y+   +F  A+  FD+MPQR+++SW  ++ GYV+N+++  
Sbjct: 162 RAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNK 221

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVH 126
           AR +FD M +++VVSW AM+SGY QN    +A ++F  M       N  +++ +L A   
Sbjct: 222 ARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAG 281

Query: 127 NGRIEEACRL----FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
           +  +    +L      S    ++I    L+  + K   + AA  +F+ +  +++VSWN +
Sbjct: 282 SSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAI 341

Query: 183 ISGYAQDGDMSQAKNLFDQ-----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
           I GYA  G  ++A   FD+     +P  D  T+  ++S  V  G+++E    F  M  K 
Sbjct: 342 IGGYASHGLATRALEEFDRMKVVGTP--DEVTFVNVLSACVHAGLVEEGEKHFTDMLTKY 399

Query: 238 EIS-----YNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDI 285
            I      Y+ MV  Y ++ + D A  L + MP   +V  W  ++   G + ++
Sbjct: 400 GIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNL 453



 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 164/385 (42%), Gaps = 87/385 (22%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR------- 64
           +F+ MP + +VS+N M+SG+ R          F +M +  +V  +  ++  +R       
Sbjct: 62  LFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTEL 121

Query: 65  ------------------NRRLGDAR--------------RLFDSMPQKDVVSWNAMLSG 92
                             N  +G +               R F+ +  KDV SWNA++S 
Sbjct: 122 DVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSS 181

Query: 93  YAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLM 152
           Y + G   +A+  F QMP +N ISW  L+  YV N ++ +A  +FD  S+  ++SW  ++
Sbjct: 182 YMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMI 241

Query: 153 GGFVKRKMLGAARKLFDKMH---------------------------------------V 173
            G+V+ K    A KLF  M                                         
Sbjct: 242 SGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIA 301

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
            DV+   +++  YA+ GDM  A  +F+    +++ +W A++ GY  +G+   A   FD+M
Sbjct: 302 NDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRM 361

Query: 234 P---QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDI 285
                 +E+++  +++  V +  ++   + F  M ++      +  ++ M+  YG+ G  
Sbjct: 362 KVVGTPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRF 421

Query: 286 AQARKLFDMMP-QRDCVSWAAIISG 309
            +A  L   MP + D V W A+++ 
Sbjct: 422 DEAENLIKNMPFEPDVVLWGALLAA 446



 Score =  109 bits (273), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 157/326 (48%), Gaps = 20/326 (6%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           M  G    A   F+ MP+R+ +S+  +++GY++N + + AR +FD M +R++VSW  M++
Sbjct: 183 MELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMIS 242

Query: 61  GYVRNRRLGDARRLFDSMPQKDV----VSWNAMLSGYAQNG---YADEAREVFYQMPHKN 113
           GYV+N+R  DA +LF  M + +      +++++L   A +       +      +    N
Sbjct: 243 GYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIAN 302

Query: 114 AISW-NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
            + W   L+  Y   G ++ A  +F+S  D  L+SWN ++GG+    +   A + FD+M 
Sbjct: 303 DVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMK 362

Query: 173 V---RDVVSWNTMIS-----GYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
           V    D V++  ++S     G  ++G+      L       ++  ++ MV  Y + G  D
Sbjct: 363 VVGTPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFD 422

Query: 225 EARTFFDQMP-QKNEISYNAMVAGYVQSNKMDM---ARELFEAMPSRNVSSWNTMITGYG 280
           EA      MP + + + + A++A     + +++   A E    + S +  S++ +    G
Sbjct: 423 EAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQG 482

Query: 281 QNGDIAQARKLFDMMPQRDCVSWAAI 306
           + G  +   +L D M +R      AI
Sbjct: 483 EKGVWSSVNELRDTMKERGIKKQTAI 508


>Medtr7g100810.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:40624011-40626927 | 20130731
          Length = 793

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/675 (29%), Positives = 337/675 (49%), Gaps = 88/675 (13%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q  ++  N M+  Y +   + DAR++FD+M   +VVSW +M+SGY+QNG A++A  ++ Q
Sbjct: 97  QPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQ 156

Query: 109 MP------------------------------HKNAI-SW--------NGLLAAYVHNGR 129
           M                               H + I SW        N L++ Y + G+
Sbjct: 157 MTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQ 216

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISG---- 185
           IE A  +F      +LISW  ++ G+++      A  LF  +  +     N  I G    
Sbjct: 217 IEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFS 276

Query: 186 ------------------------------------YAQDGDMSQAKNLFDQSPHQDVFT 209
                                               YA+ G +  AK  F Q  + D+ +
Sbjct: 277 ACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVS 336

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMP 265
           W A+++ +  NG  +EA  FF QM       + I+Y +++       +++  R++   + 
Sbjct: 337 WNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIV 396

Query: 266 S----RNVSSWNTMITGYGQNGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEAL 320
                + ++  N+++T Y +   +  A  +F D+    + VSW AI+S   Q     E  
Sbjct: 397 KIGFDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETF 456

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            ++ E+   G   +  T +  L TCA++ +L +G Q+H   +K+G      V N L+ MY
Sbjct: 457 RLYKEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMY 516

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
            KCGS+  A DVF+  +  D+VSW+++I GYA+ G G +AL +F  M  +GV+P+E+T +
Sbjct: 517 AKCGSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYL 576

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
           G LSACSH GL++ G   + SM  ++ + P+ +H++C++DLL RAG L EA+  ++    
Sbjct: 577 GALSACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGL 636

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
           +    +W  LL A + H N ++ E+ A  + K++P NS   V+L N++A++G W +   +
Sbjct: 637 DADITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKL 696

Query: 561 RSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 620
           R  M+ +GVQKV G SW+EV++K H F   D  HP+++ IY  LEEL  ++  +GY    
Sbjct: 697 RKLMKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWSQVLDDGYDPCQ 756

Query: 621 KLVLHDVEEEEKEHM 635
              + ++  ++K ++
Sbjct: 757 SCYIQNMYLKKKNYI 771



 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 7/279 (2%)

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSRN----VSSWNTMITGYGQNGDIAQARKLFDMM 295
           +Y ++V        +D A+++ + +   N    +   N MI  YG+ G +  ARK+FD M
Sbjct: 67  TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 126

Query: 296 PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
              + VSW ++ISGY+Q G   +A+ M+I++ R G+  ++ TF   +  C     ++LG+
Sbjct: 127 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 186

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
           Q+H  V+K+ +       NAL+ MY   G I  A++VF  I  KD++SW TMI GY + G
Sbjct: 187 QLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLG 246

Query: 416 FGKQALMVFESMKTIGV-KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKH 474
           +  +AL +F  +   G  +P+E     V SACS    ++ G +  + M   + +  +   
Sbjct: 247 YRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQ-VHGMCVKFGLRRNVFA 305

Query: 475 YTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
              + D+  + G L  A+     +   P   SW A++ A
Sbjct: 306 GCSLCDMYAKFGFLPSAKMAFCQIK-NPDIVSWNAIIAA 343



 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 315 HYEEALNMF-IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
           HY+EAL  F   +K        ST++  +  CA+  +L+  K+IH  V+K+ Y+    + 
Sbjct: 44  HYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQ 103

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
           N ++ MY KCGS+ +A  VF+ ++  +VVSW +MI+GY+++G    A++++  M   G  
Sbjct: 104 NHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQF 163

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYT---CMIDLLGRAGRLEE 490
           PD++T   V+ AC  AG ID G +    + K +       H T    +I +    G++E 
Sbjct: 164 PDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSW----FGHHLTSQNALISMYTNFGQIEH 219

Query: 491 AQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMY 541
           A ++   +P +    SWG +     I G  +LG +   +    +    G Y
Sbjct: 220 ASNVFTRIPTK-DLISWGTM-----ITGYIQLGYRVEALYLFRDLLRQGTY 264


>Medtr2g072010.1 | PPR containing plant-like protein | HC |
           chr2:30162883-30164901 | 20130731
          Length = 515

 Score =  341 bits (875), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 289/510 (56%), Gaps = 40/510 (7%)

Query: 78  MPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI------- 130
           M QK++V+W AML  YA+NG    AR++F +MP +   ++N +++ Y+   R        
Sbjct: 1   MSQKNIVTWTAMLVVYAKNGQIINARKLFDKMPERTTATYNAMISGYILKARKFHLAEEL 60

Query: 131 --EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--HVRDVVSWNTMISGY 186
             E  C   D       +  N LM G++K      A ++F+ +    RDVVSW+ ++ G 
Sbjct: 61  YREVPCEFRDP------VCSNALMNGYLKIGETNEALRVFENVGESKRDVVSWSAVVVGL 114

Query: 187 AQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM-- 244
            +DG +  A+ LFD+ P ++V +W+AM+ GY++ G+ +    FF +M ++  +  N+   
Sbjct: 115 CRDGRIGYARKLFDRMPERNVVSWSAMIDGYMEKGLFENGFGFFLEMRREGVVEVNSTTM 174

Query: 245 ------------------VAGYVQS---NKMDMARELFEAMPSRNVSSWNTMITGYGQNG 283
                             + G V       +D A E+FE MP +++ SW  MI  +  +G
Sbjct: 175 TIMIKGCGNCGGVKDGMQIHGLVSRLGFEFVDAAYEVFERMPEKDLISWTAMIRRFVTDG 234

Query: 284 DIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALS 343
            + +  +LFD + ++D   W  +ISG+     YEEAL  ++ + R+G   N  T S  L+
Sbjct: 235 RMGKPVELFDTLKEKDDFVWTVLISGFVSNEEYEEALCWYVRMNREGCKPNPLTISSVLA 294

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
             A + AL  G QIH  V+K   E    + N+L+  Y KCG++ +A  +F  + E +VVS
Sbjct: 295 ASASLVALNEGLQIHSHVLKMNLEYDLSIQNSLISFYAKCGNVTDAYKIFVDVVELNVVS 354

Query: 404 WNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN 463
            N++I G+ ++GFG++AL +++ M+   ++P+ +T + VLSAC+HAGLI+ G   F +M 
Sbjct: 355 NNSVINGFTQNGFGEEALNMYKRMQNESLEPNRVTFLAVLSACTHAGLIEEGRNLFDTMK 414

Query: 464 KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
             Y   P + HY CM+DLLGRAG L+EA DL+R++  +P +  WGALL AS  H   +L 
Sbjct: 415 SRYRNEPDADHYACMVDLLGRAGLLDEANDLIRSITVKPHSGVWGALLAASSAHLRLDLA 474

Query: 524 EKAAEMVFKMEPHNSGMYVLLSNLYAASGR 553
           + AA+ + K+EP N+  YV+LSNLY+A+G+
Sbjct: 475 KLAAQHITKLEPANATPYVVLSNLYSAAGQ 504



 Score =  196 bits (497), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 237/457 (51%), Gaps = 50/457 (10%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNAR-FSLARDLFDKMPQ--RDLVSWNVM 58
           +NG   +A ++F+ MP R++ +YNAMISGY+  AR F LA +L+ ++P   RD V  N +
Sbjct: 18  KNGQIINARKLFDKMPERTTATYNAMISGYILKARKFHLAEELYREVPCEFRDPVCSNAL 77

Query: 59  LTGYVRNRRLGDARRLFDSM--PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS 116
           + GY++     +A R+F+++   ++DVVSW+A++ G  ++G    AR++F +MP +N +S
Sbjct: 78  MNGYLKIGETNEALRVFENVGESKRDVVSWSAVVVGLCRDGRIGYARKLFDRMPERNVVS 137

Query: 117 WNGLLAAYVHNGRIEEACRLF-----------DSKSDWELIS--WNC-------LMGGFV 156
           W+ ++  Y+  G  E     F           +S +   +I    NC        + G V
Sbjct: 138 WSAMIDGYMEKGLFENGFGFFLEMRREGVVEVNSTTMTIMIKGCGNCGGVKDGMQIHGLV 197

Query: 157 KR---KMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAM 213
            R   + + AA ++F++M  +D++SW  MI  +  DG M +   LFD    +D F WT +
Sbjct: 198 SRLGFEFVDAAYEVFERMPEKDLISWTAMIRRFVTDGRMGKPVELFDTLKEKDDFVWTVL 257

Query: 214 VSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRN- 268
           +SG+V N   +EA  ++ +M ++    N ++ ++++A       ++   ++   +   N 
Sbjct: 258 ISGFVSNEEYEEALCWYVRMNREGCKPNPLTISSVLAASASLVALNEGLQIHSHVLKMNL 317

Query: 269 ---VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
              +S  N++I+ Y + G++  A K+F  + + + VS  ++I+G+ Q G  EEALNM+  
Sbjct: 318 EYDLSIQNSLISFYAKCGNVTDAYKIFVDVVELNVVSNNSVINGFTQNGFGEEALNMYKR 377

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET-------GCFVGNALLG 378
           ++ +    NR TF   LS C     +E G+ +    +K+ Y          C V   LLG
Sbjct: 378 MQNESLEPNRVTFLAVLSACTHAGLIEEGRNLF-DTMKSRYRNEPDADHYACMVD--LLG 434

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVS-WNTMIAGYARH 414
              + G + EAND+   I  K     W  ++A  + H
Sbjct: 435 ---RAGLLDEANDLIRSITVKPHSGVWGALLAASSAH 468



 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 73/365 (20%)

Query: 1   MRNGHCDSALRVFNTM--PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVM 58
           ++ G  + ALRVF  +   +R  VS++A++ G  R+ R   AR LFD+MP+R++VSW+ M
Sbjct: 82  LKIGETNEALRVFENVGESKRDVVSWSAVVVGLCRDGRIGYARKLFDRMPERNVVSWSAM 141

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNA-----MLSGYAQNG---------------- 97
           + GY+      +    F  M ++ VV  N+     M+ G    G                
Sbjct: 142 IDGYMEKGLFENGFGFFLEMRREGVVEVNSTTMTIMIKGCGNCGGVKDGMQIHGLVSRLG 201

Query: 98  --YADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGF 155
             + D A EVF +MP K+ ISW  ++  +V +GR+ +   LFD+  + +   W  L+ GF
Sbjct: 202 FEFVDAAYEVFERMPEKDLISWTAMIRRFVTDGRMGKPVELFDTLKEKDDFVWTVLISGF 261

Query: 156 VKRK--------------------------MLGAARKLFD------------KMHVR-DV 176
           V  +                          +L A+  L              KM++  D+
Sbjct: 262 VSNEEYEEALCWYVRMNREGCKPNPLTISSVLAASASLVALNEGLQIHSHVLKMNLEYDL 321

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-- 234
              N++IS YA+ G+++ A  +F      +V +  ++++G+ QNG  +EA   + +M   
Sbjct: 322 SIQNSLISFYAKCGNVTDAYKIFVDVVELNVVSNNSVINGFTQNGFGEEALNMYKRMQNE 381

Query: 235 --QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQ 287
             + N +++ A+++    +  ++  R LF+ M SR     +   +  M+   G+ G + +
Sbjct: 382 SLEPNRVTFLAVLSACTHAGLIEEGRNLFDTMKSRYRNEPDADHYACMVDLLGRAGLLDE 441

Query: 288 ARKLF 292
           A  L 
Sbjct: 442 ANDLI 446


>Medtr3g096440.1 | PPR containing plant-like protein | HC |
           chr3:44085648-44087691 | 20130731
          Length = 580

 Score =  340 bits (873), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/519 (37%), Positives = 292/519 (56%), Gaps = 24/519 (4%)

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
           NGL+  Y   G  E   + FD   +    +WN L+  + K+ +   A KLFD+M  R++V
Sbjct: 50  NGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLV 109

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPH------QDVFTWTAMVSGYVQNGMLDEARTFFD 231
           S+N++ISG  +     +A   F +  +       D FT  ++VS       LD  + +  
Sbjct: 110 SYNSLISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNC---SCLDTVK-WLR 165

Query: 232 QMP--------QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNG 283
           Q+         + N I  NA++  Y +  + + +  LF +M  ++  SW +M+  Y +  
Sbjct: 166 QVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRAS 225

Query: 284 DIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALS 343
            I  A K+F+ MP +  VSWAA+ISG+ + G   EAL +F ++ ++G      TF   L 
Sbjct: 226 RIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLD 285

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCF---VGNALLGMYFKCGSIGEANDVFEG-IEEK 399
            CA  A +  GKQ+H Q+++       F   V NAL+ MY KCG +  A ++FE  I  K
Sbjct: 286 ACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVK 345

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           DVVSWNT+I G+A++G G+ +L VF+ M    ++P+ +T +GVLSAC+HAGL++ G E  
Sbjct: 346 DVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELL 405

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP--AASWGALLGASRIH 517
            SM + Y V P S HY  +IDLLGR  RLEEA  L+  +P E     A WGA+LG  R+H
Sbjct: 406 DSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVH 465

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
           GN EL  KAAE +F +EP N+G YV+LSN+YAASGRW+D   +R+ M++ G++K   +S 
Sbjct: 466 GNLELARKAAEALFALEPENTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKEPAFSR 525

Query: 578 VEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
           +E++   H+F   D FHP+   I     +L   M   GY
Sbjct: 526 IELKESRHEFVAKDKFHPQIGEIREANSKLVQHMMDVGY 564



 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 162/341 (47%), Gaps = 32/341 (9%)

Query: 44  FDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAR 103
           FD +P +   +WN +L+ Y +      A +LFD MPQ+++VS+N+++SG  ++ +  EA 
Sbjct: 69  FDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAV 128

Query: 104 EVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW---------------ELISW 148
           + F +M  +N +   GL+        +   C   D+   W                LI  
Sbjct: 129 KFFREM--QNGVG--GLMLDEFTLVSLVSNCSCLDT-VKWLRQVHGVATIVGFRTNLILN 183

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           N L+  + K     ++  LF  M  +D VSW +M+  Y +   +  A  +F++ P +   
Sbjct: 184 NALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTV 243

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQMPQKNEI----SYNAMVAGYVQSNKMDMARELF-EA 263
           +W A++SG+V+NG   EA   F QM ++  +    ++ +++        +   +++  + 
Sbjct: 244 SWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQI 303

Query: 264 MPSR------NVSSWNTMITGYGQNGDIAQARKLFDMMPQ-RDCVSWAAIISGYAQTGHY 316
           +  R      NV  +N ++  Y + GD+  A  LF+MM   +D VSW  +I+G+AQ G  
Sbjct: 304 IRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRG 363

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQI 357
           E++L +F  +       N  TF   LS C     +  G ++
Sbjct: 364 EDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLEL 404



 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 167/332 (50%), Gaps = 33/332 (9%)

Query: 18  RRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDS 77
           R + +  NA+I  Y +    + +  LF  M ++D VSW  M+  Y R  R+ DA ++F+ 
Sbjct: 177 RTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNE 236

Query: 78  MPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAAYVHNGRI--- 130
           MP K  VSW A++SG+ +NG   EA EVF+QM  +  +    ++  +L A      I   
Sbjct: 237 MPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRG 296

Query: 131 -EEACRLFDSKSDWELIS---WNCLMGGFVKRKMLGAARKLFDKM-HVRDVVSWNTMISG 185
            +  C++   +S   L +   +N LM  + K   + +A  LF+ M HV+DVVSWNT+I+G
Sbjct: 297 KQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITG 356

Query: 186 YAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQM-------P 234
           +AQ+G    +  +FD+    ++     T+  ++S     G+++      D M       P
Sbjct: 357 FAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKP 416

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMP---SRNVSSWNTMITGYGQNGDIAQARK- 290
           + N   Y  ++    + N+++ A  L E +P   S +++ W  ++ G   +G++  ARK 
Sbjct: 417 KSNH--YALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKA 474

Query: 291 ---LFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
              LF + P+ +   +  + + YA +G + + 
Sbjct: 475 AEALFALEPE-NTGRYVMLSNIYAASGRWSDT 505



 Score =  127 bits (319), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 175/409 (42%), Gaps = 96/409 (23%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNR 66
           +S  + F+ +P +++ ++N ++S Y +   F+ A  LFD+MPQR+LVS+N +++G  R+ 
Sbjct: 63  ESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHE 122

Query: 67  RLGDARRLFDSMPQK---------------------DVVSW------------------- 86
              +A + F  M                        D V W                   
Sbjct: 123 FHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLIL 182

Query: 87  -NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL 145
            NA++  Y + G  + +  +F  M  K+A+SW  ++  Y    RI++AC++F+       
Sbjct: 183 NNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYT 242

Query: 146 ISWNCLMGGFVKRKMLGAARKLFDKM---------------------------------- 171
           +SW  L+ GFVK      A ++F +M                                  
Sbjct: 243 VSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQ 302

Query: 172 --------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH-QDVFTWTAMVSGYVQNGM 222
                   ++ +V  +N ++  YA+ GDM  A+NLF+   H +DV +W  +++G+ QNG 
Sbjct: 303 IIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGR 362

Query: 223 LDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWN 273
            +++   FD+M +     N +++  +++    +  ++   EL ++M  R       + + 
Sbjct: 363 GEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYA 422

Query: 274 TMITGYGQNGDIAQARKLFDMMPQR---DCVSWAAIISGYAQTGHYEEA 319
            +I   G+   + +A  L + +P         W A++ G    G+ E A
Sbjct: 423 LLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELA 471



 Score =  112 bits (281), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 153/382 (40%), Gaps = 70/382 (18%)

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG----YVQNGMLDEARTFFDQMP 234
           ++++IS       +   K L  Q     +F  T + +G    Y + G  +     FD +P
Sbjct: 14  FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 73

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
            K   ++N +++ Y +    + A +LF+ MP RN+ S+N++                   
Sbjct: 74  NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSL------------------- 114

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR--DGESLNRSTFSCALSTCADIAALE 352
                       ISG  +   ++EA+  F E++    G  L+  T    +S C+ +  ++
Sbjct: 115 ------------ISGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVK 162

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
             +Q+HG     G+ T   + NAL+  Y KCG    +  +F  + EKD VSW +M+  Y 
Sbjct: 163 WLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYT 222

Query: 413 R--------------------------HGFGK-----QALMVFESMKTIGVKPDEITMVG 441
           R                           GF K     +AL VF  M   GV P   T V 
Sbjct: 223 RASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVS 282

Query: 442 VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYT--CMIDLLGRAGRLEEAQDLMRNMP 499
           VL AC+   LI RG +    + +  S       Y    ++D+  + G ++ A++L   M 
Sbjct: 283 VLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMI 342

Query: 500 FEPPAASWGALLGASRIHGNTE 521
                 SW  L+     +G  E
Sbjct: 343 HVKDVVSWNTLITGFAQNGRGE 364



 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 119/250 (47%), Gaps = 24/250 (9%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLV----SWNV 57
           R    D A +VFN MP + +VS+ A+ISG+++N R   A ++F +M +  ++    ++  
Sbjct: 223 RASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVS 282

Query: 58  MLTGYVRNRRLGDARRLFDSMPQK-------DVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           +L        +G  +++   + +        +V  +NA++  YA+ G    A  +F  M 
Sbjct: 283 VLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMI 342

Query: 111 H-KNAISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKMLGAAR 165
           H K+ +SWN L+  +  NGR E++  +FD    S  +   +++  ++       ++ A  
Sbjct: 343 HVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGL 402

Query: 166 KLFDKMHVRDVVS-----WNTMISGYAQDGDMSQAKNLFDQSPHQ---DVFTWTAMVSGY 217
           +L D M  R  V      +  +I    +   + +A  L ++ P++    +  W A++ G 
Sbjct: 403 ELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGC 462

Query: 218 VQNGMLDEAR 227
             +G L+ AR
Sbjct: 463 RVHGNLELAR 472


>Medtr4g131300.1 | PPR containing plant-like protein | HC |
           chr4:54775340-54772788 | 20130731
          Length = 734

 Score =  339 bits (869), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 217/657 (33%), Positives = 321/657 (48%), Gaps = 100/657 (15%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQ--KDVVSWNAMLSGYAQNGYADE---AREVFYQMP 110
           N  L  Y +   L  A  LFDS+    KD VSWN++++ ++QN  +     A  +F +M 
Sbjct: 50  NTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMM 109

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFD-------------SKSDWELISWNCLMGGFVK 157
             N +  N    A+   G    A  L D             +    ++   + L+  + K
Sbjct: 110 RANNVIPN----AHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCK 165

Query: 158 RKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD----------------- 200
              +  ARKLFD+M  R+ VSW TMISGYA      +A  +F+                 
Sbjct: 166 TGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSV 225

Query: 201 -QSPHQDVFTWT---------------------AMVSGYVQNGMLDEARTFFDQMPQKNE 238
             +   DVF +T                     A+V+ Y + G LD+A   F+    KN 
Sbjct: 226 LSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNS 285

Query: 239 ISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG-------------------- 278
           I+++AMV GY Q    D A +LF  M S  V      + G                    
Sbjct: 286 ITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSF 345

Query: 279 -------------------YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
                              Y + G +A ARK F+ + Q D V W +II+GY Q G YE  
Sbjct: 346 AFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGG 405

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
           LN++ +++ +    N  T +  L  C+ +AAL+ GKQ+H +++K G++    +G+AL  M
Sbjct: 406 LNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAM 465

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y KCGS+ +   +F  +  +DV+SWN MI+G +++G G +AL +FE M   G+KPD +T 
Sbjct: 466 YTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTF 525

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
           V +LSACSH GL+DRG EYF  M  ++++ P  +HY CM+D+L RAG+L EA++ + +  
Sbjct: 526 VNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESAT 585

Query: 500 FEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGN 559
            +     W  LLGA + H N ELG  A E + ++    S  YVLLS++Y A G   +   
Sbjct: 586 VDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVER 645

Query: 560 MRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
           +R  M+  GV K  G SW+E++  +H F VGD  HP+ D I   LE L   M  EGY
Sbjct: 646 VRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRLELELLTKLMIDEGY 702


>Medtr4g094692.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:38735797-38738097 | 20130731
          Length = 766

 Score =  339 bits (869), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 210/683 (30%), Positives = 325/683 (47%), Gaps = 104/683 (15%)

Query: 29  SGYLRNARFSLARDLFDKMPQRD-LVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWN 87
           +G L+ A       L      RD LV  N ++  Y + +    AR++FD M +++V SW 
Sbjct: 79  NGSLKQANCIHGHVLKSGFGDRDNLVFLNHVVHAYSKCKDYDSARKVFDGMSERNVFSWT 138

Query: 88  AMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELIS 147
            M+    ++GY   A E+F  M  +      GLL        + ++C   DS    E++ 
Sbjct: 139 VMIVASNEHGYYRYALELFCMMLEQ------GLLLDGFAFSAVLQSCVGLDSVVFGEMVH 192

Query: 148 WNCLMGGFVKRKMLGAAR--------------KLFDKMHVRDVVSWNTMISGYAQDGDMS 193
              ++ GF+   ++G +                +F+ M   + VSWN MISG+  +G   
Sbjct: 193 AQVVVRGFLMHAVVGTSLLNLYAKLGMCECSVNVFNNMTDVNDVSWNAMISGFTSNGLYL 252

Query: 194 QAKNLFDQ------SP------------------------HQDVFTW---------TAMV 214
           QA +          SP                        H+  + W         TA++
Sbjct: 253 QAFDFLINMIENGVSPNKTTFLCISKAVGLLGDINRCHEVHRYAYEWGLDSNTSVGTALI 312

Query: 215 SGYVQNGMLDEARTFFDQMPQKNEIS--YNAMVAGYVQSNKMDMARELFEAMPSRNV--- 269
           + Y + G+L +AR  FD       ++  +NAM+ GY Q+     A E+F  M   +V   
Sbjct: 313 NMYSKCGVLCDARVLFDSKFANCLVNAPWNAMITGYSQAGCHLEALEMFTRMCQNDVKPD 372

Query: 270 -------------------------------------SSWNTMITGYGQNGDIAQARKLF 292
                                                S  N +   Y +   +    K+F
Sbjct: 373 LYTFCCVFNSIAGLKCLKSLKEAHGVALKCGFDAMEISVLNALADAYVKCESLEAGEKVF 432

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M ++D VSW  +++ Y Q   + +AL +F ++  +G + N  TFS  ++ C  +  LE
Sbjct: 433 YKMEKKDIVSWTTMVTAYCQCSEWGKALAIFSQMCNEGFAPNHFTFSSVITACGGLCLLE 492

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G+QIHG + K   +    + +AL+ MY KCG++ EA ++FE I   D V+W  +I+ YA
Sbjct: 493 YGQQIHGLICKASLDAESCIESALIDMYSKCGNLTEAKNIFERISNPDTVTWTAIISTYA 552

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           +HG  + AL +F  M+   VK + +T++ +L ACSH G+++ G E F  M   Y V P  
Sbjct: 553 QHGLVEDALQLFRKMEQSAVKANAVTLLCILFACSHGGMVEDGLEIFNQMEGTYGVVPEM 612

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVF- 531
           +HY C++DLLGR GRL+EA   +  MP EP    W  LLGA RIHGN ELGE AA+ +  
Sbjct: 613 EHYACVVDLLGRVGRLDEAVAFIDKMPIEPDEMVWQTLLGACRIHGNAELGETAAQKILS 672

Query: 532 -KMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVG 590
            + EP +S  YVLLSN Y  SG   D   +R  M++ G++K  GYSW+ V+ ++HKF   
Sbjct: 673 TQPEPEHSSTYVLLSNTYIESGLLEDGIGLRDVMKERGIRKEPGYSWISVRGEVHKFYAR 732

Query: 591 DCFHPEKDRIYAFLEELDLKMRR 613
           D  HP+KD+IY  LEEL  +++ 
Sbjct: 733 DQQHPQKDKIYTMLEELTRRIKH 755



 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 168/386 (43%), Gaps = 70/386 (18%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL---------VS 54
           G C+ ++ VFN M   + VS+NAMISG+  N  +  A D    M +  +         +S
Sbjct: 218 GMCECSVNVFNNMTDVNDVSWNAMISGFTSNGLYLQAFDFLINMIENGVSPNKTTFLCIS 277

Query: 55  WNVMLTG------------------------------YVRNRRLGDARRLFDSMPQKDVV 84
             V L G                              Y +   L DAR LFDS     +V
Sbjct: 278 KAVGLLGDINRCHEVHRYAYEWGLDSNTSVGTALINMYSKCGVLCDARVLFDSKFANCLV 337

Query: 85  S--WNAMLSGYAQNGYADEAREVFYQMPHK-------------NAISWNGLLAAYVHNGR 129
           +  WNAM++GY+Q G   EA E+F +M                N+I+    L +      
Sbjct: 338 NAPWNAMITGYSQAGCHLEALEMFTRMCQNDVKPDLYTFCCVFNSIAGLKCLKSLKEAHG 397

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
           +   C  FD+    E+   N L   +VK + L A  K+F KM  +D+VSW TM++ Y Q 
Sbjct: 398 VALKCG-FDA---MEISVLNALADAYVKCESLEAGEKVFYKMEKKDIVSWTTMVTAYCQC 453

Query: 190 GDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISY 241
            +  +A  +F Q  ++    + FT++++++      +L+  +     + + +        
Sbjct: 454 SEWGKALAIFSQMCNEGFAPNHFTFSSVITACGGLCLLEYGQQIHGLICKASLDAESCIE 513

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR--- 298
           +A++  Y +   +  A+ +FE + + +  +W  +I+ Y Q+G +  A +LF  M Q    
Sbjct: 514 SALIDMYSKCGNLTEAKNIFERISNPDTVTWTAIISTYAQHGLVEDALQLFRKMEQSAVK 573

Query: 299 -DCVSWAAIISGYAQTGHYEEALNMF 323
            + V+   I+   +  G  E+ L +F
Sbjct: 574 ANAVTLLCILFACSHGGMVEDGLEIF 599



 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 131/300 (43%), Gaps = 29/300 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA+   Y++         +F KM ++D+VSW  M+T Y +    G A  +F  M  +   
Sbjct: 413 NALADAYVKCESLEAGEKVFYKMEKKDIVSWTTMVTAYCQCSEWGKALAIFSQMCNEGFA 472

Query: 85  ----SWNAMLS---GYAQNGYADEAREVFYQ--MPHKNAISWNGLLAAYVHNGRIEEACR 135
               +++++++   G     Y  +   +  +  +  ++ I  + L+  Y   G + EA  
Sbjct: 473 PNHFTFSSVITACGGLCLLEYGQQIHGLICKASLDAESCIE-SALIDMYSKCGNLTEAKN 531

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGD 191
           +F+  S+ + ++W  ++  + +  ++  A +LF KM    V    V+   ++   +  G 
Sbjct: 532 IFERISNPDTVTWTAIISTYAQHGLVEDALQLFRKMEQSAVKANAVTLLCILFACSHGGM 591

Query: 192 MSQAKNLFDQ-------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-QKNEISYNA 243
           +     +F+Q        P  + +     + G V  G LDEA  F D+MP + +E+ +  
Sbjct: 592 VEDGLEIFNQMEGTYGVVPEMEHYACVVDLLGRV--GRLDEAVAFIDKMPIEPDEMVWQT 649

Query: 244 MVAGYVQSNKMDM----ARELFEAMPSRNVSSWNTMITG-YGQNGDIAQARKLFDMMPQR 298
           ++         ++    A+++    P    SS   +++  Y ++G +     L D+M +R
Sbjct: 650 LLGACRIHGNAELGETAAQKILSTQPEPEHSSTYVLLSNTYIESGLLEDGIGLRDVMKER 709



 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 26/190 (13%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGY--ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
           L +C    +L+    IHG V+K+G+         N ++  Y KC     A  VF+G+ E+
Sbjct: 73  LKSCEQNGSLKQANCIHGHVLKSGFGDRDNLVFLNHVVHAYSKCKDYDSARKVFDGMSER 132

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC-----------SH 448
           +V SW  MI     HG+ + AL +F  M   G+  D      VL +C            H
Sbjct: 133 NVFSWTVMIVASNEHGYYRYALELFCMMLEQGLLLDGFAFSAVLQSCVGLDSVVFGEMVH 192

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           A ++ RG    + M   ++V  +S     +++L  + G  E + ++  NM  +    SW 
Sbjct: 193 AQVVVRG----FLM---HAVVGTS-----LLNLYAKLGMCECSVNVFNNMT-DVNDVSWN 239

Query: 509 ALLGASRIHG 518
           A++     +G
Sbjct: 240 AMISGFTSNG 249


>Medtr4g068900.1 | PPR containing plant-like protein | HC |
           chr4:25858642-25860684 | 20130731
          Length = 680

 Score =  339 bits (869), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 206/648 (31%), Positives = 333/648 (51%), Gaps = 60/648 (9%)

Query: 20  SSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP 79
           S  + N +I  Y ++     A  LFD++P  +  SWN ++  Y++ + L  AR +FDS  
Sbjct: 26  SIFTCNQLIHLYSKHGLLKDAHKLFDEIPHPNAYSWNALIMAYIKAQNLTQARAVFDSAV 85

Query: 80  QKDVVSWNAMLSGYA-QNGYADEAREVFYQMPHKN---AISWNGLLAAYVHNGRIEEACR 135
            +D+VS+N+MLS Y   +GY  EA ++F +M        I    L      + ++   C 
Sbjct: 86  DRDLVSYNSMLSAYVGADGYETEAVDLFDKMQSARDMIGIDEFSLTTMVNFSAKLRLVCY 145

Query: 136 -------LFDSKSDWELISWNCLMGGFVKRKMLGAARKL---FDKMHVRDVVSWNTMISG 185
                  +  + SD    + + L+  + K  +   A  +   FD   V D+VS N M++ 
Sbjct: 146 GKQMHSYMVKTASDLSKFASSSLINMYSKCGLFRDACSVVSGFDG--VVDLVSKNAMVAA 203

Query: 186 YAQDGDMSQAKNLF-DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ--------- 235
             ++G+M  A N+F       D  +W  +++GY QNG +D+A   F +M +         
Sbjct: 204 CCREGEMDMALNVFWKNHELNDTVSWNTLIAGYAQNGYMDKALALFVKMTERGVRFDEHT 263

Query: 236 -------------------------KNEISYNAMVAG-----YVQSNKMDMARELFEAMP 265
                                    KN+ + N  ++      Y +   +  A  ++  + 
Sbjct: 264 LASVLSVCSGLKHLKLGKCVHAWVLKNDYNSNQFISSGIVDLYCKCGNIRYAELVYAGIG 323

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
            ++  + +++I GY   G++ +A++LFD + +R+ V W A+ SGYA++   EE   +F +
Sbjct: 324 IKSQFAVSSLIVGYSSQGEMMKAQRLFDSLLERNSVVWTALCSGYAKSQQCEEVFKLFRK 383

Query: 326 -IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
            + R+    +       L  CA  A L LGKQIH  +++   +    + +A++ MY KCG
Sbjct: 384 FVTREELIPDAMIIIRVLGACATQATLSLGKQIHTYILRMRLKMDKKLLSAMVDMYSKCG 443

Query: 385 SIGEANDVFEGI--EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
           +I  A   F+ +   ++DV+ +N MIAGYA HGF  +A+ +F  M    VKPD +T V +
Sbjct: 444 NIMYAEKSFQLMTDRDRDVILYNVMIAGYAHHGFENKAIQLFHDMLKKNVKPDAVTFVAL 503

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEP 502
           LSAC H GL+++G  +F SM +DYSV P   HY CM+D+ GRA +LE+A + MR +P + 
Sbjct: 504 LSACRHRGLVEQGEIFFISM-EDYSVLPEINHYACMVDMYGRANQLEKALEFMRKIPIQI 562

Query: 503 PAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRS 562
            A  WGA L A +I+ NT L  KA E + K+        V L+N+YA+ G W + G +R 
Sbjct: 563 DATIWGAFLNACQINNNTSLVNKAEEELLKIGADTGSRCVQLANVYASEGNWNEMGRIRK 622

Query: 563 RMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLK 610
           +MR    +K+TG SW+ V+N IH FT GD  H + D IY+ L  L+ K
Sbjct: 623 KMRVKEAKKLTGCSWIYVENGIHAFTSGDTSHAKADAIYSTLLCLNWK 670


>Medtr7g011100.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:2910760-2909010 | 20130731
          Length = 519

 Score =  338 bits (867), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/513 (37%), Positives = 288/513 (56%), Gaps = 55/513 (10%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           A +LF  +PQ D   +N M+ G +Q+     A  ++ +M H++ +  +     +V    +
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEM-HRHFVKGDSYTFPFV----L 115

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
           +   RLF     W  ++    + G V R   G+           + V  NT++  +A+ G
Sbjct: 116 KACTRLF-----W--VNTGSAVHGMVLRLGFGS-----------NAVVRNTLLVFHAKCG 157

Query: 191 DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQ 250
           D++ A +LFD S   DV                               +++++++AGY +
Sbjct: 158 DLNVATSLFDDSCKGDV-------------------------------VAWSSLIAGYAR 186

Query: 251 SNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGY 310
              + +AR+LF  MP R++ SWN MITGY + G++  AR LFD  P +D VSW A+I+GY
Sbjct: 187 RGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGY 246

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-ETG 369
              G  ++AL +F E+ R G   +  T    LS CAD+  LE GK++H +V++    +  
Sbjct: 247 VVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLS 306

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT 429
             +GNAL+ MY KCG+I E+ DVF  I +KDV+SWN++I G A HG GK++L +F+ M+ 
Sbjct: 307 TLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQR 366

Query: 430 IGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLE 489
             + P+EIT VGVL ACSHAG ID G +YF  M+ +Y + P+ +H  CM+D+LGRAG L+
Sbjct: 367 TKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLK 426

Query: 490 EAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYA 549
           EA   + +M  EP A  W  LL A ++HG+ EL + A E +F M   +SG YVL+SNLYA
Sbjct: 427 EAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYA 486

Query: 550 ASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
           + G W  A  +R  M D GV K+ G S+VE  N
Sbjct: 487 SRGEWDGAEKVRKLMDDSGVTKIRGSSFVEACN 519



 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 224/479 (46%), Gaps = 58/479 (12%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQ 95
           A  LF ++PQ D   +NVM+ G  ++     A  L+  M     + D  ++  +L    +
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120

Query: 96  NGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCL 151
             + +    V   +       NA+  N LL  +   G +  A  LFD     ++++W+ L
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180

Query: 152 MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
           + G+ +R  L  ARKLF++M  RD+VSWN MI+GY + G+M  A+ LFD++P +DV +W 
Sbjct: 181 IAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWN 240

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVA-----GYVQSNKMDMARELFE 262
           AM++GYV  G+  +A   F++M +     +E++  ++++     G +++ K   A+ +  
Sbjct: 241 AMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEI 300

Query: 263 AMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           +M   +    N +I  Y + G+I ++  +F  +  +D +SW ++I G A  GH +E+L++
Sbjct: 301 SMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSL 360

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F  ++R     N  TF   L  C+           H   +  GY+            YF 
Sbjct: 361 FKMMQRTKICPNEITFVGVLVACS-----------HAGEIDEGYK------------YFD 397

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
             S        E   E ++     M+    R G  K+A    +SMK   ++P+ I    +
Sbjct: 398 LMS-------SEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMK---IEPNAIIWRTL 447

Query: 443 LSACSHAG---LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           L+AC   G   L     E  +SM KD+     S  Y  M +L    G  + A+ + + M
Sbjct: 448 LAACKVHGDVELAKVANEKLFSMRKDH-----SGDYVLMSNLYASRGEWDGAEKVRKLM 501



 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 161/332 (48%), Gaps = 40/332 (12%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  + A  +F+   +   V+++++I+GY R     +AR LF++MP+RDLVSWNVM+TG
Sbjct: 155 KCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITG 214

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISW 117
           YV+   +  AR LFD  P KDVVSWNAM++GY   G + +A E+F +M       + ++ 
Sbjct: 215 YVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTL 274

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
             LL+A    G +E   ++     +  +   + L+G                        
Sbjct: 275 LSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLG------------------------ 310

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK- 236
             N +I  YA+ G++ ++ ++F     +DV +W +++ G   +G   E+ + F  M +  
Sbjct: 311 --NALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTK 368

Query: 237 ---NEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQA 288
              NEI++  ++     + ++D   + F+ M S      N+     M+   G+ G + +A
Sbjct: 369 ICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEA 428

Query: 289 RKLFDMMP-QRDCVSWAAIISGYAQTGHYEEA 319
            K  D M  + + + W  +++     G  E A
Sbjct: 429 AKFIDSMKIEPNAIIWRTLLAACKVHGDVELA 460



 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 25/317 (7%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           R G    A ++FN MP R  VS+N MI+GY++      AR LFD+ P +D+VSWN M+ G
Sbjct: 186 RRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAG 245

Query: 62  YVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYA-----QNGYADEAREVFYQMPHK 112
           YV       A  LF+ M +     D V+  ++LS  A     +NG    A+ +   M   
Sbjct: 246 YVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKL 305

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
           + +  N L+  Y   G I+E+  +F S +D ++ISWN ++ G         +  LF  M 
Sbjct: 306 STLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQ 365

Query: 173 VRDV----VSWNTMISGYAQDGDMSQAKNLFDQSPHQ-----DVFTWTAMVSGYVQNGML 223
              +    +++  ++   +  G++ +    FD    +     ++     MV    + G+L
Sbjct: 366 RTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLL 425

Query: 224 DEARTFFDQMP-QKNEISYNAMVAGYVQSNKMDMAR---ELFEAMPSRNVSSWNTMITGY 279
            EA  F D M  + N I +  ++A       +++A+   E   +M   +   +  M   Y
Sbjct: 426 KEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLY 485

Query: 280 GQNGD---IAQARKLFD 293
              G+     + RKL D
Sbjct: 486 ASRGEWDGAEKVRKLMD 502



 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 50/246 (20%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQRDLV 53
           ++ G  +SA  +F+  P +  VS+NAMI+GY+       A +LF++M        +  L+
Sbjct: 216 VKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLL 275

Query: 54  SW---------------------------------NVMLTGYVRNRRLGDARRLFDSMPQ 80
           S                                  N ++  Y +   + ++  +F S+  
Sbjct: 276 SLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITD 335

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRL 136
           KDV+SWN+++ G A +G+  E+  +F  M       N I++ G+L A  H G I+E  + 
Sbjct: 336 KDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKY 395

Query: 137 FDSKSDWELISWN-----CLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDG 190
           FD  S    I  N     C++    +  +L  A K  D M +  + + W T+++     G
Sbjct: 396 FDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHG 455

Query: 191 DMSQAK 196
           D+  AK
Sbjct: 456 DVELAK 461


>Medtr3g045450.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:14788174-14785760 | 20130731
          Length = 804

 Score =  337 bits (865), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 208/631 (32%), Positives = 329/631 (52%), Gaps = 91/631 (14%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +D+   N +L  Y       DA  +FD M ++D VSWN ++   +  G+ +E+   F +M
Sbjct: 167 KDVFVGNTLLMFYGNCGFFVDAMNVFDEMFERDKVSWNTVIGLCSDRGFHEESLCFFKEM 226

Query: 110 PHKNAI-----------------SWNGLLAAYVH--------NGRI-------------- 130
                +                 S N ++A  VH        +G +              
Sbjct: 227 VVAAPVVRPDLVTVVSVLPVCADSENVVMARIVHGYVFKVGLSGHVKVGNALVDVYGKCG 286

Query: 131 -EEACR-LFDSKSDWELISWNCLMGGFVKRKM----LGAARKLFDKMHVRDVVSWNTMIS 184
            EEAC+ +FD   +   +SWN ++ GF  R +    L A R + +     + V+ ++M+ 
Sbjct: 287 SEEACKKVFDEMDERNEVSWNAVITGFSFRGLSMDALDAFRSMINTGMRPNPVTISSMLP 346

Query: 185 GYAQDGDMSQAKNLFDQS----PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS 240
              + G       +   S       D+F   +++  Y ++G    A T F++M  +N +S
Sbjct: 347 VLGELGLFKLGMEVHGYSLRMGIESDIFIGNSLIDMYAKSGSSRVASTIFNKMGDRNIVS 406

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG---------------------- 278
           +N+MVA + Q+     A EL   M +   +  N   T                       
Sbjct: 407 WNSMVANFAQNRHHFAAVELLRQMQAHGENPNNVTFTNVLPACARLGFLNVGKEIHARII 466

Query: 279 -----------------YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALN 321
                            Y + G ++ AR +F++   +D VS+  +I GY+QT +  E+LN
Sbjct: 467 QTGCATDLFLSNALTDMYSKCGHLSLARNVFNV-SIKDKVSYNILIIGYSQTTNSSESLN 525

Query: 322 MFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYF 381
           +F E++  G + +  +F   +S CA +++++ GK+IHG +V+  + T  F  N+LL +Y 
Sbjct: 526 LFSEMRLSGMTPDIVSFIGIISACAHLSSIKQGKEIHGHLVRKLFHTHLFAANSLLDLYT 585

Query: 382 KCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEITMV 440
           KCG I  A  VF+ I+ KDV SWNTMI GY   G  + A+ +FE+MK  G V+ D ++ +
Sbjct: 586 KCGRIDLATKVFDRIQHKDVASWNTMILGYGMRGEFETAINLFEAMKEDGGVEYDSVSYI 645

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
            VLSACSH GLI++G +YF  M +DY++ P+  HY CM+DLLGRAG++EEA +L+R + F
Sbjct: 646 AVLSACSHGGLIEKGNKYFKQM-QDYNIEPTHTHYACMVDLLGRAGQIEEAANLIRGLSF 704

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
           EP A  WGALLGA RI+GN ELG  AAE +FK++P + G Y+LLSN+YA +GRW +A  +
Sbjct: 705 EPDANIWGALLGACRIYGNVELGHWAAEHLFKLKPDHCGYYILLSNMYAEAGRWDEANMV 764

Query: 561 RSRMRDVGVQKVTGYSWVEVQNKIHKFTVGD 591
           R  M+  G +K  G SWV++ +++H F VG+
Sbjct: 765 RELMKSRGAKKNPGCSWVQIGDQVHGFLVGE 795



 Score =  147 bits (372), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 180/369 (48%), Gaps = 29/369 (7%)

Query: 112 KNAISWNGLLAAY----------VHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKML 161
           K A  WN L+ AY          V+N  +    +  D    + L + +  +     R++ 
Sbjct: 98  KTAFLWNTLIRAYSIAGFFDGFGVYNTMVRSGVKPDDHTYPFVLKACSDYLKFDKGREVH 157

Query: 162 GAARKL-FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           G   K+ FDK    DV   NT++  Y   G    A N+FD+   +D  +W  ++      
Sbjct: 158 GVVFKVGFDK----DVFVGNTLLMFYGNCGFFVDAMNVFDEMFERDKVSWNTVIGLCSDR 213

Query: 221 GMLDEARTFFDQMP------QKNEISYNAMVAGYVQSNKMDMAR----ELFEAMPSRNVS 270
           G  +E+  FF +M       + + ++  +++     S  + MAR     +F+   S +V 
Sbjct: 214 GFHEESLCFFKEMVVAAPVVRPDLVTVVSVLPVCADSENVVMARIVHGYVFKVGLSGHVK 273

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
             N ++  YG+ G     +K+FD M +R+ VSW A+I+G++  G   +AL+ F  +   G
Sbjct: 274 VGNALVDVYGKCGSEEACKKVFDEMDERNEVSWNAVITGFSFRGLSMDALDAFRSMINTG 333

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
              N  T S  L    ++   +LG ++HG  ++ G E+  F+GN+L+ MY K GS   A+
Sbjct: 334 MRPNPVTISSMLPVLGELGLFKLGMEVHGYSLRMGIESDIFIGNSLIDMYAKSGSSRVAS 393

Query: 391 DVFEGIEEKDVVSWNTMIAGYA--RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
            +F  + ++++VSWN+M+A +A  RH F   A+ +   M+  G  P+ +T   VL AC+ 
Sbjct: 394 TIFNKMGDRNIVSWNSMVANFAQNRHHFA--AVELLRQMQAHGENPNNVTFTNVLPACAR 451

Query: 449 AGLIDRGTE 457
            G ++ G E
Sbjct: 452 LGFLNVGKE 460



 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 217/492 (44%), Gaps = 75/492 (15%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP---------------------- 48
           +VF+ M  R+ VS+NA+I+G+        A D F  M                       
Sbjct: 293 KVFDEMDERNEVSWNAVITGFSFRGLSMDALDAFRSMINTGMRPNPVTISSMLPVLGELG 352

Query: 49  -----------------QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLS 91
                            + D+   N ++  Y ++     A  +F+ M  +++VSWN+M++
Sbjct: 353 LFKLGMEVHGYSLRMGIESDIFIGNSLIDMYAKSGSSRVASTIFNKMGDRNIVSWNSMVA 412

Query: 92  GYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRI----EEACRLFDSKSDW 143
            +AQN +   A E+  QM     + N +++  +L A    G +    E   R+  +    
Sbjct: 413 NFAQNRHHFAAVELLRQMQAHGENPNNVTFTNVLPACARLGFLNVGKEIHARIIQTGCAT 472

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ-- 201
           +L   N L   + K   L  AR +F+ + ++D VS+N +I GY+Q  + S++ NLF +  
Sbjct: 473 DLFLSNALTDMYSKCGHLSLARNVFN-VSIKDKVSYNILIIGYSQTTNSSESLNLFSEMR 531

Query: 202 ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNK 253
               +P  D+ ++  ++S       + + +     + +K    +  + N+++  Y +  +
Sbjct: 532 LSGMTP--DIVSFIGIISACAHLSSIKQGKEIHGHLVRKLFHTHLFAANSLLDLYTKCGR 589

Query: 254 MDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-----QRDCVSWAAIIS 308
           +D+A ++F+ +  ++V+SWNTMI GYG  G+   A  LF+ M      + D VS+ A++S
Sbjct: 590 IDLATKVFDRIQHKDVASWNTMILGYGMRGEFETAINLFEAMKEDGGVEYDSVSYIAVLS 649

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
             +  G  E+    F +++        + ++C +        +E    +   +    +E 
Sbjct: 650 ACSHGGLIEKGNKYFKQMQDYNIEPTHTHYACMVDLLGRAGQIEEAANL---IRGLSFEP 706

Query: 369 GCFVGNALLGMYFKCGSIG----EANDVFEGIEEKDVVSWNTMIAG-YARHGFGKQALMV 423
              +  ALLG     G++      A  +F+   + D   +  +++  YA  G   +A MV
Sbjct: 707 DANIWGALLGACRIYGNVELGHWAAEHLFK--LKPDHCGYYILLSNMYAEAGRWDEANMV 764

Query: 424 FESMKTIGVKPD 435
            E MK+ G K +
Sbjct: 765 RELMKSRGAKKN 776



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 182/435 (41%), Gaps = 88/435 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----------- 50
           ++G    A  +FN M  R+ VS+N+M++ + +N     A +L  +M              
Sbjct: 385 KSGSSRVASTIFNKMGDRNIVSWNSMVANFAQNRHHFAAVELLRQMQAHGENPNNVTFTN 444

Query: 51  ----------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKD 82
                                       DL   N +   Y +   L  AR +F+ +  KD
Sbjct: 445 VLPACARLGFLNVGKEIHARIIQTGCATDLFLSNALTDMYSKCGHLSLARNVFN-VSIKD 503

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEAC---- 134
            VS+N ++ GY+Q   + E+  +F +M       + +S+ G+++A  H   I++      
Sbjct: 504 KVSYNILIIGYSQTTNSSESLNLFSEMRLSGMTPDIVSFIGIISACAHLSSIKQGKEIHG 563

Query: 135 ----RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
               +LF +     L + N L+  + K   +  A K+FD++  +DV SWNTMI GY   G
Sbjct: 564 HLVRKLFHT----HLFAANSLLDLYTKCGRIDLATKVFDRIQHKDVASWNTMILGYGMRG 619

Query: 191 DMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISY 241
           +   A NLF     D     D  ++ A++S     G++++   +F QM   N       Y
Sbjct: 620 EFETAINLFEAMKEDGGVEYDSVSYIAVLSACSHGGLIEKGNKYFKQMQDYNIEPTHTHY 679

Query: 242 NAMVAGYVQSNKMDMARELFEAM---PSRNVSSWNTMITGYGQNGDIA----QARKLFDM 294
             MV    ++ +++ A  L   +   P  N+  W  ++      G++      A  LF +
Sbjct: 680 ACMVDLLGRAGQIEEAANLIRGLSFEPDANI--WGALLGACRIYGNVELGHWAAEHLFKL 737

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEI-KRDGESLNRSTFSCALSTCADIAALEL 353
            P   C  +  + + YA+ G ++EA NM  E+ K  G   N              + +++
Sbjct: 738 KPDH-CGYYILLSNMYAEAGRWDEA-NMVRELMKSRGAKKNPGC-----------SWVQI 784

Query: 354 GKQIHGQVVKTGYET 368
           G Q+HG +V    E+
Sbjct: 785 GDQVHGFLVGEKIES 799


>Medtr6g060470.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr6:20800229-20798334 | 20130731
          Length = 403

 Score =  336 bits (861), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 182/456 (39%), Positives = 263/456 (57%), Gaps = 55/456 (12%)

Query: 254 MDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQT 313
           MD AR +F++   R++ SWNTMI  Y  +G++ QA+ LFD M +RD VSW+ II+GY Q 
Sbjct: 1   MDDARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQV 60

Query: 314 GHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
           G + E L  F  + +     N  T   AL       A+++  ++                
Sbjct: 61  GCFMEDLEFFHNMLQSEVKPNEYTMVSAL-------AIKMNDRLLA-------------- 99

Query: 374 NALLGMYFKCGSIGEANDVF-EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            +L+ MY KCG I  A+ VF E   ++ V  WN MI G+A HG  ++A+ +FE MK   V
Sbjct: 100 -SLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERV 158

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
            P+++T + +L+ACSH  +I  G  YF  M+ DY + P  +HY CM+DLL R+  L+EA+
Sbjct: 159 SPNKVTFIALLNACSHGYMIKEGKSYFELMSSDYGINPEIEHYGCMVDLLSRSELLKEAE 218

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
           +++ +MP  P  A WGALL A RI+ + E G +   ++ +++P++ G  VLL N+Y+ SG
Sbjct: 219 EMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYSTSG 278

Query: 553 RWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
           RW +A  +R R                  N+I +             IY+FLEE+  K++
Sbjct: 279 RWNEARILRER------------------NEIRE-------------IYSFLEEMIRKLK 307

Query: 613 REGYVSSTKLVLHDV-EEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCH 671
             GYV     VL D  +EE+KE  L  HSEKLA+AFG++    G PI ++KNLRVC DCH
Sbjct: 308 IAGYVPELGEVLLDFDDEEDKETTLSVHSEKLAIAFGLMNTAPGTPICIVKNLRVCGDCH 367

Query: 672 NAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
            AIK ISK+  R+II+RD  R+HHF +G+CSC DYW
Sbjct: 368 EAIKFISKVYDRVIIVRDRMRYHHFKDGVCSCKDYW 403



 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 103/203 (50%), Gaps = 26/203 (12%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
           AR +FD    RD+ SWNTMI  Y   G+M QAKNLFD+   +DV +W+ +++GYVQ G  
Sbjct: 4   ARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQVGCF 63

Query: 224 DEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNG 283
            E   FF  M Q             V+ N+  M   L   M  R ++S   +I  Y + G
Sbjct: 64  MEDLEFFHNMLQSE-----------VKPNEYTMVSALAIKMNDRLLAS---LIDMYAKCG 109

Query: 284 DIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           +I  A  +F +   +R    W A+I G+A  G  EEA+++F ++K +  S N+ TF   L
Sbjct: 110 EIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERVSPNKVTFIALL 169

Query: 343 STCADIAALELGKQIHGQVVKTG 365
           + C+           HG ++K G
Sbjct: 170 NACS-----------HGYMIKEG 181



 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 129/273 (47%), Gaps = 29/273 (10%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYA 99
           AR++FD    RDL SWN M+  YV +  +  A+ LFD M ++DVVSW+ +++GY Q G  
Sbjct: 4   ARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQVGCF 63

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRK 159
            E  E F+ M           L + V          L    +D  L S   L+  + K  
Sbjct: 64  MEDLEFFHNM-----------LQSEVKPNEYTMVSALAIKMNDRLLAS---LIDMYAKCG 109

Query: 160 MLGAARKLFDKMHV-RDVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQDVFTWTA 212
            + +A  +F +  V R V  WN MI G+A  G   +A +LF+Q      SP++   T+ A
Sbjct: 110 EIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERVSPNK--VTFIA 167

Query: 213 MVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMP-S 266
           +++      M+ E +++F+ M     I+     Y  MV    +S  +  A E+  +MP +
Sbjct: 168 LLNACSHGYMIKEGKSYFELMSSDYGINPEIEHYGCMVDLLSRSELLKEAEEMILSMPMA 227

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
            +V+ W  ++       D+ +  ++  ++ + D
Sbjct: 228 PDVAIWGALLNACRIYKDMERGYRIGRIIKEID 260



 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 146/319 (45%), Gaps = 43/319 (13%)

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
           +++A  +FDS  D +L SWN ++G +V    +  A+ LFD+MH RDVVSW+T+I+GY Q 
Sbjct: 1   MDDARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQV 60

Query: 190 G----DMSQAKNLFDQSPHQDVFTWT-------------AMVSGYVQNGMLDEARTFFDQ 232
           G    D+    N+       + +T               +++  Y + G +D A + F +
Sbjct: 61  GCFMEDLEFFHNMLQSEVKPNEYTMVSALAIKMNDRLLASLIDMYAKCGEIDSASSVFHE 120

Query: 233 MPQKNEI-SYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGYGQNGDIAQ 287
              K ++  +NAM+ G+    K + A  LFE M    VS    ++  ++        I +
Sbjct: 121 HKVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERVSPNKVTFIALLNACSHGYMIKE 180

Query: 288 ARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
            +  F++M     ++     +  ++   +++   +EA  M + +     + + + +   L
Sbjct: 181 GKSYFELMSSDYGINPEIEHYGCMVDLLSRSELLKEAEEMILSMPM---APDVAIWGALL 237

Query: 343 STCADIAALELGKQIHGQVVKT--GYETGCFVGNALLG-MYFKCGSIGEANDVFEGIEEK 399
           + C     +E G +I G+++K       GC   N LLG +Y   G   EA  + E  E +
Sbjct: 238 NACRIYKDMERGYRI-GRIIKEIDPNHIGC---NVLLGNIYSTSGRWNEARILRERNEIR 293

Query: 400 DVVSW------NTMIAGYA 412
           ++ S+         IAGY 
Sbjct: 294 EIYSFLEEMIRKLKIAGYV 312



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 109/238 (45%), Gaps = 28/238 (11%)

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRK 159
           D+AR VF     ++  SWN ++  YV +G + +A  LFD   + +++SW+ ++ G+V+  
Sbjct: 2   DDARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQVG 61

Query: 160 MLGAARKLFDKMHVRDV------------VSWN-----TMISGYAQDGDMSQAKNLF-DQ 201
                 + F  M   +V            +  N     ++I  YA+ G++  A ++F + 
Sbjct: 62  CFMEDLEFFHNMLQSEVKPNEYTMVSALAIKMNDRLLASLIDMYAKCGEIDSASSVFHEH 121

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMA 257
              + V+ W AM+ G+  +G  +EA + F+QM       N++++ A++        +   
Sbjct: 122 KVKRKVWPWNAMIGGFAMHGKPEEAISLFEQMKVERVSPNKVTFIALLNACSHGYMIKEG 181

Query: 258 RELFEAMPS-----RNVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISG 309
           +  FE M S       +  +  M+    ++  + +A ++   MP   D   W A+++ 
Sbjct: 182 KSYFELMSSDYGINPEIEHYGCMVDLLSRSELLKEAEEMILSMPMAPDVAIWGALLNA 239



 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 18/150 (12%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNR 66
           D A  VF++   R   S+N MI  Y+ +     A++LFD+M +RD+VSW+ ++ GYV+  
Sbjct: 2   DDARNVFDSAIDRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQVG 61

Query: 67  RLGDARRLFDSMPQKDV------------VSWN-----AMLSGYAQNGYADEAREVFYQM 109
              +    F +M Q +V            +  N     +++  YA+ G  D A  VF++ 
Sbjct: 62  CFMEDLEFFHNMLQSEVKPNEYTMVSALAIKMNDRLLASLIDMYAKCGEIDSASSVFHEH 121

Query: 110 PHKNAI-SWNGLLAAYVHNGRIEEACRLFD 138
             K  +  WN ++  +  +G+ EEA  LF+
Sbjct: 122 KVKRKVWPWNAMIGGFAMHGKPEEAISLFE 151


>Medtr7g056073.1 | basic helix loop helix protein, putative | HC |
           chr7:19429810-19428206 | 20130731
          Length = 534

 Score =  335 bits (860), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 156/422 (36%), Positives = 255/422 (60%), Gaps = 3/422 (0%)

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
           VF  T +V  Y   G + +AR  FD+M  ++  ++  M++ YV++N ++ A  LF  MP 
Sbjct: 113 VFVQTTLVEFYSSLGYVCDARKVFDEMSARDVYAWTTMISAYVRNNDVESAEILFVEMPE 172

Query: 267 -RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
            +N ++WN +I GY + G+I +    F  +P +D +SW  ++S Y +   Y E + +F E
Sbjct: 173 GKNTATWNAVIDGYAKLGNIERVEFFFKEIPSKDIISWTTLMSCYLKNKRYGEVVKLFHE 232

Query: 326 IKRDGESL-NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           +  +G+ + +    +  +S CA + AL  GK++H  ++ +G+    ++G++L+ MY KCG
Sbjct: 233 MVNEGKVVPDEVAITTVISACAHLGALGFGKEVHFYLMVSGFGIDVYIGSSLIDMYAKCG 292

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
           S+  +  VF  ++EK++  WN+MI G A HG+ K+AL +F  M+  G++P+ +T V VL+
Sbjct: 293 SLERSLLVFYKLKEKNLFCWNSMIDGLAAHGYAKEALRMFAEMEREGIRPNRVTFVSVLT 352

Query: 445 ACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPA 504
           AC+HAG I  G  +F SM +DY ++P  +HY CM+DLL + G LE+A +++R M FEP +
Sbjct: 353 ACTHAGFIQEGRRFFTSMIEDYCISPQVEHYGCMVDLLSKGGLLEDALEMIRGMRFEPNS 412

Query: 505 ASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRM 564
             WGALL   ++H N E+       +  +EP NSG Y LL N+YA   RW+D   +R+ M
Sbjct: 413 FIWGALLNGCKVHRNLEIARVTVRNLMILEPSNSGHYSLLVNMYAEVNRWSDVAKIRTEM 472

Query: 565 RDVGVQK-VTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
           +D+GV+K   G SW+E+  +IH F   D  HP   +++  L ELD ++R  G+V     V
Sbjct: 473 KDLGVEKRCPGSSWIEINKEIHVFAASDKCHPSYGQVHLLLVELDEQLRLAGFVPEMGSV 532

Query: 624 LH 625
           L+
Sbjct: 533 LY 534



 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 165/363 (45%), Gaps = 44/363 (12%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ-KDVVSWNAMLSGYAQNGY 98
           AR +FD+M  RD+ +W  M++ YVRN  +  A  LF  MP+ K+  +WNA++ GYA+ G 
Sbjct: 132 ARKVFDEMSARDVYAWTTMISAYVRNNDVESAEILFVEMPEGKNTATWNAVIDGYAKLGN 191

Query: 99  ADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF-----DSKSDWELISWNCLMG 153
            +     F ++P K+ ISW  L++ Y+ N R  E  +LF     + K   + ++   ++ 
Sbjct: 192 IERVEFFFKEIPSKDIISWTTLMSCYLKNKRYGEVVKLFHEMVNEGKVVPDEVAITTVIS 251

Query: 154 GFVKRKMLGAARKLFDKMHVR----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFT 209
                  LG  +++   + V     DV   +++I  YA+ G + ++  +F +   +++F 
Sbjct: 252 ACAHLGALGFGKEVHFYLMVSGFGIDVYIGSSLIDMYAKCGSLERSLLVFYKLKEKNLFC 311

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM- 264
           W +M+ G   +G   EA   F +M ++    N +++ +++     +  +   R  F +M 
Sbjct: 312 WNSMIDGLAAHGYAKEALRMFAEMEREGIRPNRVTFVSVLTACTHAGFIQEGRRFFTSMI 371

Query: 265 ----PSRNVSSWNTMITGYGQNGDIAQARKLF-DMMPQRDCVSWAAIISGY--------- 310
                S  V  +  M+    + G +  A ++   M  + +   W A+++G          
Sbjct: 372 EDYCISPQVEHYGCMVDLLSKGGLLEDALEMIRGMRFEPNSFIWGALLNGCKVHRNLEIA 431

Query: 311 ------------AQTGHYEEALNMFIEIKRDGESLNRSTFSCALST---CADIAALELGK 355
                       + +GHY   +NM+ E+ R  +     T    L     C   + +E+ K
Sbjct: 432 RVTVRNLMILEPSNSGHYSLLVNMYAEVNRWSDVAKIRTEMKDLGVEKRCPGSSWIEINK 491

Query: 356 QIH 358
           +IH
Sbjct: 492 EIH 494



 Score =  114 bits (285), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 126/272 (46%), Gaps = 19/272 (6%)

Query: 70  DARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH-KNAISWNGLLAAYVHNG 128
           DAR++FD M  +DV +W  M+S Y +N   + A  +F +MP  KN  +WN ++  Y   G
Sbjct: 131 DARKVFDEMSARDVYAWTTMISAYVRNNDVESAEILFVEMPEGKNTATWNAVIDGYAKLG 190

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM-----HVRDVVSWNTMI 183
            IE     F      ++ISW  LM  ++K K  G   KLF +M      V D V+  T+I
Sbjct: 191 NIERVEFFFKEIPSKDIISWTTLMSCYLKNKRYGEVVKLFHEMVNEGKVVPDEVAITTVI 250

Query: 184 SGYAQDGDMSQAKN----LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
           S  A  G +   K     L       DV+  ++++  Y + G L+ +   F ++ +KN  
Sbjct: 251 SACAHLGALGFGKEVHFYLMVSGFGIDVYIGSSLIDMYAKCGSLERSLLVFYKLKEKNLF 310

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMM 295
            +N+M+ G         A  +F  M       N  ++ +++T     G I + R+ F  M
Sbjct: 311 CWNSMIDGLAAHGYAKEALRMFAEMEREGIRPNRVTFVSVLTACTHAGFIQEGRRFFTSM 370

Query: 296 PQRDCVS-----WAAIISGYAQTGHYEEALNM 322
            +  C+S     +  ++   ++ G  E+AL M
Sbjct: 371 IEDYCISPQVEHYGCMVDLLSKGGLLEDALEM 402



 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 166/373 (44%), Gaps = 49/373 (13%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRD----------LVSWNVM 58
           A+  F  + + +++ YNA+I   + +   + A   +  M +            L+    +
Sbjct: 31  AISTFTQITKPNTLVYNALIKACVHSHSSNQALLHYIHMLRSSVIPSSYSFSSLIKACTL 90

Query: 59  LTGYVRNRRL-GDARRL-FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS 116
           LT  V  + L G   +  FDS     V     ++  Y+  GY  +AR+VF +M  ++  +
Sbjct: 91  LTDAVNGKTLHGHVWKYGFDS----HVFVQTTLVEFYSSLGYVCDARKVFDEMSARDVYA 146

Query: 117 WNGLLAAYVHNGRIEEACRLFDSKSDWE-LISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
           W  +++AYV N  +E A  LF    + +   +WN ++ G+ K   +      F ++  +D
Sbjct: 147 WTTMISAYVRNNDVESAEILFVEMPEGKNTATWNAVIDGYAKLGNIERVEFFFKEIPSKD 206

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-----DVFTWTAMVSGYVQNGMLDEARTFF 230
           ++SW T++S Y ++    +   LF +  ++     D    T ++S     G L   +   
Sbjct: 207 IISWTTLMSCYLKNKRYGEVVKLFHEMVNEGKVVPDEVAITTVISACAHLGALGFGK--- 263

Query: 231 DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
                  E+ +  MV+G+                   +V   +++I  Y + G + ++  
Sbjct: 264 -------EVHFYLMVSGF-----------------GIDVYIGSSLIDMYAKCGSLERSLL 299

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +F  + +++   W ++I G A  G+ +EAL MF E++R+G   NR TF   L+ C     
Sbjct: 300 VFYKLKEKNLFCWNSMIDGLAAHGYAKEALRMFAEMEREGIRPNRVTFVSVLTACTHAGF 359

Query: 351 LELGKQIHGQVVK 363
           ++ G++    +++
Sbjct: 360 IQEGRRFFTSMIE 372



 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 4/177 (2%)

Query: 284 DIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALS 343
           +I  A   F  + + + + + A+I     +    +AL  +I + R     +  +FS  + 
Sbjct: 27  NINFAISTFTQITKPNTLVYNALIKACVHSHSSNQALLHYIHMLRSSVIPSSYSFSSLIK 86

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
            C  +     GK +HG V K G+++  FV   L+  Y   G + +A  VF+ +  +DV +
Sbjct: 87  ACTLLTDAVNGKTLHGHVWKYGFDSHVFVQTTLVEFYSSLGYVCDARKVFDEMSARDVYA 146

Query: 404 WNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY 460
           W TMI+ Y R+   + A ++F  M       +  T   V+   +  G I+R  E+F+
Sbjct: 147 WTTMISAYVRNNDVESAEILFVEMPE---GKNTATWNAVIDGYAKLGNIER-VEFFF 199


>Medtr7g005870.1 | PPR containing plant-like protein | HC |
           chr7:378521-375734 | 20130731
          Length = 601

 Score =  335 bits (858), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/417 (39%), Positives = 254/417 (60%), Gaps = 2/417 (0%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D+    +++  Y + GD+  A+ +FD+   + + +WTA++ GY + G + EAR  FD M 
Sbjct: 157 DLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMV 216

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
            ++  ++N M+ GYV+  +MD+AR+LF+ M  +NV SW +M+ GY ++GD+ +AR LFD 
Sbjct: 217 DRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDC 276

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADIAALEL 353
           MP+++ +SW A+I GY Q G   +AL +F E++ + +  +N  T    L   AD++AL+L
Sbjct: 277 MPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDL 336

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G  +HG V +   +    V NAL+ MY KCG IG+A  VFE + EKD  SWN +I GY  
Sbjct: 337 GGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGV 396

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +G  K+AL VF  M   G +P++ITM  VLSAC+H GL++ G   F +M + + + P  +
Sbjct: 397 NGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMER-FGIVPQIE 455

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY CMIDLLGRAGRL+EA+ L++ MP++P      + L A     +    E+  ++  KM
Sbjct: 456 HYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACCYFEDVSRAERILKVAVKM 515

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVG 590
           E   +G YV+L NLYA   RWAD  +++  M+  G  K   +S +EV  +  +F  G
Sbjct: 516 EKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNKEVAWSVIEVDGRFREFVAG 572



 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 110/398 (27%), Positives = 185/398 (46%), Gaps = 73/398 (18%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           D+    +++  Y + G    AR+VF +M  ++ +SW  ++  Y   G + EA +LFD   
Sbjct: 157 DLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMV 216

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ 201
           D ++ ++N ++ G+VK   +  AR LFDKM V++V+SW +M+ GY++DGD+ +A+ LFD 
Sbjct: 217 DRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDC 276

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM----------------- 244
            P ++V +W AM+ GY QNG   +A   F +M    ++  N +                 
Sbjct: 277 MPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDL 336

Query: 245 ---VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
              V G+VQ N++D            +V   N ++  Y + G+I +A+ +F+ M ++D  
Sbjct: 337 GGWVHGFVQRNQLD-----------GSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTG 385

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           SW A+I+GY   G  +EAL +F  + R+G   N+ T +  LS C                
Sbjct: 386 SWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACN--------------- 430

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS----WNTMIAGYARHGFG 417
                                CG + E    FE +E   +V     +  MI    R G  
Sbjct: 431 --------------------HCGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLLGRAGRL 470

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
            +A  + ++M      P+EI +   L AC +   + R 
Sbjct: 471 DEAEKLIQAMP---YDPNEIILTSFLFACCYFEDVSRA 505



 Score =  166 bits (420), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 162/316 (51%), Gaps = 39/316 (12%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A +VF+ M  RS VS+ A+I GY R      AR LFD M  RD+ ++NVM+ GYV+  R+
Sbjct: 177 ARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRM 236

Query: 69  GDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNG 128
             AR LFD M  K+V+SW +M+ GY+++G  DEAR +F  MP KN +SWN ++  Y  NG
Sbjct: 237 DLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNG 296

Query: 129 RIEEACRLF--------------------DSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           R  +A +LF                     + +D   +     + GFV+R  L  +    
Sbjct: 297 RSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGS---- 352

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
             +HV      N ++  YA+ G++ +AK +F++   +D  +W A+++GY  NG   EA  
Sbjct: 353 --VHV-----CNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALE 405

Query: 229 FFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYG 280
            F  M ++    N+I+  ++++       ++  R  FEAM        +  +  MI   G
Sbjct: 406 VFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLLG 465

Query: 281 QNGDIAQARKLFDMMP 296
           + G + +A KL   MP
Sbjct: 466 RAGRLDEAEKLIQAMP 481



 Score = 79.7 bits (195), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 13/230 (5%)

Query: 285 IAQARKLFDMMPQRDCVSWAA--IISGYAQTGHYEEALNMFIEIKRDGESLNRS-TFSCA 341
           +  AR  F+  P   C  +    II+ +     +     ++ +  +D      S TF+  
Sbjct: 70  VQHARLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLI 129

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L  C+   A   G QIHG V+K  +    +VG +L+ MY K G +G A  VF+ +  + +
Sbjct: 130 LKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSL 189

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
           VSW  +I GYAR G   +A  +F+ M    V    + + G +      G +D   + F  
Sbjct: 190 VSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVK----MGRMDLARDLFDK 245

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           M     ++     +T M+      G ++EA+ L   MP E    SW A++
Sbjct: 246 MRVKNVIS-----WTSMVHGYSEDGDVDEARFLFDCMP-EKNVLSWNAMI 289



 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 48/252 (19%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G  D A  +F+ M  ++ +S+ +M+ GY  +     AR LFD MP+++++SWN M+ 
Sbjct: 231 VKMGRMDLARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIR 290

Query: 61  GYVRNRRLGDARRLFDSM-----------------------PQKDVVSW----------- 86
           GY +N R  DA +LF  M                          D+  W           
Sbjct: 291 GYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLD 350

Query: 87  ------NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS- 139
                 NA++  YA+ G   +A+ VF +M  K+  SWN L+  Y  NG  +EA  +F   
Sbjct: 351 GSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMM 410

Query: 140 -KSDWE--LISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGDM 192
            +  +E   I+   ++       ++   R+ F+ M     V  +  +  MI    + G +
Sbjct: 411 LREGFEPNQITMTSVLSACNHCGLVEEGRRCFEAMERFGIVPQIEHYGCMIDLLGRAGRL 470

Query: 193 SQAKNLFDQSPH 204
            +A+ L    P+
Sbjct: 471 DEAEKLIQAMPY 482


>Medtr8g063450.1 | PPR containing plant-like protein | HC |
           chr8:26602939-26605163 | 20130731
          Length = 699

 Score =  334 bits (856), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 208/661 (31%), Positives = 327/661 (49%), Gaps = 76/661 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----- 79
           N +I+ Y + A+  LA  LFDKMPQRD VSWN +++GYV    L    +L ++M      
Sbjct: 38  NNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNAMRVSGHA 97

Query: 80  ----------------------------------QKDVVSWNAMLSGYAQNGYADEAREV 105
                                              ++V S +A+L  YA+ G  D+A  V
Sbjct: 98  FDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVDDALVV 157

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS-------DWELISWNCLMGG--FV 156
           F  MP  N +SWN L+A Y   G ++ A  L   +        D  +     L+ G  F 
Sbjct: 158 FRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTLLDGVRFY 217

Query: 157 KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQS---PHQDVFTWTAM 213
              M    + +   +   ++V  N +I+ Y++   +  A+ +F  +     +D+ TW +M
Sbjct: 218 SLVMQLHCKIVKHGLEAFNIVC-NAIITAYSECCSLQDAERVFVGAVTVTCRDLVTWNSM 276

Query: 214 VSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-- 267
           ++ Y+ +   + A   F +M     + ++ SY  +++G            L   +  R  
Sbjct: 277 LAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGESLHGLVIKRGA 336

Query: 268 --NVSSWNTMITGY--GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
             +V   N +I  Y    N  +  A ++F  M  +DC +W ++++GY Q G  E+AL +F
Sbjct: 337 EVSVPVSNALIAMYLGFDNRCMEDALRIFFSMDVKDCCTWNSVLAGYVQVGRSEDALRLF 396

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
           ++++     ++  TFS  +  C+D+A L+LG+Q+H   +K G++T  +VG          
Sbjct: 397 VQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSLKVGFDTNKYVGK--------- 447

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVL 443
               +A   FE     + + WN++I GYA+HG G  AL +F  M+   VKPD IT V VL
Sbjct: 448 ----DAKKCFETTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKPDHITFVAVL 503

Query: 444 SACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
           +ACSH GL++ G +   SM  D+ +    +HY C +DL GRAG LEE + L+  MPFEP 
Sbjct: 504 TACSHNGLVEEGRKIIQSMESDFGIPLRMEHYACAVDLYGRAGYLEEGKALVETMPFEPD 563

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSR 563
           A     LLGA R  GN EL    A+M+  +EP +   YVLLS+LY     W +  ++   
Sbjct: 564 AMVLRTLLGACRSCGNIELASHVAKMLLVLEPEDHSTYVLLSDLYGRLKMWDEKASVTRL 623

Query: 564 MRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEEL-DLKMRREGYVSSTKL 622
           MR+ GV+KV G+SW+EV+NK+H F   D  HP+   IY  L +L +  M  + +V  T L
Sbjct: 624 MRERGVKKVPGWSWIEVKNKVHAFNAEDHSHPQSKEIYELLLQLKEGIMLFDNFVGQTSL 683

Query: 623 V 623
           +
Sbjct: 684 L 684



 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 153/307 (49%), Gaps = 22/307 (7%)

Query: 173 VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQ 232
           + D+ + N +I+ Y++   +  A  LFD+ P +D  +W A++SGYV    LD      + 
Sbjct: 31  ISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNA 90

Query: 233 MPQKNEI----SYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMITGYGQNGD 284
           M          ++ + + G  ++ ++++ ++L   M     + NV S + ++  Y + G 
Sbjct: 91  MRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGR 150

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           +  A  +F  MP+ + VSW  +I+GY++ G  + A  +    + +G  ++  T S  L+ 
Sbjct: 151 VDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTL 210

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG---IEEKDV 401
              +    L  Q+H ++VK G E    V NA++  Y +C S+ +A  VF G   +  +D+
Sbjct: 211 LDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVGAVTVTCRDL 270

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS-----------HAG 450
           V+WN+M+A Y  H     A  VF  M++ G +PD+ +  GV+S CS           H  
Sbjct: 271 VTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGESLHGL 330

Query: 451 LIDRGTE 457
           +I RG E
Sbjct: 331 VIKRGAE 337



 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 171/407 (42%), Gaps = 83/407 (20%)

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
           C    S S  +L + N L+  + K   L  A +LFDKM  RD VSWN +ISGY    D+ 
Sbjct: 23  CLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLD 82

Query: 194 QAKNLFD------------------------------QSPH---------QDVFTWTAMV 214
               L +                              Q  H         ++VF+ +A++
Sbjct: 83  STWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALL 142

Query: 215 SGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS---- 270
             Y + G +D+A   F  MP+ N +S+N ++AGY +   +DMA  L        V     
Sbjct: 143 DMYAKCGRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDG 202

Query: 271 -----------------------------------SWNTMITGYGQNGDIAQARKLF--- 292
                                                N +IT Y +   +  A ++F   
Sbjct: 203 TVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVGA 262

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             +  RD V+W ++++ Y        A ++FIE++  G   +  +++  +S C+      
Sbjct: 263 VTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKS 322

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMY--FKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
            G+ +HG V+K G E    V NAL+ MY  F    + +A  +F  ++ KD  +WN+++AG
Sbjct: 323 RGESLHGLVIKRGAEVSVPVSNALIAMYLGFDNRCMEDALRIFFSMDVKDCCTWNSVLAG 382

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           Y + G  + AL +F  ++++ V+ D+ T   V+  CS    +  G +
Sbjct: 383 YVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQ 429



 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 31/168 (18%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNAR-------FSLARDLFDKMPQ---------- 49
           + ALR+F +M  +   ++N++++GY++  R       F   R LF ++            
Sbjct: 359 EDALRIFFSMDVKDCCTWNSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCC 418

Query: 50  RDLVSWNV--------MLTGYVRNRRLG-DARRLFDSMPQKDVVSWNAMLSGYAQNGYAD 100
            DL +  +        +  G+  N+ +G DA++ F++    + + WN+++ GYAQ+G  +
Sbjct: 419 SDLATLQLGQQVHVLSLKVGFDTNKYVGKDAKKCFETTSNDNAIIWNSIIFGYAQHGQGN 478

Query: 101 EAREVFYQMPHKNA----ISWNGLLAAYVHNGRIEEACRLFDS-KSDW 143
            A E+FY M  K      I++  +L A  HNG +EE  ++  S +SD+
Sbjct: 479 IALELFYLMREKKVKPDHITFVAVLTACSHNGLVEEGRKIIQSMESDF 526



 Score = 61.2 bits (147), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 358 HGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFG 417
           H   +K+G  +  +  N L+  Y KC  +  A  +F+ + ++D VSWN +I+GY      
Sbjct: 22  HCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADL 81

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC 477
                +  +M+  G   D  T    L   + A  ++ G +  +S+     +  +    + 
Sbjct: 82  DSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQ-LHSVMIKMRLNENVFSGSA 140

Query: 478 MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL-GASRI 516
           ++D+  + GR+++A  + R MP E    SW  L+ G SR+
Sbjct: 141 LLDMYAKCGRVDDALVVFRYMP-ECNYVSWNTLIAGYSRV 179


>Medtr1g084570.1 | PPR containing plant-like protein | HC |
           chr1:37638715-37636265 | 20130731
          Length = 606

 Score =  333 bits (855), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 310/582 (53%), Gaps = 32/582 (5%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           ++  Y       +A  LFD MP +DV++W +M++GY    +   A  VF  M  ++ +  
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNML-RDGVKP 105

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV 177
           N    + V      +AC     KS   L+    + G  +K    G++           + 
Sbjct: 106 NAFTVSAVL-----KAC-----KSLKALLCGKLVHGLAIKIGTQGSS-----------IY 144

Query: 178 SWNTMISGYAQDGD-MSQAKNLFDQSPHQDVFTWTAMVSGYVQN----GMLDEARTFFDQ 232
             N ++  YA   D M  A+ +F+    ++  +WT +++GY       G L   R  F +
Sbjct: 145 VDNALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFME 204

Query: 233 MPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQA 288
             + +  S++  V+        ++ +++  A+ +     N+   N ++  Y +    ++A
Sbjct: 205 EGELSPFSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEA 264

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           ++LF  M Q+D ++W  +I+G+     YE +L +F ++  +G S N  TF+  ++ CA++
Sbjct: 265 KQLFGEMTQKDTITWNTLIAGFETLDSYE-SLCIFSQMVSEGFSPNCFTFTSVIAACANL 323

Query: 349 AALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMI 408
           A L  G+Q+HG ++  G +    + NAL+ MY KCG++ +++ +F G+   ++VSW +M+
Sbjct: 324 AILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMM 383

Query: 409 AGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSV 468
            GY  HG GK+A+ +F  M   G+KPD+I  + VLSACSHAGL+D G  YF  M   Y+V
Sbjct: 384 IGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNV 443

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAE 528
            P    Y C++DLL RAGR++EA +L+ NMPF+P  + W ALLGA + +    + + AA 
Sbjct: 444 APDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAAL 503

Query: 529 MVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFT 588
            V +M+P+ +G YVLLSN  AA G WAD  ++R  MR    +K  G SW+E++N++  F 
Sbjct: 504 KVLEMKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFI 563

Query: 589 VGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 630
           VGD F      +   LE L   M+  GYV       HD+E+E
Sbjct: 564 VGDIFDSSNKEVCEVLELLIRHMKDAGYVLDLDCSAHDLEDE 605



 Score =  109 bits (273), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 191/481 (39%), Gaps = 99/481 (20%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ------ 80
           +I  Y     F  A  LFD+MP RD+++W  M+TGY        A  +F +M +      
Sbjct: 47  LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNMLRDGVKPN 106

Query: 81  --------KDVVSWNAMLSGYAQNGYA---------------------------DEAREV 105
                   K   S  A+L G   +G A                           D AR V
Sbjct: 107 AFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLV 166

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS--KSDWEL--------ISWNCLMGGF 155
           F  +  KNA+SW  L+  Y H        R+F      + EL        +S    +G  
Sbjct: 167 FEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSS 226

Query: 156 VKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
              K + AA  + +     ++   N ++  Y +    S+AK LF +   +D  TW  +++
Sbjct: 227 NLGKQVHAA--VINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIA 284

Query: 216 GYVQNGMLD--EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR-- 267
           G+     LD  E+   F QM  +    N  ++ +++A       +   ++L   +  R  
Sbjct: 285 GF---ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGL 341

Query: 268 --NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
             N+   N +I  Y + G++A + K+F  M   + VSW +++ GY   GH +EA+++F E
Sbjct: 342 DNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNE 401

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +   G   ++  F   LS C+           H  +V  G              YF+   
Sbjct: 402 MVGSGIKPDKIVFMAVLSACS-----------HAGLVDEGLR------------YFRL-- 436

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
                  +    ++D+  +  ++   +R G  K+A  + E+M     KPDE   V +L A
Sbjct: 437 ---MTSYYNVAPDRDI--YACVVDLLSRAGRVKEAYELIENMP---FKPDESIWVALLGA 488

Query: 446 C 446
           C
Sbjct: 489 C 489



 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 164/385 (42%), Gaps = 70/385 (18%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLV---------- 53
           G  + A  +F+ MP R  +++ +MI+GY      S A ++F  M  RD V          
Sbjct: 55  GSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNM-LRDGVKPNAFTVSAV 113

Query: 54  -----SWNVMLTG-----------------YVRNR----------RLGDARRLFDSMPQK 81
                S   +L G                 YV N            + +AR +F+ +  K
Sbjct: 114 LKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARLVFEDIGTK 173

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQM--------PHKNAISWNGLLAAYVHNGRIEEA 133
           + VSW  +++GY     A     VF QM        P   +I+ +   +    N   +  
Sbjct: 174 NAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACASIGSSNLGKQVH 233

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
             + +   +  L   N ++  + + +    A++LF +M  +D ++WNT+I+G+ +  D  
Sbjct: 234 AAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTLIAGF-ETLDSY 292

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN-----EISYN 242
           ++  +F Q      SP  + FT+T++++      +L   +     +  +      E+S N
Sbjct: 293 ESLCIFSQMVSEGFSP--NCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELS-N 349

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP----QR 298
           A++  Y +   +  + ++F  M   N+ SW +M+ GYG +G   +A  LF+ M     + 
Sbjct: 350 ALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKP 409

Query: 299 DCVSWAAIISGYAQTGHYEEALNMF 323
           D + + A++S  +  G  +E L  F
Sbjct: 410 DKIVFMAVLSACSHAGLVDEGLRYF 434



 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 158/377 (41%), Gaps = 69/377 (18%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM--------P------------ 79
           AR +F+ +  ++ VSW  ++TGY   R      R+F  M        P            
Sbjct: 163 ARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVSACAS 222

Query: 80  -------------------QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
                              + ++   NA+L  Y +   A EA+++F +M  K+ I+WN L
Sbjct: 223 IGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTITWNTL 282

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNC-----LMGGFVKRKMLGAARKLFDKMHVR- 174
           +A +      E  C    S+   E  S NC     ++       +L   ++L   +  R 
Sbjct: 283 IAGFETLDSYESLCIF--SQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRG 340

Query: 175 ---DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
              ++   N +I  YA+ G+++ +  +F    H ++ +WT+M+ GY  +G   EA   F+
Sbjct: 341 LDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFN 400

Query: 232 QMP----QKNEISYNAMVAGYVQSNKMDMARELFEAM-------PSRNVSSWNTMITGYG 280
           +M     + ++I + A+++    +  +D     F  M       P R++  +  ++    
Sbjct: 401 EMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDI--YACVVDLLS 458

Query: 281 QNGDIAQARKLFDMMP-QRDCVSWAAIISG---YAQTGHYEEALNMFIEIK--RDGESLN 334
           + G + +A +L + MP + D   W A++     Y Q    + A    +E+K  + G  + 
Sbjct: 459 RAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKPNKAGTYVL 518

Query: 335 RSTFSCALSTCADIAAL 351
            S FS A    AD A+L
Sbjct: 519 LSNFSAAEGNWADFASL 535


>Medtr8g075460.1 | PPR containing plant-like protein | HC |
           chr8:31911388-31913406 | 20130731
          Length = 672

 Score =  333 bits (855), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 187/630 (29%), Positives = 322/630 (51%), Gaps = 52/630 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           R G    A ++F+ MP+ +  S+N +I  ++     + + +LF  MP +   SWN++++ 
Sbjct: 42  RRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHAMPHKTHYSWNLIVST 101

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-------PHKNA 114
             ++  L  A+ LF++MP K+ + WN+M+ GY+++GY   +  +F +M        H++A
Sbjct: 102 LSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEMNLDPLETVHRDA 161

Query: 115 ISWNGLLAA----YVHNGRIEEACRLFDSKSDWELISWNC--LMGGFVKRKMLGAARKLF 168
              + +  A    +  +   +   R+F    ++E     C  ++  + K   L +A ++ 
Sbjct: 162 FVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDSAARVV 221

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
             +   D  S + ++SGYA  G MS A+ +FD         W +++SGYV NG   EA  
Sbjct: 222 GFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEEMEALA 281

Query: 229 FFDQMPQK---------------------------------------NEISYNAMVAGYV 249
            F++M +                                        + +  + ++  Y 
Sbjct: 282 LFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYS 341

Query: 250 QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
           +      + +LF  +   +    NTMIT Y   G +  A+++F+ MP +  +SW +I+ G
Sbjct: 342 KCQHPHDSCKLFHELKVYDAILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVG 401

Query: 310 YAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG 369
             Q     EAL+ F  + +    +++ +F+  +S CA  ++LELG+Q+ G+ +  G E+ 
Sbjct: 402 LTQNACPSEALDTFSMMNKLDVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLESD 461

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT 429
             +  +L+  Y KCG +     VF+G+ + D VSWNTM+ GYA +G+G +AL +F  M  
Sbjct: 462 QIICTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGY 521

Query: 430 IGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLE 489
            GV+P  IT  G+LSAC H GL++ G + F +M  DY + P  +HY+CM+DL  R G   
Sbjct: 522 SGVRPSAITFTGILSACDHCGLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFG 581

Query: 490 EAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYA 549
           EA  L+  MPF+  A  W ++L     HGN  +G+ AAE + +++P NSG Y+ LSN+ A
Sbjct: 582 EAMYLIEEMPFQADANMWLSVLRGCVSHGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILA 641

Query: 550 ASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
            S  W  +  +R  MR+  VQK+ G SW++
Sbjct: 642 TSEDWEGSAEVRELMRNKNVQKIPGCSWMD 671



 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 221/506 (43%), Gaps = 81/506 (16%)

Query: 52  LVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH 111
           +++ N +L  Y R   L DA +LFD MPQ +  SWN ++  +   G+ +++ E+F+ MPH
Sbjct: 30  VITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHAMPH 89

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
           K   SWN +++    +G +++A  LF++      + WN ++ G+ +      +  LF +M
Sbjct: 90  KTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLFKEM 149

Query: 172 HV-------RDVVSWNTMISG----YAQD-GDMSQAKNLFDQSP-HQDVFTWTAMVSGYV 218
           ++       RD    +T+       +A D G    A+   D     QD    +++V+ Y 
Sbjct: 150 NLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYG 209

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
           + G LD A      + + ++ S +A+V+GY  + +M  AR++F+         WN++I+G
Sbjct: 210 KCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISG 269

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y  NG+  +A  LF+ M                               +R+G   + S  
Sbjct: 270 YVSNGEEMEALALFNKM-------------------------------RRNGVWGDFSAV 298

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK---------------- 382
           +  LS  + +  +EL KQ+H    K G      V + LL  Y K                
Sbjct: 299 ANILSISSSLLNVELVKQMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKV 358

Query: 383 ---------------CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM 427
                          CG + +A +VF  +  K ++SWN+++ G  ++    +AL  F  M
Sbjct: 359 YDAILLNTMITVYCNCGRVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMM 418

Query: 428 KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC--MIDLLGRA 485
             + VK D+ +   V+SAC+    ++ G + F    K  ++   S    C  ++D   + 
Sbjct: 419 NKLDVKMDKFSFASVISACAIKSSLELGEQLF---GKAITLGLESDQIICTSLVDFYCKC 475

Query: 486 GRLEEAQDLMRNMPFEPPAASWGALL 511
           G +E  + +   M  +    SW  +L
Sbjct: 476 GLVEMGRKVFDGM-IKTDEVSWNTML 500



 Score =  144 bits (362), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 174/374 (46%), Gaps = 67/374 (17%)

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEA 263
           H  V T   ++  Y + G L +A   FD+MPQ N  S+N ++  ++     + + ELF A
Sbjct: 27  HSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHA 86

Query: 264 MPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
           MP +   SWN +++   ++GD+ QA+ LF+ MP ++ + W ++I GY++ G+   +L +F
Sbjct: 87  MPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLLF 146

Query: 324 IEIKRDG-ESLNRSTF--SCALSTCADIAALELGKQIHGQVVKTG--YETGCFVGNALLG 378
            E+  D  E+++R  F  S     CAD+ AL+ GKQ+H +V   G  +E    + ++++ 
Sbjct: 147 KEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVN 206

Query: 379 MYFKCGSIGEANDVFEGIEEKD-------------------------------VVSWNTM 407
            Y KCG +  A  V   ++E D                                V WN++
Sbjct: 207 FYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSI 266

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS---HAGLIDRGTEYFYSMNK 464
           I+GY  +G   +AL +F  M+  GV  D   +  +LS  S   +  L+ +  ++ + +  
Sbjct: 267 ISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSLLNVELVKQMHDHAFKIGA 326

Query: 465 DYSVTPSSK-----------HYTC----------------MIDLLGRAGRLEEAQDLMRN 497
            + +  +S            H +C                MI +    GR+E+A+++  +
Sbjct: 327 THDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCGRVEDAKEVFNS 386

Query: 498 MPFEPPAASWGALL 511
           MP      SW ++L
Sbjct: 387 MP-NKTLISWNSIL 399


>Medtr7g105440.1 | PPR containing plant-like protein | HC |
           chr7:42760641-42762768 | 20130731
          Length = 589

 Score =  333 bits (855), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 296/514 (57%), Gaps = 30/514 (5%)

Query: 52  LVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH 111
           L+S  + L   +    L  +  +F+ +       WN  +  + Q+ +  +    F +M  
Sbjct: 49  LISNFISLANTLSISTLSYSTAVFNRVLNPSTFLWNTFIRTHCQSSFFSDTISAFIRMKA 108

Query: 112 KNAISWNGLLAAYVHNGRIEE---ACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           + A+       +Y +   I+     C++   KS          + G V R  L       
Sbjct: 109 EGAVP-----DSYTYPSVIKACSGTCKVLVGKS----------VHGSVFRCGLD------ 147

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
                +D+    T++  Y + G++  A+ +FD+   ++V +WTAMV GYV  G + EA+ 
Sbjct: 148 -----QDLFVGTTLVDMYGKCGEIGDARKVFDELSDRNVVSWTAMVVGYVTAGDVVEAKK 202

Query: 229 FFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQA 288
            FD+MP +N  S+NAM+ G+V+   +  AR +F++MP +NV S+ TMI GY + GD+  +
Sbjct: 203 VFDEMPLRNVASWNAMIRGFVKVGDLSSARGVFDSMPEKNVVSFTTMIDGYAKAGDMESS 262

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           R LF+   ++D V+W+A+ISGY Q G   EAL +F+E++      +       +S  + +
Sbjct: 263 RFLFEQAAEKDVVAWSALISGYVQNGEANEALKVFLEMESMKVIPDEFVLVSLMSAASQL 322

Query: 349 AALELGKQIHGQVVKTGYETGC-FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
             L+L +++   V  +  +    +V +AL+ M  KCG++  A  +F  + ++D+VS+ +M
Sbjct: 323 GDLKLAQRVDSYVDNSSIDLQQDYVISALVDMNAKCGNMERALKLFREMPKRDLVSYCSM 382

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYS 467
           I G++ HG G+ A+ +F  M   G+ PDE     VL+ACSH+GL+D+G +YF SM ++Y 
Sbjct: 383 IHGFSIHGHGEDAVNLFNRMLMEGIVPDEAAFTIVLTACSHSGLVDKGWKYFNSMEENYG 442

Query: 468 VTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAA 527
           ++P+  H+ CM+DLLGR+G+L +A +L+++M  EP A +WGAL+GA ++HG+TELGE  A
Sbjct: 443 ISPTPDHFACMVDLLGRSGQLRDAYELIKSMHIEPNAGAWGALIGACKLHGDTELGEIVA 502

Query: 528 EMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMR 561
             +F++EP N+  YVLLSN+YAA+GRW D   +R
Sbjct: 503 NRLFELEPQNAANYVLLSNIYAAAGRWKDVSLVR 536



 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 172/340 (50%), Gaps = 29/340 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G    A +VF+ +  R+ VS+ AM+ GY+       A+ +FD+MP R++ SWN M+ G
Sbjct: 162 KCGEIGDARKVFDELSDRNVVSWTAMVVGYVTAGDVVEAKKVFDEMPLRNVASWNAMIRG 221

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           +V+   L  AR +FDSMP+K+VVS+  M+ GYA+ G  + +R +F Q   K+ ++W+ L+
Sbjct: 222 FVKVGDLSSARGVFDSMPEKNVVSFTTMIDGYAKAGDMESSRFLFEQAAEKDVVAWSALI 281

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW-- 179
           + YV NG   EA ++F      E+ S   +   FV   ++ AA +L D    + V S+  
Sbjct: 282 SGYVQNGEANEALKVF-----LEMESMKVIPDEFVLVSLMSAASQLGDLKLAQRVDSYVD 336

Query: 180 ------------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
                       + ++   A+ G+M +A  LF + P +D+ ++ +M+ G+  +G  ++A 
Sbjct: 337 NSSIDLQQDYVISALVDMNAKCGNMERALKLFREMPKRDLVSYCSMIHGFSIHGHGEDAV 396

Query: 228 TFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMP-----SRNVSSWNTMITG 278
             F++M  +    +E ++  ++     S  +D   + F +M      S     +  M+  
Sbjct: 397 NLFNRMLMEGIVPDEAAFTIVLTACSHSGLVDKGWKYFNSMEENYGISPTPDHFACMVDL 456

Query: 279 YGQNGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYE 317
            G++G +  A +L   M  + +  +W A+I      G  E
Sbjct: 457 LGRSGQLRDAYELIKSMHIEPNAGAWGALIGACKLHGDTE 496



 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 202/408 (49%), Gaps = 26/408 (6%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +DL     ++  Y +   +GDAR++FD +  ++VVSW AM+ GY   G   EA++VF +M
Sbjct: 148 QDLFVGTTLVDMYGKCGEIGDARKVFDELSDRNVVSWTAMVVGYVTAGDVVEAKKVFDEM 207

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
           P +N  SWN ++  +V  G +  A  +FDS  +  ++S+  ++ G+ K   + ++R LF+
Sbjct: 208 PLRNVASWNAMIRGFVKVGDLSSARGVFDSMPEKNVVSFTTMIDGYAKAGDMESSRFLFE 267

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDE 225
           +   +DVV+W+ +ISGY Q+G+ ++A  +F +     V    F   +++S   Q G L  
Sbjct: 268 QAAEKDVVAWSALISGYVQNGEANEALKVFLEMESMKVIPDEFVLVSLMSAASQLGDLKL 327

Query: 226 AR---TFFD--QMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYG 280
           A+   ++ D   +  + +   +A+V    +   M+ A +LF  MP R++ S+ +MI G+ 
Sbjct: 328 AQRVDSYVDNSSIDLQQDYVISALVDMNAKCGNMERALKLFREMPKRDLVSYCSMIHGFS 387

Query: 281 QNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GESLNR 335
            +G    A  LF+ M       D  ++  +++  + +G  ++    F  ++ + G S   
Sbjct: 388 IHGHGEDAVNLFNRMLMEGIVPDEAAFTIVLTACSHSGLVDKGWKYFNSMEENYGISPTP 447

Query: 336 STFSCALSTCADIAAL----ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
             F+C +        L    EL K +H +     +  G  +G   L    + G I  AN 
Sbjct: 448 DHFACMVDLLGRSGQLRDAYELIKSMHIEPNAGAW--GALIGACKLHGDTELGEI-VANR 504

Query: 392 VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           +FE +E ++  ++  +   YA  G  K   +V    + + V+  EI M
Sbjct: 505 LFE-LEPQNAANYVLLSNIYAAAGRWKDVSLV----RILNVQNMEIGM 547



 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM--YFKCGSIGEANDVFEGIEEK 399
           L  C  I  L+   Q+H  +++ G E   F+ +  + +       ++  +  VF  +   
Sbjct: 22  LKACKRIQHLQ---QVHASIIQRGLEQDQFLISNFISLANTLSISTLSYSTAVFNRVLNP 78

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA-----GLIDR 454
               WNT I  + +  F    +  F  MK  G  PD  T   V+ ACS       G    
Sbjct: 79  STFLWNTFIRTHCQSSFFSDTISAFIRMKAEGAVPDSYTYPSVIKACSGTCKVLVGKSVH 138

Query: 455 GTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           G+ +   +++D  V       T ++D+ G+ G + +A+ +   +  +    SW A++
Sbjct: 139 GSVFRCGLDQDLFVG------TTLVDMYGKCGEIGDARKVFDELS-DRNVVSWTAMV 188


>Medtr4g014050.1 | PPR containing plant-like protein | HC |
           chr4:3891221-3897546 | 20130731
          Length = 935

 Score =  328 bits (840), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/637 (31%), Positives = 322/637 (50%), Gaps = 58/637 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLF-----DSMP 79
           N+ +   ++  +   ARD+F+KM  RD +SW  ++ GYV      +A  LF     DS  
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 80  QKD--VVSWNAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACR 135
           QKD  VVS          N Y  E    F        +    + L+  Y+  G+ E+ C 
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCS 207

Query: 136 LFDSKSDWELISWNCLMGGFVK---------------RKMLGAARKLF------------ 168
           +F++ +   ++SW  ++ G V                R  +G     F            
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGL 267

Query: 169 ----DKMHVRDVVSW--------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSG 216
                 +H + +           NT+ + Y++         LF +    DV +WT ++  
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 217 YVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMA----RELFEAMPSR----- 267
           YVQ G  + A   F +M +K+++S N      V S   ++A     E       R     
Sbjct: 328 YVQMGDEERALDAFKRM-RKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVD 386

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
            +S  N++IT Y + G + +A  +FD M ++D +SW+ IIS Y Q  H +EA N    + 
Sbjct: 387 ALSVSNSIITLYSKCGLLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMS 446

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           R+G   N    +  LS C  +A LE GKQ+H   +  G +    V +AL+ MY + G++ 
Sbjct: 447 REGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQ 506

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA+ +F+ I+  D+VSW  MI GYA HG+ ++A+ +FE++ ++G+ PD +T +G+L+AC+
Sbjct: 507 EASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACN 566

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           HAGL+D G  Y+  M  +Y + PS +HY C+IDLL RAGRL EA+ ++RNMPF      W
Sbjct: 567 HAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVW 626

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
             LL A R HG+ +    AAE + ++ P+++G ++ L+N+Y+ASGR  +A ++R  M+  
Sbjct: 627 STLLRACRDHGDLDRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSK 686

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFL 604
           GV K  G+SW+   ++++ F  G   HP KD    FL
Sbjct: 687 GVIKEPGWSWINSNDQLNTFVAGVQSHPLKDAENTFL 723



 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 153/336 (45%), Gaps = 10/336 (2%)

Query: 172 HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD 231
           +V ++   N+ +    + G + +A+++F++  H+D  +WT +++GYV     +EA   F 
Sbjct: 80  YVPNMPELNSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFS 139

Query: 232 QMPQKNEISYNAMVAGY-VQSNKMDMARELFEAMPSRNVSSW--------NTMITGYGQN 282
            M   + +  +  V    +++  + M     E +   +V S         + ++  Y + 
Sbjct: 140 NMWVDSGLQKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKV 199

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           G   Q   +F+ M  R+ VSW A+I G    G   + L+ F E+ R     +  TF+ AL
Sbjct: 200 GKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVAL 259

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
              A+   L  GK IH Q +K G+    +V N L  MY KC        +F  +   DVV
Sbjct: 260 KASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVV 319

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           SW  +I  Y + G  ++AL  F+ M+   V P+E T   V+SAC++  +   G E  +  
Sbjct: 320 SWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWG-EQIHGH 378

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
                +  +      +I L  + G L+EA  +   M
Sbjct: 379 ALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGM 414


>Medtr7g105540.1 | PPR containing plant-like protein | HC |
           chr7:42802997-42805935 | 20130731
          Length = 596

 Score =  326 bits (835), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 156/389 (40%), Positives = 252/389 (64%), Gaps = 1/389 (0%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
           +D+    T+I  Y + G +S A+ +F++   ++V +WTAMV GYV  G + +A+  FD M
Sbjct: 148 QDLFMGTTLIDMYGKCGQISDARKVFNELTERNVVSWTAMVVGYVTAGDVVKAKKVFDGM 207

Query: 234 PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFD 293
           P +N  S+NAM+ G+V+   +  AR +F++MP +NV S+ TM+ GY + GD+  +R LF+
Sbjct: 208 PLRNVASWNAMIRGFVKVGDLSSARGVFDSMPEKNVVSFTTMVDGYAKAGDMESSRFLFE 267

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
              ++D V+W+A+ISGY Q G   EAL +F+E++      +       +S  + +  L+L
Sbjct: 268 QAAEKDVVTWSALISGYVQNGEANEALKVFLEMESMNVIPDEFVLVGLMSAASQLGDLKL 327

Query: 354 GKQIHGQVVKTGYETGC-FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            +++   V     +     V +AL+ M  KCG++  A  +F+ + E+D+VS+ +MI G++
Sbjct: 328 AQRVDSYVGNNSIDLQKDHVISALVDMNAKCGNMERALKLFQEMPERDLVSYCSMIHGFS 387

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
            HG G+ A+ +F  M   G+ PDE     VL+ACSH+GLID+G +YF SM ++Y ++P+ 
Sbjct: 388 IHGHGEDAVNLFNRMLMEGIVPDEAAFTIVLTACSHSGLIDKGWKYFNSMEENYGISPTP 447

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
            H+ CM+DLLGR+G+L +A +L+++M  EP A +WGAL+GA ++ G+TELGE  A  +F+
Sbjct: 448 DHFACMVDLLGRSGQLRDAYELIKSMHIEPNAGAWGALIGACKLQGDTELGEIVANRLFE 507

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMR 561
           +EP N+  YVLLSN+YAA+GRW D   +R
Sbjct: 508 LEPQNAANYVLLSNIYAAAGRWKDVSLVR 536



 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 186/366 (50%), Gaps = 29/366 (7%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           VFN +   S+  +N  I  + +++ FS     F +M     V  +      ++    G  
Sbjct: 71  VFNRVLNPSTFLWNTFIRTHCQSSFFSDTISAFIRMKAEGAVPDSYTYPSVIKACS-GTC 129

Query: 72  RRL---------FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLA 122
           + L         F     +D+     ++  Y + G   +AR+VF ++  +N +SW  ++ 
Sbjct: 130 KVLVGKSVHGSVFRCGLDQDLFMGTTLIDMYGKCGQISDARKVFNELTERNVVSWTAMVV 189

Query: 123 AYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTM 182
            YV  G + +A ++FD      + SWN ++ GFVK   L +AR +FD M  ++VVS+ TM
Sbjct: 190 GYVTAGDVVKAKKVFDGMPLRNVASWNAMIRGFVKVGDLSSARGVFDSMPEKNVVSFTTM 249

Query: 183 ISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN 242
           + GYA+ GDM  ++ LF+Q+  +DV TW+A++SGYVQNG  +EA   F +M   N I   
Sbjct: 250 VDGYAKAGDMESSRFLFEQAAEKDVVTWSALISGYVQNGEANEALKVFLEMESMNVIPDE 309

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSSW--------------NTMITGYGQNGDIAQA 288
            ++ G      M  A +L +   ++ V S+              + ++    + G++ +A
Sbjct: 310 FVLVGL-----MSAASQLGDLKLAQRVDSYVGNNSIDLQKDHVISALVDMNAKCGNMERA 364

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
            KLF  MP+RD VS+ ++I G++  GH E+A+N+F  +  +G   + + F+  L+ C+  
Sbjct: 365 LKLFQEMPERDLVSYCSMIHGFSIHGHGEDAVNLFNRMLMEGIVPDEAAFTIVLTACSHS 424

Query: 349 AALELG 354
             ++ G
Sbjct: 425 GLIDKG 430



 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 172/340 (50%), Gaps = 29/340 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G    A +VFN +  R+ VS+ AM+ GY+       A+ +FD MP R++ SWN M+ G
Sbjct: 162 KCGQISDARKVFNELTERNVVSWTAMVVGYVTAGDVVKAKKVFDGMPLRNVASWNAMIRG 221

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           +V+   L  AR +FDSMP+K+VVS+  M+ GYA+ G  + +R +F Q   K+ ++W+ L+
Sbjct: 222 FVKVGDLSSARGVFDSMPEKNVVSFTTMVDGYAKAGDMESSRFLFEQAAEKDVVTWSALI 281

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW-- 179
           + YV NG   EA ++F      E+ S N +   FV   ++ AA +L D    + V S+  
Sbjct: 282 SGYVQNGEANEALKVF-----LEMESMNVIPDEFVLVGLMSAASQLGDLKLAQRVDSYVG 336

Query: 180 ------------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
                       + ++   A+ G+M +A  LF + P +D+ ++ +M+ G+  +G  ++A 
Sbjct: 337 NNSIDLQKDHVISALVDMNAKCGNMERALKLFQEMPERDLVSYCSMIHGFSIHGHGEDAV 396

Query: 228 TFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMP-----SRNVSSWNTMITG 278
             F++M  +    +E ++  ++     S  +D   + F +M      S     +  M+  
Sbjct: 397 NLFNRMLMEGIVPDEAAFTIVLTACSHSGLIDKGWKYFNSMEENYGISPTPDHFACMVDL 456

Query: 279 YGQNGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYE 317
            G++G +  A +L   M  + +  +W A+I      G  E
Sbjct: 457 LGRSGQLRDAYELIKSMHIEPNAGAWGALIGACKLQGDTE 496



 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 194/408 (47%), Gaps = 35/408 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
             +I  Y +  + S AR +F+++ +R++VSW  M+ GYV    +  A+++FD MP ++V 
Sbjct: 154 TTLIDMYGKCGQISDARKVFNELTERNVVSWTAMVVGYVTAGDVVKAKKVFDGMPLRNVA 213

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           SWNAM+ G+ + G    AR VF  MP KN +S+  ++  Y   G +E +  LF+  ++ +
Sbjct: 214 SWNAMIRGFVKVGDLSSARGVFDSMPEKNVVSFTTMVDGYAKAGDMESSRFLFEQAAEKD 273

Query: 145 LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPH 204
           +++W+ L+ G+V+      A K+F +M      S N +   +   G MS A  L D    
Sbjct: 274 VVTWSALISGYVQNGEANEALKVFLEME-----SMNVIPDEFVLVGLMSAASQLGDLKLA 328

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM 264
           Q        V  YV N  +D          QK+ +  +A+V    +   M+ A +LF+ M
Sbjct: 329 QR-------VDSYVGNNSID---------LQKDHV-ISALVDMNAKCGNMERALKLFQEM 371

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV----SWAAIISGYAQTGHYEEAL 320
           P R++ S+ +MI G+  +G    A  LF+ M     V    ++  +++  + +G  ++  
Sbjct: 372 PERDLVSYCSMIHGFSIHGHGEDAVNLFNRMLMEGIVPDEAAFTIVLTACSHSGLIDKGW 431

Query: 321 NMFIEIKRD-GESLNRSTFSCALSTCADIAAL----ELGKQIHGQVVKTGYETGCFVGNA 375
             F  ++ + G S     F+C +        L    EL K +H +     +  G  +G  
Sbjct: 432 KYFNSMEENYGISPTPDHFACMVDLLGRSGQLRDAYELIKSMHIEPNAGAW--GALIGAC 489

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV 423
            L    + G I  AN +FE +E ++  ++  +   YA  G  K   +V
Sbjct: 490 KLQGDTELGEI-VANRLFE-LEPQNAANYVLLSNIYAAAGRWKDVSLV 535



 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 19/253 (7%)

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
           W   I  + Q+  + + ++ FI +K +G   +  T+   +  C+    + +GK +HG V 
Sbjct: 83  WNTFIRTHCQSSFFSDTISAFIRMKAEGAVPDSYTYPSVIKACSGTCKVLVGKSVHGSVF 142

Query: 363 KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALM 422
           + G +   F+G  L+ MY KCG I +A  VF  + E++VVSW  M+ GY   G   +A  
Sbjct: 143 RCGLDQDLFMGTTLIDMYGKCGQISDARKVFNELTERNVVSWTAMVVGYVTAGDVVKAKK 202

Query: 423 VFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLL 482
           VF+ M    V      + G +      G +      F SM +   V+     +T M+D  
Sbjct: 203 VFDGMPLRNVASWNAMIRGFV----KVGDLSSARGVFDSMPEKNVVS-----FTTMVDGY 253

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE--KAAEMVFKMEPHN--S 538
            +AG +E ++ L      E    +W AL     I G  + GE  +A ++  +ME  N   
Sbjct: 254 AKAGDMESSRFLFEQAA-EKDVVTWSAL-----ISGYVQNGEANEALKVFLEMESMNVIP 307

Query: 539 GMYVLLSNLYAAS 551
             +VL+  + AAS
Sbjct: 308 DEFVLVGLMSAAS 320


>Medtr4g015760.4 | PPR containing plant-like protein | HC |
           chr4:4765180-4759488 | 20130731
          Length = 703

 Score =  325 bits (832), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/599 (31%), Positives = 314/599 (52%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           +I G+L+  R              D+   + ++  Y +  ++ DA ++F   P+ DVV W
Sbjct: 128 VIHGFLKKVRI-----------DGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLW 176

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +    V       AC      S+++L 
Sbjct: 177 TSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV-----ASACAQL---SNFKL- 227

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 228 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 274

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ MV+ Y  NG   +    F++M  K    N ++  +++      + ++   ++ E
Sbjct: 275 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 334

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A  LF+ MP++D ++WA + SGYA  G   E
Sbjct: 335 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHE 394

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+    +H  V+K G+E   F+G +L+ 
Sbjct: 395 SMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIE 454

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL +F  M      KP+ +
Sbjct: 455 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNV 514

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A D++ N
Sbjct: 515 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINN 574

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++P+++G Y+LLSN+Y+    W  A
Sbjct: 575 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSA 634

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 635 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAF 693



 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 232/488 (47%), Gaps = 38/488 (7%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y R   +  A +LF   P + V  WNA+L  Y   G   E   +F QM + +++S     
Sbjct: 46  YARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVS----- 100

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVS 178
                   IEE       + D   +S        +++ +LG     F K  VR   D+  
Sbjct: 101 --------IEE-------RPDNYSVSIALKSCAGLRKLLLGKVIHGFLK-KVRIDGDMFV 144

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
            + +I  Y + G M+ A  +F + P  DV  WT+++SGY Q+G  + A  FF +M    +
Sbjct: 145 GSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEK 204

Query: 239 ISYN-----AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQAR 289
           +S +     ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A 
Sbjct: 205 VSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNAS 264

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
            LF  M  +D +SW+ +++ YA  G   + L++F E+       N  T    L  CA I+
Sbjct: 265 NLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACIS 324

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
            LE G +IH   V  G+E    V  AL+ MY KC S  +A D+F  + +KDV++W  + +
Sbjct: 325 NLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFS 384

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           GYA +G   +++ VF +M + G +PD I +V +L+  S  G++ +       + K+    
Sbjct: 385 GYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKN-GFE 443

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
            +      +I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A ++
Sbjct: 444 NNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKL 499

Query: 530 VFKMEPHN 537
            ++M  H+
Sbjct: 500 FYQMANHS 507



 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 168/381 (44%), Gaps = 61/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS--------- 54
           G  + A++VF   P+   V + ++ISGY ++    LA   F +M   + VS         
Sbjct: 156 GQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 215

Query: 55  -------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                           N +L  Y +   + +A  LF  M  KD+
Sbjct: 216 ASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDI 275

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW+ M++ YA NG   +  ++F +M  K    N ++   +L A      +EE  ++ + 
Sbjct: 276 ISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHEL 335

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
             ++    E      LM  ++K      A  LF++M  +DV++W  + SGYA +G + ++
Sbjct: 336 AVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHES 395

Query: 196 ----KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
               +N+       D      +++   + G+L +A            + N+    +++  
Sbjct: 396 MWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEV 455

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-----PQRDCVS 302
           Y + + ++ A ++F+ M  ++V +W+++I  YG +G   +A KLF  M      + + V+
Sbjct: 456 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVT 515

Query: 303 WAAIISGYAQTGHYEEALNMF 323
           + +I+S  + +G  +E +NMF
Sbjct: 516 FISILSACSHSGLIKEGINMF 536



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 10/194 (5%)

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           R+     L TC    ++    Q+H Q +K G     F+   L  +Y +  SI  A+ +F+
Sbjct: 4   RNLLVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQ 60

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK-----TIGVKPDEITMVGVLSACSHA 449
               + V  WN ++  Y   G   + L +F  M      +I  +PD  ++   L +C+  
Sbjct: 61  ETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGL 120

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
             +  G +  +   K   +       + +IDL  + G++ +A  +    P +P    W +
Sbjct: 121 RKLLLG-KVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYP-KPDVVLWTS 178

Query: 510 LLGASRIHGNTELG 523
           ++      G+ EL 
Sbjct: 179 IISGYEQSGSPELA 192


>Medtr4g015760.1 | PPR containing plant-like protein | HC |
           chr4:4766254-4759488 | 20130731
          Length = 703

 Score =  325 bits (832), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 190/599 (31%), Positives = 314/599 (52%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           +I G+L+  R              D+   + ++  Y +  ++ DA ++F   P+ DVV W
Sbjct: 128 VIHGFLKKVRI-----------DGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLW 176

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +    V       AC      S+++L 
Sbjct: 177 TSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV-----ASACAQL---SNFKL- 227

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 228 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 274

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ MV+ Y  NG   +    F++M  K    N ++  +++      + ++   ++ E
Sbjct: 275 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 334

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A  LF+ MP++D ++WA + SGYA  G   E
Sbjct: 335 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHE 394

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+    +H  V+K G+E   F+G +L+ 
Sbjct: 395 SMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIE 454

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL +F  M      KP+ +
Sbjct: 455 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNV 514

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A D++ N
Sbjct: 515 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINN 574

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++P+++G Y+LLSN+Y+    W  A
Sbjct: 575 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSA 634

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 635 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAF 693



 Score =  184 bits (467), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 232/488 (47%), Gaps = 38/488 (7%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y R   +  A +LF   P + V  WNA+L  Y   G   E   +F QM + +++S     
Sbjct: 46  YARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVS----- 100

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVS 178
                   IEE       + D   +S        +++ +LG     F K  VR   D+  
Sbjct: 101 --------IEE-------RPDNYSVSIALKSCAGLRKLLLGKVIHGFLK-KVRIDGDMFV 144

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
            + +I  Y + G M+ A  +F + P  DV  WT+++SGY Q+G  + A  FF +M    +
Sbjct: 145 GSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEK 204

Query: 239 ISYN-----AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQAR 289
           +S +     ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A 
Sbjct: 205 VSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNAS 264

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
            LF  M  +D +SW+ +++ YA  G   + L++F E+       N  T    L  CA I+
Sbjct: 265 NLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACIS 324

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
            LE G +IH   V  G+E    V  AL+ MY KC S  +A D+F  + +KDV++W  + +
Sbjct: 325 NLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFS 384

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           GYA +G   +++ VF +M + G +PD I +V +L+  S  G++ +       + K+    
Sbjct: 385 GYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKN-GFE 443

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
            +      +I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A ++
Sbjct: 444 NNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKL 499

Query: 530 VFKMEPHN 537
            ++M  H+
Sbjct: 500 FYQMANHS 507



 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 168/381 (44%), Gaps = 61/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS--------- 54
           G  + A++VF   P+   V + ++ISGY ++    LA   F +M   + VS         
Sbjct: 156 GQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 215

Query: 55  -------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                           N +L  Y +   + +A  LF  M  KD+
Sbjct: 216 ASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDI 275

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW+ M++ YA NG   +  ++F +M  K    N ++   +L A      +EE  ++ + 
Sbjct: 276 ISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHEL 335

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
             ++    E      LM  ++K      A  LF++M  +DV++W  + SGYA +G + ++
Sbjct: 336 AVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHES 395

Query: 196 ----KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
               +N+       D      +++   + G+L +A            + N+    +++  
Sbjct: 396 MWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEV 455

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-----PQRDCVS 302
           Y + + ++ A ++F+ M  ++V +W+++I  YG +G   +A KLF  M      + + V+
Sbjct: 456 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVT 515

Query: 303 WAAIISGYAQTGHYEEALNMF 323
           + +I+S  + +G  +E +NMF
Sbjct: 516 FISILSACSHSGLIKEGINMF 536



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 10/194 (5%)

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           R+     L TC    ++    Q+H Q +K G     F+   L  +Y +  SI  A+ +F+
Sbjct: 4   RNLLVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQ 60

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK-----TIGVKPDEITMVGVLSACSHA 449
               + V  WN ++  Y   G   + L +F  M      +I  +PD  ++   L +C+  
Sbjct: 61  ETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGL 120

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
             +  G +  +   K   +       + +IDL  + G++ +A  +    P +P    W +
Sbjct: 121 RKLLLG-KVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYP-KPDVVLWTS 178

Query: 510 LLGASRIHGNTELG 523
           ++      G+ EL 
Sbjct: 179 IISGYEQSGSPELA 192


>Medtr4g032895.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:11375774-11372564 | 20130731
          Length = 938

 Score =  324 bits (831), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/644 (30%), Positives = 326/644 (50%), Gaps = 90/644 (13%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKN 113
           ++  Y +   L DA+++FD +  ++VV WN +L  YAQNG   +  E+F +M       +
Sbjct: 283 LINMYGKCEMLCDAKKVFDVVCDRNVVMWNTILGVYAQNGCLSDVMELFSEMMGCGNDPD 342

Query: 114 AISWNGLLAA-----YVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
             +++ +L++     ++  GR   +  +    +D  L   N L+  + K   L  ARK F
Sbjct: 343 EFTYSSILSSCACFDFLDIGRQLHSTIIKKRFTD-NLCVNNALVDMYAKAGALKEARKQF 401

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQ----------------- 205
           ++M  RD +SWN ++ GY Q+ + ++A N+F +       P +                 
Sbjct: 402 ERMKYRDNISWNAILVGYVQEEEETEAFNMFRRMNRHGVVPDEVCMASILSACGNIKVLE 461

Query: 206 ----------------DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV 249
                           ++F  ++++  Y + G +++AR  +  MP+ + +S NA++AGY 
Sbjct: 462 AGLQFHGLSVKLGLDTNLFAGSSLIDMYSKCGGIEDARKIYSCMPEWSVVSMNALIAGYA 521

Query: 250 QSNKMDMARELFEAM-----PSRNVSSW-----------------------NTMITG--- 278
             +  +    L E       PS    +                        N ++ G   
Sbjct: 522 IKDTKEAINLLHEMQILGLKPSEITFASLIDCCKESPKVILGMQIHCAILKNGLLCGSEF 581

Query: 279 --------YGQNGDIAQARKLFDMMPQ-RDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
                   Y  +  +A+   LF  +   +  V W A+ISG+ Q    ++ALN++ E++ +
Sbjct: 582 LGTSLLGMYMDSQKLAEGNILFSELSNLKSIVLWTALISGHTQNDCSDQALNLYREMRDN 641

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
               +++TF   L  CA +++L+ G++IH  +  TG++      +AL+ MY KCG +  A
Sbjct: 642 NILPDQATFVTVLRACALLSSLQDGQEIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSA 701

Query: 390 NDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
             VFE +  +KDV+SWN+MI G+A++G+ ++AL VF+ M    V PD++T +GVL+ACSH
Sbjct: 702 AKVFEELPIKKDVISWNSMIVGFAKNGYAERALKVFDEMTLSSVSPDDVTFLGVLTACSH 761

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           AGL+  G + F +M   YS+ P   H+ CM+DLLGR G LEEA++ +  +  EP A  W 
Sbjct: 762 AGLVSEGRQIFDNMVNYYSIHPRVDHHACMVDLLGRCGFLEEAEEFIDKLDVEPNAMIWA 821

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
            LLGA  IHG+ + G +AAE + ++EP NS  YVLL N++A SG W +A ++R  M    
Sbjct: 822 NLLGACSIHGDEKRGLRAAEKLIELEPQNSSPYVLLYNMHAGSGHWDEAKSLRRTMVQNE 881

Query: 569 VQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
           VQK  G SW+ V    + F   D  HP  D I   L+ L   MR
Sbjct: 882 VQKTPGCSWIVVDKTTNLFVASDMSHPSSDEISHALKHLAALMR 925



 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 160/562 (28%), Positives = 256/562 (45%), Gaps = 74/562 (13%)

Query: 7   DSALRVFNTMPRRSSV---SYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT--- 60
           +SA  +FN++ R  ++   ++ A+I GY+R   F  A  LFD+M    ++   V++T   
Sbjct: 124 NSARTLFNSVSRLDNLDTATFTALIGGYVRVGMFDDALQLFDEMQSGFVLDELVIVTVLN 183

Query: 61  GYVRNRRLGDARRLFDSMPQ-KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
             V   +L  A  LFD M    +VV+WN M+SG+ + GY  EA E + +M     IS   
Sbjct: 184 ACVNLGKLDHACELFDEMDGCGNVVAWNVMISGHGKRGYHKEAVEFYRKMRMNGVISSRS 243

Query: 120 LLAAY---------------VHNGRIEEACRL-FDSKSDWELISWNCLMGGFVKRKMLGA 163
            LA+                VH     EA +L F+S     +   + L+  + K +ML  
Sbjct: 244 TLASVLSAVAGLGDLGCGLLVHG----EAVKLGFESS----VYVASSLINMYGKCEMLCD 295

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQ 219
           A+K+FD +  R+VV WNT++  YAQ+G +S    LF +        D FT+++++S    
Sbjct: 296 AKKVFDVVCDRNVVMWNTILGVYAQNGCLSDVMELFSEMMGCGNDPDEFTYSSILSSCAC 355

Query: 220 NGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
              LD  R     + +K    N    NA+V  Y ++  +  AR+ FE M  R+  SWN +
Sbjct: 356 FDFLDIGRQLHSTIIKKRFTDNLCVNNALVDMYAKAGALKEARKQFERMKYRDNISWNAI 415

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           + G                               Y Q     EA NMF  + R G   + 
Sbjct: 416 LVG-------------------------------YVQEEEETEAFNMFRRMNRHGVVPDE 444

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
              +  LS C +I  LE G Q HG  VK G +T  F G++L+ MY KCG I +A  ++  
Sbjct: 445 VCMASILSACGNIKVLEAGLQFHGLSVKLGLDTNLFAGSSLIDMYSKCGGIEDARKIYSC 504

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           + E  VVS N +IAGYA     K+A+ +   M+ +G+KP EIT   ++  C  +  +  G
Sbjct: 505 MPEWSVVSMNALIAGYAIKD-TKEAINLLHEMQILGLKPSEITFASLIDCCKESPKVILG 563

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
            +   ++ K+  +  S    T ++ +   + +L E   L   +        W AL+    
Sbjct: 564 MQIHCAILKNGLLCGSEFLGTSLLGMYMDSQKLAEGNILFSELSNLKSIVLWTALISG-- 621

Query: 516 IHGNTELGEKAAEMVFKMEPHN 537
            H   +  ++A  +  +M  +N
Sbjct: 622 -HTQNDCSDQALNLYREMRDNN 642



 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 212/437 (48%), Gaps = 27/437 (6%)

Query: 120 LLAAYVHNGRIEEACRLFDSKS---DWELISWNCLMGGFVKRKMLGAARKLFDKMH---V 173
           L+  Y     +  A  LF+S S   + +  ++  L+GG+V+  M   A +LFD+M    V
Sbjct: 113 LIHFYAKCKCLNSARTLFNSVSRLDNLDTATFTALIGGYVRVGMFDDALQLFDEMQSGFV 172

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQ-SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQ 232
            D +   T+++     G +  A  LFD+     +V  W  M+SG+ + G   EA  F+ +
Sbjct: 173 LDELVIVTVLNACVNLGKLDHACELFDEMDGCGNVVAWNVMISGHGKRGYHKEAVEFYRK 232

Query: 233 MPQKNEISYNAMVAGYVQS--------NKMDMARELFEAMPSRNVSSWNTMITGYGQNGD 284
           M     IS  + +A  + +          + +  E  +     +V   +++I  YG+   
Sbjct: 233 MRMNGVISSRSTLASVLSAVAGLGDLGCGLLVHGEAVKLGFESSVYVASSLINMYGKCEM 292

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           +  A+K+FD++  R+ V W  I+  YAQ G   + + +F E+   G   +  T+S  LS+
Sbjct: 293 LCDAKKVFDVVCDRNVVMWNTILGVYAQNGCLSDVMELFSEMMGCGNDPDEFTYSSILSS 352

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           CA    L++G+Q+H  ++K  +     V NAL+ MY K G++ EA   FE ++ +D +SW
Sbjct: 353 CACFDFLDIGRQLHSTIIKKRFTDNLCVNNALVDMYAKAGALKEARKQFERMKYRDNISW 412

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
           N ++ GY +     +A  +F  M   GV PDE+ M  +LSAC +  +++ G + F+ ++ 
Sbjct: 413 NAILVGYVQEEEETEAFNMFRRMNRHGVVPDEVCMASILSACGNIKVLEAGLQ-FHGLSV 471

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE--- 521
              +  +    + +ID+  + G +E+A+ +   MP E    S  AL+    I    E   
Sbjct: 472 KLGLDTNLFAGSSLIDMYSKCGGIEDARKIYSCMP-EWSVVSMNALIAGYAIKDTKEAIN 530

Query: 522 -------LGEKAAEMVF 531
                  LG K +E+ F
Sbjct: 531 LLHEMQILGLKPSEITF 547



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
           ++FS  LS+C  +  LE G  +H  ++K G+E+   +   L+  Y KC  +  A  +F  
Sbjct: 73  NSFSTTLSSCTKLENLEFGTSVHTSIIKNGFESDTLLTRHLIHFYAKCKCLNSARTLFNS 132

Query: 396 I---EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           +   +  D  ++  +I GY R G    AL +F+ M++ G   DE+ +V VL+AC + G +
Sbjct: 133 VSRLDNLDTATFTALIGGYVRVGMFDDALQLFDEMQS-GFVLDELVIVTVLNACVNLGKL 191

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           D   E F  M+   +V      +  MI   G+ G  +EA +  R M
Sbjct: 192 DHACELFDEMDGCGNVVA----WNVMISGHGKRGYHKEAVEFYRKM 233


>Medtr4g015760.2 | PPR containing plant-like protein | HC |
           chr4:4766254-4759488 | 20130731
          Length = 673

 Score =  324 bits (830), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/599 (31%), Positives = 314/599 (52%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           +I G+L+  R              D+   + ++  Y +  ++ DA ++F   P+ DVV W
Sbjct: 98  VIHGFLKKVRI-----------DGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLW 146

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +         +  AC      S+++L 
Sbjct: 147 TSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV-----SVASACAQL---SNFKL- 197

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 198 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 244

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ MV+ Y  NG   +    F++M  K    N ++  +++      + ++   ++ E
Sbjct: 245 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 304

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A  LF+ MP++D ++WA + SGYA  G   E
Sbjct: 305 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHE 364

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+    +H  V+K G+E   F+G +L+ 
Sbjct: 365 SMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIE 424

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL +F  M      KP+ +
Sbjct: 425 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNV 484

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A D++ N
Sbjct: 485 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINN 544

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++P+++G Y+LLSN+Y+    W  A
Sbjct: 545 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSA 604

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 605 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAF 663



 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 229/479 (47%), Gaps = 38/479 (7%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           A +LF   P + V  WNA+L  Y   G   E   +F QM + +++S             I
Sbjct: 25  AHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVS-------------I 71

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVSWNTMISGYA 187
           EE       + D   +S        +++ +LG     F K  VR   D+   + +I  Y 
Sbjct: 72  EE-------RPDNYSVSIALKSCAGLRKLLLGKVIHGFLK-KVRIDGDMFVGSALIDLYT 123

Query: 188 QDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN----- 242
           + G M+ A  +F + P  DV  WT+++SGY Q+G  + A  FF +M    ++S +     
Sbjct: 124 KCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV 183

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQR 298
           ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A  LF  M  +
Sbjct: 184 SVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDK 243

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D +SW+ +++ YA  G   + L++F E+       N  T    L  CA I+ LE G +IH
Sbjct: 244 DIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIH 303

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
              V  G+E    V  AL+ MY KC S  +A D+F  + +KDV++W  + +GYA +G   
Sbjct: 304 ELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVH 363

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
           +++ VF +M + G +PD I +V +L+  S  G++ +       + K+     +      +
Sbjct: 364 ESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKN-GFENNQFIGASL 422

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
           I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A ++ ++M  H+
Sbjct: 423 IEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKLFYQMANHS 477



 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 16/348 (4%)

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
           S++ +I    Q   +  A  LF ++PH+ V+ W A++  Y   G   E  + F QM   +
Sbjct: 8   SFSEVIGNLLQYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVS 67

Query: 238 EISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW-------------NTMITGYGQNGD 284
            +S       Y  S  +     L + +  + +  +             + +I  Y + G 
Sbjct: 68  SVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQ 127

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE-IKRDGESLNRSTFSCALS 343
           +  A K+F   P+ D V W +IISGY Q+G  E AL  F   +  +  S +  T     S
Sbjct: 128 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 187

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
            CA ++  +LG+ +HG V + G +    + N+LL +Y K GSI  A+++F  + +KD++S
Sbjct: 188 ACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIIS 247

Query: 404 WNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN 463
           W+TM+A YA +G     L +F  M    +KP+ +T+V VL AC+    ++ G +  + + 
Sbjct: 248 WSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMK-IHELA 306

Query: 464 KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
            +Y     +   T ++D+  +    E+A DL   MP +    +W  L 
Sbjct: 307 VNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMP-KKDVIAWAVLF 353



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 124/281 (44%), Gaps = 29/281 (10%)

Query: 233 MPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           M    E S++ ++   +Q   +  A +LF+  P R V  WN ++  Y   G+  +   LF
Sbjct: 1   MAYGKEESFSEVIGNLLQYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLF 60

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M     VS                     IE + D  S+     S AL +CA +  L 
Sbjct: 61  RQMNNVSSVS---------------------IEERPDNYSV-----SIALKSCAGLRKLL 94

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           LGK IHG + K   +   FVG+AL+ +Y KCG + +A  VF    + DVV W ++I+GY 
Sbjct: 95  LGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYE 154

Query: 413 RHGFGKQALMVFESM-KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
           + G  + AL  F  M  +  V PD +T+V V SAC+       G    +   K   +   
Sbjct: 155 QSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRS-VHGFVKRKGLDNK 213

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
                 ++ L G+ G ++ A +L R M  +    SW  ++ 
Sbjct: 214 LCLANSLLHLYGKTGSIKNASNLFREMS-DKDIISWSTMVA 253



 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 168/381 (44%), Gaps = 61/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS--------- 54
           G  + A++VF   P+   V + ++ISGY ++    LA   F +M   + VS         
Sbjct: 126 GQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 185

Query: 55  -------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                           N +L  Y +   + +A  LF  M  KD+
Sbjct: 186 ASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDI 245

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW+ M++ YA NG   +  ++F +M  K    N ++   +L A      +EE  ++ + 
Sbjct: 246 ISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHEL 305

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
             ++    E      LM  ++K      A  LF++M  +DV++W  + SGYA +G + ++
Sbjct: 306 AVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHES 365

Query: 196 ----KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
               +N+       D      +++   + G+L +A            + N+    +++  
Sbjct: 366 MWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEV 425

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-----PQRDCVS 302
           Y + + ++ A ++F+ M  ++V +W+++I  YG +G   +A KLF  M      + + V+
Sbjct: 426 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVT 485

Query: 303 WAAIISGYAQTGHYEEALNMF 323
           + +I+S  + +G  +E +NMF
Sbjct: 486 FISILSACSHSGLIKEGINMF 506


>Medtr4g015760.3 | PPR containing plant-like protein | HC |
           chr4:4765180-4759488 | 20130731
          Length = 673

 Score =  324 bits (830), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/599 (31%), Positives = 314/599 (52%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           +I G+L+  R              D+   + ++  Y +  ++ DA ++F   P+ DVV W
Sbjct: 98  VIHGFLKKVRI-----------DGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLW 146

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +         +  AC      S+++L 
Sbjct: 147 TSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV-----SVASACAQL---SNFKL- 197

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 198 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 244

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ MV+ Y  NG   +    F++M  K    N ++  +++      + ++   ++ E
Sbjct: 245 IISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 304

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A  LF+ MP++D ++WA + SGYA  G   E
Sbjct: 305 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHE 364

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+    +H  V+K G+E   F+G +L+ 
Sbjct: 365 SMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIE 424

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL +F  M      KP+ +
Sbjct: 425 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNV 484

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A D++ N
Sbjct: 485 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINN 544

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++P+++G Y+LLSN+Y+    W  A
Sbjct: 545 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSA 604

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 605 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAF 663



 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 229/479 (47%), Gaps = 38/479 (7%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           A +LF   P + V  WNA+L  Y   G   E   +F QM + +++S             I
Sbjct: 25  AHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVS-------------I 71

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVSWNTMISGYA 187
           EE       + D   +S        +++ +LG     F K  VR   D+   + +I  Y 
Sbjct: 72  EE-------RPDNYSVSIALKSCAGLRKLLLGKVIHGFLK-KVRIDGDMFVGSALIDLYT 123

Query: 188 QDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN----- 242
           + G M+ A  +F + P  DV  WT+++SGY Q+G  + A  FF +M    ++S +     
Sbjct: 124 KCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV 183

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQR 298
           ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A  LF  M  +
Sbjct: 184 SVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDK 243

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D +SW+ +++ YA  G   + L++F E+       N  T    L  CA I+ LE G +IH
Sbjct: 244 DIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIH 303

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
              V  G+E    V  AL+ MY KC S  +A D+F  + +KDV++W  + +GYA +G   
Sbjct: 304 ELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVH 363

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
           +++ VF +M + G +PD I +V +L+  S  G++ +       + K+     +      +
Sbjct: 364 ESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKN-GFENNQFIGASL 422

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
           I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A ++ ++M  H+
Sbjct: 423 IEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKLFYQMANHS 477



 Score =  150 bits (378), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 16/348 (4%)

Query: 178 SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
           S++ +I    Q   +  A  LF ++PH+ V+ W A++  Y   G   E  + F QM   +
Sbjct: 8   SFSEVIGNLLQYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVS 67

Query: 238 EISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW-------------NTMITGYGQNGD 284
            +S       Y  S  +     L + +  + +  +             + +I  Y + G 
Sbjct: 68  SVSIEERPDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQ 127

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE-IKRDGESLNRSTFSCALS 343
           +  A K+F   P+ D V W +IISGY Q+G  E AL  F   +  +  S +  T     S
Sbjct: 128 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 187

Query: 344 TCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
            CA ++  +LG+ +HG V + G +    + N+LL +Y K GSI  A+++F  + +KD++S
Sbjct: 188 ACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIIS 247

Query: 404 WNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN 463
           W+TM+A YA +G     L +F  M    +KP+ +T+V VL AC+    ++ G +  + + 
Sbjct: 248 WSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMK-IHELA 306

Query: 464 KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
            +Y     +   T ++D+  +    E+A DL   MP +    +W  L 
Sbjct: 307 VNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMP-KKDVIAWAVLF 353



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 124/281 (44%), Gaps = 29/281 (10%)

Query: 233 MPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF 292
           M    E S++ ++   +Q   +  A +LF+  P R V  WN ++  Y   G+  +   LF
Sbjct: 1   MAYGKEESFSEVIGNLLQYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLF 60

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
             M     VS                     IE + D  S+     S AL +CA +  L 
Sbjct: 61  RQMNNVSSVS---------------------IEERPDNYSV-----SIALKSCAGLRKLL 94

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           LGK IHG + K   +   FVG+AL+ +Y KCG + +A  VF    + DVV W ++I+GY 
Sbjct: 95  LGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYE 154

Query: 413 RHGFGKQALMVFESM-KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
           + G  + AL  F  M  +  V PD +T+V V SAC+       G    +   K   +   
Sbjct: 155 QSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRS-VHGFVKRKGLDNK 213

Query: 472 SKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
                 ++ L G+ G ++ A +L R M  +    SW  ++ 
Sbjct: 214 LCLANSLLHLYGKTGSIKNASNLFREMS-DKDIISWSTMVA 253



 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 168/381 (44%), Gaps = 61/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS--------- 54
           G  + A++VF   P+   V + ++ISGY ++    LA   F +M   + VS         
Sbjct: 126 GQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 185

Query: 55  -------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                           N +L  Y +   + +A  LF  M  KD+
Sbjct: 186 ASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDI 245

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW+ M++ YA NG   +  ++F +M  K    N ++   +L A      +EE  ++ + 
Sbjct: 246 ISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHEL 305

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
             ++    E      LM  ++K      A  LF++M  +DV++W  + SGYA +G + ++
Sbjct: 306 AVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHES 365

Query: 196 ----KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
               +N+       D      +++   + G+L +A            + N+    +++  
Sbjct: 366 MWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEV 425

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-----PQRDCVS 302
           Y + + ++ A ++F+ M  ++V +W+++I  YG +G   +A KLF  M      + + V+
Sbjct: 426 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVT 485

Query: 303 WAAIISGYAQTGHYEEALNMF 323
           + +I+S  + +G  +E +NMF
Sbjct: 486 FISILSACSHSGLIKEGINMF 506


>Medtr6g018720.1 | PPR containing plant-like protein | HC |
           chr6:7213956-7209580 | 20130731
          Length = 535

 Score =  322 bits (826), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 169/449 (37%), Positives = 260/449 (57%), Gaps = 12/449 (2%)

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD 200
           SD ++     ++  + K  ++  ARK+FD MH R+ V+WN MI GY ++GD   A   F+
Sbjct: 82  SDVDVFIGTAIVAAYAKCGVVCDARKVFDLMHERNDVTWNAMIGGYLRNGDAKSALLAFE 141

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ--KNEISYNAMVAGYVQSNKMDMAR 258
           + P +   +W+ M+ G+ +NG    AR FFD++P   K+ + +  MV GY +  +M+ AR
Sbjct: 142 EMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTMMVDGYAKKGEMEDAR 201

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
           E+FE MP RN   W++M+ GY + GD+ +A  +F  +P R+   W ++I+GY Q G  E+
Sbjct: 202 EVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEK 261

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           AL  F E+  DG   +  T    LS CA +  L+ GKQ+H  +   G     FV + L+ 
Sbjct: 262 ALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLID 321

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY KCG +  A  VFE   E++V  WN MIAG+A +G   + L   + M+   ++PD +T
Sbjct: 322 MYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMEESNIRPDAVT 381

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            + VLSAC+H GL+    E    M ++Y +    +HY CM+DLLGRAGRL+EA +L++ M
Sbjct: 382 FITVLSACAHGGLVSEALEVISKM-EEYGIEMGIRHYGCMVDLLGRAGRLKEAYELIKRM 440

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMV-----FKMEPHNSGMYVLLSNLYAASGR 553
           P +P     GA++GA  IH + ++ E+  +M+       +  HN    VLLSN+YAAS +
Sbjct: 441 PMKPNETVLGAMIGACWIHSDMKMAEQVMKMIGVDSAACVNSHN----VLLSNIYAASEK 496

Query: 554 WADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
           W  +  +RS M D G +K+ G S + + N
Sbjct: 497 WEKSEMIRSSMVDGGSEKIPGCSSIILSN 525



 Score =  166 bits (420), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 165/349 (47%), Gaps = 46/349 (13%)

Query: 6   CDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN 65
           CD A +VF+ M  R+ V++NAMI GYLRN     A   F++MP +  VSW+ M+ G+ RN
Sbjct: 103 CD-ARKVFDLMHERNDVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARN 161

Query: 66  RRLGDARRLFDSMPQ--KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAA 123
                AR+ FD +P   KDVV W  M+ GYA+ G  ++AREVF  MP +N   W+ ++  
Sbjct: 162 GDTLTARKFFDKVPYELKDVVIWTMMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCG 221

Query: 124 YVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
           Y   G + EA                                 +F ++ VR++  WN+MI
Sbjct: 222 YCKKGDVMEA-------------------------------EAIFRRIPVRNLEIWNSMI 250

Query: 184 SGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK--- 236
           +GY Q+G   +A   F +        D FT  +++S   Q G LD  +     +  K   
Sbjct: 251 AGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIA 310

Query: 237 -NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM 295
            N+   + ++  Y +   +  AR +FE+   RNV  WN MI G+  NG   +  +  D M
Sbjct: 311 VNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRM 370

Query: 296 PQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC 340
            +     D V++  ++S  A  G   EAL +  +++  G  +    + C
Sbjct: 371 EESNIRPDAVTFITVLSACAHGGLVSEALEVISKMEEYGIEMGIRHYGC 419



 Score =  166 bits (420), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 199/394 (50%), Gaps = 16/394 (4%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+     ++  Y +   + DAR++FD M +++ V+WNAM+ GY +NG A  A   F +MP
Sbjct: 85  DVFIGTAIVAAYAKCGVVCDARKVFDLMHERNDVTWNAMIGGYLRNGDAKSALLAFEEMP 144

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL---ISWNCLMGGFVKRKMLGAARKL 167
            K  +SW+ ++  +  NG    A + FD K  +EL   + W  ++ G+ K+  +  AR++
Sbjct: 145 GKTRVSWSQMIGGFARNGDTLTARKFFD-KVPYELKDVVIWTMMVDGYAKKGEMEDAREV 203

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
           F+ M  R+   W++M+ GY + GD+ +A+ +F + P +++  W +M++GYVQNG  ++A 
Sbjct: 204 FELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKAL 263

Query: 228 TFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG----Y 279
             F +M     + +E +  ++++   Q   +D  +++   +  + ++    +++G    Y
Sbjct: 264 EAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMY 323

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + GD+  AR +F+   +R+   W A+I+G+A  G   E L     ++      +  TF 
Sbjct: 324 AKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMEESNIRPDAVTFI 383

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             LS CA    +    ++  ++ + G E G      ++ +  + G + EA ++ + +  K
Sbjct: 384 TVLSACAHGGLVSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGRLKEAYELIKRMPMK 443

Query: 400 -DVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
            +      MI     H   K A  V   MK IGV
Sbjct: 444 PNETVLGAMIGACWIHSDMKMAEQV---MKMIGV 474



 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 161/319 (50%), Gaps = 24/319 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVM 58
           +RNG   SAL  F  MP ++ VS++ MI G+ RN     AR  FDK+P   +D+V W +M
Sbjct: 128 LRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTMM 187

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           + GY +   + DAR +F+ MP+++   W++M+ GY + G   EA  +F ++P +N   WN
Sbjct: 188 VDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWN 247

Query: 119 GLLAAYVHNGRIEEACRLFD-------SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
            ++A YV NG  E+A   F           ++ ++S   ++    +   L A +++   +
Sbjct: 248 SMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVS---VLSACAQLGDLDAGKQMHHMI 304

Query: 172 HVRDVVSWNTMISG----YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
             + +     ++SG    YA+ GD+  A+ +F+    ++VF W AM++G+  NG  +E  
Sbjct: 305 ECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVL 364

Query: 228 TFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGY 279
            + D+M + N     +++  +++       +  A E+   M    +      +  M+   
Sbjct: 365 EYLDRMEESNIRPDAVTFITVLSACAHGGLVSEALEVISKMEEYGIEMGIRHYGCMVDLL 424

Query: 280 GQNGDIAQARKLFDMMPQR 298
           G+ G + +A +L   MP +
Sbjct: 425 GRAGRLKEAYELIKRMPMK 443



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 15/217 (6%)

Query: 287 QARKLFDMMPQRDCVSWA-AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
           Q +K+  +    +  +W+ +I +        + AL ++ + + D  + + +     L  C
Sbjct: 3   QVKKIGGITKSFNPSNWSHSIRNNSTNQASLKRALVLYKQTRHD-TTHDPTVIPQLLKAC 61

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
                L   K +H + +K G +   F+G A++  Y KCG + +A  VF+ + E++ V+WN
Sbjct: 62  DSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMHERNDVTWN 121

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN-- 463
            MI GY R+G  K AL+ FE M         ++   ++   +  G      ++F  +   
Sbjct: 122 AMIGGYLRNGDAKSALLAFEEMPG----KTRVSWSQMIGGFARNGDTLTARKFFDKVPYE 177

Query: 464 -KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
            KD  +      +T M+D   + G +E+A+++   MP
Sbjct: 178 LKDVVI------WTMMVDGYAKKGEMEDAREVFELMP 208


>Medtr5g020650.1 | PPR containing plant-like protein | HC |
           chr5:7912169-7910613 | 20130731
          Length = 518

 Score =  321 bits (822), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/449 (35%), Positives = 264/449 (58%), Gaps = 8/449 (1%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSG 216
           L  AR +FD++   + V WNTMI  Y+   D  +A  L+ Q  H  +    +T+  ++  
Sbjct: 61  LTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKA 120

Query: 217 YVQNGMLDEARTFFDQMPQK---NEI-SYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW 272
                 L E      Q+ ++   +E+ + N+++  Y  S  +  A  LF+ +PSR++ SW
Sbjct: 121 CSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSW 180

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           NTMI GY + G++  A K+F  MP+++ +SW ++I G+ +TG ++EAL +  ++   G  
Sbjct: 181 NTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIK 240

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            ++ T SC+LS CA + ALE GK IH  + K   +    +G AL+ MY KCG + +A  V
Sbjct: 241 PDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLV 300

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F  +E+K V +W  +I G+A HG G +AL  F  M+  G+KP   T   VL+ACSH GL+
Sbjct: 301 FSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLV 360

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           + G   F SM+  Y++ P  +HY CM+DLLGRAG L+EA++ + +MP +P AA WG+LL 
Sbjct: 361 EEGKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLN 420

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKV 572
           A  +H + ELG++  + + +++P + G Y+ L++++AA+G W +A  +RS +++ G+  +
Sbjct: 421 ACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNL 480

Query: 573 TGYSWVEVQNKIHKFTVGDCFHPEKDRIY 601
            G S + +    H+F  G   HP    +Y
Sbjct: 481 PGCSTITLNGVAHEFFAGAEPHPHVREMY 509



 Score =  133 bits (334), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 188/414 (45%), Gaps = 62/414 (14%)

Query: 42  DLFDKMPQRDLVSWNVMLTGY--VRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYA 99
            L  K   R  ++ + +LT Y  +    L  AR +FD +   + V WN M+  Y+ +   
Sbjct: 33  QLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDP 92

Query: 100 DEAREVFYQMPHK----NAISWNGLLAAY--------VHNGRIEEACRLFDSKSDWELIS 147
           +EA  +++QM H     NA ++  LL A          H   ++   R F S    E+ +
Sbjct: 93  EEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGS----EVYA 148

Query: 148 WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV 207
            N L+  +     + +A  LFD +  RD+VSWNTMI GY + G++  A  +F   P ++V
Sbjct: 149 TNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNV 208

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQM------PQKNEISYN-AMVAG------------Y 248
            +WT+M+ G+V+ GM  EA     QM      P K  +S + +  AG            Y
Sbjct: 209 ISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTY 268

Query: 249 VQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           +  NK+ +   L  A           +I  Y + G++ +A  +F  + ++   +W AII 
Sbjct: 269 IGKNKIKIDPVLGCA-----------LIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIG 317

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
           G+A  G   EAL+ F ++++ G      TF+  L+ C+    +E GK +  + + T Y  
Sbjct: 318 GFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLF-ESMSTFYNM 376

Query: 369 -------GCFVGNALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARH 414
                  GC V   LLG   + G + EA +  E +  K +   W +++     H
Sbjct: 377 KPVMEHYGCMVD--LLG---RAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLH 425



 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 160/330 (48%), Gaps = 27/330 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  Y  +     A  LFD +P RD+VSWN M+ GY++   +  A ++F +MP+K+V+
Sbjct: 150 NSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVI 209

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM------PHKNAISWNGLLAAYVHNGRIEEA----C 134
           SW +M+ G+ + G   EA  +  QM      P K  +S +  L+A    G +E+      
Sbjct: 210 SWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCS--LSACAGLGALEQGKWIHT 267

Query: 135 RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
            +  +K   + +    L+  +VK   +  A  +F K+  + V +W  +I G+A  G  S+
Sbjct: 268 YIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSE 327

Query: 195 AKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV 245
           A + F Q     +    FT+TA+++     G+++E ++ F+ M     +      Y  MV
Sbjct: 328 ALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMV 387

Query: 246 AGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQARK----LFDMMPQRDC 300
               ++  +  A+E  E+MP + N + W +++     +  +   ++    L ++ P+ D 
Sbjct: 388 DLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDG 447

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
             +  + S +A  G ++EA  +   IK  G
Sbjct: 448 -RYIHLASIHAAAGEWDEASQVRSHIKNKG 476



 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 40/285 (14%)

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
           SR ++++ +M     +  ++  AR +FD +   + V W  +I  Y+ +   EEAL ++ +
Sbjct: 47  SRLLTTYASM-----EFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQ 101

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +       N  TF   L  C+ ++AL    QIH Q++K G+ +  +  N+LL +Y   GS
Sbjct: 102 MLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGS 161

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGY-------------------------------ARH 414
           I  A+ +F+ +  +D+VSWNTMI GY                                R 
Sbjct: 162 IKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRT 221

Query: 415 GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD-YSVTPSSK 473
           G  K+AL + + M   G+KPD+IT+   LSAC+  G +++G      + K+   + P   
Sbjct: 222 GMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLG 281

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
               +ID+  + G +++A  +   +  +    +W A++G   +HG
Sbjct: 282 --CALIDMYVKCGEMKKALLVFSKLE-KKCVYTWTAIIGGFAVHG 323



 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 171/370 (46%), Gaps = 39/370 (10%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLA-----RDLFDKMPQR----DLVSWNV 57
           + AL +++ M   S + +NA    +L  A  +L+       +  ++ +R    ++ + N 
Sbjct: 93  EEALLLYHQMLHHS-IPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNS 151

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           +L  Y  +  +  A  LFD +P +D+VSWN M+ GY + G  + A ++F  MP KN ISW
Sbjct: 152 LLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISW 211

Query: 118 NGLLAAYVHNGRIEEACRLFDS------KSDWELISWNCLMGGFVKRKMLGAARKLF--- 168
             ++  +V  G  +EA  L         K D   I+ +C +        L   + +    
Sbjct: 212 TSMIVGFVRTGMHKEALCLLQQMLVAGIKPD--KITLSCSLSACAGLGALEQGKWIHTYI 269

Query: 169 --DKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEA 226
             +K+ + D V    +I  Y + G+M +A  +F +   + V+TWTA++ G+  +G   EA
Sbjct: 270 GKNKIKI-DPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEA 328

Query: 227 RTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPS-----RNVSSWNTMIT 277
             +F QM     +    ++ A++     +  ++  + LFE+M +       +  +  M+ 
Sbjct: 329 LDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGCMVD 388

Query: 278 GYGQNGDIAQARKLFDMMPQR-DCVSWAAIISGYAQTGHYE---EALNMFIEI--KRDGE 331
             G+ G + +A++  + MP + +   W ++++      H E   E     IE+  + DG 
Sbjct: 389 LLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGR 448

Query: 332 SLNRSTFSCA 341
            ++ ++   A
Sbjct: 449 YIHLASIHAA 458



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 149/328 (45%), Gaps = 24/328 (7%)

Query: 19  RSSVSYNAMISGY--LRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFD 76
           R  ++ + +++ Y  +  +  + AR +FD++   + V WN M+  Y  +    +A  L+ 
Sbjct: 41  RHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYH 100

Query: 77  SMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNG 128
            M    +     ++  +L   +      E  ++  Q+  +       + N LL  Y  +G
Sbjct: 101 QMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISG 160

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
            I+ A  LFD     +++SWN ++ G++K   +  A K+F  M  ++V+SW +MI G+ +
Sbjct: 161 SIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVR 220

Query: 189 DGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN-- 242
            G   +A  L  Q        D  T +  +S     G L++ + +      KN+I  +  
Sbjct: 221 TGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGK-WIHTYIGKNKIKIDPV 279

Query: 243 ---AMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR- 298
              A++  YV+  +M  A  +F  +  + V +W  +I G+  +G  ++A   F  M +  
Sbjct: 280 LGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAG 339

Query: 299 ---DCVSWAAIISGYAQTGHYEEALNMF 323
                 ++ A+++  + TG  EE  ++F
Sbjct: 340 IKPTSFTFTAVLTACSHTGLVEEGKSLF 367



 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 36/211 (17%)

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY--FKCGSIGEAN 390
           LN       L  C++I  L   KQIHGQ++K G        + LL  Y   +  ++  A 
Sbjct: 9   LNVEQTMSLLERCSNIGEL---KQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYAR 65

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS--- 447
            VF+ I   + V WNTMI  Y+     ++AL+++  M    +  +  T   +L ACS   
Sbjct: 66  MVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALS 125

Query: 448 --------HAGLIDR--GTEYFY--SMNKDYSVTPSSKHYTCMIDLLG------------ 483
                   H  +I R  G+E +   S+ + Y+++ S K    + DLL             
Sbjct: 126 ALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMID 185

Query: 484 ---RAGRLEEAQDLMRNMPFEPPAASWGALL 511
              + G +E A  + + MP E    SW +++
Sbjct: 186 GYIKCGNVEMAYKIFQAMP-EKNVISWTSMI 215


>Medtr3g089880.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:40854327-40856914 | 20130731
          Length = 616

 Score =  321 bits (822), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/456 (37%), Positives = 262/456 (57%), Gaps = 12/456 (2%)

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD 200
           SD ++     ++  + K  ++  ARK+FD M  R+VV+WN MI GY ++GD   A   F+
Sbjct: 82  SDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFE 141

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ--KNEISYNAMVAGYVQSNKMDMAR 258
           + P +   +W+ M+ G+ +NG    AR FFD++P   K+ + +  MV GY +  +M+ AR
Sbjct: 142 EMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAR 201

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
           E+FE MP RN   W++M+ GY + GD+ +A  +F  +P R+   W ++I+GY Q G  E+
Sbjct: 202 EVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEK 261

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           AL  F E+  DG   +  T    LS CA +  L+ GKQ+H  +   G     FV + L+ 
Sbjct: 262 ALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLID 321

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEIT 438
           MY KCG +  A  VFE   E++V  WN MIAG+A +G   + L   + M+   ++ D +T
Sbjct: 322 MYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVT 381

Query: 439 MVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
            + VLSAC+H GL+    E    M ++Y +    +HY CM+DLLGRAG+L+EA +L++ M
Sbjct: 382 FITVLSACAHGGLMSEALEVISKM-EEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRM 440

Query: 499 PFEPPAASWGALLGASRIHGNTELGEKAAEMVFK-----MEPHNSGMYVLLSNLYAASGR 553
           P +P     GA++GA  IH + ++ E+  +M+       +  HN    VLLSN+YAAS +
Sbjct: 441 PMKPNETVLGAMIGACWIHSDMKMAEQVMKMIGADSAACVNSHN----VLLSNIYAASEK 496

Query: 554 WADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTV 589
           W  A  +RS M D G +K+ GYS + + N     ++
Sbjct: 497 WEKAEMIRSSMVDGGSEKIPGYSSIILSNSAVDLSI 532



 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 188/355 (52%), Gaps = 12/355 (3%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+     ++  Y +   + DAR++FD MP+++VV+WNAM+ GY +NG A  A   F +MP
Sbjct: 85  DVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMP 144

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL---ISWNCLMGGFVKRKMLGAARKL 167
            K  +SW+ ++  +  NG    A + FD K  +EL   + W  ++ G+ K+  +  AR++
Sbjct: 145 GKTRVSWSQMIGGFARNGDTLTARKFFD-KVPYELKDVVIWTVMVDGYAKKGEMEDAREV 203

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
           F+ M  R+   W++M+ GY + GD+ +A+ +F + P +++  W +M++GYVQNG  ++A 
Sbjct: 204 FELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKAL 263

Query: 228 TFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG----Y 279
             F +M     + +E +  ++++   Q   +D  +++   +  + ++    +++G    Y
Sbjct: 264 EAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMY 323

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + GD+  AR +F+   +R+   W A+I+G+A  G   E L     ++     L+  TF 
Sbjct: 324 AKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFI 383

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
             LS CA    +    ++  ++ + G E G      ++ +  + G + EA ++ +
Sbjct: 384 TVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIK 438



 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 166/349 (47%), Gaps = 46/349 (13%)

Query: 6   CDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN 65
           CD A +VF+ MP R+ V++NAMI GYLRN     A   F++MP +  VSW+ M+ G+ RN
Sbjct: 103 CD-ARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARN 161

Query: 66  RRLGDARRLFDSMPQ--KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAA 123
                AR+ FD +P   KDVV W  M+ GYA+ G  ++AREVF  MP +N   W+ ++  
Sbjct: 162 GDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCG 221

Query: 124 YVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
           Y   G + EA                                 +F ++ VR++  WN+MI
Sbjct: 222 YCKKGDVMEA-------------------------------EAIFRRIPVRNLEIWNSMI 250

Query: 184 SGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK--- 236
           +GY Q+G   +A   F +        D FT  +++S   Q G LD  +     +  K   
Sbjct: 251 AGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIA 310

Query: 237 -NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM 295
            N+   + ++  Y +   +  AR +FE+   RNV  WN MI G+  NG   +  +  D M
Sbjct: 311 VNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRM 370

Query: 296 PQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC 340
            +     D V++  ++S  A  G   EAL +  +++  G  +    + C
Sbjct: 371 QESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGC 419



 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 161/319 (50%), Gaps = 24/319 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ--RDLVSWNVM 58
           +RNG   SAL  F  MP ++ VS++ MI G+ RN     AR  FDK+P   +D+V W VM
Sbjct: 128 LRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVM 187

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           + GY +   + DAR +F+ MP+++   W++M+ GY + G   EA  +F ++P +N   WN
Sbjct: 188 VDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWN 247

Query: 119 GLLAAYVHNGRIEEACRLFD-------SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
            ++A YV NG  E+A   F           ++ ++S   ++    +   L A +++   +
Sbjct: 248 SMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVS---VLSACAQLGDLDAGKQMHHMI 304

Query: 172 HVRDVVSWNTMISG----YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
             + +     ++SG    YA+ GD+  A+ +F+    ++VF W AM++G+  NG  +E  
Sbjct: 305 ECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVL 364

Query: 228 TFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTMITGY 279
            + D+M + N     +++  +++       M  A E+   M    +      +  M+   
Sbjct: 365 EYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGCMVDLL 424

Query: 280 GQNGDIAQARKLFDMMPQR 298
           G+ G + +A +L   MP +
Sbjct: 425 GRAGKLKEAYELIKRMPMK 443



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 15/217 (6%)

Query: 287 QARKLFDMMPQRDCVSWA-AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
           Q +K+  +    +  +W+ +I +        + AL ++ + + D  + + +     L  C
Sbjct: 3   QVKKIGGITKSFNPSNWSHSIRNNSTNQASLKRALVLYKQTRHD-TTHDPTVIPQLLKAC 61

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
                L   K +H + +K G +   F+G A++  Y KCG + +A  VF+ + E++VV+WN
Sbjct: 62  DSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWN 121

Query: 406 TMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMN-- 463
            MI GY R+G  K AL+ FE M         ++   ++   +  G      ++F  +   
Sbjct: 122 AMIGGYLRNGDAKSALLAFEEMP----GKTRVSWSQMIGGFARNGDTLTARKFFDKVPYE 177

Query: 464 -KDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
            KD  +      +T M+D   + G +E+A+++   MP
Sbjct: 178 LKDVVI------WTVMVDGYAKKGEMEDAREVFELMP 208


>Medtr5g008690.1 | PPR containing plant-like protein | HC |
           chr5:1878296-1873339 | 20130731
          Length = 764

 Score =  320 bits (820), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 197/601 (32%), Positives = 313/601 (52%), Gaps = 33/601 (5%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
           ++  Y     L DA+ + +     D + WN ++S Y +N   ++A  V+ +M  K  I  
Sbjct: 133 LINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPD 192

Query: 118 N----------GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
           +          G L  Y     + +A +  +S   W L   N L+  + +   L  AR+L
Sbjct: 193 DYTYPSVLKACGELLDYDSGVAVHKAIQ--ESSIKWSLFVHNALVFMYGRFGKLEVAREL 250

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGML 223
           FD M  RD VSWNTMIS YA  G   +A  LF    +    +++  W  +  G +  G  
Sbjct: 251 FDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNF 310

Query: 224 DEARTFFDQMPQKNEISYNAMVAG-----YVQSNKM------DMARELFEAMPSRNVSSW 272
             A   F QM    ++   AMV G     ++ + K+         R  F+     NV   
Sbjct: 311 KGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCFDVFD--NVK-- 366

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           NT+IT Y +  D+  A  LF  + ++  ++W A++SG+A     EE   +  E+ R+G  
Sbjct: 367 NTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLREMLREGVE 426

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVK--TGYETGCFVGNALLGMYFKCGSIGEAN 390
            N  T +  L  CA IA L+ GK+ H  +VK    ++    + N+L+ MY + G + EA 
Sbjct: 427 PNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRSGKVLEAR 486

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAG 450
            VF+ +  KD V++ +MI GY   G G+ AL +F  M+ + +KPD +TMV VL ACSH+G
Sbjct: 487 KVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVLIACSHSG 546

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           L+ +G   F  M + Y + P  +HY+CM+DL GRAG L++A++++  M  +P +A W  L
Sbjct: 547 LVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPTSAIWATL 606

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           +GA +IHGNT +GE AA  + +M+P +SG Y+L++N+YAA+ R       R+ MRD G +
Sbjct: 607 IGACKIHGNTVIGEWAAGKLLEMKPDHSGYYLLIANMYAAANRLDKEAEARTYMRDSGAK 666

Query: 571 KVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEE 630
           +  G +WV+V  ++  F  GD  +P    I   ++ L++ M+  GY  S  +V  + + E
Sbjct: 667 RTPGCAWVDVGRELCPFLAGDTSNPRSCEISPMMKRLNILMKDAGYAPSEGVVSSEEDFE 726

Query: 631 E 631
           E
Sbjct: 727 E 727



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/480 (21%), Positives = 202/480 (42%), Gaps = 99/480 (20%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV--------------------------- 83
           D + WN++++ YV+N    DA  ++  M  K V                           
Sbjct: 157 DPLHWNMVISLYVKNCLFEDAISVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVH 216

Query: 84  -------VSW-----NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIE 131
                  + W     NA++  Y + G  + ARE+F  MP ++ +SWN +++ Y   G  +
Sbjct: 217 KAIQESSIKWSLFVHNALVFMYGRFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWD 276

Query: 132 EACRLF----DSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW-------- 179
           EA RLF    ++  +  +I WN + GG +       A KLF +M  R V+          
Sbjct: 277 EAFRLFGCMREAGIERNIIIWNTIAGGCLHTGNFKGALKLFSQM--RAVIQLDSVAMVVG 334

Query: 180 --------------------------------NTMISGYAQDGDMSQAKNLFDQSPHQDV 207
                                           NT+I+ Y++  D++ A  LF +   + +
Sbjct: 335 LNACSHIGAVKLGKEIHGHAVRTCFDVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGL 394

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEA 263
            TW AM+SG+      +E      +M     + N ++  +++    +   +   +E    
Sbjct: 395 ITWNAMLSGFAHMDRSEEVSFLLREMLREGVEPNYVTIASILPLCARIANLQHGKEFHCY 454

Query: 264 MPSRN------VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE 317
           M  R       +  WN+++  Y ++G + +ARK+FD + ++D V++ ++I GY  +G  E
Sbjct: 455 MVKREEQFKGYLLLWNSLVEMYSRSGKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGE 514

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNAL 376
            AL +F E++R     +  T    L  C+    +  G+ +  ++++  G +      + +
Sbjct: 515 TALKLFAEMRRLNIKPDHVTMVAVLIACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCM 574

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVS-WNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           + ++ + G + +A +V  G+  K   + W T+I     H  G   +  + + K + +KPD
Sbjct: 575 VDLFGRAGLLDKAKEVITGMSCKPTSAIWATLIGACKIH--GNTVIGEWAAGKLLEMKPD 632



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 152/392 (38%), Gaps = 97/392 (24%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNV 57
           R G  + A  +F+ MP R  VS+N MIS Y     +  A  LF  M     +R+++ WN 
Sbjct: 240 RFGKLEVARELFDIMPARDDVSWNTMISCYASRGLWDEAFRLFGCMREAGIERNIIIWNT 299

Query: 58  MLTGYVRNRRLGDARRLFDSM---PQKDVVSW---------------------------- 86
           +  G +       A +LF  M    Q D V+                             
Sbjct: 300 IAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGHAVRTCF 359

Query: 87  -------NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEA------ 133
                  N +++ Y++    + A  +F ++  K  I+WN +L+ + H  R EE       
Sbjct: 360 DVFDNVKNTLITMYSRCRDLNHAYLLFRKIDEKGLITWNAMLSGFAHMDRSEEVSFLLRE 419

Query: 134 ---------------------------------CRLFDSKSDWE--LISWNCLMGGFVKR 158
                                            C +   +  ++  L+ WN L+  + + 
Sbjct: 420 MLREGVEPNYVTIASILPLCARIANLQHGKEFHCYMVKREEQFKGYLLLWNSLVEMYSRS 479

Query: 159 KMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMV 214
             +  ARK+FD +  +D V++ +MI GY   GD   A  LF +    +   D  T  A++
Sbjct: 480 GKVLEARKVFDSLSRKDEVTYTSMIMGYGVSGDGETALKLFAEMRRLNIKPDHVTMVAVL 539

Query: 215 SGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSRNV 269
                +G++ + +  F +M +   I      Y+ MV  + ++  +D A+E+   M  +  
Sbjct: 540 IACSHSGLVAQGQVLFRKMIEVYGIDPRVEHYSCMVDLFGRAGLLDKAKEVITGMSCKPT 599

Query: 270 SS-WNTMITGYGQNGDIA----QARKLFDMMP 296
           S+ W T+I     +G+       A KL +M P
Sbjct: 600 SAIWATLIGACKIHGNTVIGEWAAGKLLEMKP 631



 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 125/306 (40%), Gaps = 22/306 (7%)

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA---LSTCADIAALELGKQIHGQV 361
           A +  +    H   A   FI I+    S     F      L  C ++ +L  GKQIH  +
Sbjct: 59  ASLKDFITYNHLSNAFKTFIHIQHHHASSFDIIFQPIKHLLLGCTNLKSLSQGKQIHAHI 118

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           +  G      + + L+  Y     + +A  V E     D + WN +I+ Y ++   + A+
Sbjct: 119 ISLGIHQNPILVSKLINFYASVDLLADAQIVAECSNSFDPLHWNMVISLYVKNCLFEDAI 178

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDL 481
            V+  M + GV PD+ T   VL AC      D G     ++ ++ S+  S   +  ++ +
Sbjct: 179 SVYRRMLSKGVIPDDYTYPSVLKACGELLDYDSGVAVHKAI-QESSIKWSLFVHNALVFM 237

Query: 482 LGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMY 541
            GR G+LE A++L   MP      SW  ++      G   L ++A  +   M        
Sbjct: 238 YGRFGKLEVARELFDIMPARDD-VSWNTMISCYASRG---LWDEAFRLFGCMREAGIERN 293

Query: 542 VLLSNLYAA----SGRWADAGNMRSRMRD----------VGVQKVTGYSWVEVQNKIHKF 587
           +++ N  A     +G +  A  + S+MR           VG+   +    V++  +IH  
Sbjct: 294 IIIWNTIAGGCLHTGNFKGALKLFSQMRAVIQLDSVAMVVGLNACSHIGAVKLGKEIHGH 353

Query: 588 TVGDCF 593
            V  CF
Sbjct: 354 AVRTCF 359


>Medtr4g094592.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:38323846-38321575 | 20130731
          Length = 628

 Score =  320 bits (820), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/564 (33%), Positives = 297/564 (52%), Gaps = 33/564 (5%)

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPH--KNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           ++  ++++ Y++    + A +VF    H  KN  ++N ++A +V NG  + +  L+    
Sbjct: 65  LAITSIINMYSKCTLINYALKVFNYPTHHDKNVFAYNAIIAGFVSNGLSQHSFGLYKQMR 124

Query: 142 DWELI-----SWNCLMGG-------FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
              ++     ++ C++         F  +K+ G   K   ++   DV   + +++ Y + 
Sbjct: 125 LLGVVIPDKFTFPCVIRACGDAGDVFEVKKIHGLLFKFGLEL---DVFVGSALVTTYLKF 181

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV 249
             +  A  +F++ P +DV  W +MV+GY Q G  +EA   F +M +   +     V G +
Sbjct: 182 WLVVDAHEVFEELPVRDVVLWNSMVNGYAQIGCFEEALGMFRRMVENGVVPCRYTVTGVL 241

Query: 250 Q--------SNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
                     N   +   L +     +V   N +I  YG+    + A  +F++M ++D  
Sbjct: 242 SIYSVIGDFDNGQAVHGFLTKMGYHSSVVVLNALIDMYGKCKCASDALNVFEVMDEKDMF 301

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           SW +IIS + + G +   L +F  +  +    +  T +  L  C  +AAL  G++IHG +
Sbjct: 302 SWNSIISVHQRCGDHYGTLKLFDRMLGNKVQPDLVTVTTVLPACTHLAALMHGREIHGYM 361

Query: 362 VKTGYET--------GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           +  G              + NAL+ MY KCGS+ +A  VF+ + EKDV SWN MI GY  
Sbjct: 362 IVNGLGKEGRNNDFDDVLLNNALMDMYAKCGSMRDARMVFDNMTEKDVASWNIMITGYGM 421

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           HG+G +AL  F  M+   + P+EI+ VG+LSACSHAG++  G E+   M+  Y V PS +
Sbjct: 422 HGYGDEALDTFTRMRQAQLVPNEISFVGLLSACSHAGMVKEGLEFLAEMDSKYGVPPSVE 481

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HYTC+ID+L RAG+L EA DLM  MPF+     W ALL A RI+ +T+L E AA  V ++
Sbjct: 482 HYTCVIDMLCRAGKLVEAYDLMLTMPFKADPVGWRALLAACRIYKDTDLAEIAASKVIEL 541

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
           EP + G YVL+SN+Y   GR+     +R  MR   V+K  G SW+E+ N +H F  GD  
Sbjct: 542 EPGHCGNYVLMSNVYGVVGRYEQVSELRHTMRQQNVKKRPGCSWIELMNGVHVFLTGDRT 601

Query: 594 HPEKDRIYAFLEELDLKMRREGYV 617
           HP+ D IYA L  L   ++ +GYV
Sbjct: 602 HPQTDFIYAGLNSLTAVLQEQGYV 625



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 183/410 (44%), Gaps = 81/410 (19%)

Query: 9   ALRVFN--TMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQR--------- 50
           AL+VFN  T   ++  +YNA+I+G++ N     +  L+ +M       P +         
Sbjct: 83  ALKVFNYPTHHDKNVFAYNAIIAGFVSNGLSQHSFGLYKQMRLLGVVIPDKFTFPCVIRA 142

Query: 51  ------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
                                   D+   + ++T Y++   + DA  +F+ +P +DVV W
Sbjct: 143 CGDAGDVFEVKKIHGLLFKFGLELDVFVGSALVTTYLKFWLVVDAHEVFEELPVRDVVLW 202

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAAYVHNGRIE--EACRLFDSK 140
           N+M++GYAQ G  +EA  +F +M     +    +  G+L+ Y   G  +  +A   F +K
Sbjct: 203 NSMVNGYAQIGCFEEALGMFRRMVENGVVPCRYTVTGVLSIYSVIGDFDNGQAVHGFLTK 262

Query: 141 SDWE--LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
             +   ++  N L+  + K K    A  +F+ M  +D+ SWN++IS + + GD      L
Sbjct: 263 MGYHSSVVVLNALIDMYGKCKCASDALNVFEVMDEKDMFSWNSIISVHQRCGDHYGTLKL 322

Query: 199 FDQ----SPHQDVFTWTAM---------------VSGY-VQNGMLDEARTF-FDQMPQKN 237
           FD+        D+ T T +               + GY + NG+  E R   FD +    
Sbjct: 323 FDRMLGNKVQPDLVTVTTVLPACTHLAALMHGREIHGYMIVNGLGKEGRNNDFDDV---- 378

Query: 238 EISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQ 297
            +  NA++  Y +   M  AR +F+ M  ++V+SWN MITGYG +G   +A   F  M Q
Sbjct: 379 -LLNNALMDMYAKCGSMRDARMVFDNMTEKDVASWNIMITGYGMHGYGDEALDTFTRMRQ 437

Query: 298 RDCV----SWAAIISGYAQTGHYEEALNMFIEI-KRDGESLNRSTFSCAL 342
              V    S+  ++S  +  G  +E L    E+  + G   +   ++C +
Sbjct: 438 AQLVPNEISFVGLLSACSHAGMVKEGLEFLAEMDSKYGVPPSVEHYTCVI 487



 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 157/371 (42%), Gaps = 68/371 (18%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR----NRRLGDARRLFDS--M 78
           +A+++ YL+      A ++F+++P RD+V WN M+ GY +       LG  RR+ ++  +
Sbjct: 172 SALVTTYLKFWLVVDAHEVFEELPVRDVVLWNSMVNGYAQIGCFEEALGMFRRMVENGVV 231

Query: 79  P---------------------------------QKDVVSWNAMLSGYAQNGYADEAREV 105
           P                                    VV  NA++  Y +   A +A  V
Sbjct: 232 PCRYTVTGVLSIYSVIGDFDNGQAVHGFLTKMGYHSSVVVLNALIDMYGKCKCASDALNV 291

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKML 161
           F  M  K+  SWN +++ +   G      +LFD    +K   +L++   ++        L
Sbjct: 292 FEVMDEKDMFSWNSIISVHQRCGDHYGTLKLFDRMLGNKVQPDLVTVTTVLPACTHLAAL 351

Query: 162 GAARKLFDKMHVR------------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFT 209
              R++   M V             DV+  N ++  YA+ G M  A+ +FD    +DV +
Sbjct: 352 MHGREIHGYMIVNGLGKEGRNNDFDDVLLNNALMDMYAKCGSMRDARMVFDNMTEKDVAS 411

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMP 265
           W  M++GY  +G  DEA   F +M Q     NEIS+  +++    +  +    E    M 
Sbjct: 412 WNIMITGYGMHGYGDEALDTFTRMRQAQLVPNEISFVGLLSACSHAGMVKEGLEFLAEMD 471

Query: 266 SR-----NVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISG---YAQTGHY 316
           S+     +V  +  +I    + G + +A  L   MP + D V W A+++    Y  T   
Sbjct: 472 SKYGVPPSVEHYTCVIDMLCRAGKLVEAYDLMLTMPFKADPVGWRALLAACRIYKDTDLA 531

Query: 317 EEALNMFIEIK 327
           E A +  IE++
Sbjct: 532 EIAASKVIELE 542



 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 64/291 (21%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNVMLT---- 60
           AL VF  M  +   S+N++IS + R         LFD+M     Q DLV+   +L     
Sbjct: 288 ALNVFEVMDEKDMFSWNSIISVHQRCGDHYGTLKLFDRMLGNKVQPDLVTVTTVLPACTH 347

Query: 61  -----------GYVRNRRLG----------------------------DARRLFDSMPQK 81
                      GY+    LG                            DAR +FD+M +K
Sbjct: 348 LAALMHGREIHGYMIVNGLGKEGRNNDFDDVLLNNALMDMYAKCGSMRDARMVFDNMTEK 407

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRLF 137
           DV SWN M++GY  +GY DEA + F +M       N IS+ GLL+A  H G ++E     
Sbjct: 408 DVASWNIMITGYGMHGYGDEALDTFTRMRQAQLVPNEISFVGLLSACSHAGMVKEGLEFL 467

Query: 138 ---DSK--SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISG--YAQD 189
              DSK      +  + C++    +   L  A  L   M  + D V W  +++     +D
Sbjct: 468 AEMDSKYGVPPSVEHYTCVIDMLCRAGKLVEAYDLMLTMPFKADPVGWRALLAACRIYKD 527

Query: 190 GDMSQ--AKNLFDQSP-HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN 237
            D+++  A  + +  P H   +   + V G V  G  ++       M Q+N
Sbjct: 528 TDLAEIAASKVIELEPGHCGNYVLMSNVYGVV--GRYEQVSELRHTMRQQN 576



 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)

Query: 332 SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
           S +  T   +L  CA    L  GKQ+H  ++K G+        +++ MY KC  I  A  
Sbjct: 26  SYDIGTCITSLQQCAQTTNLTKGKQLHTHLLKNGFFASPLAITSIINMYSKCTLINYALK 85

Query: 392 VFE--GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK-PDEITMVGVLSACSH 448
           VF      +K+V ++N +IAG+  +G  + +  +++ M+ +GV  PD+ T   V+ AC  
Sbjct: 86  VFNYPTHHDKNVFAYNAIIAGFVSNGLSQHSFGLYKQMRLLGVVIPDKFTFPCVIRACGD 145

Query: 449 AG 450
           AG
Sbjct: 146 AG 147


>Medtr2g087120.1 | PPR containing plant-like protein | HC |
           chr2:36618951-36617398 | 20130731
          Length = 517

 Score =  320 bits (820), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 169/460 (36%), Positives = 258/460 (56%), Gaps = 12/460 (2%)

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQN----- 220
           K +    VSW + IS + ++ +  +A + F Q    +V     T   ++S    +     
Sbjct: 46  KPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTS 105

Query: 221 ---GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMIT 277
              G       F       + +   A++  Y +  K+D AR +F+ M  RN+ SWNTMI 
Sbjct: 106 ITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMID 165

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
           GY +NGD+  A KLFD +P ++ VSW  +I G+ +   YEEAL  F E++  G   +  T
Sbjct: 166 GYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVT 225

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
               +S CA++ AL LG  +H  V+K  +     V N+L+ MY +CG I  A  VF+G+ 
Sbjct: 226 VIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMS 285

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           ++++VSWN++I G+A +G   +AL  F SMK  G++P+ ++    L+ACSHAGLID G +
Sbjct: 286 QRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLK 345

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F  + +D+  +P  +HY C++DL  RAGRL+EA D+++ MP  P     G+LL A R  
Sbjct: 346 IFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQ 405

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
           G+ EL EK  +   ++ P     YVL SN+YAA G+W  A  +R  M++ G+QK   +S 
Sbjct: 406 GDVELAEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSS 465

Query: 578 VEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYV 617
           +E+ + IHKF  GD +H E D IY+ LE L  ++   GYV
Sbjct: 466 IEIDSGIHKFVSGDKYHEENDYIYSALELLSFELHLYGYV 505



 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 187/406 (46%), Gaps = 49/406 (12%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A+I  Y +  +   AR +FD+M  R+LVSWN M+ GY++N  + DA +LFD +P K+VV
Sbjct: 130 TALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVV 189

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEAC---------- 134
           SW  ++ G+ +    +EA E F +M         G++  +V    I  AC          
Sbjct: 190 SWTVVIGGFVKKECYEEALECFREM------QLAGVVPDFVTVIAIISACANLGALGLGL 243

Query: 135 ---RLFDSKSDWELIS-WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
              RL   K   + +   N L+  + +   +  AR++FD M  R++VSWN++I G+A +G
Sbjct: 244 WVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNG 303

Query: 191 DMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----Y 241
              +A + F     + +     ++T+ ++     G++DE    F  + + +  S     Y
Sbjct: 304 LADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHY 363

Query: 242 NAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQARKLF----DMMP 296
             +V  Y ++ ++  A ++ + MP   N     +++      GD+  A K+     ++ P
Sbjct: 364 GCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYP 423

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQ 356
             D  ++    + YA  G ++ A  +  E+K  G   N +            +++E+   
Sbjct: 424 GGDS-NYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLA-----------FSSIEIDSG 471

Query: 357 IHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           IH  V    Y E   ++ +AL  + F+    G   D F G +E DV
Sbjct: 472 IHKFVSGDKYHEENDYIYSALELLSFELHLYGYVPD-FSG-KESDV 515



 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 142/294 (48%), Gaps = 22/294 (7%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           DV+   A++  YA+ G  D AR VF QM  +N +SWN ++  Y+ NG +++A +LFD   
Sbjct: 125 DVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLP 184

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKMH----VRDVVSWNTMISGYAQDGDMSQA-- 195
              ++SW  ++GGFVK++    A + F +M     V D V+   +IS  A  G +     
Sbjct: 185 VKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLW 244

Query: 196 --KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNK 253
             + +  +    +V    +++  Y + G ++ AR  FD M Q+N +S+N+++ G+  +  
Sbjct: 245 VHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGL 304

Query: 254 MDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRD------CVSW 303
            D A   F +M       N  S+ + +T     G I +  K+F  + +RD         +
Sbjct: 305 ADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI-KRDHRNSPRIEHY 363

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQI 357
             ++  Y++ G  +EA ++   IK+     N       L+ C     +EL +++
Sbjct: 364 GCLVDLYSRAGRLKEAWDV---IKKMPMMPNEVVLGSLLAACRTQGDVELAEKV 414



 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 141/297 (47%), Gaps = 27/297 (9%)

Query: 17  PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFD 76
           P ++S+++ A +  +     F++           D++    ++  Y +  +L  AR +FD
Sbjct: 101 PSKTSITFGAALHTHAFKHGFAM----------NDVMVGTALIDMYAKCGKLDYARLVFD 150

Query: 77  SMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRL 136
            M  +++VSWN M+ GY +NG  D+A ++F ++P KN +SW  ++  +V     EEA   
Sbjct: 151 QMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALEC 210

Query: 137 FD----SKSDWELISWNCLMGGFVKRKMLGA---ARKLFDKMHVRDVVS-WNTMISGYAQ 188
           F     +    + ++   ++        LG      +L  K   RD V   N++I  YA+
Sbjct: 211 FREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYAR 270

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAM 244
            G +  A+ +FD    +++ +W +++ G+  NG+ D+A +FF  M ++    N +SY + 
Sbjct: 271 CGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSA 330

Query: 245 VAGYVQSNKMDMARELFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMP 296
           +     +  +D   ++F  +      S  +  +  ++  Y + G + +A  +   MP
Sbjct: 331 LTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMP 387



 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 18/277 (6%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  D A  VF+ M  R+ VS+N MI GY++N     A  LFDK+P +++VSW V++ G+V
Sbjct: 140 GKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFV 199

Query: 64  RNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEA----REVFYQMPHKNAI 115
           +     +A   F  M       D V+  A++S  A  G         R V  +    N  
Sbjct: 200 KKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVK 259

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
             N L+  Y   G IE A ++FD  S   L+SWN ++ GF    +   A   F  M    
Sbjct: 260 VLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEG 319

Query: 176 V----VSWNTMISGYAQDGDMSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEA 226
           +    VS+ + ++  +  G + +   +F     D      +  +  +V  Y + G L EA
Sbjct: 320 LEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEA 379

Query: 227 RTFFDQMP-QKNEISYNAMVAGYVQSNKMDMARELFE 262
                +MP   NE+   +++A       +++A ++ +
Sbjct: 380 WDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMK 416


>Medtr3g109380.2 | PPR containing plant-like protein | HC |
           chr3:50595856-50594240 | 20130731
          Length = 538

 Score =  319 bits (818), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 260/483 (53%), Gaps = 48/483 (9%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM---------PQK---- 236
           G +S A  LF Q  H ++FT+ A++  Y  N     A + F QM         P K    
Sbjct: 56  GHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFP 115

Query: 237 -----------------------------NEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
                                        + I+ NA++  Y +   +  A ++FE M  R
Sbjct: 116 FVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR 175

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           +V SWN++I GY + G +  AR+LFD MP R  VSW  +I+GY + G Y +AL++F E++
Sbjct: 176 DVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQ 235

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
             G   +  +    L  CA + ALE+GK IH    K G+     + NAL+ MY KCG I 
Sbjct: 236 MVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCID 295

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA ++F+ + EKDV+SW+TMI G A HG G +A+ +FE M  + V P+EIT +GVL ACS
Sbjct: 296 EAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACS 355

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H GL D G +YF  M+  Y + P  +HY C+IDLLGR+G L +A D +  MP +P +  W
Sbjct: 356 HTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIW 415

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
            +LL + RIH N ++   A + + ++EP  SG YVLL+N+YA  G+W D  N+R  +R+ 
Sbjct: 416 NSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNK 475

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV 627
            ++K  G S +EV N + +F   D   P    ++  LE L L   R      T  ++  V
Sbjct: 476 RIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEGLALNQTR------TNDLMEPV 529

Query: 628 EEE 630
           EE+
Sbjct: 530 EED 532



 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 186/396 (46%), Gaps = 41/396 (10%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM---------PHKNAI-----S 116
           A  LF  +   ++ ++NA++  YA N +   A  VF QM         P K        S
Sbjct: 61  ATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKS 120

Query: 117 WNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV 176
             G+L    H   ++    ++   +D+  I+ N L+  + K   L  A K+F++M  RDV
Sbjct: 121 CTGILC---HRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDV 177

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-- 234
           +SWN++I GY + G M+ A+ LFD  P + + +WT M++GY + G   +A   F +M   
Sbjct: 178 ISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMV 237

Query: 235 --QKNEISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYGQNGDIAQA 288
             + +EIS  A++    Q   +++ + +          R     N +I  Y + G I +A
Sbjct: 238 GIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEA 297

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
             LFD + ++D +SW+ +I G A  G   EA+ +F E+ +   + N  TF   L  C+  
Sbjct: 298 WNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHT 357

Query: 349 AALELGKQIHGQVVKTGYET-------GCFVGNALLGMYFKCGSIGEANDVFEGIEEK-D 400
              + G + +  V+   Y         GC +   LLG   + G +G+A D    +  K D
Sbjct: 358 GLWDEGLK-YFDVMSASYHIEPEIEHYGCLID--LLG---RSGCLGQALDTISKMPIKPD 411

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
              WN++++    H   + A++  + +  + ++P+E
Sbjct: 412 SRIWNSLLSSCRIHRNLQIAVIAVKQL--MELEPEE 445



 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 160/325 (49%), Gaps = 27/325 (8%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           ++ NA+I  Y +    + A  +F++M  RD++SWN ++ GYV+  ++  AR LFD MP +
Sbjct: 147 ITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVR 206

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEA--CR 135
            +VSW  M++GY + G   +A +VF +M       + IS   +L A    G +E      
Sbjct: 207 TIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIH 266

Query: 136 LFDSKSDWELISWNC--LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
           ++  K+ +   +  C  L+  + K   +  A  LFD++  +DV+SW+TMI G A  G   
Sbjct: 267 MYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGY 326

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YN 242
           +A  LF++      +P++  F    +   +   G+ DE   +FD M     I      Y 
Sbjct: 327 EAIQLFEEMCKVRVAPNEITFLGVLLACSH--TGLWDEGLKYFDVMSASYHIEPEIEHYG 384

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSS-WNTMITG--YGQNGDIA--QARKLFDMMPQ 297
            ++    +S  +  A +    MP +  S  WN++++     +N  IA    ++L ++ P+
Sbjct: 385 CLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPE 444

Query: 298 RDCVSWAAIISGYAQTGHYEEALNM 322
               ++  + + YA+ G +E+  N+
Sbjct: 445 ESG-NYVLLANMYAEHGKWEDVSNI 468



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 21/238 (8%)

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           +L  C  I  L   K+IH  VVK       F+   +L      G +  A  +F+ +   +
Sbjct: 16  SLKNCFKITQL---KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPN 72

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESM---KTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           + ++N +I  YA +     A+ VF  M    T  V PD+ T   V+ +C+       G +
Sbjct: 73  IFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQ 132

Query: 458 ---YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS 514
                Y    D+     +     +ID+  + G L  A  +   M       SW +L    
Sbjct: 133 VHGLVYKFGADFHCITENA----LIDMYTKFGDLTNACKVFEEMSHR-DVISWNSL---- 183

Query: 515 RIHGNTELGE--KAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
            I G  +LG+   A E+   M       +  +   Y   G + DA ++   M+ VG++
Sbjct: 184 -IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIE 240


>Medtr3g109380.1 | PPR containing plant-like protein | HC |
           chr3:50595856-50594240 | 20130731
          Length = 538

 Score =  319 bits (818), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/483 (36%), Positives = 260/483 (53%), Gaps = 48/483 (9%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM---------PQK---- 236
           G +S A  LF Q  H ++FT+ A++  Y  N     A + F QM         P K    
Sbjct: 56  GHVSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFP 115

Query: 237 -----------------------------NEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
                                        + I+ NA++  Y +   +  A ++FE M  R
Sbjct: 116 FVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHR 175

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           +V SWN++I GY + G +  AR+LFD MP R  VSW  +I+GY + G Y +AL++F E++
Sbjct: 176 DVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQ 235

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
             G   +  +    L  CA + ALE+GK IH    K G+     + NAL+ MY KCG I 
Sbjct: 236 MVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCID 295

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA ++F+ + EKDV+SW+TMI G A HG G +A+ +FE M  + V P+EIT +GVL ACS
Sbjct: 296 EAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACS 355

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H GL D G +YF  M+  Y + P  +HY C+IDLLGR+G L +A D +  MP +P +  W
Sbjct: 356 HTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIW 415

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
            +LL + RIH N ++   A + + ++EP  SG YVLL+N+YA  G+W D  N+R  +R+ 
Sbjct: 416 NSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNK 475

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV 627
            ++K  G S +EV N + +F   D   P    ++  LE L L   R      T  ++  V
Sbjct: 476 RIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEGLALNQTR------TNDLMEPV 529

Query: 628 EEE 630
           EE+
Sbjct: 530 EED 532



 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 186/396 (46%), Gaps = 41/396 (10%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM---------PHKNAI-----S 116
           A  LF  +   ++ ++NA++  YA N +   A  VF QM         P K        S
Sbjct: 61  ATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKS 120

Query: 117 WNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV 176
             G+L    H   ++    ++   +D+  I+ N L+  + K   L  A K+F++M  RDV
Sbjct: 121 CTGILC---HRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDV 177

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-- 234
           +SWN++I GY + G M+ A+ LFD  P + + +WT M++GY + G   +A   F +M   
Sbjct: 178 ISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMV 237

Query: 235 --QKNEISYNAMVAGYVQSNKMDMARELFEAMPS----RNVSSWNTMITGYGQNGDIAQA 288
             + +EIS  A++    Q   +++ + +          R     N +I  Y + G I +A
Sbjct: 238 GIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEA 297

Query: 289 RKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
             LFD + ++D +SW+ +I G A  G   EA+ +F E+ +   + N  TF   L  C+  
Sbjct: 298 WNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHT 357

Query: 349 AALELGKQIHGQVVKTGYET-------GCFVGNALLGMYFKCGSIGEANDVFEGIEEK-D 400
              + G + +  V+   Y         GC +   LLG   + G +G+A D    +  K D
Sbjct: 358 GLWDEGLK-YFDVMSASYHIEPEIEHYGCLID--LLG---RSGCLGQALDTISKMPIKPD 411

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
              WN++++    H   + A++  + +  + ++P+E
Sbjct: 412 SRIWNSLLSSCRIHRNLQIAVIAVKQL--MELEPEE 445



 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 160/325 (49%), Gaps = 27/325 (8%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           ++ NA+I  Y +    + A  +F++M  RD++SWN ++ GYV+  ++  AR LFD MP +
Sbjct: 147 ITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVR 206

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEA--CR 135
            +VSW  M++GY + G   +A +VF +M       + IS   +L A    G +E      
Sbjct: 207 TIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIH 266

Query: 136 LFDSKSDWELISWNC--LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
           ++  K+ +   +  C  L+  + K   +  A  LFD++  +DV+SW+TMI G A  G   
Sbjct: 267 MYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGY 326

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YN 242
           +A  LF++      +P++  F    +   +   G+ DE   +FD M     I      Y 
Sbjct: 327 EAIQLFEEMCKVRVAPNEITFLGVLLACSH--TGLWDEGLKYFDVMSASYHIEPEIEHYG 384

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSS-WNTMITG--YGQNGDIA--QARKLFDMMPQ 297
            ++    +S  +  A +    MP +  S  WN++++     +N  IA    ++L ++ P+
Sbjct: 385 CLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPE 444

Query: 298 RDCVSWAAIISGYAQTGHYEEALNM 322
               ++  + + YA+ G +E+  N+
Sbjct: 445 ESG-NYVLLANMYAEHGKWEDVSNI 468



 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 21/238 (8%)

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           +L  C  I  L   K+IH  VVK       F+   +L      G +  A  +F+ +   +
Sbjct: 16  SLKNCFKITQL---KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPN 72

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESM---KTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
           + ++N +I  YA +     A+ VF  M    T  V PD+ T   V+ +C+       G +
Sbjct: 73  IFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQ 132

Query: 458 ---YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS 514
                Y    D+     +     +ID+  + G L  A  +   M       SW +L    
Sbjct: 133 VHGLVYKFGADFHCITENA----LIDMYTKFGDLTNACKVFEEMSHR-DVISWNSL---- 183

Query: 515 RIHGNTELGE--KAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
            I G  +LG+   A E+   M       +  +   Y   G + DA ++   M+ VG++
Sbjct: 184 -IFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIE 240


>Medtr4g073930.1 | PPR containing plant-like protein | HC |
           chr4:28099513-28096632 | 20130731
          Length = 597

 Score =  319 bits (817), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 267/485 (55%), Gaps = 40/485 (8%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
           ARK+FDKM VR++ SWN MISGY + G M QA+ +F + P +D  +W AMV GY   G  
Sbjct: 100 ARKVFDKMDVRNLYSWNNMISGYVKLGMMKQARGVFYKMPEKDCVSWNAMVVGYAHCGRF 159

Query: 224 DEARTFFDQMPQ----KNEISYNAMVA--------------------------------- 246
            EA  F+  M +     NE ++ +++                                  
Sbjct: 160 SEALRFYGWMRRVCVGYNEFTFASVLIVCVKLKEFELCRQIHGQVVVVGFLSNVVVSSSI 219

Query: 247 --GYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWA 304
              Y +  KM+ A  LF+ M  R++ +W T+++GY   GD+  A ++F  MP+++  SW 
Sbjct: 220 VDAYAKCGKMEDAMRLFDDMTVRDIPAWTTLVSGYALCGDMDSAAEMFSQMPKKNTYSWT 279

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT 364
           A+I GYA+ G   +AL +F ++       +  TFS  L  CA IA+L+ GKQIH  +++ 
Sbjct: 280 ALIGGYARNGMAHKALGVFRKMIMHRVRPDEFTFSSCLFACATIASLKHGKQIHAFLLRN 339

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE-KDVVSWNTMIAGYARHGFGKQALMV 423
                  V +A++ MY KCGS+  A  +F   E  +DVV WNTMI+  A +G+GK+A+++
Sbjct: 340 NIRPNPVVVSAVVDMYAKCGSMETARRIFNFTEHMQDVVLWNTMISALAHYGYGKEAVLM 399

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
              M   GVKP+  T+V +L+ACSH+GL+  G ++F SM  D+ V P  +HY  +IDLLG
Sbjct: 400 LNDMLKSGVKPNRNTLVAILNACSHSGLVCDGLQFFKSMTNDHGVIPDLEHYAHLIDLLG 459

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVL 543
           RAG   E+   +  +  +P      +LL   R +G+  +G + AE + K +PH+S  Y L
Sbjct: 460 RAGCFVESMKDLFMIDCKPGDHVLYSLLCVCRPNGSIGVGREVAEFLIKWQPHSSAAYGL 519

Query: 544 LSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAF 603
           LS++YAA   W      R  M +  +++    SW+E++N++H FTV D  HP K+ +Y+ 
Sbjct: 520 LSSIYAALVTWGLVDEARHIMDERRLRQDRSTSWIEIENEVHAFTVSDGLHPLKETLYSA 579

Query: 604 LEELD 608
           L  L+
Sbjct: 580 LGHLN 584



 Score =  162 bits (411), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 176/347 (50%), Gaps = 19/347 (5%)

Query: 18  RRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDS 77
           R +++  N +I  Y     +  AR +FDKM  R+L SWN M++GYV+   +  AR +F  
Sbjct: 78  RPTTLIANHLIHMYFCCGDYVRARKVFDKMDVRNLYSWNNMISGYVKLGMMKQARGVFYK 137

Query: 78  MPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIE----EA 133
           MP+KD VSWNAM+ GYA  G   EA   FY    +  + +N    A V    ++    E 
Sbjct: 138 MPEKDCVSWNAMVVGYAHCGRFSEALR-FYGWMRRVCVGYNEFTFASVLIVCVKLKEFEL 196

Query: 134 CRLFDSKSD-----WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
           CR    +         ++  + ++  + K   +  A +LFD M VRD+ +W T++SGYA 
Sbjct: 197 CRQIHGQVVVVGFLSNVVVSSSIVDAYAKCGKMEDAMRLFDDMTVRDIPAWTTLVSGYAL 256

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAM 244
            GDM  A  +F Q P ++ ++WTA++ GY +NGM  +A   F +M     + +E ++++ 
Sbjct: 257 CGDMDSAAEMFSQMPKKNTYSWTALIGGYARNGMAHKALGVFRKMIMHRVRPDEFTFSSC 316

Query: 245 VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQ-RD 299
           +        +   +++   +   N+     +++     Y + G +  AR++F+     +D
Sbjct: 317 LFACATIASLKHGKQIHAFLLRNNIRPNPVVVSAVVDMYAKCGSMETARRIFNFTEHMQD 376

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCA 346
            V W  +IS  A  G+ +EA+ M  ++ + G   NR+T    L+ C+
Sbjct: 377 VVLWNTMISALAHYGYGKEAVLMLNDMLKSGVKPNRNTLVAILNACS 423



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 27/345 (7%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A +VF+ M  R+  S+N MISGY++      AR +F KMP++D VSWN M+ GY    R 
Sbjct: 100 ARKVFDKMDVRNLYSWNNMISGYVKLGMMKQARGVFYKMPEKDCVSWNAMVVGYAHCGRF 159

Query: 69  GDARRLFDSMPQKDVVSWN-----AMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLA- 122
            +A R +  M ++  V +N     ++L    +    +  R++  Q+     +S   + + 
Sbjct: 160 SEALRFYGWM-RRVCVGYNEFTFASVLIVCVKLKEFELCRQIHGQVVVVGFLSNVVVSSS 218

Query: 123 ---AYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
              AY   G++E+A RLFD  +  ++ +W  L+ G+     + +A ++F +M  ++  SW
Sbjct: 219 IVDAYAKCGKMEDAMRLFDDMTVRDIPAWTTLVSGYALCGDMDSAAEMFSQMPKKNTYSW 278

Query: 180 NTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEART----FFD 231
             +I GYA++G   +A  +F +        D FT+++ +        L   +        
Sbjct: 279 TALIGGYARNGMAHKALGVFRKMIMHRVRPDEFTFSSCLFACATIASLKHGKQIHAFLLR 338

Query: 232 QMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS-RNVSSWNTMITGYGQNGDIAQARK 290
              + N +  +A+V  Y +   M+ AR +F      ++V  WNTMI+     G   +A  
Sbjct: 339 NNIRPNPVVVSAVVDMYAKCGSMETARRIFNFTEHMQDVVLWNTMISALAHYGYGKEAVL 398

Query: 291 LFDMM------PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           + + M      P R+  +  AI++  + +G   + L  F  +  D
Sbjct: 399 MLNDMLKSGVKPNRN--TLVAILNACSHSGLVCDGLQFFKSMTND 441



 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 43/273 (15%)

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE-TGCFVG 373
           H  +A++    +   G  L+    +  L  C+D  + + GK +H  +  TG++     + 
Sbjct: 25  HLSDAVSSLDVLHPRGIRLSSHILATLLRRCSDTKSYKEGKLVHLHLKLTGFKRPTTLIA 84

Query: 374 NALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVK 433
           N L+ MYF CG    A  VF+ ++ +++ SWN MI+GY + G  KQA  VF  M     +
Sbjct: 85  NHLIHMYFCCGDYVRARKVFDKMDVRNLYSWNNMISGYVKLGMMKQARGVFYKMP----E 140

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY----SVTPSSKHYTCM----------- 478
            D ++   ++   +H G       ++  M +        T +S    C+           
Sbjct: 141 KDCVSWNAMVVGYAHCGRFSEALRFYGWMRRVCVGYNEFTFASVLIVCVKLKEFELCRQI 200

Query: 479 -------------------IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGN 519
                              +D   + G++E+A  L  +M      A W  L+    + G+
Sbjct: 201 HGQVVVVGFLSNVVVSSSIVDAYAKCGKMEDAMRLFDDMTVRDIPA-WTTLVSGYALCGD 259

Query: 520 TELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
               + AAEM  +M   N+  +  L   YA +G
Sbjct: 260 M---DSAAEMFSQMPKKNTYSWTALIGGYARNG 289



 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 103/246 (41%), Gaps = 46/246 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G  + A+R+F+ M  R   ++  ++SGY        A ++F +MP+++  SW  ++ G
Sbjct: 225 KCGKMEDAMRLFDDMTVRDIPAWTTLVSGYALCGDMDSAAEMFSQMPKKNTYSWTALIGG 284

Query: 62  YVRN----RRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKN 113
           Y RN    + LG  R++     + D  ++++ L   A        +++   +       N
Sbjct: 285 YARNGMAHKALGVFRKMIMHRVRPDEFTFSSCLFACATIASLKHGKQIHAFLLRNNIRPN 344

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
            +  + ++  Y   G +E A R+F+                                 H+
Sbjct: 345 PVVVSAVVDMYAKCGSMETARRIFNFTE------------------------------HM 374

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEAR 227
           +DVV WNTMIS  A  G   +A  + +        P+++  T  A+++    +G++ +  
Sbjct: 375 QDVVLWNTMISALAHYGYGKEAVLMLNDMLKSGVKPNRN--TLVAILNACSHSGLVCDGL 432

Query: 228 TFFDQM 233
            FF  M
Sbjct: 433 QFFKSM 438


>Medtr4g108890.1 | PPR containing plant-like protein | HC |
           chr4:45133263-45138694 | 20130731
          Length = 548

 Score =  318 bits (815), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/494 (36%), Positives = 272/494 (55%), Gaps = 16/494 (3%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQD 206
           L+  +     L  A KLF ++H      WN MI  YA      ++   ++Q    +   D
Sbjct: 54  LLSFYAASGKLQHAHKLFIQIHNPKTTVWNHMIRAYASSITPWKSVQYYNQMVLNACEPD 113

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQK---NEISYNA-MVAGYVQSNKMDMARELFE 262
            FT++ ++S  V+ G++ E       +  K   +++  N  ++  Y     ++ AR +F+
Sbjct: 114 GFTYSFLLSACVRGGLVREGEQLHGIVLAKGYCSDVFVNTNLINFYADCGGVEQARYVFD 173

Query: 263 AMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
            M  R+V SWN+++ GY + GD   AR +F+ +P R+ VSW  +I+GYAQ G   EAL++
Sbjct: 174 DMTQRSVVSWNSLLVGYVKCGDFDAARNVFEEIPVRNVVSWTTMIAGYAQNGKCVEALSL 233

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F +++R    L++      LS CA++  L+LG+ IH  V +   +    + NAL+ MY  
Sbjct: 234 FGQMRRARVELDQVVLVAVLSACAELGDLKLGRWIHWYVQERQRQASVRLNNALMHMYAS 293

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV-----KPDEI 437
           CG I EA  +F  +  K  VSW  +I  +A+ G GK+AL +F+ M + GV     +PD  
Sbjct: 294 CGIIDEAYRMFTKMSWKTTVSWTIIIMAFAKQGLGKEALDLFKDMLSDGVGKSGIRPDGT 353

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T +  L ACSHAG ++ G   F SM   + ++   +HY CM+DLL RAG L+EA  L+  
Sbjct: 354 TFIAALCACSHAGFVEEGCRIFESMIHTWRISLQIEHYGCMVDLLSRAGCLDEAYRLIET 413

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAE-MVFKMEPHN--SGMYVLLSNLYAASGRW 554
           MPF+P  A WGALLG  RIH N+EL  + A  +V +++  +  +G  VLLSN+YA +GRW
Sbjct: 414 MPFKPNDAIWGALLGGCRIHKNSELASRVANTLVAELDSTDQAAGYLVLLSNIYAFAGRW 473

Query: 555 ADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRRE 614
            D   +R +M ++GV+K  G SW+++   +H F VGD  H     IY  L E+  + R E
Sbjct: 474 QDVIAVRQKMIEMGVKKPPGQSWIQIYGVVHNFVVGDMTHKHSSLIYETLCEITEQARVE 533

Query: 615 GYVSSTKLVLHDVE 628
           GY      VL D E
Sbjct: 534 GYKPDITEVLLDAE 547



 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 181/413 (43%), Gaps = 58/413 (14%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----QKD 82
           ++S Y  + +   A  LF ++       WN M+  Y  +     + + ++ M     + D
Sbjct: 54  LLSFYAASGKLQHAHKLFIQIHNPKTTVWNHMIRAYASSITPWKSVQYYNQMVLNACEPD 113

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS----WNGLLAAYVHNGRIEEACRLFD 138
             +++ +LS   + G   E  ++   +  K   S       L+  Y   G +E+A  +FD
Sbjct: 114 GFTYSFLLSACVRGGLVREGEQLHGIVLAKGYCSDVFVNTNLINFYADCGGVEQARYVFD 173

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
             +   ++SWN L+ G+VK     AAR +F+++ VR+VVSW TMI+GYAQ+G   +A +L
Sbjct: 174 DMTQRSVVSWNSLLVGYVKCGDFDAARNVFEEIPVRNVVSWTTMIAGYAQNGKCVEALSL 233

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAR 258
           F                     G +  AR   DQ      +   A+++   +   + + R
Sbjct: 234 F---------------------GQMRRARVELDQ------VVLVAVLSACAELGDLKLGR 266

Query: 259 ELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
            +   +  R    +V   N ++  Y   G I +A ++F  M  +  VSW  II  +A+ G
Sbjct: 267 WIHWYVQERQRQASVRLNNALMHMYASCGIIDEAYRMFTKMSWKTTVSWTIIIMAFAKQG 326

Query: 315 HYEEALNMFIEIKRDGES-----LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET- 368
             +EAL++F ++  DG        + +TF  AL  C+    +E G +I   ++ T   + 
Sbjct: 327 LGKEALDLFKDMLSDGVGKSGIRPDGTTFIAALCACSHAGFVEEGCRIFESMIHTWRISL 386

Query: 369 -----GCFVGNALLGMYFKCGSIGEANDVFEGIEEK--DVVSWNTMIAGYARH 414
                GC V      +  + G + EA  + E +  K  D + W  ++ G   H
Sbjct: 387 QIEHYGCMV-----DLLSRAGCLDEAYRLIETMPFKPNDAI-WGALLGGCRIH 433



 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 56/240 (23%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G  D+A  VF  +P R+ VS+  MI+GY +N +   A  LF +M +  +    V+L 
Sbjct: 191 VKCGDFDAARNVFEEIPVRNVVSWTTMIAGYAQNGKCVEALSLFGQMRRARVELDQVVLV 250

Query: 61  G-------------------YVRNRR--------------------LGDARRLFDSMPQK 81
                               YV+ R+                    + +A R+F  M  K
Sbjct: 251 AVLSACAELGDLKLGRWIHWYVQERQRQASVRLNNALMHMYASCGIIDEAYRMFTKMSWK 310

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGL-----LAAYVHNGRIEE 132
             VSW  ++  +A+ G   EA ++F  M      K+ I  +G      L A  H G +EE
Sbjct: 311 TTVSWTIIIMAFAKQGLGKEALDLFKDMLSDGVGKSGIRPDGTTFIAALCACSHAGFVEE 370

Query: 133 ACRLFDS-----KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--DVVSWNTMISG 185
            CR+F+S     +   ++  + C++    +   L  A +L + M  +  D + W  ++ G
Sbjct: 371 GCRIFESMIHTWRISLQIEHYGCMVDLLSRAGCLDEAYRLIETMPFKPNDAI-WGALLGG 429



 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 96/231 (41%), Gaps = 11/231 (4%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L TC +     L  QIH QV+  G      +   LL  Y   G +  A+ +F  I     
Sbjct: 22  LQTCNNTETNIL--QIHTQVILNGLSHKHNIIAKLLSFYAASGKLQHAHKLFIQIHNPKT 79

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
             WN MI  YA      +++  +  M     +PD  T   +LSAC   GL+  G E  + 
Sbjct: 80  TVWNHMIRAYASSITPWKSVQYYNQMVLNACEPDGFTYSFLLSACVRGGLVREG-EQLHG 138

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           +             T +I+     G +E+A+ +  +M  +    SW +LL      G  +
Sbjct: 139 IVLAKGYCSDVFVNTNLINFYADCGGVEQARYVFDDMT-QRSVVSWNSLLV-----GYVK 192

Query: 522 LGE-KAAEMVFKMEP-HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
            G+  AA  VF+  P  N   +  +   YA +G+  +A ++  +MR   V+
Sbjct: 193 CGDFDAARNVFEEIPVRNVVSWTTMIAGYAQNGKCVEALSLFGQMRRARVE 243


>Medtr1g067280.1 | PPR containing plant-like protein | HC |
           chr1:28986458-28983697 | 20130731
          Length = 684

 Score =  318 bits (814), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 305/607 (50%), Gaps = 57/607 (9%)

Query: 73  RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEE 132
           R F      D      +++ YA++     AR VF ++PHKN+ SWN ++ AY       +
Sbjct: 74  RFFPFAITPDNFIATKLITFYAKSNLIRNARNVFDKIPHKNSFSWNSMIIAYTSKSLFND 133

Query: 133 ACRLFDS---KSDWELISWNCLMGGFVKRKMLGA------ARKLFDKMHVR----DVVSW 179
           A  LF S    +D  +   N  M   +K   L +      A+++     +R    DV   
Sbjct: 134 ALSLFASFVSSTDNNVSPDNFTMTSILKTLALSSSVCYKSAKQIHCSALLRGFYSDVCVL 193

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------ 233
           N +++ Y + G +  A+ +FD+   +D+ TW AM+ GY Q+G  +E +  + +M      
Sbjct: 194 NALVTCYCRCGRIEIARKVFDEMTERDIVTWNAMIGGYSQSGFYEECKRLYLEMLGLEGK 253

Query: 234 ----------------PQKNEISY--------------------NAMVAGYVQSNKMDMA 257
                            Q  ++S+                    NA++A Y +   ++ A
Sbjct: 254 GILPNAVTIGSVMQACGQSKDLSFGMEVHRFMKDDGIETDVFLCNAIIAMYAKCGSLNYA 313

Query: 258 RELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE 317
           RELF+ M  ++  S+ ++I+GY  NG + +A  +   +      +W  +I G  Q   +E
Sbjct: 314 RELFDEMGEKDEVSYRSIISGYMINGFVDEALDVLKGIENPGLSTWNDVIPGMVQNNQFE 373

Query: 318 EALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
            AL++  E+   G +L  N  T S  +   +  + L   K++HG  ++  Y+   +V  A
Sbjct: 374 RALDLVREMPGFGLNLKPNVVTLSSIIPLFSYFSNLRGLKEVHGYAIRRSYDQNIYVATA 433

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPD 435
           ++  Y K G I  A  VF+  + + ++ W ++I  YA HG    AL ++  M   G++PD
Sbjct: 434 IVDSYAKLGFIHLARRVFDQSQSRSLIIWTSIIYAYASHGDASLALGLYNQMLDRGIQPD 493

Query: 436 EITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
            +T+  VL+AC+H+GL++   + F +M   + + P  +HY CM+ +L RAG+L EA+  +
Sbjct: 494 PVTLTSVLTACAHSGLVNEAWDVFNAMPSKHGIQPVVEHYACMVGVLSRAGKLSEAEKFI 553

Query: 496 RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWA 555
             MPFEP A  WGALL  + I+ + E+G+ A + +F++EP ++G Y++++NLY+ +GRW 
Sbjct: 554 SKMPFEPTAKVWGALLNGASIYDDVEIGKFACDHLFEIEPEHTGNYIIMANLYSRAGRWE 613

Query: 556 DAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           +A  +R RM   G  K+ G SW+E   K+  F   D  +   D IYA L+ L   MR EG
Sbjct: 614 EARKIRERMEKTGSPKIRGSSWIETSGKLLGFIAKDMSNEMSDEIYALLKGLLGLMREEG 673

Query: 616 YVSSTKL 622
           Y+   +L
Sbjct: 674 YILQEEL 680



 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 127/561 (22%), Positives = 231/561 (41%), Gaps = 110/561 (19%)

Query: 8   SALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ------------------ 49
           +A  VF+ +P ++S S+N+MI  Y   + F+ A  LF                       
Sbjct: 102 NARNVFDKIPHKNSFSWNSMIIAYTSKSLFNDALSLFASFVSSTDNNVSPDNFTMTSILK 161

Query: 50  --------------------------RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                      D+   N ++T Y R  R+  AR++FD M ++D+
Sbjct: 162 TLALSSSVCYKSAKQIHCSALLRGFYSDVCVLNALVTCYCRCGRIEIARKVFDEMTERDI 221

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACR-------- 135
           V+WNAM+ GY+Q+G+ +E + ++ +M     +   G+L   V  G + +AC         
Sbjct: 222 VTWNAMIGGYSQSGFYEECKRLYLEML---GLEGKGILPNAVTIGSVMQACGQSKDLSFG 278

Query: 136 ------LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
                 + D   + ++   N ++  + K   L  AR+LFD+M  +D VS+ ++ISGY  +
Sbjct: 279 MEVHRFMKDDGIETDVFLCNAIIAMYAKCGSLNYARELFDEMGEKDEVSYRSIISGYMIN 338

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP------QKNEISYNA 243
           G + +A ++     +  + TW  ++ G VQN   + A     +MP      + N ++ ++
Sbjct: 339 GFVDEALDVLKGIENPGLSTWNDVIPGMVQNNQFERALDLVREMPGFGLNLKPNVVTLSS 398

Query: 244 MVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
           ++  +   + +   +E+      R    N+     ++  Y + G I  AR++FD    R 
Sbjct: 399 IIPLFSYFSNLRGLKEVHGYAIRRSYDQNIYVATAIVDSYAKLGFIHLARRVFDQSQSRS 458

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHG 359
            + W +II  YA  G    AL ++ ++   G   +  T +  L+ CA             
Sbjct: 459 LIIWTSIIYAYASHGDASLALGLYNQMLDRGIQPDPVTLTSVLTACA------------- 505

Query: 360 QVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA-RHGFGK 418
                                   G + EA DVF  +  K  +    ++  YA   G   
Sbjct: 506 ----------------------HSGLVNEAWDVFNAMPSKHGI--QPVVEHYACMVGVLS 541

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS-SKHYTC 477
           +A  + E+ K I   P E T     +  + A + D      ++ +  + + P  + +Y  
Sbjct: 542 RAGKLSEAEKFISKMPFEPTAKVWGALLNGASIYDDVEIGKFACDHLFEIEPEHTGNYII 601

Query: 478 MIDLLGRAGRLEEAQDLMRNM 498
           M +L  RAGR EEA+ +   M
Sbjct: 602 MANLYSRAGRWEEARKIRERM 622



 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 51/309 (16%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNL----FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
           D+ ++ + I        + Q K L    F  +   D F  T +++ Y ++ ++  AR  F
Sbjct: 48  DIAAYGSAIQHCTNHRLIRQGKQLHARFFPFAITPDNFIATKLITFYAKSNLIRNARNVF 107

Query: 231 DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS------------------------ 266
           D++P KN  S+N+M+  Y   +  + A  LF +  S                        
Sbjct: 108 DKIPHKNSFSWNSMIIAYTSKSLFNDALSLFASFVSSTDNNVSPDNFTMTSILKTLALSS 167

Query: 267 --------------------RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAI 306
                                +V   N ++T Y + G I  ARK+FD M +RD V+W A+
Sbjct: 168 SVCYKSAKQIHCSALLRGFYSDVCVLNALVTCYCRCGRIEIARKVFDEMTERDIVTWNAM 227

Query: 307 ISGYAQTGHYEEALNMFIE---IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVK 363
           I GY+Q+G YEE   +++E   ++  G   N  T    +  C     L  G ++H  +  
Sbjct: 228 IGGYSQSGFYEECKRLYLEMLGLEGKGILPNAVTIGSVMQACGQSKDLSFGMEVHRFMKD 287

Query: 364 TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV 423
            G ET  F+ NA++ MY KCGS+  A ++F+ + EKD VS+ ++I+GY  +GF  +AL V
Sbjct: 288 DGIETDVFLCNAIIAMYAKCGSLNYARELFDEMGEKDEVSYRSIISGYMINGFVDEALDV 347

Query: 424 FESMKTIGV 432
            + ++  G+
Sbjct: 348 LKGIENPGL 356



 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 168/376 (44%), Gaps = 65/376 (17%)

Query: 5   HCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVR 64
           HC + LR F +         NA+++ Y R  R  +AR +FD+M +RD+V+WN M+ GY +
Sbjct: 178 HCSALLRGFYS----DVCVLNALVTCYCRCGRIEIARKVFDEMTERDIVTWNAMIGGYSQ 233

Query: 65  NRRLGDARRLF------------------------------------------DSMPQKD 82
           +    + +RL+                                          D   + D
Sbjct: 234 SGFYEECKRLYLEMLGLEGKGILPNAVTIGSVMQACGQSKDLSFGMEVHRFMKDDGIETD 293

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD 142
           V   NA+++ YA+ G  + ARE+F +M  K+ +S+  +++ Y+ NG ++EA  +     +
Sbjct: 294 VFLCNAIIAMYAKCGSLNYARELFDEMGEKDEVSYRSIISGYMINGFVDEALDVLKGIEN 353

Query: 143 WELISWNCLMGGFVKRKMLGAARKLFDKMH------VRDVVSWNTMISGYAQDGDMSQAK 196
             L +WN ++ G V+      A  L  +M         +VV+ +++I  ++   ++   K
Sbjct: 354 PGLSTWNDVIPGMVQNNQFERALDLVREMPGFGLNLKPNVVTLSSIIPLFSYFSNLRGLK 413

Query: 197 NL----FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSN 252
            +      +S  Q+++  TA+V  Y + G +  AR  FDQ   ++ I + +++  Y    
Sbjct: 414 EVHGYAIRRSYDQNIYVATAIVDSYAKLGFIHLARRVFDQSQSRSLIIWTSIIYAYASHG 473

Query: 253 KMDMARELFEAMPSRNVS----SWNTMITGYGQNGDIAQARKLFDMMPQRDCVS-----W 303
              +A  L+  M  R +     +  +++T    +G + +A  +F+ MP +  +      +
Sbjct: 474 DASLALGLYNQMLDRGIQPDPVTLTSVLTACAHSGLVNEAWDVFNAMPSKHGIQPVVEHY 533

Query: 304 AAIISGYAQTGHYEEA 319
           A ++   ++ G   EA
Sbjct: 534 ACMVGVLSRAGKLSEA 549



 Score =  109 bits (273), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/426 (21%), Positives = 169/426 (39%), Gaps = 98/426 (23%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------------- 47
           R G  + A +VF+ M  R  V++NAMI GY ++  +   + L+ +M              
Sbjct: 202 RCGRIEIARKVFDEMTERDIVTWNAMIGGYSQSGFYEECKRLYLEMLGLEGKGILPNAVT 261

Query: 48  ----------------------------PQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP 79
                                        + D+   N ++  Y +   L  AR LFD M 
Sbjct: 262 IGSVMQACGQSKDLSFGMEVHRFMKDDGIETDVFLCNAIIAMYAKCGSLNYARELFDEMG 321

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS 139
           +KD VS+ +++SGY  NG+ DEA +V   + +    +WN ++   V N + E A  L   
Sbjct: 322 EKDEVSYRSIISGYMINGFVDEALDVLKGIENPGLSTWNDVIPGMVQNNQFERALDLVRE 381

Query: 140 KS-----------------------------------------DWELISWNCLMGGFVKR 158
                                                      D  +     ++  + K 
Sbjct: 382 MPGFGLNLKPNVVTLSSIIPLFSYFSNLRGLKEVHGYAIRRSYDQNIYVATAIVDSYAKL 441

Query: 159 KMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMV 214
             +  AR++FD+   R ++ W ++I  YA  GD S A  L+    D+    D  T T+++
Sbjct: 442 GFIHLARRVFDQSQSRSLIIWTSIIYAYASHGDASLALGLYNQMLDRGIQPDPVTLTSVL 501

Query: 215 SGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSRNV 269
           +    +G+++EA   F+ MP K+ I      Y  MV    ++ K+  A +    MP    
Sbjct: 502 TACAHSGLVNEAWDVFNAMPSKHGIQPVVEHYACMVGVLSRAGKLSEAEKFISKMPFEPT 561

Query: 270 SS-WNTMITGYGQNGDIAQAR----KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
           +  W  ++ G     D+   +     LF++ P+    ++  + + Y++ G +EEA  +  
Sbjct: 562 AKVWGALLNGASIYDDVEIGKFACDHLFEIEPEHTG-NYIIMANLYSRAGRWEEARKIRE 620

Query: 325 EIKRDG 330
            +++ G
Sbjct: 621 RMEKTG 626



 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 82/203 (40%), Gaps = 29/203 (14%)

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +K  G  L+ + +  A+  C +   +  GKQ+H +          F+   L+  Y K   
Sbjct: 40  LKTHGGGLDIAAYGSAIQHCTNHRLIRQGKQLHARFFPFAITPDNFIATKLITFYAKSNL 99

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI---GVKPDEITMVGV 442
           I  A +VF+ I  K+  SWN+MI  Y        AL +F S  +     V PD  TM  +
Sbjct: 100 IRNARNVFDKIPHKNSFSWNSMIIAYTSKSLFNDALSLFASFVSSTDNNVSPDNFTMTSI 159

Query: 443 L-------SACS------HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLE 489
           L       S C       H   + RG   FYS      V   +   TC      R GR+E
Sbjct: 160 LKTLALSSSVCYKSAKQIHCSALLRG---FYS-----DVCVLNALVTCYC----RCGRIE 207

Query: 490 EAQDLMRNMPFEPPAASWGALLG 512
            A+ +   M  E    +W A++G
Sbjct: 208 IARKVFDEMT-ERDIVTWNAMIG 229


>Medtr1g085700.1 | pentatricopeptide (PPR) repeat protein, putative
           | HC | chr1:38304139-38306748 | 20130731
          Length = 739

 Score =  317 bits (813), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/659 (30%), Positives = 316/659 (47%), Gaps = 74/659 (11%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN------------ 56
           A   F+ +P +S++++NA++   + +  F+L+   +  M +      N            
Sbjct: 89  AFLFFSQLPHKSNLAWNAILRALIGSNNFTLSIQFYHSMLRHGFAPDNYTYPLVLKACSS 148

Query: 57  ---------------------------VMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAM 89
                                       ++  +V+   L DAR++FD M  +D+ +W A+
Sbjct: 149 LQAIEIGRWVYHNILINEEKANLFVQCALIDMFVKCESLEDARKVFDEMNVRDLATWTAL 208

Query: 90  LSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEAC-RLFDSKSDWELISW 148
           + G   NG  DEA  +F +M         GL A  V    +   C RL +          
Sbjct: 209 ICGNVWNGEWDEAVLLFRKM------RLEGLKADSVIVASVLPVCGRLME---------- 252

Query: 149 NCLMGGFVKRKMLGAA-RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV 207
               G  +   M G A R  FD     D+   N +I  Y + G   +A  +F     +D+
Sbjct: 253 ----GLKLGMAMHGCALRSGFDS----DLYVSNAIIDMYCKCGYPDEACLVFSYMVFRDI 304

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEA 263
            +W+ +++GY QNGM  E+   + +M       NEI  + ++    +       +E+   
Sbjct: 305 VSWSTLIAGYSQNGMYKESFELYVRMVNMGLTTNEIVVSTVLPALGKLKLFKQGKEMHNF 364

Query: 264 MPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
           +  +    +V   + ++  Y   G I +A  +F  M   D + W ++I+GY   G ++ A
Sbjct: 365 VLKQGLLTDVVVGSALVDMYANCGSIKEAESIFRNMLDMDIMVWNSLIAGYNLVGDFQSA 424

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
              F EI       N  T    L  C  I AL  GK+IH    ++G      VGN+L+ M
Sbjct: 425 FFTFREIWVAEHRPNHITLVSVLPICTQIGALRQGKEIHCYATRSGLGLNISVGNSLIDM 484

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y KCG +     VF  +  K+ +++NTMI+    HG G++ L  +E M   G+KP+++T 
Sbjct: 485 YSKCGFLELGVKVFNQMMVKNTITYNTMISACGAHGLGEKGLKFYEQMNEAGMKPNKVTF 544

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
           + +LSACSHAGL+DRG   + SM  DY + P  +HY+CM+DL+GR G L+ A   +  MP
Sbjct: 545 ISLLSACSHAGLVDRGWLLYNSMVNDYGIKPDMEHYSCMVDLIGRTGDLDGAYKFITTMP 604

Query: 500 FEPPAASWGALLGASRIHGNTELGEK-AAEMVFKMEPHNSGMYVLLSNLYAASGRWADAG 558
             P A   G+LLGA R+H   EL ++  AE +F++   +SG YVLLSNLYA+  RW D  
Sbjct: 605 VTPDANVLGSLLGACRLHNKVELADQLTAEHIFQLNTEDSGHYVLLSNLYASGKRWEDMS 664

Query: 559 NMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYV 617
            +RS ++D G++K  G SW++V + I  F     F+PE  +I   L+ L L M+ E Y+
Sbjct: 665 KVRSLIKDKGLEKKPGSSWIQVGHSIFVFHATSIFYPELAKIEETLDSLFLVMKNEDYI 723



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 112/250 (44%), Gaps = 13/250 (5%)

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           ++  Y   G    A   F  +P +  ++W AI+     + ++  ++  +  + R G + +
Sbjct: 76  LVNAYVNFGSHHYAFLFFSQLPHKSNLAWNAILRALIGSNNFTLSIQFYHSMLRHGFAPD 135

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
             T+   L  C+ + A+E+G+ ++  ++    +   FV  AL+ M+ KC S+ +A  VF+
Sbjct: 136 NYTYPLVLKACSSLQAIEIGRWVYHNILINEEKANLFVQCALIDMFVKCESLEDARKVFD 195

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH------ 448
            +  +D+ +W  +I G   +G   +A+++F  M+  G+K D + +  VL  C        
Sbjct: 196 EMNVRDLATWTALICGNVWNGEWDEAVLLFRKMRLEGLKADSVIVASVLPVCGRLMEGLK 255

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
            G+   G       + D  V+        +ID+  + G  +EA  +   M F     SW 
Sbjct: 256 LGMAMHGCALRSGFDSDLYVS------NAIIDMYCKCGYPDEACLVFSYMVFR-DIVSWS 308

Query: 509 ALLGASRIHG 518
            L+     +G
Sbjct: 309 TLIAGYSQNG 318


>Medtr5g008840.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr5:1959596-1956593 | 20130731
          Length = 831

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 205/686 (29%), Positives = 332/686 (48%), Gaps = 107/686 (15%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQR----------- 50
           A R+F  MP R++VS N +I+  ++N     A D +D M       P             
Sbjct: 90  ACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACG 149

Query: 51  ----------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNA 88
                                 ++   N +L  Y +     DA R+F+ + + + V++  
Sbjct: 150 GLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTT 209

Query: 89  MLSGYAQNGYADEAREVFYQMPHK----NAISWNGLL---AAYVHNGRIEEACRLFDSKS 141
           M+ G +Q     E  E+F  M  K    +++S + +L   A  V  G  +++  L  +  
Sbjct: 210 MMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQ 269

Query: 142 -------------DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
                        + +L   N L+  + K   + +A  +F+ +    VVSWN MISGY  
Sbjct: 270 GKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGN 329

Query: 189 DGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM 244
             D  +A   F +        D  T+  M++  V++G +   R  FD M   + IS+NA+
Sbjct: 330 RCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAI 389

Query: 245 VAGYVQSNKMDMARELFEAM------PSR------------------------------- 267
           ++GY QS     A ELF  M      P R                               
Sbjct: 390 LSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGF 449

Query: 268 --NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
             +V   +++I  Y + G +  ++ +F  + + D V W ++I+G++     ++AL  F  
Sbjct: 450 YDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKR 509

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           +++ G   +  +F+   S+CA +++L  G+QIH Q++K GY    FVG++L+ MY KCG 
Sbjct: 510 MRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGD 569

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           +G A   F+ +  K++V+WN MI GYA +G+G +A+ +++ M + G KPD+IT V VL+A
Sbjct: 570 VGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTA 629

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
           CSH+ L+D G E F SM + + V P   HYTC+ID LGR GR  E + ++  MP++    
Sbjct: 630 CSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTI 689

Query: 506 SWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMR 565
            W  +L + R+H N  L ++AAE + ++ P NS  YVLL+N+Y++ GRW DA  +R  M 
Sbjct: 690 VWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMS 749

Query: 566 DVGVQKVTGYSWVE----VQNKIHKF 587
           D  + K  GYS  E    VQNK   F
Sbjct: 750 DNQIHKDPGYSRSEFKYDVQNKTSFF 775



 Score =  186 bits (473), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/550 (23%), Positives = 238/550 (43%), Gaps = 126/550 (22%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGD 70
           R+F       +   N +I  Y +  + + A  +FDK+P +++ S+N +L+ + ++  L  
Sbjct: 30  RIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQY 89

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF-----YQMPHKNAISW-------- 117
           A RLF  MP+++ VS N +++   +NGY  +A + +     Y+    + I++        
Sbjct: 90  ACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACG 149

Query: 118 ---------------------------NGLLAAYVHNGRIEEACRLFDSKSDWELISWNC 150
                                      N LL  Y   G  E+A R+F+   +   +++  
Sbjct: 150 GLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTT 209

Query: 151 LMGGFVKRKMLGAARKLF------------------------------------------ 168
           +MGG  +   +    +LF                                          
Sbjct: 210 MMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQ 269

Query: 169 -DKMHV--------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQ 219
             ++H         RD+   N+++  YA+ GDM  A+N+F+      V +W  M+SGY  
Sbjct: 270 GKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGN 329

Query: 220 NGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTM 275
               ++A   F +M     + ++++Y  M+   V+S  + + R++F+ M S ++ SWN +
Sbjct: 330 RCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAI 389

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
           ++GY Q+ D  +A +LF  M       W                           ++ +R
Sbjct: 390 LSGYNQSADHGEAVELFRKMQ----FQW---------------------------QNPDR 418

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
           +T +  LS+CA++  LE GKQ+H    K G+    +V ++L+ +Y KCG +  +  VF  
Sbjct: 419 TTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSK 478

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
           + E DVV WN+MIAG++ +   + AL  F+ M+  G  P E +   + S+C+    + +G
Sbjct: 479 LSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQG 538

Query: 456 TEYFYSMNKD 465
            +    + KD
Sbjct: 539 QQIHAQIIKD 548



 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 140/665 (21%), Positives = 267/665 (40%), Gaps = 162/665 (24%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP------------------ 48
           + A RVF  +   + V++  M+ G  +  +     +LF  M                   
Sbjct: 190 EDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVIC 249

Query: 49  ---------------------------------QRDLVSWNVMLTGYVRNRRLGDARRLF 75
                                            +RDL   N +L  Y +   +  A  +F
Sbjct: 250 AKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVF 309

Query: 76  DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIE 131
           +++ +  VVSWN M+SGY     +++A E F +M       + +++  +L A V +G ++
Sbjct: 310 ENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVK 369

Query: 132 EACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----------------- 174
              ++FD  S   LISWN ++ G+ +    G A +LF KM  +                 
Sbjct: 370 VGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCA 429

Query: 175 ----------------------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTA 212
                                 DV   +++I+ Y++ G M  +K++F +    DV  W +
Sbjct: 430 ELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNS 489

Query: 213 MVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFEAMPS-- 266
           M++G+  N +  +A   F +M Q     +E S+  + +   + + +   +++   +    
Sbjct: 490 MIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDG 549

Query: 267 --RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
              NV   ++++  Y + GD+  AR  FDMMP ++ V+W  +I GYA  G+  EA++++ 
Sbjct: 550 YVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYK 609

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           ++   GE  +  TF   L+ C+  A ++ G +I   +++                     
Sbjct: 610 DMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQK-------------------- 649

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
                   FE + + D   +  +I    R G   +  ++ ++M     K D I    VLS
Sbjct: 650 --------FEVVPKLD--HYTCIIDCLGRVGRFNEVEVILDTMP---YKDDTIVWEVVLS 696

Query: 445 AC---SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           +C   ++  L  R  E  + +N       +S  Y  + ++    GR ++AQ ++R+    
Sbjct: 697 SCRVHANVSLAKRAAEELHRLNP-----RNSAPYVLLANMYSSMGRWDDAQ-VVRD---- 746

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMR 561
                   L+  ++IH +   G   +E  FK +  N   +   +N+Y+  G   DA  +R
Sbjct: 747 --------LMSDNQIHKDP--GYSRSE--FKYDVQNKTSF--FANMYSCFGNLDDAQFVR 792

Query: 562 SRMRD 566
               D
Sbjct: 793 DLTSD 797



 Score =  130 bits (327), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 159/306 (51%), Gaps = 18/306 (5%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
           N ++  Y + N++  A  +F+ +P +N+ S+N +++ + ++ ++  A +LF  MP+R+ V
Sbjct: 44  NHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTV 103

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS--TFSCALSTCADIAALELGKQIHG 359
           S   II+   + G+  +AL+ + ++    ES+  S  TF+   S C  +  +  G++ HG
Sbjct: 104 SLNTIITTMVKNGYERQALDTY-DLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHG 162

Query: 360 QVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQ 419
            V+K G+++  +V NALL MY KCG   +A  VFEGI E + V++ TM+ G ++    K+
Sbjct: 163 LVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKE 222

Query: 420 ALMVFESMKTIGVKPDEITMVGVLSACSHA---GLIDRGTEYFYSMNKDYSVTPSSKH-- 474
            L +F  M   G+  D +++  +L  C+     G+ D       +       T + KH  
Sbjct: 223 GLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGF 282

Query: 475 ----YTC--MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAE 528
               + C  ++D+  + G ++ A+++  N+  +    SW  ++     +GN    EKA E
Sbjct: 283 ERDLHLCNSLLDMYAKTGDMDSAENVFENLD-KHSVVSWNIMISG---YGNRCDSEKALE 338

Query: 529 MVFKME 534
              +M+
Sbjct: 339 CFQRMQ 344



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 164/400 (41%), Gaps = 92/400 (23%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNV 57
           + G  DSA  VF  + + S VS+N MISGY        A + F +M     + D V++  
Sbjct: 298 KTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYIN 357

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM------PH 111
           MLT  V++  +   R++FD M    ++SWNA+LSGY Q+    EA E+F +M      P 
Sbjct: 358 MLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPD 417

Query: 112 KNAISW---------------------------------NGLLAAYVHNGRIEEACRLFD 138
           +  ++                                  + L+  Y   G++E +  +F 
Sbjct: 418 RTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHVFS 477

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM--------------------------- 171
             S+ +++ WN ++ GF    +   A   F +M                           
Sbjct: 478 KLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQ 537

Query: 172 ------------HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQ 219
                       +V +V   ++++  Y + GD+  A+  FD  P +++ TW  M+ GY  
Sbjct: 538 GQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAH 597

Query: 220 NGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVS 270
           NG   EA + +  M     + ++I++ A++     S  +D   E+F +M  +      + 
Sbjct: 598 NGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLD 657

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQR-DCVSWAAIISG 309
            +  +I   G+ G   +   + D MP + D + W  ++S 
Sbjct: 658 HYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSS 697


>Medtr8g031210.1 | PPR containing plant-like protein | HC |
           chr8:11676602-11671237 | 20130731
          Length = 703

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 308/599 (51%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           MI G+L+  R  +  D+F      DL         Y +  ++ DA  +F   P+ DVV W
Sbjct: 128 MIHGFLKKVR--IDNDMFVGSALIDL---------YTKCGQMNDAVEVFMEYPKPDVVLW 176

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +         +  AC      S+++L 
Sbjct: 177 TSIVSGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV-----SVASACAQL---SNFKL- 227

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 228 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 274

Query: 207 VFTWTAMVSGYVQNG----MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ M + Y  NG    +LD      D+  + N ++  +++      + ++   ++ E
Sbjct: 275 IISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 334

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A   F+ MP++D ++WA + SGYA  G   E
Sbjct: 335 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFSGYADNGMVHE 394

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+     H  V+K G+E   F+G +L+ 
Sbjct: 395 SMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAVCFHAFVIKNGFENNQFIGASLIE 454

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL  F  M      KP+ +
Sbjct: 455 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKFFYQMANHSDTKPNNV 514

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A DL+ N
Sbjct: 515 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDLINN 574

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++ +++G Y+LLSN+Y     W  A
Sbjct: 575 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDANHAGYYILLSNIYCGDENWHSA 634

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 635 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFVAGDRIHDESDHIYEILTKLHAKMREVAF 693



 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 229/488 (46%), Gaps = 38/488 (7%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y R   +  A +LF   P K V  WNA+L  Y   G   E   +F QM +  ++S     
Sbjct: 46  YARYASIHHAHKLFQETPHKTVYLWNALLRSYCFEGEWVETLSLFCQMKNVCSVS----- 100

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVS 178
                   IEE       K D   +S        +++ +LG     F K  VR   D+  
Sbjct: 101 --------IEE-------KPDNYSVSIALKSCAGLRKLLLGKMIHGFLK-KVRIDNDMFV 144

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
            + +I  Y + G M+ A  +F + P  DV  WT++VSGY Q+G  + A  FF +M    +
Sbjct: 145 GSALIDLYTKCGQMNDAVEVFMEYPKPDVVLWTSIVSGYEQSGSPELALAFFSRMVVSEK 204

Query: 239 ISYN-----AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQAR 289
           +S +     ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A 
Sbjct: 205 VSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNAS 264

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
            LF  M  +D +SW+ + + YA  G   + L++FIE+       N  T    L  CA I+
Sbjct: 265 NLFREMSDKDIISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACIS 324

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
            LE G +IH   V  G+E    V  AL+ MY KC S  +A D F  + +KDV++W  + +
Sbjct: 325 NLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFS 384

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           GYA +G   +++ VF +M + G +PD I +V +L+  S  G++ +    F++        
Sbjct: 385 GYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAV-CFHAFVIKNGFE 443

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
            +      +I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A + 
Sbjct: 444 NNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKF 499

Query: 530 VFKMEPHN 537
            ++M  H+
Sbjct: 500 FYQMANHS 507



 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 10/187 (5%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L TC    ++    Q+H Q +K G     F+   L  +Y +  SI  A+ +F+    K V
Sbjct: 11  LETCCSKLSIS---QLHSQCLKVGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHKTV 67

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMK-----TIGVKPDEITMVGVLSACSHAGLIDRGT 456
             WN ++  Y   G   + L +F  MK     +I  KPD  ++   L +C+    +  G 
Sbjct: 68  YLWNALLRSYCFEGEWVETLSLFCQMKNVCSVSIEEKPDNYSVSIALKSCAGLRKLLLG- 126

Query: 457 EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRI 516
           +  +   K   +       + +IDL  + G++ +A ++    P +P    W +++     
Sbjct: 127 KMIHGFLKKVRIDNDMFVGSALIDLYTKCGQMNDAVEVFMEYP-KPDVVLWTSIVSGYEQ 185

Query: 517 HGNTELG 523
            G+ EL 
Sbjct: 186 SGSPELA 192


>Medtr8g031210.3 | PPR containing plant-like protein | HC |
           chr8:11673838-11671237 | 20130731
          Length = 703

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 308/599 (51%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           MI G+L+  R  +  D+F      DL         Y +  ++ DA  +F   P+ DVV W
Sbjct: 128 MIHGFLKKVR--IDNDMFVGSALIDL---------YTKCGQMNDAVEVFMEYPKPDVVLW 176

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +         +  AC      S+++L 
Sbjct: 177 TSIVSGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV-----SVASACAQL---SNFKL- 227

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 228 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 274

Query: 207 VFTWTAMVSGYVQNG----MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ M + Y  NG    +LD      D+  + N ++  +++      + ++   ++ E
Sbjct: 275 IISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 334

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A   F+ MP++D ++WA + SGYA  G   E
Sbjct: 335 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFSGYADNGMVHE 394

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+     H  V+K G+E   F+G +L+ 
Sbjct: 395 SMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAVCFHAFVIKNGFENNQFIGASLIE 454

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL  F  M      KP+ +
Sbjct: 455 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKFFYQMANHSDTKPNNV 514

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A DL+ N
Sbjct: 515 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDLINN 574

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++ +++G Y+LLSN+Y     W  A
Sbjct: 575 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDANHAGYYILLSNIYCGDENWHSA 634

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 635 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFVAGDRIHDESDHIYEILTKLHAKMREVAF 693



 Score =  188 bits (477), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 229/488 (46%), Gaps = 38/488 (7%)

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
           Y R   +  A +LF   P K V  WNA+L  Y   G   E   +F QM +  ++S     
Sbjct: 46  YARYASIHHAHKLFQETPHKTVYLWNALLRSYCFEGEWVETLSLFCQMKNVCSVS----- 100

Query: 122 AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR---DVVS 178
                   IEE       K D   +S        +++ +LG     F K  VR   D+  
Sbjct: 101 --------IEE-------KPDNYSVSIALKSCAGLRKLLLGKMIHGFLK-KVRIDNDMFV 144

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
            + +I  Y + G M+ A  +F + P  DV  WT++VSGY Q+G  + A  FF +M    +
Sbjct: 145 GSALIDLYTKCGQMNDAVEVFMEYPKPDVVLWTSIVSGYEQSGSPELALAFFSRMVVSEK 204

Query: 239 ISYN-----AMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQAR 289
           +S +     ++ +   Q +   + R +   +  + + +     N+++  YG+ G I  A 
Sbjct: 205 VSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNAS 264

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
            LF  M  +D +SW+ + + YA  G   + L++FIE+       N  T    L  CA I+
Sbjct: 265 NLFREMSDKDIISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACIS 324

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
            LE G +IH   V  G+E    V  AL+ MY KC S  +A D F  + +KDV++W  + +
Sbjct: 325 NLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFS 384

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           GYA +G   +++ VF +M + G +PD I +V +L+  S  G++ +    F++        
Sbjct: 385 GYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAV-CFHAFVIKNGFE 443

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
            +      +I++  +   +E+A  + + M ++    +W +++ A   HG    GE+A + 
Sbjct: 444 NNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVTWSSIIAAYGFHGQ---GEEALKF 499

Query: 530 VFKMEPHN 537
            ++M  H+
Sbjct: 500 FYQMANHS 507



 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 10/187 (5%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L TC    ++    Q+H Q +K G     F+   L  +Y +  SI  A+ +F+    K V
Sbjct: 11  LETCCSKLSIS---QLHSQCLKVGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHKTV 67

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMK-----TIGVKPDEITMVGVLSACSHAGLIDRGT 456
             WN ++  Y   G   + L +F  MK     +I  KPD  ++   L +C+    +  G 
Sbjct: 68  YLWNALLRSYCFEGEWVETLSLFCQMKNVCSVSIEEKPDNYSVSIALKSCAGLRKLLLG- 126

Query: 457 EYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRI 516
           +  +   K   +       + +IDL  + G++ +A ++    P +P    W +++     
Sbjct: 127 KMIHGFLKKVRIDNDMFVGSALIDLYTKCGQMNDAVEVFMEYP-KPDVVLWTSIVSGYEQ 185

Query: 517 HGNTELG 523
            G+ EL 
Sbjct: 186 SGSPELA 192


>Medtr6g066360.1 | PPR containing plant-like protein | HC |
           chr6:24701161-24699312 | 20130731
          Length = 563

 Score =  317 bits (812), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/527 (33%), Positives = 291/527 (55%), Gaps = 32/527 (6%)

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS 139
           Q D     +++  Y++    + AR+VF +MP ++ +SWN L++AY H   +E+A  L   
Sbjct: 42  QADTFVQTSLVDMYSKCSVIESARKVFDEMPERSVVSWNSLISAYCHESMMEKALSLIKE 101

Query: 140 -------KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR-----------DVVSWNT 181
                   S    +S   ++ G+     L +   L+  M +            +V   N+
Sbjct: 102 MLVLGFKPSSSTFVS---ILSGYSSN--LNSFEFLWQGMSMHCFVIKLGLVCFEVSLDNS 156

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE--- 238
           ++  YAQ G M +A+ +FD    + + +WT ++ GYV+ G   EA   F++M  +N    
Sbjct: 157 LMGMYAQFGQMDEARKVFDFMDEKTIVSWTTIMGGYVKVGSSVEAVKLFNEMQHQNIGLD 216

Query: 239 -ISYNAMVAGYVQSNKMDMARELFEAMPSRNV----SSWNTMITGYGQNGDIAQARKLFD 293
            I +  +V+G +Q  +  +A  +   +         S  N ++T Y + G++  AR +FD
Sbjct: 217 FIVFVNLVSGCIQLREQLLASSVHSLVLKCGCHEEDSIKNLLLTMYARCGNLTSARIIFD 276

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
           ++ ++  +SW ++I+GYA +   +EAL++F  +       NR+T +  LS CAD+ +L +
Sbjct: 277 LIVRKSVLSWTSMIAGYAHSRRPKEALDLFRRMVMTEIKPNRATLATVLSACADLGSLCI 336

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G++I     + G+ET   V  +L+ MY KCG+I +A +VFE +E KD+  W++MI  Y  
Sbjct: 337 GEEIEQYAFENGFETDLQVQTSLVHMYSKCGNINKAREVFERVENKDLTLWSSMINSYGI 396

Query: 414 HGFGKQALMVFESMKTIG-VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
           HG G +A+ +FE M T   +KPD I    +L ACSH+GLI+ G +YF SM  D+ +TP+ 
Sbjct: 397 HGMGNEAISLFEKMTTAERIKPDAIVYTSLLFACSHSGLIEDGLKYFKSMQTDFGITPTK 456

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
           +HYTC++DLL R G+L+ A D +  MP +  A +   LL A RIHGN ELGE  A  +  
Sbjct: 457 EHYTCLVDLLARVGQLDLALDTIEAMPTDVQAEALSPLLSACRIHGNIELGELVAAKLLD 516

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           + P +S  YV ++NLY + G+W +A  MR+ +   G+ K  G+S V+
Sbjct: 517 VSPKSSSSYVGVANLYNSVGKWKEANTMRNMIDGKGMVKECGWSQVQ 563



 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 230/534 (43%), Gaps = 90/534 (16%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVSWNVMLT 60
           +SA +VF+ MP RS VS+N++IS Y   +    A  L  +M      P     ++  +L+
Sbjct: 62  ESARKVFDEMPERSVVSWNSLISAYCHESMMEKALSLIKEMLVLGFKPSSS--TFVSILS 119

Query: 61  GYVRNRRLGDARRLFDSMPQK-----------DVVSWNAMLSGYAQNGYADEAREVFYQM 109
           GY  N  L     L+  M              +V   N+++  YAQ G  DEAR+VF  M
Sbjct: 120 GYSSN--LNSFEFLWQGMSMHCFVIKLGLVCFEVSLDNSLMGMYAQFGQMDEARKVFDFM 177

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSD----WELISWNCLMGGFVKRK---MLG 162
             K  +SW  ++  YV  G   EA +LF+         + I +  L+ G ++ +   +  
Sbjct: 178 DEKTIVSWTTIMGGYVKVGSSVEAVKLFNEMQHQNIGLDFIVFVNLVSGCIQLREQLLAS 237

Query: 163 AARKLFDK--MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           +   L  K   H  D +  N +++ YA+ G+++ A+ +FD    + V +WT+M++GY  +
Sbjct: 238 SVHSLVLKCGCHEEDSIK-NLLLTMYARCGNLTSARIIFDLIVRKSVLSWTSMIAGYAHS 296

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMA---------RELFEAMPSRNVSS 271
               EA   F +M    EI  N      V S   D+          +  FE     ++  
Sbjct: 297 RRPKEALDLFRRMVM-TEIKPNRATLATVLSACADLGSLCIGEEIEQYAFENGFETDLQV 355

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE------ 325
             +++  Y + G+I +AR++F+ +  +D   W+++I+ Y   G   EA+++F +      
Sbjct: 356 QTSLVHMYSKCGNINKAREVFERVENKDLTLWSSMINSYGIHGMGNEAISLFEKMTTAER 415

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
           IK D        F+C+                H  +++ G +            YFK   
Sbjct: 416 IKPDAIVYTSLLFACS----------------HSGLIEDGLK------------YFK--- 444

Query: 386 IGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
                  F     K+   +  ++   AR G    AL   E+M T  V+ + ++   +LSA
Sbjct: 445 --SMQTDFGITPTKE--HYTCLVDLLARVGQLDLALDTIEAMPT-DVQAEALS--PLLSA 497

Query: 446 CSHAGLIDRGTEYFYSMNKDYSVTP-SSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           C   G I+ G        K   V+P SS  Y  + +L    G+ +EA + MRNM
Sbjct: 498 CRIHGNIELGE---LVAAKLLDVSPKSSSSYVGVANLYNSVGKWKEA-NTMRNM 547



 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 171/381 (44%), Gaps = 63/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----------DLV 53
           G  D A +VF+ M  ++ VS+  ++ GY++      A  LF++M  +          +LV
Sbjct: 165 GQMDEARKVFDFMDEKTIVSWTTIMGGYVKVGSSVEAVKLFNEMQHQNIGLDFIVFVNLV 224

Query: 54  SW-----------------------------NVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           S                              N++LT Y R   L  AR +FD + +K V+
Sbjct: 225 SGCIQLREQLLASSVHSLVLKCGCHEEDSIKNLLLTMYARCGNLTSARIIFDLIVRKSVL 284

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRI----EEACRL 136
           SW +M++GYA +    EA ++F +M       N  +   +L+A    G +    E     
Sbjct: 285 SWTSMIAGYAHSRRPKEALDLFRRMVMTEIKPNRATLATVLSACADLGSLCIGEEIEQYA 344

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
           F++  + +L     L+  + K   +  AR++F+++  +D+  W++MI+ Y   G  ++A 
Sbjct: 345 FENGFETDLQVQTSLVHMYSKCGNINKAREVFERVENKDLTLWSSMINSYGIHGMGNEAI 404

Query: 197 NLFDQSP-----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVA 246
           +LF++         D   +T+++     +G++++   +F  M     I+     Y  +V 
Sbjct: 405 SLFEKMTTAERIKPDAIVYTSLLFACSHSGLIEDGLKYFKSMQTDFGITPTKEHYTCLVD 464

Query: 247 GYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQ----ARKLFDMMPQRDCV 301
              +  ++D+A +  EAMP+     + + +++    +G+I      A KL D+ P+    
Sbjct: 465 LLARVGQLDLALDTIEAMPTDVQAEALSPLLSACRIHGNIELGELVAAKLLDVSPKSSS- 523

Query: 302 SWAAIISGYAQTGHYEEALNM 322
           S+  + + Y   G ++EA  M
Sbjct: 524 SYVGVANLYNSVGKWKEANTM 544



 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 35/234 (14%)

Query: 334 NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           N  T+     +CA++ ++  G  +HG V + G++   FV  +L+ MY KC  I  A  VF
Sbjct: 9   NTFTYPLLFKSCANLLSIPHGTMLHGHVFRLGFQADTFVQTSLVDMYSKCSVIESARKVF 68

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS------ 447
           + + E+ VVSWN++I+ Y      ++AL + + M  +G KP   T V +LS  S      
Sbjct: 69  DEMPERSVVSWNSLISAYCHESMMEKALSLIKEMLVLGFKPSSSTFVSILSGYSSNLNSF 128

Query: 448 ---------HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
                    H  +I  G   F  ++ D S          ++ +  + G+++EA+ +   M
Sbjct: 129 EFLWQGMSMHCFVIKLGLVCF-EVSLDNS----------LMGMYAQFGQMDEARKVFDFM 177

Query: 499 PFEPPAASWGALLGASRIHGNTELGE--KAAEMVFKMEPHNSGM-YVLLSNLYA 549
             E    SW  ++G     G  ++G   +A ++  +M+  N G+ +++  NL +
Sbjct: 178 D-EKTIVSWTTIMG-----GYVKVGSSVEAVKLFNEMQHQNIGLDFIVFVNLVS 225



 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 59/294 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQR----- 50
           R G+  SA  +F+ + R+S +S+ +MI+GY  + R   A DLF +M      P R     
Sbjct: 264 RCGNLTSARIIFDLIVRKSVLSWTSMIAGYAHSRRPKEALDLFRRMVMTEIKPNRATLAT 323

Query: 51  ----------------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKD 82
                                       DL     ++  Y +   +  AR +F+ +  KD
Sbjct: 324 VLSACADLGSLCIGEEIEQYAFENGFETDLQVQTSLVHMYSKCGNINKAREVFERVENKD 383

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMP-----HKNAISWNGLLAAYVHNGRIEEACRLF 137
           +  W++M++ Y  +G  +EA  +F +M        +AI +  LL A  H+G IE+  + F
Sbjct: 384 LTLWSSMINSYGIHGMGNEAISLFEKMTTAERIKPDAIVYTSLLFACSHSGLIEDGLKYF 443

Query: 138 DS-KSDWELIS----WNCLMGGFVKRKMLGAARKLFDKMHVRDV-------VSWNTMISG 185
            S ++D+ +      + CL+    +   L  A    + M   DV       +     I G
Sbjct: 444 KSMQTDFGITPTKEHYTCLVDLLARVGQLDLALDTIEAMPT-DVQAEALSPLLSACRIHG 502

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
             + G++  AK L D SP     ++  + + Y   G   EA T  + +  K  +
Sbjct: 503 NIELGELVAAK-LLDVSPKSSS-SYVGVANLYNSVGKWKEANTMRNMIDGKGMV 554


>Medtr8g031210.2 | PPR containing plant-like protein | HC |
           chr8:11676602-11671244 | 20130731
          Length = 611

 Score =  316 bits (810), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 188/599 (31%), Positives = 307/599 (51%), Gaps = 42/599 (7%)

Query: 27  MISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSW 86
           MI G+L+  R              D+   + ++  Y +  ++ DA  +F   P+ DVV W
Sbjct: 36  MIHGFLKKVRI-----------DNDMFVGSALIDLYTKCGQMNDAVEVFMEYPKPDVVLW 84

Query: 87  NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI 146
            +++SGY Q+G  + A   F +M     +S + +         +  AC      S+++L 
Sbjct: 85  TSIVSGYEQSGSPELALAFFSRMVVSEKVSPDPVTLV-----SVASACAQL---SNFKL- 135

Query: 147 SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
                + GFVKRK  G   KL            N+++  Y + G +  A NLF +   +D
Sbjct: 136 --GRSVHGFVKRK--GLDNKL---------CLANSLLHLYGKTGSIKNASNLFREMSDKD 182

Query: 207 VFTWTAMVSGYVQNG----MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
           + +W+ M + Y  NG    +LD      D+  + N ++  +++      + ++   ++ E
Sbjct: 183 IISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE 242

Query: 263 AMPSRNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE 318
              +       T+ T     Y +     +A   F+ MP++D ++WA + SGYA  G   E
Sbjct: 243 LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFSGYADNGMVHE 302

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLG 378
           ++ +F  +   G   +       L+T +++  L+     H  V+K G+E   F+G +L+ 
Sbjct: 303 SMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAVCFHAFVIKNGFENNQFIGASLIE 362

Query: 379 MYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEI 437
           +Y KC SI +AN VF+G+  KDVV+W+++IA Y  HG G++AL  F  M      KP+ +
Sbjct: 363 VYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKFFYQMANHSDTKPNNV 422

Query: 438 TMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRN 497
           T + +LSACSH+GLI  G   F  M   Y + P+S+HY  M+DLLGR G L+ A DL+ N
Sbjct: 423 TFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDLINN 482

Query: 498 MPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
           MP +     WGALLGA RIH N ++GE AA+ +F ++ +++G Y+LLSN+Y     W  A
Sbjct: 483 MPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDANHAGYYILLSNIYCGDENWHSA 542

Query: 558 GNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
             +R  +++  + K+ G S VE++N++  F  GD  H E D IY  L +L  KMR   +
Sbjct: 543 TKLRRLVKEKRLNKIVGQSVVELKNEVRSFVAGDRIHDESDHIYEILTKLHAKMREVAF 601



 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 165/381 (43%), Gaps = 61/381 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS--------- 54
           G  + A+ VF   P+   V + +++SGY ++    LA   F +M   + VS         
Sbjct: 64  GQMNDAVEVFMEYPKPDVVLWTSIVSGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 123

Query: 55  -------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQKDV 83
                                           N +L  Y +   + +A  LF  M  KD+
Sbjct: 124 ASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDI 183

Query: 84  VSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS 139
           +SW+ M + YA NG   +  ++F +M  K    N ++   +L A      +EE  ++ + 
Sbjct: 184 ISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHEL 243

Query: 140 KSDW----ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
             ++    E      LM  ++K      A   F++M  +DV++W  + SGYA +G + ++
Sbjct: 244 AVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFSGYADNGMVHES 303

Query: 196 ----KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF----FDQMPQKNEISYNAMVAG 247
               +N+       D      +++   + G+L +A  F         + N+    +++  
Sbjct: 304 MWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAVCFHAFVIKNGFENNQFIGASLIEV 363

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-----QRDCVS 302
           Y + + ++ A ++F+ M  ++V +W+++I  YG +G   +A K F  M      + + V+
Sbjct: 364 YAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKFFYQMANHSDTKPNNVT 423

Query: 303 WAAIISGYAQTGHYEEALNMF 323
           + +I+S  + +G  +E +NMF
Sbjct: 424 FISILSACSHSGLIKEGINMF 444



 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 8/190 (4%)

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
           IE K D  S+     S AL +CA +  L LGK IHG + K   +   FVG+AL+ +Y KC
Sbjct: 9   IEEKPDNYSV-----SIALKSCAGLRKLLLGKMIHGFLKKVRIDNDMFVGSALIDLYTKC 63

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM-KTIGVKPDEITMVGV 442
           G + +A +VF    + DVV W ++++GY + G  + AL  F  M  +  V PD +T+V V
Sbjct: 64  GQMNDAVEVFMEYPKPDVVLWTSIVSGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSV 123

Query: 443 LSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEP 502
            SAC+       G    +   K   +         ++ L G+ G ++ A +L R M  + 
Sbjct: 124 ASACAQLSNFKLGRS-VHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMS-DK 181

Query: 503 PAASWGALLG 512
              SW  +  
Sbjct: 182 DIISWSTMFA 191



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 157/379 (41%), Gaps = 57/379 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM-----P 79
           +A+I  Y +  + + A ++F + P+ D+V W  +++GY ++     A   F  M      
Sbjct: 54  SALIDLYTKCGQMNDAVEVFMEYPKPDVVLWTSIVSGYEQSGSPELALAFFSRMVVSEKV 113

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK---NAISW-NGLLAAYVHNGRIEEACR 135
             D V+  ++ S  AQ       R V   +  K   N +   N LL  Y   G I+ A  
Sbjct: 114 SPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASN 173

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV-VSWNTMIS---------- 184
           LF   SD ++ISW+ +   +           LF +M  + +  +W T++S          
Sbjct: 174 LFREMSDKDIISWSTMFACYADNGAETDVLDLFIEMLDKRIKPNWVTVVSVLRACACISN 233

Query: 185 --------------GYAQDGDMS--------------QAKNLFDQSPHQDVFTWTAMVSG 216
                         G+  +  +S              +A + F++ P +DV  W  + SG
Sbjct: 234 LEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDFFNRMPKKDVIAWAVLFSG 293

Query: 217 YVQNGMLDEAR-TFFDQMPQKNEISYNAMVAGYVQSNKMDMARE--LFEAMPSRNVSSWN 273
           Y  NGM+ E+   F + +         A+V      +++ + ++   F A   +N    N
Sbjct: 294 YADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTVSELGILQQAVCFHAFVIKNGFENN 353

Query: 274 -----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
                ++I  Y +   I  A K+F  M  +D V+W++II+ Y   G  EEAL  F ++  
Sbjct: 354 QFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKFFYQMAN 413

Query: 329 DGES-LNRSTFSCALSTCA 346
             ++  N  TF   LS C+
Sbjct: 414 HSDTKPNNVTFISILSACS 432


>Medtr1g112500.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:50925869-50923259 | 20130731
          Length = 710

 Score =  315 bits (807), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 204/620 (32%), Positives = 312/620 (50%), Gaps = 60/620 (9%)

Query: 20  SSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLF---- 75
           SS   + + + Y +    S A  LFDK+P+R+L SWN M+  YV+  R  DA  +F    
Sbjct: 46  SSQLSSKLATTYAQCHHASYASQLFDKLPKRNLFSWNTMMRMYVQMGRPHDALNMFVEML 105

Query: 76  ---DSMPQK-------------------------------DVVSW--NAMLSGYAQNGYA 99
               +MP                                 D+ S+  N++L+ Y   G  
Sbjct: 106 HSGRAMPDHFTYPIVIKACSELLFVDMGVGVHGQTAKCGFDLNSFVQNSLLAMYMNVGEK 165

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLM------- 152
           + AR VF  M  +  +SWN L+     N   E+A R++    D E +  +C         
Sbjct: 166 EAARLVFELMQERTVVSWNTLINGLFRNNCAEDALRVYSRMVD-EGVGVDCATVVSVLQA 224

Query: 153 GGFVKRKMLG-AARKL-FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW 210
            G +K   LG   R L  +K +  +VV  N ++  Y + G+M +A+ L +    +DV TW
Sbjct: 225 CGVLKNVELGREVRALTLEKGYWGNVVVRNALLDMYVKCGEMEEARLLLNGMEEKDVVTW 284

Query: 211 TAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
           T +++GYV NG    A      M     + N +S  ++++       +   + L      
Sbjct: 285 TTLINGYVVNGDARSALMLCRSMQLEGVKPNLVSVASLLSACGDLVSLKHGKCLHAWAIR 344

Query: 267 RNVSSWNTMITG----YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           +N+ S   M T     Y +  +   + K+F    ++    W A++SG+        A+ +
Sbjct: 345 QNIESEVVMETALIDMYAKCNEGNLSYKVFMKTSKKRTAPWNAVLSGFVHNRLARNAVQL 404

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F E+  +    +  TF+  L   A +A L+    +H  +VK G+     V + L+ +Y K
Sbjct: 405 FKEMLLENVQPDSPTFNSLLPAYAILADLKQAMNMHCYLVKLGFLCKLEVASMLVDIYSK 464

Query: 383 CGSIGEANDVFEGI--EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
           CG++G A+ +F+ I  ++KD++ W  +I  Y +HG+G+ A+ +F  M   G KP+E+T  
Sbjct: 465 CGTLGYAHQIFDMIPLKDKDIIIWTAIIDAYGKHGYGEMAVSLFNQMVQSGEKPNEVTFT 524

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
            VL ACSHAGL+D+G   F  M K Y V PS  HYTC++DLLGRAGRL +A +L+R MP 
Sbjct: 525 SVLHACSHAGLVDQGLSLFNLMLKKYQVIPSVDHYTCIVDLLGRAGRLNDAYNLIRTMPI 584

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
               A WGALLGA  IH N ELGE AA   F++EP N+G YVLL+ LYAA GRW DA  +
Sbjct: 585 THNHAVWGALLGACVIHENVELGEIAARWTFELEPENTGNYVLLAKLYAAVGRWRDAERV 644

Query: 561 RSRMRDVGVQKVTGYSWVEV 580
           R+ + +VG++K    S VE+
Sbjct: 645 RNMVNEVGLRKTPANSLVEL 664



 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 147/287 (51%), Gaps = 13/287 (4%)

Query: 241 YNAMVAGYVQSNKMDMAREL------FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDM 294
           + +++  Y  SN +   ++L      +    S  +SS   + T Y Q    + A +LFD 
Sbjct: 15  FESLLRKYSASNSLSETKKLHALIITYGLFSSSQLSS--KLATTYAQCHHASYASQLFDK 72

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL-NRSTFSCALSTCADIAALEL 353
           +P+R+  SW  ++  Y Q G   +ALNMF+E+   G ++ +  T+   +  C+++  +++
Sbjct: 73  LPKRNLFSWNTMMRMYVQMGRPHDALNMFVEMLHSGRAMPDHFTYPIVIKACSELLFVDM 132

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G  +HGQ  K G++   FV N+LL MY   G    A  VFE ++E+ VVSWNT+I G  R
Sbjct: 133 GVGVHGQTAKCGFDLNSFVQNSLLAMYMNVGEKEAARLVFELMQERTVVSWNTLINGLFR 192

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY-FYSMNKDYSVTPSS 472
           +   + AL V+  M   GV  D  T+V VL AC     ++ G E    ++ K Y      
Sbjct: 193 NNCAEDALRVYSRMVDEGVGVDCATVVSVLQACGVLKNVELGREVRALTLEKGYWGNVVV 252

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGN 519
           ++   ++D+  + G +EEA+ L+  M  E    +W  L+    ++G+
Sbjct: 253 RN--ALLDMYVKCGEMEEARLLLNGME-EKDVVTWTTLINGYVVNGD 296



 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 175/389 (44%), Gaps = 26/389 (6%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL------VS 54
           M  G  ++A  VF  M  R+ VS+N +I+G  RN     A  ++ +M    +      V 
Sbjct: 160 MNVGEKEAARLVFELMQERTVVSWNTLINGLFRNNCAEDALRVYSRMVDEGVGVDCATVV 219

Query: 55  WNVMLTGYVRNRRLG-DARRL-FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
             +   G ++N  LG + R L  +     +VV  NA+L  Y + G  +EAR +   M  K
Sbjct: 220 SVLQACGVLKNVELGREVRALTLEKGYWGNVVVRNALLDMYVKCGEMEEARLLLNGMEEK 279

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLM---GGFVKRKMLGAAR 165
           + ++W  L+  YV NG    A  L  S         L+S   L+   G  V  K      
Sbjct: 280 DVVTWTTLINGYVVNGDARSALMLCRSMQLEGVKPNLVSVASLLSACGDLVSLKHGKCLH 339

Query: 166 KLFDKMHVR-DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
               + ++  +VV    +I  YA+  + + +  +F ++  +    W A++SG+V N +  
Sbjct: 340 AWAIRQNIESEVVMETALIDMYAKCNEGNLSYKVFMKTSKKRTAPWNAVLSGFVHNRLAR 399

Query: 225 EARTFFDQM----PQKNEISYNAMVAGYV----QSNKMDMARELFEAMPSRNVSSWNTMI 276
            A   F +M     Q +  ++N+++  Y         M+M   L +      +   + ++
Sbjct: 400 NAVQLFKEMLLENVQPDSPTFNSLLPAYAILADLKQAMNMHCYLVKLGFLCKLEVASMLV 459

Query: 277 TGYGQNGDIAQARKLFDMMP--QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
             Y + G +  A ++FDM+P   +D + W AII  Y + G+ E A+++F ++ + GE  N
Sbjct: 460 DIYSKCGTLGYAHQIFDMIPLKDKDIIIWTAIIDAYGKHGYGEMAVSLFNQMVQSGEKPN 519

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVK 363
             TF+  L  C+    ++ G  +   ++K
Sbjct: 520 EVTFTSVLHACSHAGLVDQGLSLFNLMLK 548


>Medtr4g118700.1 | PPR containing plant-like protein | HC |
           chr4:49164700-49162766 | 20130731
          Length = 625

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 302/604 (50%), Gaps = 50/604 (8%)

Query: 59  LTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM-----PHKN 113
           +    R+ R+  AR+LFD MP++D V+WNAML+ Y++ G   +  ++F  M        +
Sbjct: 12  IVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPD 71

Query: 114 AISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
             S++  + +      I    +L      S     L   N L+  + K      ARK+FD
Sbjct: 72  NFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFD 131

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
           +M+  + V+W +++  YA       A  +F   P +    W  +++ + + G ++     
Sbjct: 132 EMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHL 191

Query: 230 FDQMP----QKNEISYNAMVAGYVQS-------------------NKMDM---------- 256
           F +M     Q ++ +++A+++   +S                     M++          
Sbjct: 192 FKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAK 251

Query: 257 ------ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGY 310
                 A ++F +  + N  SWN +I  + + GD  +A   F   P+++ VSW ++I GY
Sbjct: 252 LECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGY 311

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
            + G+ + AL++F+++KR+   L+       L  CA +A L  GK +H  ++  G +   
Sbjct: 312 TRNGNGDLALSLFLDMKRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYL 371

Query: 371 FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
           FVGN+L+ MY KCG I  +     GI +KD+VSWN+M+  +  +G G +A+ +F  M   
Sbjct: 372 FVGNSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVAS 431

Query: 431 GVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEE 490
           GV+PDE+T  G+L  CSH GLID G  +F SM+ +Y +     H  CM+D+LGR G + E
Sbjct: 432 GVRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYVAE 491

Query: 491 AQDLMR--NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLY 548
           AQ L R  +        S   LLGA   HG+   G    E V  +EP     YVLLSN+Y
Sbjct: 492 AQSLARKYSKTSRDKTNSCEVLLGACHAHGDLGTGSSVGEYVKNLEPKKEVGYVLLSNMY 551

Query: 549 AASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELD 608
            ASG+W +A  +R  M D GV+KV G SW+E++N +  F  G+  +P    I   L  L+
Sbjct: 552 CASGKWKEAEMVRKEMMDQGVKKVPGCSWIEIRNVVTAFVSGNNLYPCMADISKILYFLE 611

Query: 609 LKMR 612
           L+MR
Sbjct: 612 LEMR 615



 Score =  143 bits (360), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 183/441 (41%), Gaps = 89/441 (20%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP------------- 48
           R+G    A ++F+ MP R +V++NAM++ Y R   +    DLFD M              
Sbjct: 17  RSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSKPDNFSYS 76

Query: 49  ---------------------------QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
                                      Q  L   N ++  Y +     DAR++FD M   
Sbjct: 77  AAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKVFDEMNYS 136

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS 141
           + V+W ++L  YA     D A E+F  MP K  I+WN ++AA+   G +E    LF    
Sbjct: 137 NEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACLHLFKEMC 196

Query: 142 D--WELISWN-----------------CLMGGFV--------------------KRKMLG 162
           +  ++   W                  C+M  FV                    K +  G
Sbjct: 197 ENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFYAKLECHG 256

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
            A K+F+     + VSWN +I  + + GD  +A   F Q+P +++ +WT+M+ GY +NG 
Sbjct: 257 DAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGN 316

Query: 223 LDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSW---------N 273
            D A + F  M ++N    + +VAG V      +A  +   M    +            N
Sbjct: 317 GDLALSLFLDM-KRNSFQLDDLVAGAVLHACASLAILVHGKMVHSCIIHLGLDKYLFVGN 375

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL 333
           ++I  Y + GDI  ++     +  +D VSW +++  +   G   EA+ MF E+   G   
Sbjct: 376 SLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASGVRP 435

Query: 334 NRSTFSCALSTCADIAALELG 354
           +  TF+  L TC+ +  ++ G
Sbjct: 436 DEVTFTGLLMTCSHLGLIDEG 456



 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 43/184 (23%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-----DLVS- 54
           M+ G    AL  F   P ++ VS+ +MI GY RN    LA  LF  M +      DLV+ 
Sbjct: 281 MKVGDTQKALLAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLFLDMKRNSFQLDDLVAG 340

Query: 55  ---------------------------------WNVMLTGYVRNRRLGDARRLFDSMPQK 81
                                             N ++  Y +   +  ++     +  K
Sbjct: 341 AVLHACASLAILVHGKMVHSCIIHLGLDKYLFVGNSLINMYAKCGDIEGSKLALRGINDK 400

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLF 137
           D+VSWN+ML  +  NG  +EA  +F +M       + +++ GLL    H G I+E    F
Sbjct: 401 DLVSWNSMLFAFGLNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCSHLGLIDEGFAFF 460

Query: 138 DSKS 141
            S S
Sbjct: 461 QSMS 464


>Medtr8g027150.1 | PPR containing plant-like protein | HC |
           chr8:9538952-9542067 | 20130731
          Length = 506

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/365 (40%), Positives = 229/365 (62%), Gaps = 2/365 (0%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
            A++  Y +   +  AR +F+ M  + +++WN M+ G  + GD+ +A +LF +MP R+ V
Sbjct: 118 TALLDMYAKLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVV 177

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGE-SLNRSTFSCALSTCADIAALELGKQIHGQ 360
           SW  ++SGY Q   YE+AL +F+ ++R+ + S N  T +  L  CA++ ALE+G+++   
Sbjct: 178 SWTTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVY 237

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE-KDVVSWNTMIAGYARHGFGKQ 419
             K G+    FV NA+L MY KCG I  A  VF+ I   +++ SWN+MI G A HG   +
Sbjct: 238 ARKNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHK 297

Query: 420 ALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMI 479
           A+ +++ M   G  PD++T VG+L AC+H G++++G   F SM +D+++ P  +HY CM+
Sbjct: 298 AIQLYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMV 357

Query: 480 DLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSG 539
           DLLGRAGRL EA ++++ MP +P +  WG LLGA   HGN EL E AAE +F +EP N G
Sbjct: 358 DLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHGNVELAEVAAESLFVLEPWNPG 417

Query: 540 MYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDR 599
            YV+LSN+YA++G+W     +R  M+   + K  G S++E   ++HKF V D  H E   
Sbjct: 418 NYVILSNIYASAGKWDGVAKLRKVMKGSKITKTAGQSFIEEGGQLHKFIVEDRSHSESSE 477

Query: 600 IYAFL 604
           I+A L
Sbjct: 478 IFALL 482



 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 22/294 (7%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW 210
           L+  + K   L  AR +FD+M V+++ +WN M++G  + GDM +A  LF   P ++V +W
Sbjct: 120 LLDMYAKLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSW 179

Query: 211 TAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM-ARELFEAMPS--- 266
           T MVSGY+QN   ++A   F +M ++ ++S N +    V     ++ A E+ + +     
Sbjct: 180 TTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYAR 239

Query: 267 -----RNVSSWNTMITGYGQNGDIAQARKLFDMMPQ-RDCVSWAAIISGYAQTGHYEEAL 320
                +N+   N ++  Y + G I  A K+FD + + R+  SW ++I G A  G   +A+
Sbjct: 240 KNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHKAI 299

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHG------QVVKTGYETGCFVGN 374
            ++ ++ R+G   +  TF   L  C     +E GK +         ++      GC V  
Sbjct: 300 QLYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMVD- 358

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARHGFGKQALMVFESM 427
            LLG   + G + EA +V + +  K D V W T++   + HG  + A +  ES+
Sbjct: 359 -LLG---RAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHGNVELAEVAAESL 408



 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 142/296 (47%), Gaps = 24/296 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A++  Y +      AR++FD+M  ++L +WN M+ G  R   +  A  LF  MP ++VV
Sbjct: 118 TALLDMYAKLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVV 177

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN-----GLLAAYVHNGRIEEACR--LF 137
           SW  M+SGY QN   ++A  +F +M  +  +S N      +L A  + G +E   R  ++
Sbjct: 178 SWTTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVY 237

Query: 138 DSKSDW--ELISWNCLMGGFVKRKMLGAARKLFDKM-HVRDVVSWNTMISGYAQDGDMSQ 194
             K+ +   L   N ++  + K   +  A K+FD++   R++ SWN+MI G A  G   +
Sbjct: 238 ARKNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHK 297

Query: 195 AKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-----SYNAMV 245
           A  L+DQ   +    D  T+  ++      GM+++ +  F  M +   I      Y  MV
Sbjct: 298 AIQLYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMV 357

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSS-WNTMITGYGQNGDI----AQARKLFDMMP 296
               ++ ++  A E+ + MP +  S  W T++     +G++      A  LF + P
Sbjct: 358 DLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHGNVELAEVAAESLFVLEP 413



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 150/331 (45%), Gaps = 37/331 (11%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           +F T    SS+S   MI      + F           + D+ +   +L  Y +   L  A
Sbjct: 85  LFTTCTSLSSLSLGQMIHTQFMKSGF-----------KHDVFASTALLDMYAKLGCLKFA 133

Query: 72  RRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIE 131
           R +FD M  K++ +WNAM++G  + G  + A E+F+ MP +N +SW  +++ Y+ N + E
Sbjct: 134 RNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMVSGYLQNKQYE 193

Query: 132 EACRLFDSKSDWELISWN--CLMGGFVKRKMLGA----------ARKLFDKMHVRDVVSW 179
           +A  LF      + +S N   L         LGA          ARK       +++   
Sbjct: 194 KALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYARK---NGFFKNLFVC 250

Query: 180 NTMISGYAQDGDMSQAKNLFDQ-SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK-- 236
           N ++  YA+ G +  A  +FD+    +++ +W +M+ G   +G   +A   +DQM ++  
Sbjct: 251 NAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHKAIQLYDQMLREGT 310

Query: 237 --NEISYNAMVAGYVQSNKMDMARELFEAMPS-----RNVSSWNTMITGYGQNGDIAQAR 289
             +++++  ++        ++  + +F++M         +  +  M+   G+ G + +A 
Sbjct: 311 LPDDVTFVGLLLACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAY 370

Query: 290 KLFDMMPQR-DCVSWAAIISGYAQTGHYEEA 319
           ++   MP + D V W  ++   +  G+ E A
Sbjct: 371 EVIKRMPMKPDSVIWGTLLGACSFHGNVELA 401



 Score = 90.1 bits (222), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 54/290 (18%)

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ-------------TGHYEEALNMFI 324
           GY    +I   + L + + Q   +++A ++  ++Q                  +   ++ 
Sbjct: 9   GYTLRNNIDNTKILIEKLLQIPNLNYAQVLLHHSQKPTTFLYNKLIQACSSKHQCFTLYS 68

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           ++   G S N+ TF+   +TC  +++L LG+ IH Q +K+G++   F   ALL MY K G
Sbjct: 69  QMYLHGHSPNQYTFNFLFTTCTSLSSLSLGQMIHTQFMKSGFKHDVFASTALLDMYAKLG 128

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM----------------- 427
            +  A +VF+ +  K++ +WN M+AG  R G  ++AL +F  M                 
Sbjct: 129 CLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMVSGYLQ 188

Query: 428 -----KTIG----------VKPDEITMVGVLSACSHAGLIDRG--TEYFYSMNKDYSVTP 470
                K +G          V P+E+T+  VL AC++ G ++ G   E +   N  +    
Sbjct: 189 NKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYARKNGFF---- 244

Query: 471 SSKHYTC--MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
               + C  ++++  + G+++ A  +   +       SW +++    +HG
Sbjct: 245 -KNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHG 293



 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 117/257 (45%), Gaps = 55/257 (21%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ------------ 49
           R G  + AL +F  MP R+ VS+  M+SGYL+N ++  A  LF +M +            
Sbjct: 157 RFGDMERALELFWLMPSRNVVSWTTMVSGYLQNKQYEKALGLFMRMEREKDVSPNEVTLA 216

Query: 50  ----------------------------RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ- 80
                                       ++L   N +L  Y +  ++  A ++FD + + 
Sbjct: 217 SVLPACANLGALEIGQRVEVYARKNGFFKNLFVCNAVLEMYAKCGKIDVAWKVFDEIGRF 276

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNGLLAAYVHNGRIEEACRL 136
           +++ SWN+M+ G A +G   +A +++ QM  +      +++ GLL A  H G +E+   +
Sbjct: 277 RNLCSWNSMIMGLAVHGQCHKAIQLYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKHV 336

Query: 137 FDSKS-DWELIS----WNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDG 190
           F S + D+ +I     + C++    +   L  A ++  +M ++ D V W T++   +  G
Sbjct: 337 FQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHG 396

Query: 191 DMS----QAKNLFDQSP 203
           ++      A++LF   P
Sbjct: 397 NVELAEVAAESLFVLEP 413


>Medtr7g053240.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr7:18723182-18719939 | 20130731
          Length = 881

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/700 (29%), Positives = 343/700 (49%), Gaps = 124/700 (17%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLV----SWNV 57
           +N +   ALR FN     +  S+NA+IS  ++N    +A +LF +M +  L+    ++  
Sbjct: 183 KNCNFSEALRFFNDASCDNVASWNAIISLAVKNGENQVALNLFSEMCRASLMPNSYTFPS 242

Query: 58  MLTG----------------------------------YVRNRRLGDARRLFDSMPQKDV 83
           +LT                                   Y +   + +A R F  M  ++V
Sbjct: 243 ILTACCALKEMQIGKGVHGLAIKCGATDVFVETAIVDLYAKFGCMSEAYRQFSQMQVQNV 302

Query: 84  VSWNAMLSGYAQNGYADEAREVFY---QMPHK-NAISWNGLLAAYVHNGRIEEACRLFDS 139
           VSW A++SG+ Q      A ++F    Q+ H+ NA +   +L+A      IEEA ++   
Sbjct: 303 VSWTAIISGFVQQDDTTFALKLFKDMRQIGHEINAYTVTSVLSACAKPELIEEAKQIHSL 362

Query: 140 KSDWELISWNCLMGG-----FVKRKMLGAARKLFDKM-HVRDVVSWNTMISGYAQDGDMS 193
                LI  N  +G      + K   +G +   F +M +++D   W +M+S +AQ+ +  
Sbjct: 363 VLKLGLI-LNVKVGAALVNMYAKIGGVGLSELAFSEMKNMKDPGIWASMLSSFAQNRNSG 421

Query: 194 QAKNLFDQSPHQDV------------------------------------FTWTAMVSGY 217
           +A  LF     + V                                        ++ + Y
Sbjct: 422 RALELFTVMLREGVKPDEYCIGSLLSIMSSLSLGSQVHSYILKAGLVTNATVGCSLFTMY 481

Query: 218 VQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV-------- 269
            + G L+E+   F Q   K+ +S+ +M++G+V+    D A  LF+ M  + V        
Sbjct: 482 SKCGCLEESYEVFQQAIVKDNVSWASMISGFVEHGYPDQALRLFKEMLYQEVVPDHITLI 541

Query: 270 --------------------SSW------NTMITG-----YGQNGDIAQARKLFDMMPQR 298
                               S++      NT++ G     Y + G ++ ARK+FD++P +
Sbjct: 542 SILTACADLRLLRTGREIHGSTFRLGLGTNTVVGGALVNMYSKCGSLSLARKVFDILPHK 601

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D  + ++++SGYAQ G  EE+  +F ++ R+ E+++  T +  L   + +   ++G Q+H
Sbjct: 602 DAFACSSLVSGYAQNGLIEESFLLFHDMLRNDETVDAFTITSILGAASLLCQSDIGTQLH 661

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
             + K G +    VG++LL MY KCGSI +    F+ +E+ D++ W ++I  YA+HG G 
Sbjct: 662 AYIEKLGLQADVSVGSSLLTMYSKCGSIEDCRKAFDDVEKPDLIGWTSLILSYAQHGKGA 721

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
            AL  +E MK+ GV+PD +T VG+LSACSH+GL++    Y  SM +DY +TPS +HY C+
Sbjct: 722 DALAAYELMKSEGVEPDAVTFVGILSACSHSGLVEEAFFYLNSMIEDYKITPSHRHYACI 781

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNS 538
           +D+LGR+GRL EA+  + NMP EP A  WG LL A ++HG+ ELG+ AAE V  +EP + 
Sbjct: 782 VDILGRSGRLREAESFINNMPVEPNALIWGTLLAACKVHGDFELGKLAAEKVMGLEPSDV 841

Query: 539 GMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           G YV  SN+ A   +W +   +RS +   G++K   +S V
Sbjct: 842 GAYVSFSNICADGEQWEEVTKIRSSLNKTGMKKEPAWSVV 881



 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 230/482 (47%), Gaps = 45/482 (9%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNVMLTGYVR 64
           A ++F+T+ + S VS+N MISGY+RN+ F  + ++F +M     + D  S+  +L+  V 
Sbjct: 89  AHKLFDTITQPSIVSWNVMISGYVRNSMFLKSLEMFCRMHLFGFEPDEFSYGSVLSACVA 148

Query: 65  NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYAD---------EAREVFYQMPHKNAI 115
            +      ++F  + +   +S     SGY Q    D         EA   F      N  
Sbjct: 149 LQASMFGLQVFSLVVKNGFLS-----SGYVQTQMVDMFCKNCNFSEALRFFNDASCDNVA 203

Query: 116 SWNGLLAAYVHNGRIEEACRLF----------DSKSDWELISWNCLMGGFVKRKMLG-AA 164
           SWN +++  V NG  + A  LF          +S +   +++  C +    K   +G   
Sbjct: 204 SWNAIISLAVKNGENQVALNLFSEMCRASLMPNSYTFPSILTACCAL----KEMQIGKGV 259

Query: 165 RKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
             L  K    DV     ++  YA+ G MS+A   F Q   Q+V +WTA++SG+VQ     
Sbjct: 260 HGLAIKCGATDVFVETAIVDLYAKFGCMSEAYRQFSQMQVQNVVSWTAIISGFVQQDDTT 319

Query: 225 EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMI 276
            A   F  M Q     N  +  ++++   +   ++ A+++   +       NV     ++
Sbjct: 320 FALKLFKDMRQIGHEINAYTVTSVLSACAKPELIEEAKQIHSLVLKLGLILNVKVGAALV 379

Query: 277 TGYGQNGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNR 335
             Y + G +  +   F +M   +D   WA+++S +AQ  +   AL +F  + R+G   + 
Sbjct: 380 NMYAKIGGVGLSELAFSEMKNMKDPGIWASMLSSFAQNRNSGRALELFTVMLREGVKPDE 439

Query: 336 STFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
               C  S  + +++L LG Q+H  ++K G  T   VG +L  MY KCG + E+ +VF+ 
Sbjct: 440 Y---CIGSLLSIMSSLSLGSQVHSYILKAGLVTNATVGCSLFTMYSKCGCLEESYEVFQQ 496

Query: 396 IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
              KD VSW +MI+G+  HG+  QAL +F+ M    V PD IT++ +L+AC+   L+  G
Sbjct: 497 AIVKDNVSWASMISGFVEHGYPDQALRLFKEMLYQEVVPDHITLISILTACADLRLLRTG 556

Query: 456 TE 457
            E
Sbjct: 557 RE 558



 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 16/345 (4%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----Q 235
           +++I  Y +  DM  A  LFD      + +W  M+SGYV+N M  ++   F +M     +
Sbjct: 74  DSLIGLYCKSSDMVLAHKLFDTITQPSIVSWNVMISGYVRNSMFLKSLEMFCRMHLFGFE 133

Query: 236 KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKL 291
            +E SY ++++  V         ++F  +      S       M+  + +N + ++A + 
Sbjct: 134 PDEFSYGSVLSACVALQASMFGLQVFSLVVKNGFLSSGYVQTQMVDMFCKNCNFSEALRF 193

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAAL 351
           F+     +  SW AIIS   + G  + ALN+F E+ R     N  TF   L+ C  +  +
Sbjct: 194 FNDASCDNVASWNAIISLAVKNGENQVALNLFSEMCRASLMPNSYTFPSILTACCALKEM 253

Query: 352 ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGY 411
           ++GK +HG  +K G  T  FV  A++ +Y K G + EA   F  ++ ++VVSW  +I+G+
Sbjct: 254 QIGKGVHGLAIKCG-ATDVFVETAIVDLYAKFGCMSEAYRQFSQMQVQNVVSWTAIISGF 312

Query: 412 ARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPS 471
            +      AL +F+ M+ IG + +  T+  VLSAC+   LI+   +  +S+     +  +
Sbjct: 313 VQQDDTTFALKLFKDMRQIGHEINAYTVTSVLSACAKPELIEEAKQ-IHSLVLKLGLILN 371

Query: 472 SKHYTCMIDL---LGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            K    ++++   +G  G  E A   M+NM  +P    W ++L +
Sbjct: 372 VKVGAALVNMYAKIGGVGLSELAFSEMKNMK-DP--GIWASMLSS 413



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 3/170 (1%)

Query: 355 KQIHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           K +H  ++KT Y ++G F  ++L+G+Y K   +  A+ +F+ I +  +VSWN MI+GY R
Sbjct: 54  KILHAHLLKTHYLQSGIFFMDSLIGLYCKSSDMVLAHKLFDTITQPSIVSWNVMISGYVR 113

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +    ++L +F  M   G +PDE +   VLSAC        G + F  + K+     S  
Sbjct: 114 NSMFLKSLEMFCRMHLFGFEPDEFSYGSVLSACVALQASMFGLQVFSLVVKN-GFLSSGY 172

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELG 523
             T M+D+  +     EA     +   +   ASW A++  +  +G  ++ 
Sbjct: 173 VQTQMVDMFCKNCNFSEALRFFNDASCD-NVASWNAIISLAVKNGENQVA 221


>Medtr8g068150.1 | SLOW growth protein, putative | HC |
           chr8:28404022-28408146 | 20130731
          Length = 633

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 310/568 (54%), Gaps = 37/568 (6%)

Query: 74  LFDSMPQKDVVSWNAMLSGYAQ-NGYADEAREVFYQMPHKNAIS------------WNGL 120
           LF  +   D+  WNA++  Y+Q +        +F  M + + +              N L
Sbjct: 71  LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVL 130

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           ++A     ++   C +  +    ++   N L+  +     +  A K+FD+  VRD VS+N
Sbjct: 131 ISAPQFGFQVH--CHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFN 188

Query: 181 TMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEART-------F 229
           TMI+G+A+ GD+S    +F +        D +T+ A++SG     +L++ R         
Sbjct: 189 TMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSG---CSVLEDYRIGRQVHGLV 245

Query: 230 FDQMP--QKNEISYNAMVAGYVQSNKMDMARELFEAM-PSRNV-SSWNTMITGYGQNGDI 285
           + ++     N +  N +V  Y +  ++ MA  +   + P ++V ++W ++++ Y   G++
Sbjct: 246 YRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEV 305

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
             AR+LFD M +RD VSW A+ISGY+  G ++EAL +F++++  G   +      ALS C
Sbjct: 306 KVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSAC 365

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVG--NALLGMYFKCGSIGEANDVFEGI--EEKDV 401
           A + ALELG++IH Q     +      G  +A++ MY KCGSI  A DVF     ++K  
Sbjct: 366 ARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTT 425

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
             +N++I+G A HG G+ A  +FE M  +G+KPD IT V VLSAC H GL+D G + F S
Sbjct: 426 FLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFES 485

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M   Y V+P  +HY CM+DLLGRAG L+EA  L+  MPF+  A  W ALL A ++HG+  
Sbjct: 486 MFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVA 545

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           L   A+  + +++  +   YV+LSN+ + + +  +A ++R  + +VG+QK  G+S+VE+ 
Sbjct: 546 LARVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMN 605

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDL 609
             +HKF  GD  HPE       L ++++
Sbjct: 606 RSLHKFLAGDKSHPEAKTTELMLRDINI 633



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 30/292 (10%)

Query: 25  NAMISGYLRNARFSLARDLFDKM-PQRDLVS-WNVMLTGYVRNRRLGDARRLFDSMPQKD 82
           N ++  Y +  R  +A  +   + P + +V+ W  +++ Y     +  ARRLFD M ++D
Sbjct: 260 NKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERD 319

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFD 138
           VVSW AM+SGY+  G   EA E+F ++       + ++    L+A    G +E   R+  
Sbjct: 320 VVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRI-- 377

Query: 139 SKSDWELISWNC---------LMGGFVKRKMLGAARKLFDKMH--VRDVVSWNTMISGYA 187
               +   +W C         ++  + K   +  A  +F K     +    +N++ISG A
Sbjct: 378 -HRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLA 436

Query: 188 QDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS--- 240
             G    AKNLF++        D  T+ A++S     G++D  +  F+ M     +S   
Sbjct: 437 HHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEM 496

Query: 241 --YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQAR 289
             Y  MV    ++  +D A  L   MP + N   W  +++    +GD+A AR
Sbjct: 497 EHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALAR 548



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 144/327 (44%), Gaps = 28/327 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----PQ 80
           NA+++ Y        A  +FD+   RD VS+N M+ G+ R   +    R+F  M     +
Sbjct: 157 NALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVR 216

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHK------NAISWNGLLAAYVHNGRIEEAC 134
            D  ++ A+LSG +        R+V   +  +      N +  N L+  Y   GR+  A 
Sbjct: 217 PDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAE 276

Query: 135 RLFDSKSDWELI--SWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
            +       + +  +W  L+  +  R  +  AR+LFD+M  RDVVSW  MISGY+  G  
Sbjct: 277 TVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCF 336

Query: 193 SQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN-EISYN----- 242
            +A  LF +        D     A +S   + G L+  R    Q   +N   S N     
Sbjct: 337 QEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTS 396

Query: 243 AMVAGYVQSNKMDMARELFEAMPSRNVSS--WNTMITGYGQNGDIAQARKLFDMMP---- 296
           A+V  Y +   +D+A ++F        ++  +N++I+G   +G    A+ LF+ M     
Sbjct: 397 AVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGL 456

Query: 297 QRDCVSWAAIISGYAQTGHYEEALNMF 323
           + D +++ A++S     G  +    +F
Sbjct: 457 KPDNITFVAVLSACGHCGLVDFGKKLF 483



 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 178/404 (44%), Gaps = 46/404 (11%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNVML 59
           G   +A +VF+    R  VS+N MI+G+ R    S    +F +M     + D  ++  +L
Sbjct: 167 GDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALL 226

Query: 60  TG--YVRNRRLGDARRLFDSMPQK------DVVSWNAMLSGYAQNGYADEAREVFYQM-P 110
           +G   + + R+G  R++   + ++      +V+  N ++  YA+ G    A  V   + P
Sbjct: 227 SGCSVLEDYRIG--RQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKP 284

Query: 111 HKNAI-SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
            K+ + +W  L++AY   G ++ A RLFD   + +++SW  ++ G+        A +LF 
Sbjct: 285 GKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFV 344

Query: 170 KMH----VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT---------AMVSG 216
           K+       D V+    +S  A+ G +   + +  Q   ++   WT         A+V  
Sbjct: 345 KLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGEN---WTCSINRGFTSAVVDM 401

Query: 217 YVQNGMLDEARTFFDQMP--QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWN- 273
           Y + G +D A   F +    +K    YN++++G     + + A+ LFE M    +   N 
Sbjct: 402 YAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNI 461

Query: 274 ---TMITGYGQNGDIAQARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNMFIE 325
               +++  G  G +   +KLF+ M     VS     +  ++    + GH +EA  + ++
Sbjct: 462 TFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILK 521

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG 369
           +       N   +   LS C     + L +    ++V+  ++ G
Sbjct: 522 MPFKA---NAVIWRALLSACKVHGDVALARVASYELVELQHDHG 562


>Medtr8g028890.1 | PPR containing plant-like protein | HC |
           chr8:11200768-11198782 | 20130731
          Length = 655

 Score =  315 bits (806), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 300/589 (50%), Gaps = 65/589 (11%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEA----------REV 105
           N +L+ Y++ +   DA++LF+ +P ++VVSWN M+         +E+          R +
Sbjct: 99  NQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRM 158

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRL--FDSKSDWELISW-NC-LMGGFVKRKML 161
             +M   + I++NGL+        IE   +L  F  K  ++L  +  C L+G + K   +
Sbjct: 159 LLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFV 218

Query: 162 GAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGY 217
             AR++F  +  RD+V WN M+S Y  +    +A  +F+       + D FT+++++S  
Sbjct: 219 ENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLS-- 276

Query: 218 VQNGMLDEARTFFD-----------QMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
               + D+A  ++D           Q    + +  +A++  Y +S  +  AR +F+ M  
Sbjct: 277 ---VISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSI 333

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
           RNV +WNTMI G+G +GD  +  KL                                 E+
Sbjct: 334 RNVVAWNTMIVGFGNHGDGNEVMKLVK-------------------------------EM 362

Query: 327 KRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSI 386
            R+G   +  T S  +S+C   +A+    Q+H   VK   +    V N+L+  Y KCGSI
Sbjct: 363 LREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLSVANSLISAYSKCGSI 422

Query: 387 GEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
             A   FE   + D+V+W ++I  YA HG  +++  +FE M + G+KPD I  +GVLSAC
Sbjct: 423 TSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSAC 482

Query: 447 SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS 506
           +H GL+ +G  YF  M   Y + P S+HYTC++DLLGR G + EA +++R+MP E  + +
Sbjct: 483 AHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDT 542

Query: 507 WGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRD 566
            GA +G+ ++H N EL + AAE +F +EP  S  Y ++SN++A+   W D   +R  M D
Sbjct: 543 LGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIRKTMED 602

Query: 567 VGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
               KV G SW+E+ N+IH F   D  HP    +Y  L  L   M+ + 
Sbjct: 603 KRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALEMYVTLNMLLRPMKEQN 651



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 213/494 (43%), Gaps = 85/494 (17%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV-RN-------RRLGDA--RRL 74
           N ++S YL+      A+ LF+++P R++VSWN+M+   V RN        RL  +  RR+
Sbjct: 99  NQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRM 158

Query: 75  FDSMPQKDVVSWN-----------------------------------AMLSGYAQNGYA 99
              M   D +++N                                   A++  YA+ G+ 
Sbjct: 159 LLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFV 218

Query: 100 DEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS-------------KSDWELI 146
           + AR VF  +  ++ + WN +++ YV N   EEA R+F+S              S   +I
Sbjct: 219 ENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVI 278

Query: 147 SWNCL-MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ 205
           S + L    F K+      R+ FD     DV+  + +I+ YA+  ++  A+ +FD+   +
Sbjct: 279 SDDALEYYDFGKQVHSLVLRQSFDS----DVLVASALINMYAKSENIIDARRVFDEMSIR 334

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISYNAMVA--GYVQSNKMDMARE 259
           +V  W  M+ G+  +G  +E      +M ++    +E++ +++++  GY  +    +   
Sbjct: 335 NVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVH 394

Query: 260 LFEAMPSRN--VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE 317
            F    S    +S  N++I+ Y + G I  A K F++  Q D V+W ++I  YA  G  E
Sbjct: 395 AFAVKLSCQDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAE 454

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHG------QVVKTGYETGCF 371
           ++  MF ++   G   +R  F   LS CA    +  G           Q+V       C 
Sbjct: 455 KSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCL 514

Query: 372 VGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGFGKQALMVFESMKTI 430
           V   LLG Y   G I EA ++   +  E D  +    I     H   + A +  E  K  
Sbjct: 515 VD--LLGRY---GLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAE--KLF 567

Query: 431 GVKPDEITMVGVLS 444
            ++P++     V+S
Sbjct: 568 LIEPEKSVNYAVMS 581



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 99/199 (49%), Gaps = 15/199 (7%)

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEE--------AL 320
           +S  N +++ Y +  +   A+KLF+ +P R+ VSW  +I   A  G  +E          
Sbjct: 95  LSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIR--ASVGRNDENESSGMRLCF 152

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
           + F  +  +    +  TF+  +  C     +E+G Q+H   VK G++  CFVG AL+G+Y
Sbjct: 153 SYFRRMLLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLY 212

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
            KCG +  A  VF  +  +D+V WN M++ Y  +   ++A  VF SM+   V  DE T  
Sbjct: 213 AKCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFS 272

Query: 441 GVLSACSHAGLIDRGTEYF 459
            +LS  S     D   EY+
Sbjct: 273 SLLSVIS-----DDALEYY 286



 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 178/432 (41%), Gaps = 93/432 (21%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP------------- 48
           + G  ++A RVF  +  R  V +N M+S Y+ N+    A  +F+ M              
Sbjct: 214 KCGFVENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSS 273

Query: 49  ----------------------------QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ 80
                                         D++  + ++  Y ++  + DARR+FD M  
Sbjct: 274 LLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSI 333

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHK----------NAISWNGLLAAY-----V 125
           ++VV+WN M+ G+  +G  +E  ++  +M  +          + IS  G  +A      V
Sbjct: 334 RNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQV 393

Query: 126 HNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISG 185
           H   ++ +C+ F S +       N L+  + K   + +A K F+     D+V+W ++I  
Sbjct: 394 HAFAVKLSCQDFLSVA-------NSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYA 446

Query: 186 YAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI-- 239
           YA  G   ++  +F++        D   +  ++S     G++ +   +F  M    +I  
Sbjct: 447 YAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVP 506

Query: 240 ---SYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ---NGDIAQ--ARKL 291
               Y  +V    +   ++ A E+  +MP    S       G  +   N ++A+  A KL
Sbjct: 507 DSEHYTCLVDLLGRYGLINEAFEILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKL 566

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYE--EALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
           F + P++  V++A + + +A   H+   E +   +E KRD +          +  C+ I 
Sbjct: 567 FLIEPEKS-VNYAVMSNIFASQKHWYDVERIRKTMEDKRDAK----------VPGCSWI- 614

Query: 350 ALELGKQIHGQV 361
             E+G QIH  V
Sbjct: 615 --EIGNQIHSFV 624



 Score = 59.7 bits (143), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           AL   A    L  GKQ+H  ++K G+     + N +L +Y KC    +A  +FE +  ++
Sbjct: 66  ALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRN 125

Query: 401 VVSWNTMI-AGYARHGFGKQALM-----VFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
           VVSWN MI A   R+   + + M      F  M    + PD IT  G++  C+    I+ 
Sbjct: 126 VVSWNIMIRASVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFNDIEM 185

Query: 455 GTE 457
           G +
Sbjct: 186 GVQ 188


>Medtr3g072900.1 | PPR containing plant-like protein | HC |
           chr3:32815251-32818532 | 20130731
          Length = 745

 Score =  314 bits (804), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/698 (27%), Positives = 339/698 (48%), Gaps = 109/698 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT------------------------ 60
           N MIS Y + +    AR++FD+MP R++VSW  M++                        
Sbjct: 42  NNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIE 101

Query: 61  --------------GYVRNRRLGDA--RRLFDSMPQKDVVSWNAMLSGYAQNGYADEARE 104
                         G VRN  LG      +F +    D+V  NA+L  Y + G   +A+ 
Sbjct: 102 QPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQR 161

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKR------ 158
           VF ++P KNA SWN L+  Y   G I++A +LFD   + +++SWN ++ G V        
Sbjct: 162 VFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRAL 221

Query: 159 ----------------------KMLGAARKLF--DKMHVRDVVS--------WNTMISGY 186
                                 K  G + +L    ++H   + S         + +I  Y
Sbjct: 222 RFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMY 281

Query: 187 AQDGDMSQAKNLFDQ-----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----N 237
           +    +S+A  +FDQ     S  + +  W +M+SG+V NG   EA +    M +     +
Sbjct: 282 SSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFD 341

Query: 238 EISYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFD 293
             +++ ++   +  + + +A ++   + +     +    + +I  Y + G I  A +LF+
Sbjct: 342 FYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFE 401

Query: 294 MMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL 353
            +P +D V+W+++I+G A+ G  + A ++F+++   G  ++    S  L  C+ +A+ + 
Sbjct: 402 RLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQH 461

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           GKQ+H   +K GYE+   V  AL+ MY KCG I +A  +F  + E D +SW ++I G A+
Sbjct: 462 GKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQ 521

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           +G  ++A+ +   M   G KP++IT++GVL+AC H+GL++   + F S+  ++ + P  +
Sbjct: 522 NGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPE 581

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY CM+D+LG+AGR EEA  L+  MPF+P    W +LLGA   + N +L    AE +   
Sbjct: 582 HYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLAT 641

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
            P +  +Y++LSN+YAA G W     +R  ++ +G +K  G  + E+  K          
Sbjct: 642 SPEDVSVYIMLSNVYAALGMWDSVSKVRETVKKIG-KKRAGKIFYEIPFK---------- 690

Query: 594 HPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEE 631
                  + F+E L L   ++G       V++ + E +
Sbjct: 691 -------FYFMEHLHLGHAKQGLNGGVVKVIYPILEPD 721



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 188/450 (41%), Gaps = 52/450 (11%)

Query: 9   ALRVFNTMPRRSSVS-----YNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNVML 59
           A ++F+   R SSVS     +N+M+SG++ N  +  A  +   M +     D  +++++L
Sbjct: 290 ATKIFDQYFRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVL 349

Query: 60  TGYVRNRRLGDARRL----FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI 115
              +    L  A ++      S  + D V  + ++  YA+ G  + A  +F ++P K+ +
Sbjct: 350 KICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVV 409

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
           +W+ L+      G  + A  LF      ++I     +  FV   +L A   L    H + 
Sbjct: 410 AWSSLITGCARFGSDKLAFSLF-----MDMIHLGLQIDHFVISIVLKACSSLASHQHGKQ 464

Query: 176 V-------------VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
           V             V    +I  YA+ GD+  A +LF      D  +WT+++ G  QNG 
Sbjct: 465 VHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGR 524

Query: 223 LDEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN-----VSSWN 273
            +EA +   +M     + N+I+   ++     S  ++ A ++F ++ + +        +N
Sbjct: 525 AEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYN 584

Query: 274 TMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
            M+   GQ G   +A KL   MP + D   W++++ G   T    +  N+  E       
Sbjct: 585 CMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLL-GACGTYKNRDLANIVAEHLLATSP 643

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYE-TGCFVGNALLGMYF---------K 382
            + S +    +  A +   +   ++   V K G +  G          YF         K
Sbjct: 644 EDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKRAGKIFYEIPFKFYFMEHLHLGHAK 703

Query: 383 CGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G  G    V   I E D+VSWN +IAG A
Sbjct: 704 QGLNGGVVKVIYPILEPDLVSWNNVIAGLA 733



 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 341 ALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           A   C    +++  K +H  ++K+G+    F+ N ++ +Y KC SI +A ++F+ +  ++
Sbjct: 9   AFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRN 68

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESMKTIGV-KPDEITMVGVLSACSHAGLIDRGTEYF 459
           +VSW TM++         +AL ++  M    + +P++     VL AC     ++ G    
Sbjct: 69  IVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVH 128

Query: 460 YSMNK---DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           Y + +   D  +   +     ++D+  + G L +AQ +   +P +  A SW  L+
Sbjct: 129 YHIFQAKLDVDIVLMNA----LLDMYVKCGSLRDAQRVFCEIPCK-NATSWNTLI 178


>Medtr2g024080.1 | PPR containing plant-like protein | HC |
           chr2:8563899-8566215 | 20130731
          Length = 767

 Score =  313 bits (802), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/629 (29%), Positives = 314/629 (49%), Gaps = 62/629 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ---- 80
           +++I+ Y++     +AR +FD MP+R++V W  ++  Y    ++GD R  F    Q    
Sbjct: 108 SSLINFYVKFGYNDVARKVFDFMPERNVVPWTTVIGCY---SKMGDVREAFSLFRQMRYE 164

Query: 81  -----------------------------------KDVVSWNAMLSGYAQNGYADEAREV 105
                                               D+   N+M++ Y + G  ++ R++
Sbjct: 165 GIQPSSVTLLSLLFGVSEVPYVQCLHGCAIFYGFMSDLNLLNSMVNLYGKCGSIEDCRKL 224

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
           F  M  ++ +SWN LL+AY   G + E   L        L       G  +   +     
Sbjct: 225 FEFMDRRDVVSWNSLLSAYAQIGDLCEVLLLLKRMKLQGLEPGLQAFGSVLSVAVSTGDM 284

Query: 166 KLFDKMH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY 217
           +L   +H        V D     + I  Y + G+++ A  +F++S  +DV  WTAM+SG 
Sbjct: 285 RLGRLVHGQILRGGFVLDAHIETSFIVMYLKGGNINVAFKMFERSLDKDVVLWTAMISGL 344

Query: 218 VQNGMLDEARTFFDQM------PQKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSR 267
           VQN   D+A   FDQM      P    ++  +++    Q    ++ + +         S 
Sbjct: 345 VQNENADKALAVFDQMFKFGMKPSTETMA--SVITACAQLGAFNLGKSIHGYILRQKLSL 402

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           + ++ N+++T Y + G + Q+  +FD M +RD VSW AI++GYAQ G   +A ++F E++
Sbjct: 403 DTAAHNSLVTMYAKCGHLDQSYIVFDRMSKRDLVSWNAIVAGYAQNGCVYKAFSLFNEMR 462

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
              ++ +  T    +  CA    L  GK IHG V++ G      V  +L+ MY KCG + 
Sbjct: 463 SCHQTPDSITIVSLVQGCASTGQLHPGKWIHGFVIRNGLRPCILVDTSLVDMYCKCGDLD 522

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
            A   F  +  +D+VSW+ +IAGY  HG G+ AL ++       +KP+ +  + +LS+CS
Sbjct: 523 SAQRCFNLMPSQDLVSWSAIIAGYGYHGKGETALRLYSKFLETRIKPNHVIFLSILSSCS 582

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H GLID+G   + SM +D+   P+ +H+ CM+DLL RAG++EEA +L + M  +P     
Sbjct: 583 HNGLIDQGLNIYESMTRDFGFVPNLEHHACMVDLLCRAGKVEEAYNLYKRMFSDPVLDVL 642

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
           G +L A R +GN ELG+  A  + K+ P ++G YV L++ YA+  +W   G + + MR +
Sbjct: 643 GIILDACRANGNKELGDIIANDIIKLRPMSAGNYVQLAHCYASINKWEGVGEVWTHMRSL 702

Query: 568 GVQKVTGYSWVEVQNKIHKFTVGDCFHPE 596
           G++K+ G+S++++   I  F      HP+
Sbjct: 703 GLRKIPGWSFIDIHGTITTFFTDHNSHPQ 731



 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 9/214 (4%)

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           S+ A+I+ ++  G + + L  +  +       +  TF   L  C+ +    LG  +H +V
Sbjct: 36  SYNALINRHSTQGAHRQVLITYTSMLNANIPSDAYTFPSLLKACSFLNLFHLGNSLHQRV 95

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           +  G  T  ++ ++L+  Y K G    A  VF+ + E++VV W T+I  Y++ G  ++A 
Sbjct: 96  IVNGLSTDSYIASSLINFYVKFGYNDVARKVFDFMPERNVVPWTTVIGCYSKMGDVREAF 155

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGLID--RGTEYFYSMNKDYSVTPSSKHYTCMI 479
            +F  M+  G++P  +T++ +L   S    +    G   FY    D ++  S      M+
Sbjct: 156 SLFRQMRYEGIQPSSVTLLSLLFGVSEVPYVQCLHGCAIFYGFMSDLNLLNS------MV 209

Query: 480 DLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
           +L G+ G +E+ + L   M       SW +LL A
Sbjct: 210 NLYGKCGSIEDCRKLFEFMD-RRDVVSWNSLLSA 242



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 145/320 (45%), Gaps = 25/320 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQRDLVS 54
           ++ G+ + A ++F     +  V + AMISG ++N     A  +FD+M      P  + ++
Sbjct: 314 LKGGNINVAFKMFERSLDKDVVLWTAMISGLVQNENADKALAVFDQMFKFGMKPSTETMA 373

Query: 55  WNVMLTGYVRNRRLGDARR--LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
             +     +    LG +    +       D  + N++++ YA+ G+ D++  VF +M  +
Sbjct: 374 SVITACAQLGAFNLGKSIHGYILRQKLSLDTAAHNSLVTMYAKCGHLDQSYIVFDRMSKR 433

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDW----ELISWNCLMGGFVKRKMLGAAR--- 165
           + +SWN ++A Y  NG + +A  LF+         + I+   L+ G      L   +   
Sbjct: 434 DLVSWNAIVAGYAQNGCVYKAFSLFNEMRSCHQTPDSITIVSLVQGCASTGQLHPGKWIH 493

Query: 166 KLFDKMHVRDVVSWNT-MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
               +  +R  +  +T ++  Y + GD+  A+  F+  P QD+ +W+A+++GY  +G  +
Sbjct: 494 GFVIRNGLRPCILVDTSLVDMYCKCGDLDSAQRCFNLMPSQDLVSWSAIIAGYGYHGKGE 553

Query: 225 EA----RTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPS-----RNVSSWNTM 275
            A      F +   + N + + ++++    +  +D    ++E+M        N+     M
Sbjct: 554 TALRLYSKFLETRIKPNHVIFLSILSSCSHNGLIDQGLNIYESMTRDFGFVPNLEHHACM 613

Query: 276 ITGYGQNGDIAQARKLFDMM 295
           +    + G + +A  L+  M
Sbjct: 614 VDLLCRAGKVEEAYNLYKRM 633


>Medtr4g098940.1 | PPR containing plant-like protein | HC |
           chr4:40871758-40869320 | 20130731
          Length = 575

 Score =  312 bits (800), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 286/544 (52%), Gaps = 26/544 (4%)

Query: 43  LFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEA 102
           + + + Q  L+S   +       R    +   FD +   D    N ++  Y ++     A
Sbjct: 44  IINNLIQHPLLSTTAIKKLSSHPRTTPSSALFFDHLHHPDAFLCNTIIRSYLRSSNPSAA 103

Query: 103 REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLG 162
              +Y      ++  N      +    ++  C+L   K    ++ +  L   FV+     
Sbjct: 104 FHFYYHRMIAKSVPPNHYTFPLILKLCVDHGCKLEGEKGHARVVKFGFLSDLFVR----- 158

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
                            N++I  Y+  G +  A+ +F +S   D+ ++  M+ GYV+NG 
Sbjct: 159 -----------------NSLIRMYSVFGRIDDARLIFYESYVLDLVSYNTMIDGYVKNGG 201

Query: 223 LDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQN 282
           + +AR  FD+M +++  S+N M+AGYV    +  A+ELFEAMP+++V SWN MI G  + 
Sbjct: 202 IRDARKLFDEMYERDVFSWNCMIAGYVSVGDLAAAKELFEAMPNKDVVSWNCMIDGCVRV 261

Query: 283 GDIAQARKLFDMMP---QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL-NRSTF 338
           G+++ A + F+ M     R+ VSW ++++ + +  +Y E L MF  +   GE++ N +T 
Sbjct: 262 GNVSLALEFFNQMDGVVVRNVVSWNSLLALHVRMKNYGECLRMFERMMESGEAMPNEATL 321

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
              L+ CA++  L LG  +H  +     +    +   LL MY KCG++  A+DVF  +  
Sbjct: 322 VSVLTACANLGKLNLGLWVHSYIKSNEIKLDVLLETCLLTMYAKCGAMDLASDVFVEMPV 381

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
           K +VSWN+MI GY  HG G +AL +F  M+  G KP+E T + VLSACSHAG++  G  Y
Sbjct: 382 KSIVSWNSMIMGYGLHGNGDKALEMFAEMEKAGQKPNEATFICVLSACSHAGMVMEGWWY 441

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           F  M + Y + P  +HY CM+DLL RAG ++ +++L+  +  +  +A WGALL   R H 
Sbjct: 442 FDLMRRVYKIEPKVEHYGCMVDLLARAGFVKNSEELIEKVSVKGGSAMWGALLSGCRTHL 501

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           + EL E  A+ + ++EP +   Y+LLS++YAA GRW D   +R  M+  G+QK    S V
Sbjct: 502 DLELAENVAKRLVELEPQDISPYILLSDVYAAQGRWDDVERVRLAMKINGLQKEAASSLV 561

Query: 579 EVQN 582
            +++
Sbjct: 562 HLED 565



 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 176/386 (45%), Gaps = 62/386 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  D A  +F        VSYN MI GY++N     AR LFD+M +RD+ SWN M+ GYV
Sbjct: 169 GRIDDARLIFYESYVLDLVSYNTMIDGYVKNGGIRDARKLFDEMYERDVFSWNCMIAGYV 228

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH---KNAISWNGL 120
               L  A+ LF++MP KDVVSWN M+ G  + G    A E F QM     +N +SWN L
Sbjct: 229 SVGDLAAAKELFEAMPNKDVVSWNCMIDGCVRVGNVSLALEFFNQMDGVVVRNVVSWNSL 288

Query: 121 LAAYVHNGRIEEACRLFDS--------KSDWELIS---------------W--------- 148
           LA +V      E  R+F+          ++  L+S               W         
Sbjct: 289 LALHVRMKNYGECLRMFERMMESGEAMPNEATLVSVLTACANLGKLNLGLWVHSYIKSNE 348

Query: 149 --------NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF- 199
                    CL+  + K   +  A  +F +M V+ +VSWN+MI GY   G+  +A  +F 
Sbjct: 349 IKLDVLLETCLLTMYAKCGAMDLASDVFVEMPVKSIVSWNSMIMGYGLHGNGDKALEMFA 408

Query: 200 -----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYV 249
                 Q P++  F    ++S     GM+ E   +FD M +  +I      Y  MV    
Sbjct: 409 EMEKAGQKPNEATF--ICVLSACSHAGMVMEGWWYFDLMRRVYKIEPKVEHYGCMVDLLA 466

Query: 250 QSNKMDMARELFEAMPSRNVSS-WNTMITGYGQNGDIAQ----ARKLFDMMPQRDCVSWA 304
           ++  +  + EL E +  +  S+ W  +++G   + D+      A++L ++ PQ D   + 
Sbjct: 467 RAGFVKNSEELIEKVSVKGGSAMWGALLSGCRTHLDLELAENVAKRLVELEPQ-DISPYI 525

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDG 330
            +   YA  G +++   + + +K +G
Sbjct: 526 LLSDVYAAQGRWDDVERVRLAMKING 551



 Score =  137 bits (345), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 162/330 (49%), Gaps = 54/330 (16%)

Query: 30  GYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAM 89
           G+ R  +F    DLF +         N ++  Y    R+ DAR +F      D+VS+N M
Sbjct: 142 GHARVVKFGFLSDLFVR---------NSLIRMYSVFGRIDDARLIFYESYVLDLVSYNTM 192

Query: 90  LSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWN 149
           + GY +NG   +AR++F +M  ++  SWN ++A YV  G +  A  LF++  + +++SWN
Sbjct: 193 IDGYVKNGGIRDARKLFDEMYERDVFSWNCMIAGYVSVGDLAAAKELFEAMPNKDVVSWN 252

Query: 150 CLMGGFVKRKMLGAARKLFDKMH---VRDVVSWNTMISGYAQDGDMSQAKNLFDQ----- 201
           C++ G V+   +  A + F++M    VR+VVSWN++++ + +  +  +   +F++     
Sbjct: 253 CMIDGCVRVGNVSLALEFFNQMDGVVVRNVVSWNSLLALHVRMKNYGECLRMFERMMESG 312

Query: 202 SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG-----YVQSNKMDM 256
               +  T  ++++     G L+    +     + NEI  + ++       Y +   MD+
Sbjct: 313 EAMPNEATLVSVLTACANLGKLNLG-LWVHSYIKSNEIKLDVLLETCLLTMYAKCGAMDL 371

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
           A ++F  MP +++ SWN+MI GYG +G+                                
Sbjct: 372 ASDVFVEMPVKSIVSWNSMIMGYGLHGN-------------------------------G 400

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCA 346
           ++AL MF E+++ G+  N +TF C LS C+
Sbjct: 401 DKALEMFAEMEKAGQKPNEATFICVLSACS 430



 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 174/362 (48%), Gaps = 28/362 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++I  Y    R   AR +F +    DLVS+N M+ GYV+N  + DAR+LFD M ++DV 
Sbjct: 159 NSLIRMYSVFGRIDDARLIFYESYVLDLVSYNTMIDGYVKNGGIRDARKLFDEMYERDVF 218

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF---DSKS 141
           SWN M++GY   G    A+E+F  MP+K+ +SWN ++   V  G +  A   F   D   
Sbjct: 219 SWNCMIAGYVSVGDLAAAKELFEAMPNKDVVSWNCMIDGCVRVGNVSLALEFFNQMDGVV 278

Query: 142 DWELISWNCLMGGFVKRKMLGAARKLFDKM-----HVRDVVSWNTMISGYAQDGDMSQA- 195
              ++SWN L+   V+ K  G   ++F++M      + +  +  ++++  A  G ++   
Sbjct: 279 VRNVVSWNSLLALHVRMKNYGECLRMFERMMESGEAMPNEATLVSVLTACANLGKLNLGL 338

Query: 196 ---KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSN 252
                +       DV   T +++ Y + G +D A   F +MP K+ +S+N+M+ GY    
Sbjct: 339 WVHSYIKSNEIKLDVLLETCLLTMYAKCGAMDLASDVFVEMPVKSIVSWNSMIMGYGLHG 398

Query: 253 KMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMM-------PQRDCV 301
             D A E+F  M       N +++  +++     G + +    FD+M       P+ +  
Sbjct: 399 NGDKALEMFAEMEKAGQKPNEATFICVLSACSHAGMVMEGWWYFDLMRRVYKIEPKVE-- 456

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
            +  ++   A+ G  + +  +  ++   G S   + +   LS C     LEL + +  ++
Sbjct: 457 HYGCMVDLLARAGFVKNSEELIEKVSVKGGS---AMWGALLSGCRTHLDLELAENVAKRL 513

Query: 362 VK 363
           V+
Sbjct: 514 VE 515


>Medtr2g036960.1 | PPR containing plant-like protein | HC |
           chr2:16044626-16048085 | 20130731
          Length = 702

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/450 (36%), Positives = 263/450 (58%), Gaps = 11/450 (2%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK--- 236
           N+M++ Y + G+   A+ +FD+   +D+ +W +++SGY + G   EA   F ++ ++   
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGF 215

Query: 237 --NEISYNAMVAGYVQSNKMDMAR--ELFEAMPSRNVSSW--NTMITGYGQNGDIAQARK 290
             +E+S  +++    +   +++ R  E F       V+S+  + +I+ Y + G++  +R+
Sbjct: 216 EPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRR 275

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +FD MP RD ++W A IS YAQ G  +EA+++F  +K +G   N+ T +  LS CA I A
Sbjct: 276 IFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGA 335

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
           L+LGKQ+       G +   FV  AL+ MY KCGS+  A  VF  +  K+  SWN MI+ 
Sbjct: 336 LDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISA 395

Query: 411 YARHGFGKQALMVFESMKTIG--VKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSV 468
            A HG  K+AL +FE M   G   +P++IT V +LSAC HAGL+D G   F  M+  + +
Sbjct: 396 LASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGL 455

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAE 528
            P  +HY+CM+DLL RAG L EA D++  MP +P   + GAL  A +   N ++GE+  +
Sbjct: 456 VPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQ 515

Query: 529 MVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFT 588
           M+ +++P NSG Y++ S +Y     W DA  MR+ MR+ GV K  G SW+EV N++ +F 
Sbjct: 516 MLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFL 575

Query: 589 VGDCFHPEKDRIYAFLEELDLKMRREGYVS 618
            GD    +   +   ++ L  ++++EGY+S
Sbjct: 576 SGDGLTLDSIDVRNIIDLLYEELKKEGYLS 605



 Score =  169 bits (429), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 181/359 (50%), Gaps = 37/359 (10%)

Query: 194 QAKNLFDQSPHQDVFTWTAMV--------SGYVQNGMLDEARTFFDQMP----------- 234
           +  +L  QS     FT++ ++        + Y  N ML    T +   P           
Sbjct: 51  KPNHLLSQSISLKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKT 110

Query: 235 ---QKNEISYNAMVAGYVQSNKMDMAR----ELFEAMPSRNVSSWNTMITGYGQNGDIAQ 287
                N  ++  +        ++ MAR    E+F+     +  + N+M+T Y + G+   
Sbjct: 111 LNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGV 170

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GESLNRSTFSCALSTCA 346
           ARK+FD + ++D VSW +++SGYA+ G   EA+ +F  ++ + G   +  +    L  C 
Sbjct: 171 ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACG 230

Query: 347 DIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNT 406
           ++  LELG+ + G VV+ G +   ++G+AL+ MY KCG +  +  +F+G+  +D ++WN 
Sbjct: 231 ELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNA 290

Query: 407 MIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDY 466
            I+ YA++G   +A+ +F SMK  GV P+++T+  VLSAC+  G +D G +       +Y
Sbjct: 291 AISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQM-----DEY 345

Query: 467 SVTPSSKH----YTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           +     +H     T +ID+  + G LE AQ +  +MP     ASW A++ A   HG  +
Sbjct: 346 ATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP-RKNDASWNAMISALASHGKAK 403



 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 147/327 (44%), Gaps = 63/327 (19%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR--------DLV 53
           R G    A +VF+ +  +  VS+N+++SGY +      A ++F ++ +          LV
Sbjct: 164 RCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLV 223

Query: 54  S---------------W-----------------NVMLTGYVRNRRLGDARRLFDSMPQK 81
           S               W                 + +++ Y +   L  +RR+FD MP +
Sbjct: 224 SVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSR 283

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLF 137
           D ++WNA +S YAQNG ADEA  +F+ M       N ++   +L+A    G ++   ++ 
Sbjct: 284 DFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMD 343

Query: 138 DSKS----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
           +  +      ++     L+  + K   L +A+++F+ M  ++  SWN MIS  A  G   
Sbjct: 344 EYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAK 403

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM-------PQKNEIS 240
           +A +LF++      S   +  T+ +++S  V  G++DE    FD M       P+     
Sbjct: 404 EALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEH-- 461

Query: 241 YNAMVAGYVQSNKMDMARELFEAMPSR 267
           Y+ MV    ++  +  A ++ E MP +
Sbjct: 462 YSCMVDLLSRAGHLYEAWDVIEKMPEK 488


>Medtr2g007570.1 | PPR containing plant-like protein | HC |
           chr2:1033154-1029007 | 20130731
          Length = 558

 Score =  311 bits (797), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/520 (33%), Positives = 289/520 (55%), Gaps = 34/520 (6%)

Query: 71  ARRLFDSMPQ-KDVVSWNAMLSGY-AQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNG 128
           A +LFD+MP   +   W +++  + + + +       F +M H+  I  +G   + V N 
Sbjct: 66  AHKLFDTMPNCSNCFIWTSLIRAFLSHHTHFCHCISTFARM-HQKGILPSGFTFSLVLN- 123

Query: 129 RIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
               AC    +  + + +    +  GF+  K++  A                 ++  YA+
Sbjct: 124 ----ACGRVPAGFEGKQVHARLVQSGFLGNKIVQTA-----------------LLDMYAK 162

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGY 248
            G +  A+++FD    +DV  WTAM+ GY + G + +AR  FD M ++N  ++  MVAGY
Sbjct: 163 CGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNMGERNSFTWTTMVAGY 222

Query: 249 VQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSW----- 303
                M  A EL++ M  ++  +W  MI GYG+ G++++AR++FD +     V W     
Sbjct: 223 ANYGDMKAAMELYDVMNGKDEVTWVAMIAGYGKLGNVSEARRIFDEIT----VPWNPSTC 278

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVK 363
           AA+++ YAQ GH  EA+ M+ +++R    +       A+S CA +  + +   +   + +
Sbjct: 279 AALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDIRMSNSLTYNIEE 338

Query: 364 TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV 423
              E    V NAL+ M  KCG+I  A   F  +  +D+ +++ MIA +A HG  + A+ +
Sbjct: 339 GFCEKTHIVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDL 398

Query: 424 FESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLG 483
           F  M+  G+KP+++T VGVL+ACS +GLI+ G  +F  M + Y + P  +HYTCM+DLLG
Sbjct: 399 FLKMQQEGLKPNQVTFVGVLNACSTSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLG 458

Query: 484 RAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVL 543
           RAG+LE+A  L++       A +WG+LL A R++GN ELGE AA  +F+++P +SG YVL
Sbjct: 459 RAGQLEKAYSLIKENSTSADATTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVL 518

Query: 544 LSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNK 583
           L+N YA++ +W  A  ++  M   G++K +GYSW++ + K
Sbjct: 519 LANTYASNDKWECAEEVKKLMSKKGMKKPSGYSWIQRETK 558



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 165/352 (46%), Gaps = 27/352 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A++  Y +      ARD+FD +  RD+V+W  M+ GY +  R+ DAR LFD+M +++  
Sbjct: 154 TALLDMYAKCGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNMGERNSF 213

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS-DW 143
           +W  M++GYA  G    A E++  M  K+ ++W  ++A Y   G + EA R+FD  +  W
Sbjct: 214 TWTTMVAGYANYGDMKAAMELYDVMNGKDEVTWVAMIAGYGKLGNVSEARRIFDEITVPW 273

Query: 144 ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGDMSQAKNL- 198
              +   L+  + +      A ++++KM    +    V+    IS  AQ  D+  + +L 
Sbjct: 274 NPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDIRMSNSLT 333

Query: 199 ------FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSN 252
                 F +  H       A++    + G +D A   F+ M  ++  +Y+AM+A + +  
Sbjct: 334 YNIEEGFCEKTH---IVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHG 390

Query: 253 KMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVS-----W 303
           K   A +LF  M       N  ++  ++     +G I +  + F +M +   +      +
Sbjct: 391 KSQDAIDLFLKMQQEGLKPNQVTFVGVLNACSTSGLIEEGCRFFQIMTEMYGIEPLPEHY 450

Query: 304 AAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
             ++    + G  E+A ++   IK +  S + +T+   L+ C     +ELG+
Sbjct: 451 TCMVDLLGRAGQLEKAYSL---IKENSTSADATTWGSLLAACRVYGNVELGE 499



 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 172/380 (45%), Gaps = 71/380 (18%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + GH   A  VF+ +  R  V++ AMI GY +  R   AR LFD M +R+  +W  M+ G
Sbjct: 162 KCGHVCDARDVFDGIVDRDVVAWTAMICGYAKAGRMVDARFLFDNMGERNSFTWTTMVAG 221

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN--- 118
           Y     +  A  L+D M  KD V+W AM++GY + G   EAR +F ++     + WN   
Sbjct: 222 YANYGDMKAAMELYDVMNGKDEVTWVAMIAGYGKLGNVSEARRIFDEI----TVPWNPST 277

Query: 119 --GLLAAYVHNGRIEEACRLFDSKSDWEL-------------------------ISWNCL 151
              LLA Y  NG   EA  +++     ++                         +++N +
Sbjct: 278 CAALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDIRMSNSLTYN-I 336

Query: 152 MGGFVKRKMLGA---------------ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
             GF ++  + +               A + F+ M  RD+ +++ MI+ +A+ G    A 
Sbjct: 337 EEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAI 396

Query: 197 NLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV 245
           +LF +       P+Q   T+  +++    +G+++E   FF  M +   I      Y  MV
Sbjct: 397 DLFLKMQQEGLKPNQ--VTFVGVLNACSTSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMV 454

Query: 246 AGYVQSNKMDMARELF-EAMPSRNVSSWNTMITG---YG--QNGDIAQARKLFDMMPQRD 299
               ++ +++ A  L  E   S + ++W +++     YG  + G+IA AR LF++ P  D
Sbjct: 455 DLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRVYGNVELGEIA-ARHLFEIDPT-D 512

Query: 300 CVSWAAIISGYAQTGHYEEA 319
             ++  + + YA    +E A
Sbjct: 513 SGNYVLLANTYASNDKWECA 532


>Medtr4g133610.1 | PPR containing plant-like protein | HC |
           chr4:55889196-55891282 | 20130731
          Length = 573

 Score =  310 bits (793), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/515 (32%), Positives = 284/515 (55%), Gaps = 24/515 (4%)

Query: 71  ARRLFDSMPQ-KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGR 129
           A +LFD+MP   +   W +++  +  +          + + H+  I  +G   + V N  
Sbjct: 66  AHKLFDTMPNCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLN-- 123

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
              AC    +  + + +    +  GF+  K++  A                 ++  YA+ 
Sbjct: 124 ---ACGRVPAVFEGKQVHARLVQSGFLGNKIVQTA-----------------LLDMYAKC 163

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV 249
           G +  A+++FD    +DV  WTAM+ GY + G + +AR  FD M ++N  ++  MVAGY 
Sbjct: 164 GYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNMGERNSFTWTTMVAGYA 223

Query: 250 QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIIS 308
               M  A EL++ M  +   +W  MI GYG+ G++++AR++FD +P   +  + AA+++
Sbjct: 224 NYGDMKAAMELYDVMNGKEEVTWVAMIAGYGKLGNVSEARRIFDEIPVPLNPSTCAALLA 283

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
            YAQ GH  EA+ M+ +++R    +       A+S CA +  + +   +   + +   E 
Sbjct: 284 CYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDIRMSNLLTYDIEEGFCEK 343

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
              V NAL+ M  KCG+I  A   F  +  +D+ +++ MIA +A HG  + A+ +F  M+
Sbjct: 344 THIVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQ 403

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
             G+ P+++T VGVL+ACS +GLI+ G  +F  M   Y + P  +HYTCM+DLLGRAG+L
Sbjct: 404 QEGLTPNQVTFVGVLNACSTSGLIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQL 463

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLY 548
           E+A  L++       A +WG+LL A R++GN ELGE AA  +F+++P +SG YVLL+N Y
Sbjct: 464 EKAYSLIKENSTSADATTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTY 523

Query: 549 AASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNK 583
           A++ +W  A  ++  M   G++K +GYSW++ + K
Sbjct: 524 ASNDKWERAEEVKKLMSKKGMKKPSGYSWIQRETK 558



 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 166/371 (44%), Gaps = 62/371 (16%)

Query: 6   CDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN 65
           CD A  VF+ M  R  V++ AMI GY +  R   AR LFD M +R+  +W  M+ GY   
Sbjct: 167 CD-ARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNMGERNSFTWTTMVAGYANY 225

Query: 66  RRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK-NAISWNGLLAAY 124
             +  A  L+D M  K+ V+W AM++GY + G   EAR +F ++P   N  +   LLA Y
Sbjct: 226 GDMKAAMELYDVMNGKEEVTWVAMIAGYGKLGNVSEARRIFDEIPVPLNPSTCAALLACY 285

Query: 125 VHNGRIEEACRLFDSKSDWELISWNCLMGGFV---------------------------- 156
             NG   EA  +++     ++   +  M G +                            
Sbjct: 286 AQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDIRMSNLLTYDIEEGFCEKTH 345

Query: 157 -----------KRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ---- 201
                      K   +  A + F+ M  RD+ +++ MI+ +A+ G    A +LF +    
Sbjct: 346 IVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQE 405

Query: 202 --SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKM 254
             +P+Q   T+  +++    +G+++E   FF  M     I      Y  MV    ++ ++
Sbjct: 406 GLTPNQ--VTFVGVLNACSTSGLIEEGCRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQL 463

Query: 255 DMARELF-EAMPSRNVSSWNTMITG---YG--QNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           + A  L  E   S + ++W +++     YG  + G+IA AR LF++ P  D  ++  + +
Sbjct: 464 EKAYSLIKENSTSADATTWGSLLAACRVYGNVELGEIA-ARHLFEIDPT-DSGNYVLLAN 521

Query: 309 GYAQTGHYEEA 319
            YA    +E A
Sbjct: 522 TYASNDKWERA 532



 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 25/351 (7%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
            A++  Y +      ARD+FD M  RD+V+W  M+ GY +  R+ DAR LFD+M +++  
Sbjct: 154 TALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGYAKAGRMVDARLLFDNMGERNSF 213

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWE 144
           +W  M++GYA  G    A E++  M  K  ++W  ++A Y   G + EA R+FD +    
Sbjct: 214 TWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAGYGKLGNVSEARRIFD-EIPVP 272

Query: 145 LISWNC--LMGGFVKRKMLGAARKLFDKMHVRDV----VSWNTMISGYAQDGDMSQAKNL 198
           L    C  L+  + +      A ++++KM    +    V+    IS  AQ  D+ +  NL
Sbjct: 273 LNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTDVAMVGAISACAQLRDI-RMSNL 331

Query: 199 FDQSPHQDVFTWTAMVSGYV-----QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNK 253
                 +     T +VS  +     + G +D A   F+ M  ++  +Y+AM+A + +  K
Sbjct: 332 LTYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNIMRNRDLYTYSAMIAAFAEHGK 391

Query: 254 MDMARELFEAMPSRNVSSWNTMITGY----GQNGDIAQARKLFDMMPQRDCVS-----WA 304
              A +LF  M    ++       G       +G I +  + F +M     +      + 
Sbjct: 392 SQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEGCRFFQIMTGVYGIEPLPEHYT 451

Query: 305 AIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
            ++    + G  E+A ++   IK +  S + +T+   L+ C     +ELG+
Sbjct: 452 CMVDLLGRAGQLEKAYSL---IKENSTSADATTWGSLLAACRVYGNVELGE 499


>Medtr3g011920.1 | PPR containing plant-like protein | HC |
           chr3:3106602-3104668 | 20130731
          Length = 627

 Score =  309 bits (791), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 246/397 (61%), Gaps = 14/397 (3%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
           +A+V  YV+ + ++ A++ FE     NV S+ T+I GY ++G    A ++F+ MP+R+ +
Sbjct: 199 SALVDLYVKLSSIEEAQKAFEDTEYPNVVSYTTLIGGYLKSGRFEDALRVFNEMPERNVI 258

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           SW A++ G ++ GH EEA+  FI++ R+G   N STF CA+S  ++IA+L  G+  H   
Sbjct: 259 SWNAMVGGCSKIGHNEEAVKFFIDMLREGFIPNESTFPCAISAASNIASLGFGRSFHACA 318

Query: 362 VKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQAL 421
           +K   +   FVGN+L+  Y KCGS+ ++  +F+ I +++VVSWN +I GYA +G G +A+
Sbjct: 319 IKFLGKLNDFVGNSLISFYAKCGSMKDSLLIFDKICKRNVVSWNAVICGYAHNGRGAEAI 378

Query: 422 MVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDL 481
            +FE M + G+KP++++++G+L AC+HAGL+D G  YF     +       +HY CM+DL
Sbjct: 379 SLFERMCSEGIKPNKVSLLGLLLACNHAGLVDEGFLYFNKARIESPNLLKPEHYACMVDL 438

Query: 482 LGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMY 541
           L R+GR  EAQ+ +R MPF P    W A+LG  +IH N ELGE AA+ +  ++P +   Y
Sbjct: 439 LARSGRFTEAQNFIRRMPFNPGIGFWKAILGGCQIHHNIELGELAAKNILALDPDDVSSY 498

Query: 542 VLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIY 601
           V++SN ++A+GRW+D   +R+ +++ G++++ G SW+EV+ K+H F   D      +   
Sbjct: 499 VMMSNAHSAAGRWSDVARLRTEIQEKGMKRIPGSSWIEVKGKVHAFLKAD------ENNN 552

Query: 602 AFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKY 638
              +E+D+ +R          +LH  E E  + +  Y
Sbjct: 553 NKNDEIDVLLR--------IFLLHSRENESSDWLNNY 581



 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 164/332 (49%), Gaps = 31/332 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           +A++  Y++ +    A+  F+     ++VS+  ++ GY+++ R  DA R+F+ MP+++V+
Sbjct: 199 SALVDLYVKLSSIEEAQKAFEDTEYPNVVSYTTLIGGYLKSGRFEDALRVFNEMPERNVI 258

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM------PHKN----AISWNGLLAAYVHNGRIEEAC 134
           SWNAM+ G ++ G+ +EA + F  M      P+++    AIS    +A+ +  GR   AC
Sbjct: 259 SWNAMVGGCSKIGHNEEAVKFFIDMLREGFIPNESTFPCAISAASNIAS-LGFGRSFHAC 317

Query: 135 --RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
             +     +D+     N L+  + K   +  +  +FDK+  R+VVSWN +I GYA +G  
Sbjct: 318 AIKFLGKLNDF---VGNSLISFYAKCGSMKDSLLIFDKICKRNVVSWNAVICGYAHNGRG 374

Query: 193 SQAKNLFDQSPHQDVFTWTAMVSGYV----QNGMLDEARTFFDQ--MPQKNEIS---YNA 243
           ++A +LF++   + +      + G +      G++DE   +F++  +   N +    Y  
Sbjct: 375 AEAISLFERMCSEGIKPNKVSLLGLLLACNHAGLVDEGFLYFNKARIESPNLLKPEHYAC 434

Query: 244 MVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIA----QARKLFDMMPQR 298
           MV    +S +   A+     MP +  +  W  ++ G   + +I      A+ +  + P  
Sbjct: 435 MVDLLARSGRFTEAQNFIRRMPFNPGIGFWKAILGGCQIHHNIELGELAAKNILALDPD- 493

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           D  S+  + + ++  G + +   +  EI+  G
Sbjct: 494 DVSSYVMMSNAHSAAGRWSDVARLRTEIQEKG 525



 Score =  100 bits (249), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 10/212 (4%)

Query: 273 NTMITGYGQNGD----IAQARKLFDMMPQRDCVSWAA-IISGYAQTGHYEEALNMFIEIK 327
           N + TG+  NG        A  +FD MP+   V     II+ +++   +E+A+ +F  + 
Sbjct: 93  NFLHTGFQPNGSDSITFDVACNMFDEMPELLTVGLVTEIITSFSKQSRHEDAIYLFSRML 152

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
                 N  TF   L+T   +  + +GKQIHG  +KT   +  FVG+AL+ +Y K  SI 
Sbjct: 153 ASTIRPNEFTFGTVLNTSTRLGKVGVGKQIHGCAIKTSLCSNVFVGSALVDLYVKLSSIE 212

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
           EA   FE  E  +VVS+ T+I GY + G  + AL VF  M    V    I+   ++  CS
Sbjct: 213 EAQKAFEDTEYPNVVSYTTLIGGYLKSGRFEDALRVFNEMPERNV----ISWNAMVGGCS 268

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMI 479
             G  +   ++F  M ++    P+   + C I
Sbjct: 269 KIGHNEEAVKFFIDMLRE-GFIPNESTFPCAI 299



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 21/305 (6%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNAR----FSLARDLFDKMPQRDLVSW-NVMLTGYVRNR 66
            + T    S    N + +G+  N      F +A ++FD+MP+   V     ++T + +  
Sbjct: 80  TYQTKTHHSHDKTNFLHTGFQPNGSDSITFDVACNMFDEMPELLTVGLVTEIITSFSKQS 139

Query: 67  RLGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREV----FYQMPHKNAISWN 118
           R  DA  LF  M    +     ++  +L+   + G     +++           N    +
Sbjct: 140 RHEDAIYLFSRMLASTIRPNEFTFGTVLNTSTRLGKVGVGKQIHGCAIKTSLCSNVFVGS 199

Query: 119 GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVS 178
            L+  YV    IEEA + F+      ++S+  L+GG++K      A ++F++M  R+V+S
Sbjct: 200 ALVDLYVKLSSIEEAQKAFEDTEYPNVVSYTTLIGGYLKSGRFEDALRVFNEMPERNVIS 259

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSPHQDVF----TWTAMVSGYVQNGMLDEARTF----F 230
           WN M+ G ++ G   +A   F     +       T+   +S       L   R+F     
Sbjct: 260 WNAMVGGCSKIGHNEEAVKFFIDMLREGFIPNESTFPCAISAASNIASLGFGRSFHACAI 319

Query: 231 DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
             + + N+   N++++ Y +   M  +  +F+ +  RNV SWN +I GY  NG  A+A  
Sbjct: 320 KFLGKLNDFVGNSLISFYAKCGSMKDSLLIFDKICKRNVVSWNAVICGYAHNGRGAEAIS 379

Query: 291 LFDMM 295
           LF+ M
Sbjct: 380 LFERM 384



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 49/259 (18%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNR 66
           + A + F      + VSY  +I GYL++ RF  A  +F++MP+R+++SWN M+ G  +  
Sbjct: 212 EEAQKAFEDTEYPNVVSYTTLIGGYLKSGRFEDALRVFNEMPERNVISWNAMVGGCSKIG 271

Query: 67  RLGDARRLFDSMPQKDVVS---------------------------------------WN 87
              +A + F  M ++  +                                         N
Sbjct: 272 HNEEAVKFFIDMLREGFIPNESTFPCAISAASNIASLGFGRSFHACAIKFLGKLNDFVGN 331

Query: 88  AMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD--------- 138
           +++S YA+ G   ++  +F ++  +N +SWN ++  Y HNGR  EA  LF+         
Sbjct: 332 SLISFYAKCGSMKDSLLIFDKICKRNVVSWNAVICGYAHNGRGAEAISLFERMCSEGIKP 391

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
           +K     +   C   G V    L   +   +  ++     +  M+   A+ G  ++A+N 
Sbjct: 392 NKVSLLGLLLACNHAGLVDEGFLYFNKARIESPNLLKPEHYACMVDLLARSGRFTEAQNF 451

Query: 199 FDQSP-HQDVFTWTAMVSG 216
             + P +  +  W A++ G
Sbjct: 452 IRRMPFNPGIGFWKAILGG 470


>Medtr5g098860.1 | PPR containing plant-like protein | HC |
           chr5:43289378-43292142 | 20130731
          Length = 828

 Score =  308 bits (790), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 189/656 (28%), Positives = 337/656 (51%), Gaps = 33/656 (5%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG-YVRNRR 67
           AL VF+ M RR+ V++N +I  +++  R+  A + F  M  + ++   V     +    +
Sbjct: 174 ALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSK 233

Query: 68  LGDAR---------RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWN 118
           LGD+R         R F      DV   ++ +  ++  G  D AR VF +  +KN   WN
Sbjct: 234 LGDSRTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWN 293

Query: 119 GLLAAYVHNGRIEEACRLFDSKSDWEL-----ISWNCLMGGFVKRKMLGAARKLFDKMHV 173
            ++ AYV N    EA  +F    + E      ++   ++    + + +  A + F    +
Sbjct: 294 TMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQ-FHAFVI 352

Query: 174 RD-----VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
           +      ++  N ++  Y++   +  +  +FD+   +D  +W  ++S +VQNG  +EA  
Sbjct: 353 KSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALM 412

Query: 229 FFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS---SWNTMITGYGQ 281
              +M ++    + ++  A+++       + + ++    +  R +      + +I  Y +
Sbjct: 413 LVCEMQKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESYLIDMYAK 472

Query: 282 NGDIAQARKLFDM--MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
           +G I  A  LF+      RD  +W AII+GY Q G  E+A+ +  ++       N  T +
Sbjct: 473 SGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLA 532

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             L  C+ + ++ L +Q+HG  ++   E   +VG +L   Y KCG+I  A +VF    EK
Sbjct: 533 SILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEK 592

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
           + V++ TM+  Y +HG GK+AL +++SM   G++PD +T V +LSAC+++GL+D G + F
Sbjct: 593 NSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIF 652

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS-WGALLGASRIHG 518
            SM K + + PS +HY C+ D+LGR GR+ EA + ++ +  +      WG+LLG+ R HG
Sbjct: 653 ESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHG 712

Query: 519 NTELGEKAAEMVFK--MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           + ELG+  A+ +    M+   +G +VLLSN+YA  G W     +R +M++ G+ K TG S
Sbjct: 713 HFELGKAVAKKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCS 772

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEK 632
           WVE+   ++ F   D  HP+   IY  L+ L L M+  GY     L L+ + + ++
Sbjct: 773 WVEIAGFVNCFVSRDEKHPQSSEIYYMLDMLTLDMKYAGYKPQYSLNLNTILDSDE 828



 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 156/631 (24%), Positives = 285/631 (45%), Gaps = 82/631 (12%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVS------- 54
           R G    AL + +++PR S+V +N++I G++ N     A  L+ KM      S       
Sbjct: 61  REGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTF 120

Query: 55  ---------WNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREV 105
                       +LTG   +     +    ++ P + V  +N++L+ YA   + + A  V
Sbjct: 121 SSTLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIV--YNSLLNMYASCQH-EYALNV 177

Query: 106 FYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELI-SWNCLMGGFVKRKMLGAA 164
           F  M  +N ++WN L+ ++V   R  +A   F +  +  ++ S    +  F     LG +
Sbjct: 178 FDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDS 237

Query: 165 RKL---------FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
           R +         F   +V DV   ++ I  ++  G M  A+ +FD+  +++   W  M+ 
Sbjct: 238 RTVKMFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIV 297

Query: 216 GYVQNGMLDEARTFFDQMPQKNE-----ISYNAMVAGYVQSNKMDMARE----LFEAMPS 266
            YVQN    EA   F Q  +  E     ++  +++    Q  ++ +A +    + +++P 
Sbjct: 298 AYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPG 357

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
             +   N ++  Y +   +  + K+FD M +RD VSW  IIS + Q G  EEAL +  E+
Sbjct: 358 SLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEM 417

Query: 327 KRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG--NALLGMYFKCG 384
           ++    ++  T +  LS  +++  L +GKQ H  +++ G +   F G  + L+ MY K G
Sbjct: 418 QKQKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQ---FEGMESYLIDMYAKSG 474

Query: 385 SIGEANDVFEG--IEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGV 442
           SI  A  +FE     ++D  +WN +IAGY ++G  ++A+++ + M    V P+ +T+  +
Sbjct: 475 SIRTAELLFEQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASI 534

Query: 443 LSACSHAG---------------LIDRGTEYFYSMNKDYSV-------------TP--SS 472
           L ACS  G                +++      S+   YS              TP  +S
Sbjct: 535 LPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTPEKNS 594

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMP---FEPPAASWGALLGASRIHGNTELGEK---A 526
             YT M+   G+ G  + A  L  +M      P A ++ A+L A    G  + G +   +
Sbjct: 595 VTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFES 654

Query: 527 AEMVFKMEPHNSGMYVLLSNLYAASGRWADA 557
            E V K++P +   Y  ++++    GR  +A
Sbjct: 655 MEKVHKIKP-SIEHYCCVADMLGRVGRVVEA 684



 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 122/523 (23%), Positives = 225/523 (43%), Gaps = 83/523 (15%)

Query: 55  WNVMLTGYVRNR-----RLGD---ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVF 106
           WN  ++  +R+R     R G    A  L DS+P+   V WN+++ G+  N    +A  ++
Sbjct: 44  WNKAISTSIRSRLSKLCREGQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLY 103

Query: 107 YQMPHKNAISWNGLLAAYVHNGRIEEACRLF------------------DSKSDWELISW 148
            +M   ++ S       Y  +  ++ AC L                   ++ +    I +
Sbjct: 104 AKMRSNSSCS---TFDPYTFSSTLK-ACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVY 159

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           N L+  +   +    A  +FD M  R+VV+WNT+I  + +     QA   F    +Q V 
Sbjct: 160 NSLLNMYASCQH-EYALNVFDVMRRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVM 218

Query: 209 -TWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR 267
            +    V+ +     L ++RT               M  G+++        ++F      
Sbjct: 219 PSPVTFVNLFPALSKLGDSRTV-------------KMFYGFMRKFGDQYVSDVFVV---- 261

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
                ++ I  +   G +  AR +FD    ++   W  +I  Y Q     EA+++FI+  
Sbjct: 262 -----SSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQAL 316

Query: 328 RDGESL-NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSI 386
              E + +  T    L+  + +  ++L +Q H  V+K+   +   + NA++ MY +C  +
Sbjct: 317 ESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHV 376

Query: 387 GEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
             +  VF+ + E+D VSWNT+I+ + ++GF ++ALM+   M+      D +T   +LSA 
Sbjct: 377 DTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAA 436

Query: 447 S-----------HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLM 495
           S           HA LI RG + F  M             + +ID+  ++G +  A+ L 
Sbjct: 437 SNLRNLYVGKQTHAYLIRRGIQ-FEGME------------SYLIDMYAKSGSIRTAELLF 483

Query: 496 -RNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
            +N   +   A+W A++     +G   L EKA  ++ +M   N
Sbjct: 484 EQNCSSDRDQATWNAIIAGYTQNG---LNEKAILLLKQMLVQN 523



 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 208/450 (46%), Gaps = 47/450 (10%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-----DLVSWNVM 58
           G  D A  VF+    +++  +N MI  Y++N     A D+F +  +      D V+   +
Sbjct: 272 GCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCPVEAIDVFIQALESEEGVCDDVTLLSV 331

Query: 59  LTGYVRNRRLGDARR----LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           LT   + +++  A +    +  S+P   ++  NA++  Y++  + D + +VF +M  ++A
Sbjct: 332 LTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLERDA 391

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD----- 169
           +SWN +++A+V NG  EEA  L       E+     L+       +L AA  L +     
Sbjct: 392 VSWNTIISAFVQNGFDEEALMLV-----CEMQKQKFLIDSVTATALLSAASNLRNLYVGK 446

Query: 170 KMH---VRDVVSWNTM----ISGYAQDGDMSQAKNLFDQ--SPHQDVFTWTAMVSGYVQN 220
           + H   +R  + +  M    I  YA+ G +  A+ LF+Q  S  +D  TW A+++GY QN
Sbjct: 447 QTHAYLIRRGIQFEGMESYLIDMYAKSGSIRTAELLFEQNCSSDRDQATWNAIIAGYTQN 506

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQS----NKMDMAREL----FEAMPSRNVSSW 272
           G+ ++A     QM  +N I     +A  + +      M +AR+L          +NV   
Sbjct: 507 GLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVG 566

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
            ++   Y + G I+ A  +F   P+++ V++  ++  Y Q G  + AL ++  + R G  
Sbjct: 567 TSLTDTYSKCGAISYAENVFLRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIR 626

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQV-----VKTGYETGCFVGNALLGMYFKCGSIG 387
            +  TF   LS C     ++ G QI   +     +K   E  C V + +LG   + G + 
Sbjct: 627 PDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKIKPSIEHYCCVAD-MLG---RVGRVV 682

Query: 388 EANDVFEGIEE--KDVVSWNTMIAGYARHG 415
           EA +  +G+ E    +  W +++     HG
Sbjct: 683 EAYEFVKGLGEDANTMEIWGSLLGSCRNHG 712


>Medtr1g073160.1 | PPR containing plant-like protein | HC |
           chr1:32444344-32441927 | 20130731
          Length = 627

 Score =  306 bits (783), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 296/550 (53%), Gaps = 30/550 (5%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           ++ +FDS+  K+V  WN++++GY +N   D A  +F QM          L      +G I
Sbjct: 80  SKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLPDDYTLATISKVSGEI 139

Query: 131 EEAC--RLFDSKS-----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
           ++    +L   KS       +++  N +M  +++ +  G A K+FD+M  R+V S+N +I
Sbjct: 140 QDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVII 199

Query: 184 SGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEI 239
           SG A  G++       D S + D++ +   +     N    +A T    +P       + 
Sbjct: 200 SGCAALGNL-------DYSLYADLWNFFRRMQCQGYNA---DAFTVASLLPMCCDSDGKF 249

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD 299
            +   +  Y+  N +D+           +V   +++I  Y ++  +  +R++FD M  R+
Sbjct: 250 DHGRELHCYLVKNGLDLKM-------CSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRN 302

Query: 300 CVSWAAIISGYAQTGHYEEALNMFIEIKR-DGESLNRSTFSCALSTCADIAALELGKQIH 358
              W A+I+GY Q G  E AL +F E++R D    NR +    L  C  +  L  GKQ+H
Sbjct: 303 IYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVH 362

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE-GIEEKDVVSWNTMIAGYARHGFG 417
              +K  +     + NAL+ MY KCGS+  A  VF+ G   KD ++W+++I+ Y  HG G
Sbjct: 363 AFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKG 422

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC 477
           ++AL  +  M   G+KPD IT+VGVLSAC  +GL+D G   + S+  +Y + PS +   C
Sbjct: 423 QEALTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGC 482

Query: 478 MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
           ++DLLGR+G+L++A D +R MP  P  + WG+LL AS IHGN+   + A   + ++EP N
Sbjct: 483 VVDLLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPEN 542

Query: 538 SGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEK 597
              Y+ LSN YA+S RW +   +RS M++ G++KV G SW+ + +K H FTV D  HP  
Sbjct: 543 PSNYISLSNTYASSRRWDEITEVRSMMKERGLRKVPGISWITISDKNHFFTVADKVHPSS 602

Query: 598 DRIYAFLEEL 607
             IY  L++L
Sbjct: 603 SSIYEMLDDL 612



 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 178/391 (45%), Gaps = 72/391 (18%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQ---------------------- 49
           VF+++  ++   +N++I+GY++N +F  A  LF +M +                      
Sbjct: 83  VFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQMGRCLLPDDYTLATISKVSGEIQDL 142

Query: 50  ----------------RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGY 93
                            D+V  N +++ Y+R R  GDA ++FD MPQ++V S+N ++SG 
Sbjct: 143 VLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGC 202

Query: 94  AQNGYADEA---------REVFYQMPHKNAISWNGLLA------AYVHNGRIEEACRLFD 138
           A  G  D +         R +  Q  + +A +   LL           +GR E  C L  
Sbjct: 203 AALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGR-ELHCYLVK 261

Query: 139 SKSDWELIS----WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
           +  D ++ S     + L+  + +   L  +R++FD+M  R++  W  MI+GY Q+G    
Sbjct: 262 NGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEG 321

Query: 195 AKNLFDQSPHQDVF--TWTAMVSGYVQNGML------DEARTFFDQMPQKNEISY-NAMV 245
           A  LF +   +D       ++VS     G+L       +   F  +M   + IS  NA++
Sbjct: 322 ALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALI 381

Query: 246 AGYVQSNKMDMARELFE-AMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DC 300
             Y +   +D AR +F+    S++  +W+++I+ YG +G   +A   +  M Q+    D 
Sbjct: 382 DMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDM 441

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
           ++   ++S   ++G  +E ++++  +  + E
Sbjct: 442 ITVVGVLSACCRSGLVDEGISIYNSLTTEYE 472



 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 116/244 (47%), Gaps = 14/244 (5%)

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
           S+N      +I+ Y   GD   ++ +FD +  ++   W ++I+GY +   ++ A+ +F  
Sbjct: 58  SQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLF-- 115

Query: 326 IKRDGESLNRSTFSCAL--STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
            ++ G  L    ++ A       +I  L LGK IHG+ ++ G+ +   VGN+++ MY +C
Sbjct: 116 -RQMGRCLLPDDYTLATISKVSGEIQDLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRC 174

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMV-----FESMKTIGVKPDEIT 438
              G+A  VF+ + +++V S+N +I+G A  G    +L       F  M+  G   D  T
Sbjct: 175 REFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFT 234

Query: 439 MVGVLSACSHA-GLIDRGTE---YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDL 494
           +  +L  C  + G  D G E   Y      D  +       + +ID+  R+ +L  ++ +
Sbjct: 235 VASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRV 294

Query: 495 MRNM 498
              M
Sbjct: 295 FDQM 298



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 138/318 (43%), Gaps = 56/318 (17%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           +++I  Y R+ +  L+R +FD+M  R++  W  M+ GYV+N     A  LF  M +KD +
Sbjct: 276 SSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRI 335

Query: 85  SWN--AMLSGYAQNGY------ADEAREVFYQMPHKNAISW-NGLLAAYVHNGRIEEACR 135
             N  +++S     G         +      +M   + IS  N L+  Y   G ++ A R
Sbjct: 336 RPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARR 395

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +FD+ S                              + +D ++W+++IS Y   G   +A
Sbjct: 396 VFDNGS------------------------------YSKDAITWSSIISAYGLHGKGQEA 425

Query: 196 KN----LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV-- 249
                 +  Q    D+ T   ++S   ++G++DE  + ++ +  + E+  +  + G V  
Sbjct: 426 LTTYYEMLQQGIKPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVD 485

Query: 250 ---QSNKMDMARELFEAMP-SRNVSSWNTMIT-----GYGQNGDIAQARKLFDMMPQRDC 300
              +S ++D A +    MP     S W +++T     G     D+A  R L ++ P+   
Sbjct: 486 LLGRSGQLDQALDFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAY-RCLLELEPENPS 544

Query: 301 VSWAAIISGYAQTGHYEE 318
            ++ ++ + YA +  ++E
Sbjct: 545 -NYISLSNTYASSRRWDE 561



 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 51/320 (15%)

Query: 11  RVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN-------VMLTGYV 63
           RVF+ M  R+   + AMI+GY++N     A  LF +M ++D +  N       +   G +
Sbjct: 293 RVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLL 352

Query: 64  RNRRLGDARRLFD-SMPQKDVVSW-NAMLSGYAQNGYADEAREVFYQMPH-KNAISWNGL 120
                G     F   M   D +S  NA++  YA+ G  D AR VF    + K+AI+W+ +
Sbjct: 353 VGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSI 412

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           ++AY  +G+ +EA   +                     +ML    K        D+++  
Sbjct: 413 ISAYGLHGKGQEALTTY--------------------YEMLQQGIK-------PDMITVV 445

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV-----QNGMLDEARTFFDQMPQ 235
            ++S   + G + +  ++++    +     +  + G V     ++G LD+A  F  +MP 
Sbjct: 446 GVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPI 505

Query: 236 KNEISY--NAMVAGYVQSNKM--DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
               S   + + A  +  N M  D+A      +   N S++ ++   Y  +    +  ++
Sbjct: 506 IPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEV 565

Query: 292 FDMMPQRDC-----VSWAAI 306
             MM +R       +SW  I
Sbjct: 566 RSMMKERGLRKVPGISWITI 585


>Medtr3g098230.1 | PPR containing plant-like protein | HC |
           chr3:44828973-44831769 | 20130731
          Length = 873

 Score =  304 bits (779), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 192/605 (31%), Positives = 310/605 (51%), Gaps = 42/605 (6%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDS-----MP 79
           NA++S YL+  R   A  LF  M  RDLVSWN ++ GY  N     +  +F +     M 
Sbjct: 291 NALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEML 350

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVF-YQMPH----KNAISWNGLLAAYVHNGRIEEAC 134
             D V+  ++L   AQ       ++V  Y + H    ++  + N L++ Y   G IEEA 
Sbjct: 351 LLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAY 410

Query: 135 RLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD---KMHVR-DVVSWNTMISGYAQDG 190
             F   S  +LISWN ++  F +++       L     K+ +R D V+  T+I   A   
Sbjct: 411 HTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLL 470

Query: 191 DMSQAKNLFDQSPHQDVFTWTAMVSGY-VQNGMLDEARTFFDQMPQKNEISYNAMVAGYV 249
            + + K                 + GY +++G L  A       P       NA++  Y 
Sbjct: 471 RVKKVKE----------------IHGYSIRSGSLLCATA-----PTVG----NAILDAYS 505

Query: 250 QSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           +   ++ A ++F+ +   RN+ + N++I+GY   G    A  +F  M + D  +W  ++ 
Sbjct: 506 KCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVR 565

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYET 368
            YA+    E+AL +F++++  G   +  T    +  C  +A++ L +Q HG ++++ +E 
Sbjct: 566 VYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSFED 625

Query: 369 GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMK 428
               G  LL  Y KCG IG A  +F+   +KD+V +  MI GYA HG  ++AL  F  M 
Sbjct: 626 LHLKGT-LLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFSHML 684

Query: 429 TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
            +G+KPD +    +LSACSHAG I  G + F S+ K + + P+ + + C++DLL R G +
Sbjct: 685 NMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLLARGGHV 744

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLY 548
            EA   +  +P E  A  WG LLGA + +   ELG   A+ +FK+E ++ G Y++LSNLY
Sbjct: 745 SEAYSFVTKIPIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEANDIGNYIVLSNLY 804

Query: 549 AASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELD 608
           AA  RW     +R  MR+  ++K  G SW+EV+   + F VGDC HP+++ IY+ L  LD
Sbjct: 805 AADDRWDGVMEVRKMMRNKDLKKPAGCSWIEVERTNNIFVVGDCSHPQRNLIYSTLCTLD 864

Query: 609 LKMRR 613
            +++ 
Sbjct: 865 QQVKE 869



 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 215/467 (46%), Gaps = 46/467 (9%)

Query: 53  VSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYAD-EAREVFYQMPH 111
           V+   +L  Y +   L D  +LFD   + D V WN +LSGY+++G  D +  +VF  M  
Sbjct: 79  VTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHS 138

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
              +     + + V    +   C    + +  + +    +  GF                
Sbjct: 139 SGEV-----MPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFE--------------- 178

Query: 172 HVRDVVSWNTMISGYAQDGDMS-QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
              D  + N ++S YA+ G ++  A  +FD   H+DV +W AM++G  +NG+L EA + F
Sbjct: 179 --MDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLF 236

Query: 231 DQMPQKNEISYN--------AMVAGYVQSNKMDMARELFEAMP-----SRNVSSWNTMIT 277
             M  K  +  N         + A + ++      R++   +      S +VS  N +++
Sbjct: 237 SLM-MKGSVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLS 295

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE-IKRDGESLNRS 336
            Y + G   +A  LF  M  RD VSW  II+GYA  G + ++L++F   +  +   L+  
Sbjct: 296 FYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSV 355

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGY---ETGCFVGNALLGMYFKCGSIGEANDVF 393
           T    L  CA +  L+ GKQ+H  +++  +   +T    GNAL+  Y KCG I EA   F
Sbjct: 356 TMVSILPACAQLDNLQAGKQVHAYILRHPFLFEDTS--AGNALVSFYAKCGYIEEAYHTF 413

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
             I  KD++SWN+++  +       + L +   M  + ++PD +T++ ++  C+    + 
Sbjct: 414 SMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVK 473

Query: 454 RGTE-YFYSMNKDYSVTPSSKHY-TCMIDLLGRAGRLEEAQDLMRNM 498
           +  E + YS+     +  ++      ++D   + G +E A  + +N+
Sbjct: 474 KVKEIHGYSIRSGSLLCATAPTVGNAILDAYSKCGNIEYANKMFQNL 520



 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 207/458 (45%), Gaps = 89/458 (19%)

Query: 49  QRDLVSWNVMLTGYVRNRRLG-DARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFY 107
           + D  + N +++ Y +   +  DA  +FDS+  KDVVSWNAM++G A+NG   EA  +F 
Sbjct: 178 EMDTFAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFS 237

Query: 108 QMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKS-------------DWELIS-----WN 149
            M  K ++  N     Y     I   C  FD                 W  +S      N
Sbjct: 238 LM-MKGSVKPN-----YATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCN 291

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFT 209
            L+  ++K      A  LF  M  RD+VSWNT+I+GYA +G+  ++ ++F      ++  
Sbjct: 292 ALLSFYLKVGRTKEAESLFWAMDARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEM-- 349

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMP---QKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
                       +L ++ T    +P   Q + +     V  Y+  +       LFE    
Sbjct: 350 ------------LLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPF-----LFE---- 388

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMF-IE 325
            + S+ N +++ Y + G I +A   F M+ ++D +SW +I+  + +  H+   L++  + 
Sbjct: 389 -DTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVM 447

Query: 326 IKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG---YETGCFVGNALLGMYFK 382
           +K D    +  T    +  CA +  ++  K+IHG  +++G     T   VGNA+L  Y K
Sbjct: 448 LKLDIRP-DSVTILTIIHFCASLLRVKKVKEIHGYSIRSGSLLCATAPTVGNAILDAYSK 506

Query: 383 CGSIG--------------------------------EANDVFEGIEEKDVVSWNTMIAG 410
           CG+I                                 +AN +F G+ E D+ +WN M+  
Sbjct: 507 CGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVRV 566

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           YA +   +QAL +F  ++T G+KPD +T++ ++  C+ 
Sbjct: 567 YAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQ 604



 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 31/338 (9%)

Query: 204 HQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY---NAMVAGYVQSNKMDMAREL 260
            ++  TW + +     +   +EA +FF     K+  ++   + ++A  ++S    +A  L
Sbjct: 3   QRNFMTWASTIRSLCVDSRHNEALSFFHHC-LKDSAAFKPDHEVLAAILKSCSALLASNL 61

Query: 261 FEAMPSRNVS--------SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
            + + S  V         +   ++  Y + G +    KLFD   + D V W  ++SGY++
Sbjct: 62  GKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSR 121

Query: 313 TGHYE-EALNMFIEIKRDGESLNRS-TFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
           +G  + + + +F  +   GE +  S T +  L  CA    L  GK +HG V+K+G+E   
Sbjct: 122 SGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDT 181

Query: 371 FVGNALLGMYFKCGSIG-EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT 429
           F GNAL+ MY KCG +  +A  VF+ I  KDVVSWN MIAG A +G  K+A  +F  M  
Sbjct: 182 FAGNALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMK 241

Query: 430 IGVKPDEITMVGVLSACSH--AGLIDRGTEYFYS-------MNKDYSVTPSSKHYTCMID 480
             VKP+  T+  +L  C+     +  R     +S       ++ D SV  +      ++ 
Sbjct: 242 GSVKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNA------LLS 295

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
              + GR +EA+ L   M       SW  ++    ++G
Sbjct: 296 FYLKVGRTKEAESLFWAMDAR-DLVSWNTIIAGYALNG 332



 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 170/358 (47%), Gaps = 17/358 (4%)

Query: 172 HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD-EARTFF 230
           HV   V+   +++ YA+ G +     LFDQ    D   W  ++SGY ++G  D +    F
Sbjct: 74  HVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVF 133

Query: 231 DQMPQKNEISYNAMVAGYV-----QSNKMDMARE----LFEAMPSRNVSSWNTMITGYGQ 281
             M    E+  +++    V     +S  ++  +     + ++    +  + N +++ Y +
Sbjct: 134 RAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAK 193

Query: 282 NGDIA-QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC 340
            G +A  A  +FD +  +D VSW A+I+G A+ G  +EA ++F  + +     N +T + 
Sbjct: 194 CGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVAN 253

Query: 341 ALSTCADI---AALELGKQIHGQVVK-TGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
            L  CA      A   G+QIH  V++         V NALL  Y K G   EA  +F  +
Sbjct: 254 ILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAM 313

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEITMVGVLSACSHAGLIDRG 455
           + +D+VSWNT+IAGYA +G   ++L VF ++ ++  +  D +TMV +L AC+    +  G
Sbjct: 314 DARDLVSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAG 373

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            +    + +   +   +     ++    + G +EEA     +M       SW ++L A
Sbjct: 374 KQVHAYILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTF-SMISRKDLISWNSILDA 430



 Score = 90.1 bits (222), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALE 352
           M QR+ ++WA+ I        + EAL+ F    +D  +   +    +  L +C+ + A  
Sbjct: 1   MLQRNFMTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASN 60

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           LGK +H  VVK G+ +      ALL MY KCG + + + +F+     D V WN +++GY+
Sbjct: 61  LGKCLHSYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYS 120

Query: 413 RHGFGKQALM-VFESMKTIG-VKPDEITMVGVLSACSHAGLIDRG 455
           R G     +M VF +M + G V P  +T+  VL  C+ +G ++ G
Sbjct: 121 RSGKNDADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGG 165



 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 17/250 (6%)

Query: 2   RNGHCDSALRVF-NTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           + G+ + A ++F N   +R+ V+ N++ISGY+       A  +F  M + DL +WN+M+ 
Sbjct: 506 KCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVR 565

Query: 61  GYVRNRRLGDARRLFDSMPQK----DVVSWNAMLSGYAQNGYADEAREV---FYQMPHKN 113
            Y  N     A  LF  +  +    DVV+  +++    Q       R+      +   ++
Sbjct: 566 VYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSFED 625

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH- 172
                 LL AY   G I  A ++F S  D +L+ +  ++GG+    M   A + F  M  
Sbjct: 626 LHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGYAMHGMSEKALETFSHMLN 685

Query: 173 ---VRDVVSWNTMISGYAQDGDMSQAKNLFD-----QSPHQDVFTWTAMVSGYVQNGMLD 224
                D V + +++S  +  G +++   +FD           +  +  +V    + G + 
Sbjct: 686 MGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPTIEQFACVVDLLARGGHVS 745

Query: 225 EARTFFDQMP 234
           EA +F  ++P
Sbjct: 746 EAYSFVTKIP 755


>Medtr8g066670.1 | chlororespiratory reduction protein, putative |
           LC | chr8:27704772-27714873 | 20130731
          Length = 1504

 Score =  303 bits (775), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 306/606 (50%), Gaps = 63/606 (10%)

Query: 68  LGDARRLFDSMP--QKDVVSWNAMLSGYAQNGYADEAREVFYQM-----PHKNAISWNGL 120
           L DA ++FD MP  +++ V WN+M+ GY QNG   EA  +F +M        + +S +G 
Sbjct: 260 LEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGF 319

Query: 121 LAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV-RD 175
            +A  +   +EE       +     +   +  + +M  + K  ++     +F  M V +D
Sbjct: 320 FSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKD 379

Query: 176 VVSWNTMISGYAQDG------------------------------------DMSQAKNLF 199
            V+WN MIS Y Q G                                    D+   K L 
Sbjct: 380 EVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLH 439

Query: 200 DQSPHQDVFTWTAMVSG----YVQNGMLDEARTFFDQMPQKNEIS-YNAMVAGYVQSNKM 254
                 + ++  A++SG    Y + G++D AR  F    +K +I  +N M+A   +    
Sbjct: 440 GFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLS 499

Query: 255 DMARELF-----EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP----QRDCVSWAA 305
             A +LF     E++P  NV SWN++I G+ +NG + +A+ +F  M       + ++W  
Sbjct: 500 GEALKLFFQMQMESVPP-NVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTT 558

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           +ISG AQ G   EA  +F +++  G   N  + + ALS C ++A L  G+ IHG V++  
Sbjct: 559 MISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNF 618

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
                 +  +++ MY KCG++ +A  VF     K++  +N MI+ YA HG   +AL +F+
Sbjct: 619 MSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQ 678

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA 485
            +   G+ PD IT   VLSACSH  L+  G E F  M  +  + PS KHY C++ LL   
Sbjct: 679 ELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTND 738

Query: 486 GRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLS 545
           G+L+EA  ++  MP  P A   G+LL A   +  TEL    A+ + K+EP+N G YV LS
Sbjct: 739 GQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALS 798

Query: 546 NLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLE 605
           N+YAA G+W +  N+R  M++ G++K+ G SW+EV  +++ F   D  HPEK+ IY  L+
Sbjct: 799 NVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEVGQELNVFIASDKSHPEKEEIYKILD 858

Query: 606 ELDLKM 611
            L  +M
Sbjct: 859 LLGFEM 864



 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 181/389 (46%), Gaps = 40/389 (10%)

Query: 198 LFDQSPHQDVFTWTAM-----VSGYVQNGMLDEARTFFDQMPQKNEIS---YNAMVAGYV 249
           + + +P  + F  T       +S   +N  L EA +   Q+PQ   I    Y  ++ G V
Sbjct: 55  ILNHTPKHNFFPTTNTTLHHQISFLCKNLKLQEAISTLSQLPQHTPIGPDIYGELLQGCV 114

Query: 250 QSNKMDMARELFEAMPSRNVSSWNT-------MITGYGQNGDIAQARKLF-DMMPQRDCV 301
            +  + +  ++   +  +  SS++T       ++  Y +      A   F +++  ++  
Sbjct: 115 YARDLSLGLQIHAHLIKKG-SSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLF 173

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQV 361
           S+AAI+   A+ G Y+EAL  ++E+   G   +       L  C  +  +  G+ IHG V
Sbjct: 174 SYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFV 233

Query: 362 VKTGYE-TGC-FVGNALLGMYFKCGSIGEANDVFEGIEEK---DVVSWNTMIAGYARHGF 416
           VK G E  GC +V  +L+ MY KCG + +A  VF+ +  +   DVV WN+MI GY ++G 
Sbjct: 234 VKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVV-WNSMIVGYVQNGM 292

Query: 417 GKQALMVFESMK-TIGVKPDEITMVGVLSACSHAGLIDRGTE-----YFYSMNKDYSVTP 470
             +A+ +FE M+   GV+P E+++ G  SAC++   ++ G +            +Y +  
Sbjct: 293 NVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGS 352

Query: 471 SSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMV 530
           S      +++   + G +EE + + R+M       +W  ++ +    G   + EKA EM 
Sbjct: 353 S------IMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFG---MFEKALEMC 403

Query: 531 FKMEPHNSGMY--VLLSNLYAASGRWADA 557
             M    +  +  V LS+L A +    D 
Sbjct: 404 HWMREEENLRFDCVTLSSLLALAADTRDV 432



 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 146/359 (40%), Gaps = 66/359 (18%)

Query: 4   GHCDSALRVFNTMPRRSS----VSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSW 55
           G    AL++F  M   S     VS+N++I G+ RN +   A+D+F +M       +L++W
Sbjct: 497 GLSGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITW 556

Query: 56  NVMLTGYVRNRRLGDARRLFDSMP----QKDVVSWNAMLSGYAQNGYADEAREVF-YQMP 110
             M++G  +N    +A R+F  M     + + +S  + LS        +  R +  Y M 
Sbjct: 557 TTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVM- 615

Query: 111 HKNAISWN-----GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAAR 165
            +N +S++      ++  Y   G +++A  +F   S  EL  +                 
Sbjct: 616 -RNFMSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVY----------------- 657

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNG 221
                         N MIS YA  G  ++A  LF +   Q    D  T+T+++S      
Sbjct: 658 --------------NAMISAYASHGKSAEALALFQELVKQGIMPDHITFTSVLSACSHGR 703

Query: 222 MLDEARTFFDQMP-----QKNEISYNAMVAGYVQSNKMDMARELFEAMPS-RNVSSWNTM 275
           +L E    F  M      + +E  Y  +V       ++D A  +   MPS  +     ++
Sbjct: 704 LLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALRIILTMPSPPDAHILGSL 763

Query: 276 ITGYGQNGDIAQ----ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +   GQN +       A+ L  + P     ++ A+ + YA  G ++E  N+   +K  G
Sbjct: 764 LAACGQNHETELANYIAKWLLKVEPNNPG-NYVALSNVYAALGKWDEVSNIRGFMKEKG 821


>Medtr8g035960.1 | PPR containing plant-like protein | HC |
           chr8:13156718-13159093 | 20130731
          Length = 791

 Score =  302 bits (773), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 302/573 (52%), Gaps = 47/573 (8%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNG--YADEAREVFYQMPHK- 112
           N ++T Y R   L +A R+F+ M  +D+VSWNAMLSGYAQ G  Y  EA  +F  M  + 
Sbjct: 226 NALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREG 285

Query: 113 ---NAISWNGLLAA--YVHNGRIEEACRLFDSKSDW--ELISWNCLMGGFVKRKMLGAAR 165
              + +S  G ++A  Y  N    +       K  +   +   N L+  + K K+L  A+
Sbjct: 286 MLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAK 345

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
            +F  M  R+VVSW T+IS      D     +LF+      V+       G +       
Sbjct: 346 AVFQDMSARNVVSWTTLISI-----DEENVVSLFNAMRVDGVYPNDVTFIGLLH------ 394

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDI 285
                  +  +N +    MV G    + +            +NVS  N++IT Y +   I
Sbjct: 395 ------AITIRNMVKEGLMVHGLCLKSCLS---------SEQNVS--NSLITMYAKFESI 437

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
            +++K+F+ +  +  +SW A+ISGYAQ G  +EA   F+   ++ +  N+ TF   L+  
Sbjct: 438 QESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKP-NQYTFGSVLNAI 496

Query: 346 A---DIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVV 402
           A   DI+ L+ G++ H  ++K G  T  FV  ALL MY K G+I E+  VF    EK   
Sbjct: 497 AAAEDIS-LKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQF 555

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           SW  MI+ YARHG  +  + +++ ++  G   D IT + VL+AC   G++D G   F SM
Sbjct: 556 SWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSM 615

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTEL 522
            K +S+ P+ +HY+ M+D+LGR GRL+EA++LM  +P  P  +   +LLG+ ++HGN E+
Sbjct: 616 VKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEM 675

Query: 523 GEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQN 582
            E+  + + +M+P +SG YVL++NLYA  G W     +R  MR  GV+K  G+SWV+V N
Sbjct: 676 AERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVAN 735

Query: 583 ----KIHKFTVGDCFHPEKDRIYAFLEELDLKM 611
                +H F+ GD  HPE + I    E L L+M
Sbjct: 736 VDSLHLHGFSSGDKSHPESETIDRMAEFLGLQM 768



 Score =  132 bits (333), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 239/554 (43%), Gaps = 95/554 (17%)

Query: 42  DLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNG 97
           +LF+K+PQ +  S N  +  ++       A  +F +  Q    +++      LS  A  G
Sbjct: 39  NLFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACRG 98

Query: 98  YADEAREVFYQMPHKNAIS----WNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMG 153
                 ++   +     +S     N L+  Y   GR E A  +F+  S  +++SWN ++ 
Sbjct: 99  EFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILS 158

Query: 154 GFVKR-KMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM-SQAKNLFDQSPHQ------ 205
           GF K    L  A  +     V D V++ T +S +  D D       LF    H       
Sbjct: 159 GFEKSVDALNFACFMHLNGVVFDPVTYTTALS-FCWDRDYWDDHGFLFGLQLHSLVVKCG 217

Query: 206 ---DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKM-------- 254
              +VF   A+V+ Y + G LDEA   F++M  ++ +S+NAM++GY Q  +         
Sbjct: 218 FGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLL 277

Query: 255 --DMARE--------LFEAMPS-----------------------RNVSSWNTMITGYGQ 281
             +M RE        L  A+ +                        +V+  N +I+ Y +
Sbjct: 278 FGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSK 337

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
              +  A+ +F  M  R+ VSW  +IS        E  +++F  ++ DG   N  TF   
Sbjct: 338 CKVLRDAKAVFQDMSARNVVSWTTLIS-----IDEENVVSLFNAMRVDGVYPNDVTFIGL 392

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L        ++ G  +HG  +K+   +   V N+L+ MY K  SI E+  +FE +  +  
Sbjct: 393 LHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGT 452

Query: 402 VSWNTMIAGYARHGFGKQALMVFES-MKTIGVKPDEITMVGVLSACS------------- 447
           +SWN +I+GYA++G  K+A + F S +K I  KP++ T   VL+A +             
Sbjct: 453 ISWNALISGYAQNGLCKEAFLTFLSAIKEI--KPNQYTFGSVLNAIAAAEDISLKHGQRC 510

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H+ LI  G      +N D  V  +      ++D+ G+ G + E+Q +    P E    SW
Sbjct: 511 HSHLIKLG------LNTDPFVAGA------LLDMYGKRGNINESQRVFNETP-EKTQFSW 557

Query: 508 GALLGASRIHGNTE 521
             ++ A   HG+ E
Sbjct: 558 TGMISAYARHGDYE 571



 Score =  129 bits (325), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 187/393 (47%), Gaps = 40/393 (10%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNAR-FSL-ARDLFDKMPQRDLVSWNVML 59
           R G  D A RVFN M  R  VS+NAM+SGY +    + L A  LF  M +  ++  +V L
Sbjct: 234 RWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSL 293

Query: 60  T------GYVRNRRLGDARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQ 108
           T      GY +N   G   +    + QK      V   N ++S Y++     +A+ VF  
Sbjct: 294 TGAISACGYTKNLEFG---KQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQD 350

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDS-------KSDWELISW--NCLMGGFVKRK 159
           M  +N +SW  L++        E    LF++        +D   I       +   VK  
Sbjct: 351 MSARNVVSWTTLISI-----DEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEG 405

Query: 160 MLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQ 219
           ++     L   +     VS N++I+ YA+   + ++K +F++  +Q   +W A++SGY Q
Sbjct: 406 LMVHGLCLKSCLSSEQNVS-NSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQ 464

Query: 220 NGMLDEA-RTFFDQMPQ--KNEISYNAMVAGYVQSNKMDMAR------ELFEAMPSRNVS 270
           NG+  EA  TF   + +   N+ ++ +++     +  + +         L +   + +  
Sbjct: 465 NGLCKEAFLTFLSAIKEIKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPF 524

Query: 271 SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
               ++  YG+ G+I +++++F+  P++   SW  +IS YA+ G YE  ++++ EI+R+G
Sbjct: 525 VAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREG 584

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVK 363
            +L+  TF   L+ C     +++G  I   +VK
Sbjct: 585 SNLDSITFLSVLAACCRKGMVDVGHIIFDSMVK 617



 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 10/148 (6%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----DLVSWNV 57
           + G+ + + RVFN  P ++  S+  MIS Y R+  +     L+ ++ +     D +++  
Sbjct: 535 KRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLS 594

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVS-----WNAMLSGYAQNGYADEAREVFYQMPHK 112
           +L    R   +     +FDSM +K  +      ++ M+    + G  DEA E+ +Q+P  
Sbjct: 595 VLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQIPGG 654

Query: 113 NAIS-WNGLLAAYVHNGRIEEACRLFDS 139
             +S    LL +   +G +E A R+ DS
Sbjct: 655 PGLSVLQSLLGSCKLHGNVEMAERVVDS 682


>Medtr5g094220.1 | PPR containing plant-like protein | HC |
           chr5:41149037-41146758 | 20130731
          Length = 759

 Score =  301 bits (772), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 325/627 (51%), Gaps = 75/627 (11%)

Query: 17  PRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRN----------- 65
           P  S+V  ++ +S Y R    + A  +FD++P RD+V+W  ++ GYV+N           
Sbjct: 143 PENSAVG-SSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECIS 201

Query: 66  --RRLGD------ARRL----FDSMPQKDVVS-------------------WNAMLSGYA 94
              R+GD      AR L           D+VS                    +++LS Y 
Sbjct: 202 EMYRVGDDSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYC 261

Query: 95  QNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELIS------- 147
           + G   EA + F ++ +K+ +SW  ++  Y   G + +  R F     WE++        
Sbjct: 262 KCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFF-----WEMLENQVCPDG 316

Query: 148 --WNCLMGGFVKRKMLGAARKLFDKMHVR-----DVVSWNTMISGYAQDGDMSQAKNLFD 200
               C++ GF     +    K F  + +R     D +  N+++S Y + G +S A+ LF 
Sbjct: 317 MVIGCILSGFGNSVDVYGG-KAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQ 375

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDM 256
           +S    +  W  M+ GY + G   +    F +M     +   +   + +A   Q  ++++
Sbjct: 376 RS-QGSIEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINL 434

Query: 257 AREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQ 312
            R +     +      +S  N++I  YG+   +  + ++F+   +RD + W A+IS +  
Sbjct: 435 GRSIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNR-SERDVILWNALISAHIH 493

Query: 313 TGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFV 372
             HYEEA+++F  +  + ++ N +T    LS C+ +A LE G+++H  + + G++    +
Sbjct: 494 VKHYEEAISLFDIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPL 553

Query: 373 GNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV 432
           G AL+ MY KCG + ++ +VF+ + EKDV+ WN MI+GY  +G+ + A+ +F  M+   V
Sbjct: 554 GTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNV 613

Query: 433 KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQ 492
           KP+EIT + +LSAC+HAGL++ G   F  M + YSV P+ KHYTCM+DLLGR+  LEEA+
Sbjct: 614 KPNEITFLSLLSACAHAGLVEEGKNVFAKM-QSYSVKPNLKHYTCMVDLLGRSCNLEEAE 672

Query: 493 DLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASG 552
           +L+ +MP  P    WGALL A + H   E+G +  +     EP N G Y++++N+Y++ G
Sbjct: 673 ELVLSMPIPPDGGVWGALLSACKTHNQIEMGIRIGKNAIDSEPENDGYYIMVANMYSSIG 732

Query: 553 RWADAGNMRSRMRD-VGVQKVTGYSWV 578
           RW +A N+R  M+D   + K  G+S V
Sbjct: 733 RWDEAENVRRTMKDRCSMGKKAGWSMV 759



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/495 (22%), Positives = 212/495 (42%), Gaps = 50/495 (10%)

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAAYVHNGR 129
           LF S+P KD   WN+ L          +    +  M  +N +    ++  + ++Y H   
Sbjct: 66  LFHSLPFKDTFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMM 125

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQD 189
           I         +S   L +  C +G F +   +G+                 + +S Y++ 
Sbjct: 126 I---------RSGMNLHALACKVGFFPENSAVGS-----------------SFVSLYSRC 159

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYN----AMV 245
            +M+ A  +FD+ P +DV  WTA+V GYVQNG  +       +M +  + S       + 
Sbjct: 160 DEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLE 219

Query: 246 AGYVQSNKMD--MARELFEAMPSRN-----VSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
            G++    +   ++      +  +N     +   +++++ Y + G   +A + F  +  +
Sbjct: 220 GGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINK 279

Query: 299 DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
           D +SW ++I  YA+ G   + +  F E+  +    +     C LS   +   +  GK  H
Sbjct: 280 DLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFH 339

Query: 359 GQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGK 418
           G +++  Y     V N+LL MY K G +  A  +F+   +  +  WN MI GY R G   
Sbjct: 340 GLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSIEYWNFMIVGYGRIGKNV 398

Query: 419 QALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCM 478
           + + +F  M+ +G++ + + +V  +++C   G I+ G     ++ K + V  +      +
Sbjct: 399 KCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGF-VDETISVTNSL 457

Query: 479 IDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM--VFKMEPH 536
           I++ G+  ++  +  +      E     W AL+ A   H + +  E+A  +  +  ME  
Sbjct: 458 IEMYGKCDKMNVSWRIFNRS--ERDVILWNALISA---HIHVKHYEEAISLFDIMIMEDQ 512

Query: 537 NSGMYVLLSNLYAAS 551
           N     L+  L A S
Sbjct: 513 NPNTATLVVVLSACS 527



 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 16/278 (5%)

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY 241
           +IS Y      + +  LF   P +D F W + +       +  +  +F+  M  +N +  
Sbjct: 50  LISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPN 109

Query: 242 N---AMVAGYVQSNKMDMARELFEAMPSR------NVSSWNTMITGYGQNGDIAQARKLF 292
           +    MVA       M  +     A+  +      N +  ++ ++ Y +  ++  A K+F
Sbjct: 110 HFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVF 169

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR---DGESLNRSTFSCALSTCADIA 349
           D +P RD V+W A++ GY Q G  E  L    E+ R   D +  N  T       C ++ 
Sbjct: 170 DEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLG 229

Query: 350 ALELGKQIHGQVVKTGYETGCF--VGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
            L  G+ +HG VVK G   GC   + +++L MY KCG   EA   F  +  KD++SW +M
Sbjct: 230 DLVSGRCLHGLVVKNG--IGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSM 287

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
           I  YAR G     +  F  M    V PD + +  +LS 
Sbjct: 288 IRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSG 325


>Medtr2g082550.1 | PPR containing plant-like protein, putative | HC
           | chr2:34637734-34634734 | 20130731
          Length = 631

 Score =  300 bits (769), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/660 (30%), Positives = 319/660 (48%), Gaps = 127/660 (19%)

Query: 66  RRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEA-------RE--------VFYQMP 110
           R    AR+LFD++PQ D  + + ++S    +G  +EA       RE        VF  + 
Sbjct: 26  RNFKRARQLFDNIPQPDPTTSSTLISALTTHGLLNEAINICTSLRERGIKLDIPVFMAVA 85

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
              A S + L    +HN    +A R     + + +   N L+  + K K +   R++FD 
Sbjct: 86  KACAASRDALNVKELHN----DATR---CGAMFNVFVGNALIHAYGKCKCVEGERRVFDD 138

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
           M VRDV                 +  N+F +        W         NG+  +  T  
Sbjct: 139 MVVRDV-----------------KGLNVFHE------MGW---------NGVKLDPVTVS 166

Query: 231 DQMP---QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQ 287
             +P      ++     + G+   N M             NV   N ++  Y +   + +
Sbjct: 167 SILPACADLKDLKSGKAIHGFAVRNGM-----------VENVFVCNALVNLYAKCLCVRE 215

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
           A  +FD+MP RD VSW+ +++ Y     YE+ L++F ++ RDG   N  T+         
Sbjct: 216 AHAIFDLMPHRDVVSWSGVLT-YFTNKEYEKGLSLFSQMCRDGVETNEVTWK-------- 266

Query: 348 IAALELGKQIHG------QVVKTGYETGCFVGNALL---GMYFKCGSIGEANDVFEGIEE 398
             A+E+ +++        ++  +     C++  +L     +++      +  +VF+ I  
Sbjct: 267 --AMEMLRKMQNMGFKPNEITISSILQACYLSESLRMCKEIHYYVFRHWKVWNVFDMIAI 324

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
           KDVV+W TMI   A HG GK+AL +FE M    VKPD +T + VLS+CSH+ L++ G + 
Sbjct: 325 KDVVAWTTMINANAMHGNGKEALFLFEKMLLSMVKPDSVTFICVLSSCSHSRLVEEGVQI 384

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           F SM+KD+ V P++ HY+C++D+  RAGRL EA + ++ MP  P A +W +LL   R++ 
Sbjct: 385 FNSMSKDHLVEPNAIHYSCVVDIYSRAGRLNEAYEFIQRMPMGPTAGAWKSLLAGCRVYK 444

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           N EL + +A+ +F++EP  S  YV L N+   +  W++A  +R  M++ G+ K  G SW+
Sbjct: 445 NVELAKISAKKLFEIEPSRSRDYVALCNILVTAKLWSEASKIRMFMKESGITKTPGCSWL 504

Query: 579 EVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKY 638
            V N++H F  GD                                     ++EK   L  
Sbjct: 505 HVGNRVHNFVAGD-------------------------------------KKEKVESLCK 527

Query: 639 HSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNE 698
           HSEKLAVAFGIL +     IRV KNLR+C DCHNAIK+++K+V  +I++RDS  F  F+E
Sbjct: 528 HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMAKVVDVMIVVRDS--FRRFDE 585



 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 127/272 (46%), Gaps = 38/272 (13%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PH 111
           N ++  Y +   + +A  +FD MP +DVVSW+ +L+ +    Y ++   +F QM      
Sbjct: 201 NALVNLYAKCLCVREAHAIFDLMPHRDVVSWSGVLTYFTNKEY-EKGLSLFSQMCRDGVE 259

Query: 112 KNAISWN-----------GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKM 160
            N ++W            G     +    I +AC L +S    + I +      +V R  
Sbjct: 260 TNEVTWKAMEMLRKMQNMGFKPNEITISSILQACYLSESLRMCKEIHY------YVFRHW 313

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSG 216
                 +FD + ++DVV+W TMI+  A  G+  +A  LF++        D  T+  ++S 
Sbjct: 314 --KVWNVFDMIAIKDVVAWTTMINANAMHGNGKEALFLFEKMLLSMVKPDSVTFICVLSS 371

Query: 217 YVQNGMLDEARTFF-----DQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP-SRNVS 270
              + +++E    F     D + + N I Y+ +V  Y ++ +++ A E  + MP      
Sbjct: 372 CSHSRLVEEGVQIFNSMSKDHLVEPNAIHYSCVVDIYSRAGRLNEAYEFIQRMPMGPTAG 431

Query: 271 SWNTMITG--YGQNGDIAQ--ARKLFDMMPQR 298
           +W +++ G    +N ++A+  A+KLF++ P R
Sbjct: 432 AWKSLLAGCRVYKNVELAKISAKKLFEIEPSR 463


>Medtr6g093170.1 | PPR containing protein | HC |
           chr6:35177726-35180122 | 20130731
          Length = 608

 Score =  298 bits (764), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/469 (35%), Positives = 272/469 (57%), Gaps = 14/469 (2%)

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +F +  D +    N  M  + +   +   RKLFD++  RD VSWN MISG  +     +A
Sbjct: 129 VFKTGLDSDYYVSNSFMDMYAELGRIDFVRKLFDEISERDSVSWNVMISGCVKCRRFEEA 188

Query: 196 KNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY-----NAMV 245
             +F     D +      T  + ++    +  ++  +     + +K E+ +     NA++
Sbjct: 189 VEVFQRMRVDSNEKISEATVVSSLTACAASRNVEVGKEIHGFIIEK-ELDFTMRMGNALL 247

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
             Y +   + +ARE+F+ M  +NV+ W +M+TGY   G++ +AR LFD  P RD V W A
Sbjct: 248 DMYCKCGYVSVAREIFDGMIEKNVNCWTSMVTGYVSCGELDKARDLFDKSPTRDVVLWTA 307

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           +I+GY Q   ++EA+ +F E++  G   ++      L+ CA +  LE G+ IH  V +  
Sbjct: 308 MINGYVQFNRFDEAVALFEEMQVRGVKPDKFIVVALLTCCAQLGTLEHGRWIHDYVRENR 367

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
                 VG +L+ MY KCG + ++ +VF G++EKD  SW ++I G A +G   +AL +FE
Sbjct: 368 IVVDAVVGTSLIEMYAKCGCVEKSLEVFNGLKEKDTASWTSIICGLAMNGKTIEALELFE 427

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRA 485
            MK  G KPD++T + +L+ACSH GL++ G + F+SM+  Y + P+ +HY C IDLLGRA
Sbjct: 428 EMKIFGAKPDDVTFIVLLNACSHGGLVEEGHKLFHSMSCIYGIEPNLEHYGCFIDLLGRA 487

Query: 486 GRLEEAQDLMRNMP---FEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYV 542
           G L EA++L++ +P    E   A +G+ L A R +GNT++GE+ A  + K++  +S ++ 
Sbjct: 488 GLLHEAEELIKKLPDQKNETIVAIYGSFLSACRTYGNTDMGERIATALEKVKSSDSSLHS 547

Query: 543 LLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGD 591
           LL+++YA++ RW DA   RS+M+D+ ++KV G S +EV    ++  VGD
Sbjct: 548 LLASIYASADRWEDASKTRSKMKDLHIRKVPGCSAIEVDGSGNQGGVGD 596



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 149/361 (41%), Gaps = 77/361 (21%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
           VF T         N+ +  Y    R    R LFD++ +RD VSWNVM++G V+ RR  +A
Sbjct: 129 VFKTGLDSDYYVSNSFMDMYAELGRIDFVRKLFDEISERDSVSWNVMISGCVKCRRFEEA 188

Query: 72  RRLFDSM--------PQKDVVS--------------------------------WNAMLS 91
             +F  M         +  VVS                                 NA+L 
Sbjct: 189 VEVFQRMRVDSNEKISEATVVSSLTACAASRNVEVGKEIHGFIIEKELDFTMRMGNALLD 248

Query: 92  GYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCL 151
            Y + GY   ARE+F  M  KN   W  ++  YV  G +++A  LFD     +++ W  +
Sbjct: 249 MYCKCGYVSVAREIFDGMIEKNVNCWTSMVTGYVSCGELDKARDLFDKSPTRDVVLWTAM 308

Query: 152 MGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT 211
           + G+V+      A  LF++M VR V                             D F   
Sbjct: 309 INGYVQFNRFDEAVALFEEMQVRGV---------------------------KPDKFIVV 341

Query: 212 AMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG-----YVQSNKMDMARELFEAMPS 266
           A+++   Q G L+  R   D + ++N I  +A+V       Y +   ++ + E+F  +  
Sbjct: 342 ALLTCCAQLGTLEHGRWIHDYV-RENRIVVDAVVGTSLIEMYAKCGCVEKSLEVFNGLKE 400

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMM----PQRDCVSWAAIISGYAQTGHYEEALNM 322
           ++ +SW ++I G   NG   +A +LF+ M     + D V++  +++  +  G  EE   +
Sbjct: 401 KDTASWTSIICGLAMNGKTIEALELFEEMKIFGAKPDDVTFIVLLNACSHGGLVEEGHKL 460

Query: 323 F 323
           F
Sbjct: 461 F 461



 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 44/301 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA++  Y +    S+AR++FD M ++++  W  M+TGYV    L  AR LFD  P +DVV
Sbjct: 244 NALLDMYCKCGYVSVAREIFDGMIEKNVNCWTSMVTGYVSCGELDKARDLFDKSPTRDVV 303

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM------PHKNAISWNGLLAAYVHNGRIEEACRLFD 138
            W AM++GY Q    DEA  +F +M      P K  +    LL      G +E    + D
Sbjct: 304 LWTAMINGYVQFNRFDEAVALFEEMQVRGVKPDKFIVV--ALLTCCAQLGTLEHGRWIHD 361

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
                           +V+   +           V D V   ++I  YA+ G + ++  +
Sbjct: 362 ----------------YVRENRI-----------VVDAVVGTSLIEMYAKCGCVEKSLEV 394

Query: 199 FDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEISYNAMVAGYVQSNKM 254
           F+    +D  +WT+++ G   NG   EA   F++M     + +++++  ++        +
Sbjct: 395 FNGLKEKDTASWTSIICGLAMNGKTIEALELFEEMKIFGAKPDDVTFIVLLNACSHGGLV 454

Query: 255 DMARELFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
           +   +LF +M        N+  +   I   G+ G + +A +L   +P +   +  AI   
Sbjct: 455 EEGHKLFHSMSCIYGIEPNLEHYGCFIDLLGRAGLLHEAEELIKKLPDQKNETIVAIYGS 514

Query: 310 Y 310
           +
Sbjct: 515 F 515



 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 22/257 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           + G+   A  +F+ M  ++   + +M++GY+       ARDLFDK P RD+V W  M+ G
Sbjct: 252 KCGYVSVAREIFDGMIEKNVNCWTSMVTGYVSCGELDKARDLFDKSPTRDVVLWTAMING 311

Query: 62  YVRNRRLGDARRLFDSM------PQKDVVSWNAMLSGYAQNGYADEAREVF-YQMPHK-- 112
           YV+  R  +A  LF+ M      P K +V   A+L+  AQ G  +  R +  Y   ++  
Sbjct: 312 YVQFNRFDEAVALFEEMQVRGVKPDKFIVV--ALLTCCAQLGTLEHGRWIHDYVRENRIV 369

Query: 113 -NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKM 171
            +A+    L+  Y   G +E++  +F+   + +  SW  ++ G         A +LF++M
Sbjct: 370 VDAVVGTSLIEMYAKCGCVEKSLEVFNGLKEKDTASWTSIICGLAMNGKTIEALELFEEM 429

Query: 172 HV----RDVVSWNTMISGYAQDGDMSQAKNLFDQSP-----HQDVFTWTAMVSGYVQNGM 222
            +     D V++  +++  +  G + +   LF           ++  +   +    + G+
Sbjct: 430 KIFGAKPDDVTFIVLLNACSHGGLVEEGHKLFHSMSCIYGIEPNLEHYGCFIDLLGRAGL 489

Query: 223 LDEARTFFDQMP-QKNE 238
           L EA     ++P QKNE
Sbjct: 490 LHEAEELIKKLPDQKNE 506



 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 12/272 (4%)

Query: 303 WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV 362
           +  +I  + +   ++  +++F +++ +G   +  T+   L   A IA    G +IH  V 
Sbjct: 71  YNLLIKSFFKRNSFQTLISLFNQLRLNGLYPDNYTYPFVLKAVAFIADFRQGTKIHAFVF 130

Query: 363 KTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALM 422
           KTG ++  +V N+ + MY + G I     +F+ I E+D VSWN MI+G  +    ++A+ 
Sbjct: 131 KTGLDSDYYVSNSFMDMYAELGRIDFVRKLFDEISERDSVSWNVMISGCVKCRRFEEAVE 190

Query: 423 VFESMKT-IGVKPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMID 480
           VF+ M+     K  E T+V  L+AC+ +  ++ G E + + + K+   T   +    ++D
Sbjct: 191 VFQRMRVDSNEKISEATVVSSLTACAASRNVEVGKEIHGFIIEKELDFT--MRMGNALLD 248

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE--KAAEMVFKMEPHNS 538
           +  + G +  A+++   M  E     W      S + G    GE  KA ++  K    + 
Sbjct: 249 MYCKCGYVSVAREIFDGM-IEKNVNCW-----TSMVTGYVSCGELDKARDLFDKSPTRDV 302

Query: 539 GMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
            ++  + N Y    R+ +A  +   M+  GV+
Sbjct: 303 VLWTAMINGYVQFNRFDEAVALFEEMQVRGVK 334


>Medtr3g101700.1 | PPR containing plant-like protein | HC |
           chr3:46826943-46824374 | 20130731
          Length = 729

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/616 (29%), Positives = 302/616 (49%), Gaps = 69/616 (11%)

Query: 24  YNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM----- 78
           + ++I  Y++    S AR++FD+M  RD+VSWNV++ GY +N  L  A +LF  M     
Sbjct: 94  HTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRENF 153

Query: 79  --PQKDVVSW--------------------------------NAMLSGYAQNGYADEARE 104
              Q  +VS                                 NA++S YA+    + ++ 
Sbjct: 154 KPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQL 213

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGF----VKRKM 160
           +F +M  K+ +SWN ++  Y  NG  ++A   F             L  GF    V    
Sbjct: 214 LFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEM----------LKEGFHPSSVTIMN 263

Query: 161 LGAARKLFDKMH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTA 212
           L +A    + +H          D     +++  YA+ G  + AK L+   P +D+ T TA
Sbjct: 264 LVSANAFPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTA 323

Query: 213 MVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMAREL----FEAM 264
           ++S Y + G ++ A   F Q  Q     + ++   ++ G    +   +         ++ 
Sbjct: 324 IISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSG 383

Query: 265 PSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFI 324
            S +    N +I+ Y +  +I  A  LF  M ++  ++W ++ISG  Q G   +A+ +F 
Sbjct: 384 LSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFS 443

Query: 325 EIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           E+   G+  +  T +  LS C  +  L +G+ +H  +++       F+G AL+ MY KCG
Sbjct: 444 EMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCG 503

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
            +  A  VF  I++  + +WN +I+GY+ +G    A   +  ++  G+KPD+IT +GVL+
Sbjct: 504 RLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLA 563

Query: 445 ACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPA 504
           AC+H GL+  G EYF  M K+Y + PS +HY C++ LLG+ G  +EA + +  M  +P +
Sbjct: 564 ACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDS 623

Query: 505 ASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRM 564
           A WGALL A  I    +LGE  A+ +F +   N G YVL+SNLYA  GRW D   +R  M
Sbjct: 624 AVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVARVREMM 683

Query: 565 RDVGVQKVTGYSWVEV 580
           +D G    +G S ++V
Sbjct: 684 KDSGGDGCSGVSVIDV 699



 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 16/236 (6%)

Query: 226 ARTFFDQMPQ----KNEISYNAMVAGYVQSNKMD--------MARELFEAMPSRNVSSW- 272
           A   F Q+ Q     NE +++ ++  Y+ S             AR++      R V+ + 
Sbjct: 32  ALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQARQIQTQCLKRGVNQFI 91

Query: 273 ---NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
               ++I  Y + G  + AR +FD M  RD VSW  +I GY+Q G+   A+ +F+++ R+
Sbjct: 92  HVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRE 151

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
               N++T    L +C     +  G+ IHG  +K G+     + NAL+ MY KC  +  +
Sbjct: 152 NFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEAS 211

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
             +F+ ++EK VVSWNTMI  Y ++G   +A++ F+ M   G  P  +T++ ++SA
Sbjct: 212 QLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSA 267



 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 49/321 (15%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR----------DLVSWNV---- 57
           +F+ M  +S VS+N MI  Y +N  F  A   F +M +           +LVS N     
Sbjct: 214 LFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFPEN 273

Query: 58  -------------------MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGY 98
                              ++  Y +      A++L+   P KD+++  A++S Y++ G 
Sbjct: 274 VHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGD 333

Query: 99  ADEAREVFYQMPH----KNAISWNGLLAAYVHNGRIEEACRL--FDSKSDW--ELISWNC 150
            + A E F Q        +A++  G+L    +       C    +  KS    + +  N 
Sbjct: 334 IESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANG 393

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQD 206
           L+  + +   + AA  LF  M  + +++WN+MISG  Q G  S A  LF +        D
Sbjct: 394 LISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFSEMSMCGKKPD 453

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFE 262
             T  +++SG  Q G L    T    + + N    +    A++  Y +  ++D A ++F 
Sbjct: 454 AITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFY 513

Query: 263 AMPSRNVSSWNTMITGYGQNG 283
            +    +++WN +I+GY   G
Sbjct: 514 NIKDPCLATWNAIISGYSLYG 534



 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 17/218 (7%)

Query: 319 ALNMFIEIKRDGESLNRSTFSC---------ALSTCADIAALELGKQIHGQVVKTGYETG 369
           AL +F +I +   + N  TFS          + + C   AAL+  +QI  Q +K G    
Sbjct: 32  ALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQ-ARQIQTQCLKRGVNQF 90

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT 429
             V  +L+ +Y K G    A ++F+ +  +DVVSWN +I GY+++G+   A+ +F  M  
Sbjct: 91  IHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLR 150

Query: 430 IGVKPDEITMVGVLSACSHAGLIDRG-TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
              KP++ T+V +L +C    LI +G + + + +   + +   S     ++ +  +   L
Sbjct: 151 ENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGL--DSHLNNALMSMYAKCDDL 208

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKA 526
           E +Q L   M  E    SW  ++G   ++G   L +KA
Sbjct: 209 EASQLLFDEMD-EKSVVSWNTMIG---VYGQNGLFDKA 242


>Medtr6g059820.1 | PPR containing plant-like protein | HC |
           chr6:20520961-20518530 | 20130731
          Length = 528

 Score =  297 bits (761), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 256/466 (54%), Gaps = 22/466 (4%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYA--QDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
           L  A ++F+ +H  ++  +  +I+ ++  Q       K + + +   + F +  ++    
Sbjct: 55  LHYAHQIFNHIHSPNIYLFTAIITAFSSQQHTTFKLFKTMLNSNIRPNNFIYPHVLKSVK 114

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM-----ARELFEAMPSRNVSSWN 273
           +  ++D       Q+ +   ++Y  +    V S    +     A ++F+ M  RN+  + 
Sbjct: 115 ERFLVDLVHA---QIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFT 171

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR----- 328
            +++GY + GD+ +   +FD M  RD  +W A+ISG  Q G + E + +F E+       
Sbjct: 172 VLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLG 231

Query: 329 -----DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKC 383
                 G   N+ T  C LS C     L+LGK IHG V + G+    FV NAL+ MY KC
Sbjct: 232 EGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKC 291

Query: 384 GSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG--VKPDEITMVG 441
           GS+  A  VFE  + K + SWN+MI  YA HG  + A+  FE M   G  V+PDE+T +G
Sbjct: 292 GSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIG 351

Query: 442 VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           +L+AC+H GL+++G  YF  M K+Y + P   HY C+IDLLGRAG+ +EA D+++ M  E
Sbjct: 352 LLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSME 411

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMR 561
           P    WG+LL   ++HG T+L E AA+ + +++PHN G   +L+N+Y   G+W +  N+ 
Sbjct: 412 PDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDPHNGGYGTMLANIYGQLGKWDEMRNVW 471

Query: 562 SRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEEL 607
           S+++     K+ G SW+EV +K+H+F   D  +P+ + +Y  LE L
Sbjct: 472 SKLKQQKSYKIPGCSWIEVDDKVHQFFSLDQSNPKTEELYNILESL 517



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 167/343 (48%), Gaps = 47/343 (13%)

Query: 23  SYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKD 82
           SY+ ++ G LR+A       +FD+M +R++V + V+++GY+R   +     +FD M  +D
Sbjct: 144 SYSKVLGG-LRDAH-----KVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRD 197

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMP--------------HKNAISWNGLLAAYVHNG 128
           V +WNA++SG  QNG+  E   +F +M                 N ++   +L+A  H G
Sbjct: 198 VPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGG 257

Query: 129 RIEEACRL--FDSKSDWELISW--NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMIS 184
            ++    +  +  +  + + S+  N L+  + K   L  ARK+F+    + + SWN+MI+
Sbjct: 258 MLQLGKWIHGYVYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMIN 317

Query: 185 GYAQDGDMSQAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE 238
            YA  G    A   F++          D  T+  +++     G++++   +F+ M ++  
Sbjct: 318 CYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYG 377

Query: 239 IS-----YNAMVAGYVQSNKMDMARELFEAM---PSRNVSSWNTMITGYGQNG--DIAQ- 287
           I      Y  ++    ++ + D A ++ + M   P   V  W +++ G   +G  D+A+ 
Sbjct: 378 IEPQIAHYGCLIDLLGRAGQFDEAMDVVKGMSMEPDEVV--WGSLLNGCKVHGRTDLAEF 435

Query: 288 -ARKLFDMMPQRDCVSWAAIISG-YAQTGHYEEALNMFIEIKR 328
            A+KL ++ P      +  +++  Y Q G ++E  N++ ++K+
Sbjct: 436 AAKKLVEIDPHNG--GYGTMLANIYGQLGKWDEMRNVWSKLKQ 476


>Medtr5g018370.1 | PPR containing plant-like protein | HC |
           chr5:6845861-6848150 | 20130731
          Length = 714

 Score =  297 bits (761), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/645 (29%), Positives = 325/645 (50%), Gaps = 39/645 (6%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLR--NARFSLARDLFDKMPQRDLVSWNVML 59
           R G  + A +VF+ MP+R+ VSYNA+++ Y R        A +L+ +M    L   N+ +
Sbjct: 58  RCGSLEDAHQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTI 117

Query: 60  TGYVRNRRL-GDAR--RLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPH 111
           T  ++   L GD     L  +   K     D+    ++L+ Y+       A  VF  M  
Sbjct: 118 TSLLQAASLHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNE 177

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK- 170
           ++ ++WN L+  Y+ N +IE+   LF      E++        +    +L A  +L D  
Sbjct: 178 RDNVAWNSLILGYLKNDKIEKGVYLF-----IEMMWVGFTPTVYTFCMILSACSRLKDYF 232

Query: 171 ----MHVRDVVS--------WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
               +H R +V          N ++  Y   GD   A  +F +    D+ +W +M+SGY 
Sbjct: 233 SGRLIHARVIVGNVSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYF 292

Query: 219 QNGMLDEARTFFDQM-----PQKNEISYNAMVAGY----VQSNKMDMARELFEAMPSRNV 269
           +N   ++A   F Q+     P+ ++ +Y  +++        S    +  ++ +A   R+V
Sbjct: 293 ENEDGEKAMNLFVQLKALCFPKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVRSV 352

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
              +T+++ Y +N +   A ++F  +P +D + W  +I+GY++      A+  F E+  +
Sbjct: 353 FVGSTLVSMYFKNQETEAALRVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHE 412

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
              ++    S  LS CA +A L  G+ IH    K GY+    V  +L+ MY K G++  A
Sbjct: 413 VHEIDDYVLSGVLSVCAYLAILRQGEIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAA 472

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
             VF  +   D+  WN+M+ G++ HG    AL +FE +   G+ PD++T + +LSACSH+
Sbjct: 473 YLVFSQVSHPDLKCWNSMLGGFSHHGMVDDALKLFEEIIKQGLVPDQVTFLSLLSACSHS 532

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF-EPPAASWG 508
            L+++G +  ++      + P  KHY+CM+ LL RA  LEEA++++   P+ E     W 
Sbjct: 533 RLVEQG-KLLWNYMSSIGLVPGPKHYSCMVTLLSRAALLEEAEEIINKSPYVEDNVELWR 591

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
            LL A  I+ N ++G +AAE V +    +    +LLSNLYAA+GRW +   +R  M+ + 
Sbjct: 592 TLLSACVINKNLKVGVRAAEEVLRFNAEDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLI 651

Query: 569 VQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRR 613
           ++K  G SW+E +N IH F+ GD  HP+ D++ A L  L   M R
Sbjct: 652 MEKEPGLSWIEAKNDIHVFSSGDQSHPKVDQVQAELHRLKGNMIR 696


>Medtr1g040000.1 | PPR containing plant-like protein | HC |
           chr1:14632880-14635263 | 20130731
          Length = 526

 Score =  295 bits (755), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 221/361 (61%), Gaps = 4/361 (1%)

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRD--CVSWAAIISGYAQTG 314
           AR+LF+     N    N MI  Y + GD++ ARKLFD M +RD    SW A+ISGY Q  
Sbjct: 165 ARKLFDEFGG-NGCVLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAH 223

Query: 315 HYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN 374
           +  EA+ +F  ++ +    +       LS CAD+ AL LG+ IH  + K        + N
Sbjct: 224 NPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYN 283

Query: 375 ALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM-KTIGVK 433
           +L+ MY K G+I +A ++FE ++ K +++W TMIAG A HG GK+AL VF  M K   VK
Sbjct: 284 SLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVK 343

Query: 434 PDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           P+E+T + +LSACSH GL++ G +YF SM   Y + P  +HY CMIDLLGRAG L+EA++
Sbjct: 344 PNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKE 403

Query: 494 LMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGR 553
           ++  MPFE  AA WG+LL AS   G+ EL E+A   +  +EP + G Y LLSN YA+ GR
Sbjct: 404 MVLRMPFEANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYASLGR 463

Query: 554 WADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRR 613
           W ++  +R  M+D GV+KV G S++EV N +++F  GD        IY  L  LD +++ 
Sbjct: 464 WNESRMVRKVMQDAGVEKVPGVSFIEVNNIVYEFIAGDKLSIYFVDIYDVLHSLDGQIKI 523

Query: 614 E 614
           E
Sbjct: 524 E 524



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 24/271 (8%)

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ--SPHQDVFTWTAMVSGYVQN 220
           +ARKLFD+      V  N MI  Y + GD+S A+ LFD      +DVF+WTAM+SGY Q 
Sbjct: 164 SARKLFDEFGGNGCV-LNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQA 222

Query: 221 GMLDEARTFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSW 272
              +EA   F +M  +N    EI+  A+++       + +   +   +     S+ V  +
Sbjct: 223 HNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLY 282

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI-KRDGE 331
           N++I  Y ++G+I +A +LF+ M  +  ++W  +I+G A  G  +EAL +F  + K D  
Sbjct: 283 NSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRV 342

Query: 332 SLNRSTFSCALSTCADIAALELGKQIHGQV-VKTGYET-----GCFVGNALLGMYFKCGS 385
             N  TF   LS C+ +  +ELG+     +  + G E      GC +   LLG   + G 
Sbjct: 343 KPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMID--LLG---RAGH 397

Query: 386 IGEAND-VFEGIEEKDVVSWNTMIAGYARHG 415
           + EA + V     E +   W +++A   R G
Sbjct: 398 LQEAKEMVLRMPFEANAAIWGSLLAASTRCG 428



 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 33/308 (10%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQ--KDVVSWNAMLSGYAQNG 97
           AR LFD+      V  N M+  YV+   + +AR+LFDSM +  KDV SW AM+SGY Q  
Sbjct: 165 ARKLFDEFGGNGCV-LNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAH 223

Query: 98  YADEAREVFYQMPHKNA----ISWNGLLAAYVHNGRIE--EACRLFDSKSDWELIS--WN 149
             +EA ++F +M  +N     I+   +L+A    G +   E    +  K     I   +N
Sbjct: 224 NPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPLYN 283

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD--- 206
            L+  + K   +  A +LF+ M  + +++W TMI+G A  G   +A  +F     +D   
Sbjct: 284 SLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVK 343

Query: 207 --VFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV-----AGYVQSNKM 254
               T+ A++S     G+++  R +F  M  +  I      Y  M+     AG++Q  K 
Sbjct: 344 PNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKE 403

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGD---IAQARKLFDMMPQRDCVSWAAIISGYA 311
            + R  FEA    N + W +++    + GD     +A +   ++    C +++ + + YA
Sbjct: 404 MVLRMPFEA----NAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGHCGNYSLLSNTYA 459

Query: 312 QTGHYEEA 319
             G + E+
Sbjct: 460 SLGRWNES 467


>Medtr8g087980.1 | PPR containing plant-like protein | HC |
           chr8:36412954-36411351 | 20130731
          Length = 515

 Score =  295 bits (754), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 261/461 (56%), Gaps = 14/461 (3%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQ 219
           A  LF  +   ++  +N++I+ Y  +    +   +F +  + ++     T+T +V   V 
Sbjct: 41  AETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVS 100

Query: 220 NGMLDEARTFFDQMPQKNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
              L++  T   ++   +++ + ++++  + + + + +AR++F+   +RNV  W ++++G
Sbjct: 101 LSSLEQVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSG 160

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE-----SL 333
           Y   G + +AR +FD MP R+  S++A++SGY + G + E + +F E+K+  +       
Sbjct: 161 YCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKF 220

Query: 334 NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           N +     L+ C  + A E GK IH  V + G E    +G AL+  Y KCG +  A  VF
Sbjct: 221 NGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVF 280

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
             +  KDV +W+ MI G A +G  K AL +FE M+ +G KP+E+T VGVL+AC+H  L  
Sbjct: 281 NKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFG 340

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
                F  M++ Y++TPS +HY C++D+L R+G++++A   + +M  EP  A WG+LL  
Sbjct: 341 ESARLFGIMSEKYNITPSIEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAIWGSLLNG 400

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
             +HG+ ELG+K  + + + EP +SG YVLL+N+YA  G+W     +R  M+D GV  V+
Sbjct: 401 CLMHGHYELGQKVGKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVS 460

Query: 574 GYSWVEVQNKIHKFTVGD--CFHPEKDRIYAFLEELDLKMR 612
           G+S++E+   IHKF   D  C +  +  IY  L  L  K+ 
Sbjct: 461 GWSFIEIDQTIHKFFADDKCCLYSRE--IYDVLSHLGKKVE 499



 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 205/464 (44%), Gaps = 88/464 (18%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVH 126
           A  LF  +P  ++  +N++++ Y  N    +   VF +M + N    + ++  L+ A V 
Sbjct: 41  AETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKACVS 100

Query: 127 NGRIEEACRL---FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMI 183
              +E+   L     + SD   +S   ++  F K   +  AR++FD+   R+VV W +++
Sbjct: 101 LSSLEQVFTLSMKLGNSSDVYFVS--SVINAFSKHSAIHLARQVFDECSNRNVVCWTSLV 158

Query: 184 SGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE----I 239
           SGY   G +++A+++FD+ P ++  +++AMVSGYV+NG   E    F ++ +K++    +
Sbjct: 159 SGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACL 218

Query: 240 SYNAM--------------------VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGY 279
            +N                      +  YV+ N ++   EL  A           +I  Y
Sbjct: 219 KFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTA-----------LIDFY 267

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + G +  A K+F+ MP +D  +W+A+I G A  G+ + AL +F ++++ G   N  TF 
Sbjct: 268 MKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFV 327

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
             L+ C         K + G+  +            L G+      + E  ++   IE  
Sbjct: 328 GVLTACNH-------KSLFGESAR------------LFGI------MSEKYNITPSIEH- 361

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
               +  ++   AR G  K+AL    SM    ++PD      +L+ C   G  + G +  
Sbjct: 362 ----YGCVVDVLARSGQVKKALTFINSMH---IEPDGAIWGSLLNGCLMHGHYELGQKV- 413

Query: 460 YSMNKDYSVTPSSKH---YTCMIDLLGRAGRLE---EAQDLMRN 497
                 Y +    KH   Y  + ++    G+ E   E + LM++
Sbjct: 414 ----GKYLIEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKD 453



 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 149/311 (47%), Gaps = 44/311 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           +++I+ + +++   LAR +FD+   R++V W  +++GY     + +AR +FD MP ++  
Sbjct: 124 SSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEA 183

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVHN-----GRIEEA-- 133
           S++AM+SGY +NG+  E  ++F ++  K+     + +NG L   V N     G  EE   
Sbjct: 184 SYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKW 243

Query: 134 --CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGD 191
               + ++  +++L     L+  ++K   +  A K+F+KM V+DV +W+ MI G A +G+
Sbjct: 244 IHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGN 303

Query: 192 MSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG 247
              A  LF++     P  +  T+  +++      +  E+   F  M +K  I+       
Sbjct: 304 NKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNIT------- 356

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAI 306
                            PS  +  +  ++    ++G + +A    + M  + D   W ++
Sbjct: 357 -----------------PS--IEHYGCVVDVLARSGQVKKALTFINSMHIEPDGAIWGSL 397

Query: 307 ISGYAQTGHYE 317
           ++G    GHYE
Sbjct: 398 LNGCLMHGHYE 408


>Medtr1g040705.1 | PPR containing plant-like protein | HC |
           chr1:15076249-15083015 | 20130731
          Length = 702

 Score =  293 bits (751), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 214/366 (58%), Gaps = 9/366 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  K +H  V++          N +L MYF+CGS+ +A +VF+ + E+D+
Sbjct: 346 MQQCGKTKSLEEAKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMNERDL 405

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +   MI   A++GF + ++ +F   K  G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 406 TTIYIMIKQLAKNGFAEDSIDLFTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFES 465

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M++DY + P+ +HY  ++D++G  G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 466 MSRDYEIVPTMEHYVSIVDMIGSIGNLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTE 525

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P        +S L   +             ++    K    + V   
Sbjct: 526 LGDRCAELVEKLDPSRLNEKSKVSLLLIETSDIT---------KNKKQNKPPDNNPVGNM 576

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           N+IH++  GD   PE + IYA L  L ++M+  GY++ T+  LHDV++E+KE  L  HSE
Sbjct: 577 NRIHEYRAGDTSLPENNMIYALLRRLRVQMKEAGYIAETRFCLHDVDQEDKEDALLGHSE 636

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LA+A G+L  PA   IRVIKNLRVC DCH A+K IS +VGR  I+RD+ RFHHF  G+C
Sbjct: 637 RLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLC 696

Query: 702 SCGDYW 707
           SC DYW
Sbjct: 697 SCRDYW 702


>Medtr1g040705.3 | PPR containing plant-like protein | HC |
           chr1:15076249-15080305 | 20130731
          Length = 713

 Score =  293 bits (751), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 214/366 (58%), Gaps = 9/366 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  K +H  V++          N +L MYF+CGS+ +A +VF+ + E+D+
Sbjct: 357 MQQCGKTKSLEEAKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMNERDL 416

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +   MI   A++GF + ++ +F   K  G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 417 TTIYIMIKQLAKNGFAEDSIDLFTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFES 476

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M++DY + P+ +HY  ++D++G  G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 477 MSRDYEIVPTMEHYVSIVDMIGSIGNLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTE 536

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P        +S L   +             ++    K    + V   
Sbjct: 537 LGDRCAELVEKLDPSRLNEKSKVSLLLIETSDIT---------KNKKQNKPPDNNPVGNM 587

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           N+IH++  GD   PE + IYA L  L ++M+  GY++ T+  LHDV++E+KE  L  HSE
Sbjct: 588 NRIHEYRAGDTSLPENNMIYALLRRLRVQMKEAGYIAETRFCLHDVDQEDKEDALLGHSE 647

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LA+A G+L  PA   IRVIKNLRVC DCH A+K IS +VGR  I+RD+ RFHHF  G+C
Sbjct: 648 RLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLC 707

Query: 702 SCGDYW 707
           SC DYW
Sbjct: 708 SCRDYW 713


>Medtr2g015530.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:4610013-4612058 | 20130731
          Length = 520

 Score =  293 bits (749), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 261/443 (58%), Gaps = 15/443 (3%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQD 206
           L+  ++K   L  AR++FD +H R + ++N MI GY ++G + ++ +LF Q        D
Sbjct: 78  LLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPD 137

Query: 207 VFTWTAMV---SGYVQNGML-DEARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMAR 258
            FT++ ++   +  V NGM+ D  R    Q+     +K+++   A++  YV++ ++   R
Sbjct: 138 GFTFSMILKASTNRVSNGMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNGRVGYGR 197

Query: 259 ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYE- 317
            +F+ M  +NV S  ++I+GY   G    A  +F     +D V + A+I GY++   Y  
Sbjct: 198 TVFDVMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAM 257

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALL 377
            +L ++I+++R     N STF+  +  C+ +AA E+G+Q+  Q++KT +     +G+AL+
Sbjct: 258 RSLEVYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGSALI 317

Query: 378 GMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDE 436
            MY KCG + +A  VF+ + EK+V SW +MI GY ++GF  +AL +F+ M+    + P+ 
Sbjct: 318 DMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPNF 377

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
           +T +  L+AC+HAGL++RG E F SM  +Y + P  +HY CM+DLLGRAG L +A + + 
Sbjct: 378 VTFLSALTACAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQAWEFVT 437

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN-SGMYVLLSNLYAASGRWA 555
            MP  P +  W ALL + RIHGN E+ + AA  +FK+  +   G YV LSN  A +G+W 
Sbjct: 438 RMPERPNSDVWLALLSSCRIHGNIEMAKLAANELFKLNAYGRPGAYVALSNTLADAGKWD 497

Query: 556 DAGNMRSRMRDVGVQKVTGYSWV 578
           +   +R  M++ G+ K T  SWV
Sbjct: 498 NVSELREVMKEKGISKDTACSWV 520



 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 165/325 (50%), Gaps = 28/325 (8%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKN 113
           +L  Y+++  L  AR++FD +  + + ++N M+ GY +NG  DE+ ++F+Q+       +
Sbjct: 78  LLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPD 137

Query: 114 AISWNGLLAAY---VHNGRIEEACRL-------FDSKSDWELISWNCLMGGFVKRKMLGA 163
             +++ +L A    V NG + +  R+       FD + D  L +   L+  +VK   +G 
Sbjct: 138 GFTFSMILKASTNRVSNGMVGDLGRMVHAQILKFDVEKDDVLCT--ALIDSYVKNGRVGY 195

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY--VQNG 221
            R +FD M  ++V+S  ++ISGY   G    A+ +F ++  +DV  + AM+ GY  V   
Sbjct: 196 GRTVFDVMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEY 255

Query: 222 MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS--------WN 273
            +     + D M + N     +  A  + +  +  A E+ E + ++ + +         +
Sbjct: 256 AMRSLEVYID-MQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGS 314

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GES 332
            +I  Y + G +  A+++FD M +++  SW ++I GY + G  +EAL +F +++ +   +
Sbjct: 315 ALIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSIT 374

Query: 333 LNRSTFSCALSTCADIAALELGKQI 357
            N  TF  AL+ CA    +E G +I
Sbjct: 375 PNFVTFLSALTACAHAGLVERGWEI 399



 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 165/378 (43%), Gaps = 71/378 (18%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP-------------------- 48
           A +VF+ +  R+  +YN MI GYL+N +   + DLF ++                     
Sbjct: 91  ARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPDGFTFSMILKASTN 150

Query: 49  -----------------------QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVS 85
                                  ++D V    ++  YV+N R+G  R +FD M +K+V+S
Sbjct: 151 RVSNGMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNGRVGYGRTVFDVMSEKNVIS 210

Query: 86  WNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL 145
             +++SGY   G+ D+A  +F +   K+ + +N ++  Y      E A R  +   D + 
Sbjct: 211 STSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVS--EYAMRSLEVYIDMQR 268

Query: 146 ISWNCLMGGFVKRKMLGAARKL------------FDKMHVRDVVSWNT-MISGYAQDGDM 192
           +++   +  F    ++GA   L              K     V+   + +I  Y++ G +
Sbjct: 269 LNFRPNLSTFA--SIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGSALIDMYSKCGRV 326

Query: 193 SQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-----QKNEISYNAMVAG 247
             A+ +FD    ++VF+WT+M+ GY +NG  DEA   F +M        N +++ + +  
Sbjct: 327 IDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPNFVTFLSALTA 386

Query: 248 YVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMPQR-DCV 301
              +  ++   E+F++M S       +  +  M+   G+ G + QA +    MP+R +  
Sbjct: 387 CAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQAWEFVTRMPERPNSD 446

Query: 302 SWAAIISGYAQTGHYEEA 319
            W A++S     G+ E A
Sbjct: 447 VWLALLSSCRIHGNIEMA 464



 Score = 89.7 bits (221), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 26/319 (8%)

Query: 31  YLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----QKDVVSW 86
           Y+++     AR +FD +  R L ++N M+ GY++N ++ ++  LF  +     + D  ++
Sbjct: 82  YIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPDGFTF 141

Query: 87  NAML---SGYAQNG-YADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLFD 138
           + +L   +    NG   D  R V  Q+      K+ +    L+ +YV NGR+     +FD
Sbjct: 142 SMILKASTNRVSNGMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNGRVGYGRTVFD 201

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGD--MSQAK 196
             S+  +IS   L+ G++ +     A  +F K   +DVV +N MI GY++  +  M   +
Sbjct: 202 VMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAMRSLE 261

Query: 197 NLFDQS-----PHQDVF-TWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY-NAMVAGYV 249
              D       P+   F +     S      + ++ +    + P    I   +A++  Y 
Sbjct: 262 VYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGSALIDMYS 321

Query: 250 QSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP-----QRDCVSWA 304
           +  ++  A+ +F+ M  +NV SW +MI GYG+NG   +A +LF  M        + V++ 
Sbjct: 322 KCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPNFVTFL 381

Query: 305 AIISGYAQTGHYEEALNMF 323
           + ++  A  G  E    +F
Sbjct: 382 SALTACAHAGLVERGWEIF 400



 Score = 60.8 bits (146), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G++IH  ++KTG+     +   LL +Y K  S+  A  VF+ + ++ + ++N MI GY +
Sbjct: 56  GQKIHSHILKTGFVPNTNISIKLLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLK 115

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH---AGLIDRGTEYFYSMNKDYSVTP 470
           +G   ++L +F  +   G KPD  T   +L A ++    G++       ++    + V  
Sbjct: 116 NGQVDESLDLFHQLSVSGEKPDGFTFSMILKASTNRVSNGMVGDLGRMVHAQILKFDVEK 175

Query: 471 SSKHYTCMIDLLGRAGRL 488
                T +ID   + GR+
Sbjct: 176 DDVLCTALIDSYVKNGRV 193


>Medtr3g026690.1 | PPR containing plant-like protein | HC |
           chr3:8195048-8190900 | 20130731
          Length = 944

 Score =  292 bits (748), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 182/609 (29%), Positives = 299/609 (49%), Gaps = 39/609 (6%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWN----- 56
           + G   SA RVF+ M  R  VS+  M++GY++N  +     L  KM +R  V  N     
Sbjct: 245 KCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKM-RRGNVKMNKVAVV 303

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
             L      R L   + +++   Q     D+V    ++  YA+ G   +ARE+F  +  +
Sbjct: 304 NALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGR 363

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDS------KSDWELISWNCLMGGFVKRKMLGAARK 166
           + ++W+  L+A V  G   E   +F        K D  ++S   L+ G  +   +G  + 
Sbjct: 364 DLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILS--ILVSGCTEISNIGLGKI 421

Query: 167 LFDKMHV--------RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYV 218
               MH          D+    T++S Y +    + A  LF++   +D+  W  +++G+ 
Sbjct: 422 ----MHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFT 477

Query: 219 QNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS----NKMDMARELFEAMPSRNVSS--- 271
           + G    A   F+++     +  +  + G   +    + +D+   L   +      S   
Sbjct: 478 KYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIH 537

Query: 272 -WNTMITGYGQNGDIAQARKLFDMMPQ-RDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
               ++  Y + G +    +LF +    +D VSW  +I+GY   G+  EA++ F  +K +
Sbjct: 538 VKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLE 597

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEA 389
               N  TF   L   + ++ L      H  +++ G+ +   +GN+L+ MY KCG +  +
Sbjct: 598 NVRPNLVTFVTILPAVSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYS 657

Query: 390 NDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHA 449
              F  +E KD +SWN M++ YA HG G+ A+ +F  M+   V+ D ++ + VLSAC H+
Sbjct: 658 EKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHS 717

Query: 450 GLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGA 509
           GLI  G + F SM + + V PS +HY CM+DLLG AG  +E   L+  M  EP A  WGA
Sbjct: 718 GLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGA 777

Query: 510 LLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGV 569
           LL A +IH N  LGE A   + K+EP N   +V+LS++YA  GRW DA   RS + + G+
Sbjct: 778 LLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGL 837

Query: 570 QKVTGYSWV 578
           +K+ GYSWV
Sbjct: 838 KKIPGYSWV 846



 Score =  182 bits (463), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/545 (26%), Positives = 258/545 (47%), Gaps = 29/545 (5%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNVML 59
           G  D+A  VF+ MP +  V +NAMISG  ++     A ++F +M     + D VS   + 
Sbjct: 148 GCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLA 207

Query: 60  TGYVRNRRLGDARRLFDSMPQKDV--VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISW 117
               R   +G  + +   + ++ +  V  N+++  Y + G    A+ VF +M  ++ +SW
Sbjct: 208 PAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSW 267

Query: 118 NGLLAAYVHNGRIEEACRLFDS--KSDWELISWNCLMGGFVKRKM--LGAARKLFDKM-- 171
             ++A YV NG   E  +L     + + ++     +    V  +M  L   +++++    
Sbjct: 268 ATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQ 327

Query: 172 --HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
              + D+V    ++  YA+ G++ +A+ LF     +D+  W+A +S  V+ G   E  + 
Sbjct: 328 MGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSI 387

Query: 230 FDQM------PQKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGY 279
           F  M      P K  +S   +V+G  + + + + + +     +A    ++S   T+++ Y
Sbjct: 388 FQVMQYEGLKPDKAILS--ILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMY 445

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            +      A  LF+ M  +D V W  +I+G+ + G    AL MF  ++  G   +  T  
Sbjct: 446 IRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMV 505

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE- 398
              S CA +  L+LG  +HG + K+G+E+   V  AL+ MY KCGS+     +F   +  
Sbjct: 506 GLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHV 565

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
           KD VSWN MIAGY  +G+  +A+  F  MK   V+P+ +T V +L A S+  ++ R    
Sbjct: 566 KDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSIL-REAMA 624

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           F++          +     +ID+  + G+L  ++     M       SW A+L A  +HG
Sbjct: 625 FHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEME-NKDTISWNAMLSAYAMHG 683

Query: 519 NTELG 523
             EL 
Sbjct: 684 QGELA 688



 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 196/436 (44%), Gaps = 52/436 (11%)

Query: 145 LISWNCLMGGFVKRKMLGAARKLFD---KMHVR-DVVSWNTMISGYAQDGDMSQAKNLFD 200
           LI +N  +  + K      A  L+    K+ ++ D  ++N ++       D  +  N++ 
Sbjct: 64  LILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYK 123

Query: 201 QSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM 256
                    DV+  T+++  + + G LD AR  FD+MP K+ + +NAM++G  QS     
Sbjct: 124 DIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCE 183

Query: 257 ARELF-----EAMPSRNVSSWN--------------------------------TMITGY 279
           A E+F     E      VS  N                                ++I  Y
Sbjct: 184 ALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMY 243

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
            + GD+  A+++FD M  RD VSWA +++GY + G Y E L +  +++R    +N+    
Sbjct: 244 CKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVV 303

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK 399
            AL   A++  LE GK+I+   ++ G  +   V   ++ MY KCG + +A ++F  +E +
Sbjct: 304 NALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGR 363

Query: 400 DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG-TEY 458
           D+V+W+  ++     G+ ++ L +F+ M+  G+KPD+  +  ++S C+    I  G   +
Sbjct: 364 DLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMH 423

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
            Y++  D     S    T ++ +  R      A  L   M  +     W  L+     +G
Sbjct: 424 CYAIKADMESDISM--VTTLVSMYIRFELFTYAMTLFNRMQIKDIVV-WNTLINGFTKYG 480

Query: 519 NTELGEKAAEMVFKME 534
           +  L   A EM  +++
Sbjct: 481 DPHL---ALEMFNRLQ 493



 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 114/259 (44%), Gaps = 10/259 (3%)

Query: 257 ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHY 316
              +F      N + +  +I        + Q    F  +     + + + I  Y++  H+
Sbjct: 21  THHIFPIQQQNNNNHYLKLINSCKYINPLLQIHTHFLQIKNPSLILYNSFIKAYSKFHHF 80

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
            +A+N++  I + G   ++ TF+  L  C        G  I+  +V  G E   ++G +L
Sbjct: 81  HKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSL 140

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           + M+ K G +  A +VF+ +  KD V WN MI+G ++     +AL +F  M+  G + D+
Sbjct: 141 IDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDK 200

Query: 437 ITMVGVLSACSHAGLIDRG---TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQD 493
           ++++ +  A S  G  D G   + + Y + +      S+     +ID+  + G +  AQ 
Sbjct: 201 VSILNLAPAVSRLG--DVGCCKSIHGYVVRRSICGVVSNS----LIDMYCKCGDVHSAQR 254

Query: 494 LMRNMPFEPPAASWGALLG 512
           +   M       SW  ++ 
Sbjct: 255 VFDRMGVRDD-VSWATMMA 272


>Medtr4g074150.2 | PPR containing plant-like protein | HC |
           chr4:28198214-28202779 | 20130731
          Length = 606

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 250/468 (53%), Gaps = 20/468 (4%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
            D    N  IS +   G M  A  +FD+SP +D+  WTA+++G+V+NG+  EA   F +M
Sbjct: 139 HDCFVCNGFISAFGCSGFMKNACKVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEM 198

Query: 234 PQKNEISYNAMVAGYVQSNKMD----MAREL--FEAMPSRNV---SSWNTMITGYGQNGD 284
             K  +     VA  +++  +       + +  F     R V   S +  ++  Y + G 
Sbjct: 199 RLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGY 258

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
              A K+FD MP RD V+W  +++G+ Q   Y++AL+ F  +  D    N  T +  LS 
Sbjct: 259 CEDACKVFDEMPYRDVVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVVPNEFTLTSVLSA 318

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           CA + AL+ G+ +H  +          +G +L+ MY KCG + +A  VFE ++ K+V +W
Sbjct: 319 CAHVGALDQGRLVHRYMEHNDCNLNAVLGTSLVDMYAKCGCVDKALMVFENLQVKNVHTW 378

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
             MI G A HG    AL +F  M   G++P+++T +GVL ACSH G +D G + F  M  
Sbjct: 379 TAMINGLAVHGDALGALNIFSRMLESGLRPNDVTFLGVLGACSHGGFVDEGKKLFEMMRH 438

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE 524
            Y + P+ +HY CM+DLLGRAG LE+A+ ++ NMP +P     GALLGA   H +  +GE
Sbjct: 439 TYHLKPNMEHYGCMVDLLGRAGCLEDAKQIIDNMPMKPSPGVLGALLGACVSHKDFVMGE 498

Query: 525 KAAEMVFKMEP-HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNK 583
               ++  ++  HN+G Y LL+NLY+    W     +R  M+   V+K  GYSW+EV   
Sbjct: 499 HIGNILVNLQQNHNTG-YALLANLYSTCQNWEAVARVRKLMKGTQVEKTPGYSWIEVAGS 557

Query: 584 IHKFTVGDCFHPEKDRIYAFLEELDLKMR-------REGY--VSSTKL 622
           +H+F   D  H E   +Y  LE L L+M+        EG+  VSST +
Sbjct: 558 MHEFKAFDHSHSEFSCVYLMLENLILQMKMVDQAQWNEGFDLVSSTDV 605



 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 184/428 (42%), Gaps = 66/428 (15%)

Query: 32  LRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLS 91
           L   + S  R L + +   +   +N ++T + +   L  A+ + +   Q D  ++  +L 
Sbjct: 54  LSQPQTSSLRLLLNTIHTPNTRLFNKLITSFPKTTLLSYAK-MHEMGVQPDKHTFPLLLK 112

Query: 92  GYAQNGYADEA------REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL 145
            +++NG  ++        +VF      +    NG ++A+  +G ++ AC++FD   + ++
Sbjct: 113 IFSKNGVPNDHLPFMVYAQVFKLGFDHDCFVCNGFISAFGCSGFMKNACKVFDESPERDI 172

Query: 146 ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV---------------------------- 177
           ++W  L+ GFVK  + G A + F +M ++ VV                            
Sbjct: 173 VAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGF 232

Query: 178 ------------SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
                        +  ++  Y + G    A  +FD+ P++DV  WT +V+G+VQ     +
Sbjct: 233 YVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDEMPYRDVVAWTVVVAGFVQCKKYQD 292

Query: 226 ARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMIT 277
           A +FF +M       NE +  ++++       +D  R +   M     + N     +++ 
Sbjct: 293 ALSFFRRMLLDNVVPNEFTLTSVLSACAHVGALDQGRLVHRYMEHNDCNLNAVLGTSLVD 352

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
            Y + G + +A  +F+ +  ++  +W A+I+G A  G    ALN+F  +   G   N  T
Sbjct: 353 MYAKCGCVDKALMVFENLQVKNVHTWTAMINGLAVHGDALGALNIFSRMLESGLRPNDVT 412

Query: 338 FSCALSTCADIAALELGKQI-----HGQVVKTGYE-TGCFVGNALLGMYFKCGSIGEAND 391
           F   L  C+    ++ GK++     H   +K   E  GC V   LLG   + G + +A  
Sbjct: 413 FLGVLGACSHGGFVDEGKKLFEMMRHTYHLKPNMEHYGCMVD--LLG---RAGCLEDAKQ 467

Query: 392 VFEGIEEK 399
           + + +  K
Sbjct: 468 IIDNMPMK 475



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 29  SGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV---- 84
           SG+++NA       +FD+ P+RD+V+W  ++ G+V+N   G+A R F  M  K VV    
Sbjct: 154 SGFMKNAC-----KVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGF 208

Query: 85  SWNAMLSGYAQNGYADEAREV--FYQMPHKNAIS---WNGLLAAYVHNGRIEEACRLFDS 139
           +  ++L   A  G     + V  FY    +  +    +  L+  Y   G  E+AC++FD 
Sbjct: 209 TVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDE 268

Query: 140 KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF 199
               ++++W  ++ GFV+ K    A   F +M + +VV                      
Sbjct: 269 MPYRDVVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVV---------------------- 306

Query: 200 DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNA-----MVAGYVQSNKM 254
              P++  FT T+++S     G LD+ R     M + N+ + NA     +V  Y +   +
Sbjct: 307 ---PNE--FTLTSVLSACAHVGALDQGRLVHRYM-EHNDCNLNAVLGTSLVDMYAKCGCV 360

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC----VSWAAIISGY 310
           D A  +FE +  +NV +W  MI G   +GD   A  +F  M +       V++  ++   
Sbjct: 361 DKALMVFENLQVKNVHTWTAMINGLAVHGDALGALNIFSRMLESGLRPNDVTFLGVLGAC 420

Query: 311 AQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQI 357
           +  G  +E   +F E+ R    L  N   + C +        LE  KQI
Sbjct: 421 SHGGFVDEGKKLF-EMMRHTYHLKPNMEHYGCMVDLLGRAGCLEDAKQI 468



 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 148/323 (45%), Gaps = 28/323 (8%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGY 62
           +G   +A +VF+  P R  V++ A+I+G+++N     A   F +M  + +V     +   
Sbjct: 154 SGFMKNACKVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGFTVASV 213

Query: 63  VRNRRL-GD---ARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           +R   L GD    +R+     +      D   + A++  Y + GY ++A +VF +MP+++
Sbjct: 214 LRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDEMPYRD 273

Query: 114 AISWNGLLAAYVHNGRIEEACRLF-----DSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
            ++W  ++A +V   + ++A   F     D+    E  +   ++        L   R + 
Sbjct: 274 VVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVVPNEF-TLTSVLSACAHVGALDQGRLVH 332

Query: 169 DKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
             M   D     V   +++  YA+ G + +A  +F+    ++V TWTAM++G   +G   
Sbjct: 333 RYMEHNDCNLNAVLGTSLVDMYAKCGCVDKALMVFENLQVKNVHTWTAMINGLAVHGDAL 392

Query: 225 EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM-----PSRNVSSWNTM 275
            A   F +M +     N++++  ++        +D  ++LFE M        N+  +  M
Sbjct: 393 GALNIFSRMLESGLRPNDVTFLGVLGACSHGGFVDEGKKLFEMMRHTYHLKPNMEHYGCM 452

Query: 276 ITGYGQNGDIAQARKLFDMMPQR 298
           +   G+ G +  A+++ D MP +
Sbjct: 453 VDLLGRAGCLEDAKQIIDNMPMK 475



 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%)

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGF 416
           ++ QV K G++  CFV N  +  +   G +  A  VF+   E+D+V+W  +I G+ ++G 
Sbjct: 128 VYAQVFKLGFDHDCFVCNGFISAFGCSGFMKNACKVFDESPERDIVAWTALINGFVKNGV 187

Query: 417 GKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYT 476
             +AL  F  M+  GV  D  T+  VL A +  G    G        +   V      Y 
Sbjct: 188 PGEALRCFVEMRLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYC 247

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
            ++D+  + G  E+A  +   MP+    A
Sbjct: 248 ALVDMYFKCGYCEDACKVFDEMPYRDVVA 276


>Medtr4g074150.1 | PPR containing plant-like protein | HC |
           chr4:28198256-28202779 | 20130731
          Length = 606

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/468 (35%), Positives = 250/468 (53%), Gaps = 20/468 (4%)

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
            D    N  IS +   G M  A  +FD+SP +D+  WTA+++G+V+NG+  EA   F +M
Sbjct: 139 HDCFVCNGFISAFGCSGFMKNACKVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEM 198

Query: 234 PQKNEISYNAMVAGYVQSNKMD----MAREL--FEAMPSRNV---SSWNTMITGYGQNGD 284
             K  +     VA  +++  +       + +  F     R V   S +  ++  Y + G 
Sbjct: 199 RLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGY 258

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
              A K+FD MP RD V+W  +++G+ Q   Y++AL+ F  +  D    N  T +  LS 
Sbjct: 259 CEDACKVFDEMPYRDVVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVVPNEFTLTSVLSA 318

Query: 345 CADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
           CA + AL+ G+ +H  +          +G +L+ MY KCG + +A  VFE ++ K+V +W
Sbjct: 319 CAHVGALDQGRLVHRYMEHNDCNLNAVLGTSLVDMYAKCGCVDKALMVFENLQVKNVHTW 378

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
             MI G A HG    AL +F  M   G++P+++T +GVL ACSH G +D G + F  M  
Sbjct: 379 TAMINGLAVHGDALGALNIFSRMLESGLRPNDVTFLGVLGACSHGGFVDEGKKLFEMMRH 438

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGE 524
            Y + P+ +HY CM+DLLGRAG LE+A+ ++ NMP +P     GALLGA   H +  +GE
Sbjct: 439 TYHLKPNMEHYGCMVDLLGRAGCLEDAKQIIDNMPMKPSPGVLGALLGACVSHKDFVMGE 498

Query: 525 KAAEMVFKMEP-HNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNK 583
               ++  ++  HN+G Y LL+NLY+    W     +R  M+   V+K  GYSW+EV   
Sbjct: 499 HIGNILVNLQQNHNTG-YALLANLYSTCQNWEAVARVRKLMKGTQVEKTPGYSWIEVAGS 557

Query: 584 IHKFTVGDCFHPEKDRIYAFLEELDLKMR-------REGY--VSSTKL 622
           +H+F   D  H E   +Y  LE L L+M+        EG+  VSST +
Sbjct: 558 MHEFKAFDHSHSEFSCVYLMLENLILQMKMVDQAQWNEGFDLVSSTDV 605



 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 184/428 (42%), Gaps = 66/428 (15%)

Query: 32  LRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLS 91
           L   + S  R L + +   +   +N ++T + +   L  A+ + +   Q D  ++  +L 
Sbjct: 54  LSQPQTSSLRLLLNTIHTPNTRLFNKLITSFPKTTLLSYAK-MHEMGVQPDKHTFPLLLK 112

Query: 92  GYAQNGYADEA------REVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWEL 145
            +++NG  ++        +VF      +    NG ++A+  +G ++ AC++FD   + ++
Sbjct: 113 IFSKNGVPNDHLPFMVYAQVFKLGFDHDCFVCNGFISAFGCSGFMKNACKVFDESPERDI 172

Query: 146 ISWNCLMGGFVKRKMLGAARKLFDKMHVRDVV---------------------------- 177
           ++W  L+ GFVK  + G A + F +M ++ VV                            
Sbjct: 173 VAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGF 232

Query: 178 ------------SWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
                        +  ++  Y + G    A  +FD+ P++DV  WT +V+G+VQ     +
Sbjct: 233 YVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDEMPYRDVVAWTVVVAGFVQCKKYQD 292

Query: 226 ARTFFDQM----PQKNEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMIT 277
           A +FF +M       NE +  ++++       +D  R +   M     + N     +++ 
Sbjct: 293 ALSFFRRMLLDNVVPNEFTLTSVLSACAHVGALDQGRLVHRYMEHNDCNLNAVLGTSLVD 352

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
            Y + G + +A  +F+ +  ++  +W A+I+G A  G    ALN+F  +   G   N  T
Sbjct: 353 MYAKCGCVDKALMVFENLQVKNVHTWTAMINGLAVHGDALGALNIFSRMLESGLRPNDVT 412

Query: 338 FSCALSTCADIAALELGKQI-----HGQVVKTGYE-TGCFVGNALLGMYFKCGSIGEAND 391
           F   L  C+    ++ GK++     H   +K   E  GC V   LLG   + G + +A  
Sbjct: 413 FLGVLGACSHGGFVDEGKKLFEMMRHTYHLKPNMEHYGCMVD--LLG---RAGCLEDAKQ 467

Query: 392 VFEGIEEK 399
           + + +  K
Sbjct: 468 IIDNMPMK 475



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 54/349 (15%)

Query: 29  SGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV---- 84
           SG+++NA       +FD+ P+RD+V+W  ++ G+V+N   G+A R F  M  K VV    
Sbjct: 154 SGFMKNAC-----KVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGF 208

Query: 85  SWNAMLSGYAQNGYADEAREV--FYQMPHKNAIS---WNGLLAAYVHNGRIEEACRLFDS 139
           +  ++L   A  G     + V  FY    +  +    +  L+  Y   G  E+AC++FD 
Sbjct: 209 TVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDE 268

Query: 140 KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF 199
               ++++W  ++ GFV+ K    A   F +M + +VV                      
Sbjct: 269 MPYRDVVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVV---------------------- 306

Query: 200 DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNA-----MVAGYVQSNKM 254
              P++  FT T+++S     G LD+ R     M + N+ + NA     +V  Y +   +
Sbjct: 307 ---PNE--FTLTSVLSACAHVGALDQGRLVHRYM-EHNDCNLNAVLGTSLVDMYAKCGCV 360

Query: 255 DMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC----VSWAAIISGY 310
           D A  +FE +  +NV +W  MI G   +GD   A  +F  M +       V++  ++   
Sbjct: 361 DKALMVFENLQVKNVHTWTAMINGLAVHGDALGALNIFSRMLESGLRPNDVTFLGVLGAC 420

Query: 311 AQTGHYEEALNMFIEIKRDGESL--NRSTFSCALSTCADIAALELGKQI 357
           +  G  +E   +F E+ R    L  N   + C +        LE  KQI
Sbjct: 421 SHGGFVDEGKKLF-EMMRHTYHLKPNMEHYGCMVDLLGRAGCLEDAKQI 468



 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 148/323 (45%), Gaps = 28/323 (8%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGY 62
           +G   +A +VF+  P R  V++ A+I+G+++N     A   F +M  + +V     +   
Sbjct: 154 SGFMKNACKVFDESPERDIVAWTALINGFVKNGVPGEALRCFVEMRLKGVVIDGFTVASV 213

Query: 63  VRNRRL-GD---ARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           +R   L GD    +R+     +      D   + A++  Y + GY ++A +VF +MP+++
Sbjct: 214 LRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYCALVDMYFKCGYCEDACKVFDEMPYRD 273

Query: 114 AISWNGLLAAYVHNGRIEEACRLF-----DSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
            ++W  ++A +V   + ++A   F     D+    E  +   ++        L   R + 
Sbjct: 274 VVAWTVVVAGFVQCKKYQDALSFFRRMLLDNVVPNEF-TLTSVLSACAHVGALDQGRLVH 332

Query: 169 DKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLD 224
             M   D     V   +++  YA+ G + +A  +F+    ++V TWTAM++G   +G   
Sbjct: 333 RYMEHNDCNLNAVLGTSLVDMYAKCGCVDKALMVFENLQVKNVHTWTAMINGLAVHGDAL 392

Query: 225 EARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM-----PSRNVSSWNTM 275
            A   F +M +     N++++  ++        +D  ++LFE M        N+  +  M
Sbjct: 393 GALNIFSRMLESGLRPNDVTFLGVLGACSHGGFVDEGKKLFEMMRHTYHLKPNMEHYGCM 452

Query: 276 ITGYGQNGDIAQARKLFDMMPQR 298
           +   G+ G +  A+++ D MP +
Sbjct: 453 VDLLGRAGCLEDAKQIIDNMPMK 475



 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%)

Query: 357 IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGF 416
           ++ QV K G++  CFV N  +  +   G +  A  VF+   E+D+V+W  +I G+ ++G 
Sbjct: 128 VYAQVFKLGFDHDCFVCNGFISAFGCSGFMKNACKVFDESPERDIVAWTALINGFVKNGV 187

Query: 417 GKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYT 476
             +AL  F  M+  GV  D  T+  VL A +  G    G        +   V      Y 
Sbjct: 188 PGEALRCFVEMRLKGVVIDGFTVASVLRAAALVGDYCFGKRVHGFYVETGRVVLDGSVYC 247

Query: 477 CMIDLLGRAGRLEEAQDLMRNMPFEPPAA 505
            ++D+  + G  E+A  +   MP+    A
Sbjct: 248 ALVDMYFKCGYCEDACKVFDEMPYRDVVA 276


>Medtr5g043450.1 | PPR containing plant-like protein | HC |
           chr5:19108134-19105482 | 20130731
          Length = 828

 Score =  291 bits (746), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 187/644 (29%), Positives = 318/644 (49%), Gaps = 50/644 (7%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVML------TGY 62
           A +VF+ M  R  V ++++IS Y+ N  +    ++F  M    +   +VML       G 
Sbjct: 156 AKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGK 215

Query: 63  VRNRRLGDARRLF---DSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNG 119
           +   RL  +   +   + M     +S N+++  Y+Q GY   A+ +F  +  ++   W  
Sbjct: 216 IGCLRLAKSVHGYVMREGMVGDGSLS-NSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTS 274

Query: 120 LLAAYVHNGRIEEACRLFDSKSDWEL---------ISWNCLMGGFVKRKMLGAARKLFDK 170
           +++AY  N   EEA  +F    D E+         +  +C   G +K         L + 
Sbjct: 275 MISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNA 334

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
           M V  +     +I  Y+    MS  + L     ++++ +W  ++S Y + G+ DEA  FF
Sbjct: 335 MGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFF 394

Query: 231 DQMPQKN-------------------EISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS 271
             M  K                     I +   + G+V      M R  F+         
Sbjct: 395 ACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHV------MKRGFFDEFVQ----- 443

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
            N+++  Y + G  + A  +F+ +  +  V+W  +I G++Q G   EAL++F E+ ++  
Sbjct: 444 -NSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRL 502

Query: 332 SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
            +N+ TF  A+  C+++  L+ GK IH +++ TG +   ++  AL+ MY KCG +  A  
Sbjct: 503 EINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQK 562

Query: 392 VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGL 451
           VF+ I EK VVSW+TMIA +  HG    A  +F  M    +KP+E+T + +LSAC HAG 
Sbjct: 563 VFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGS 622

Query: 452 IDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           +  G  YF +M   Y + P+ +H+  ++DLL RAG +  A ++++++     A+ WGALL
Sbjct: 623 VKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALL 682

Query: 512 GASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
              RI+G  ++ E  AE +  +   ++G Y LLSN+YA  G W ++  +RS+M  +G++K
Sbjct: 683 NGCRIYGRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKK 742

Query: 572 VTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREG 615
           V GYS VE+  KI++F  GD    +   I  FLE      + +G
Sbjct: 743 VPGYSTVEIDRKIYRFGSGDTSEWQMKEICMFLENFQSLAQEQG 786



 Score =  163 bits (412), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 254/548 (46%), Gaps = 41/548 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFD-------KMPQRDLVSWN 56
           G   S+  VF T P   S  ++ +I  +L N  F     LF+       K+ Q     + 
Sbjct: 47  GSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYP 106

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQ----KDVVSWNAMLSGYAQNGYADEAREVFYQMPHK 112
            ++        L   R+L   + +    +D V   +++  Y +  +  +A++VF +M  +
Sbjct: 107 SVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVR 166

Query: 113 NAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKM--LGAARKLFDK 170
           + + W+ +++ YV NG   E   +F S    E I  + +M   V      +G  R L   
Sbjct: 167 DLVLWSSIISCYVENGVYREGLEMFRSMI-CEGIRPDSVMLLSVAEACGKIGCLR-LAKS 224

Query: 171 MH--------VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGM 222
           +H        V D    N++I  Y+Q G + +AK LF+    +    WT+M+S Y QN  
Sbjct: 225 VHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNEC 284

Query: 223 LDEARTFFDQMPQKNEISYN--AMVA--------GYVQSNKMDMARELFEAMPSRNVSSW 272
            +EA   F +M Q +E+  N   M++        G ++  K      L  AM    +   
Sbjct: 285 FEEALDVFIKM-QDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLG 343

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
             +I  Y     ++   KL   +   + VSW  +IS YA+ G  +EA+  F  +   G  
Sbjct: 344 PALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIM 403

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            +  + + ++S  A   +++ G+QIHG V+K G+    FV N+L+ MY KCG    A  +
Sbjct: 404 PDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDE-FVQNSLMDMYSKCGFASSAYTI 462

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F  I+ K +V+WN MI G++++G   +AL +F+ M    ++ +++T +  + ACS+ G +
Sbjct: 463 FNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYL 522

Query: 453 DRGTEYFYSMNKDYSVTPSSKHY--TCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
           D+G    +  +K       +  Y  T ++D+  + G L+ AQ +  ++  E    SW  +
Sbjct: 523 DKGK---WIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSI-VEKSVVSWSTM 578

Query: 511 LGASRIHG 518
           + A  IHG
Sbjct: 579 IAAHGIHG 586



 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 172/368 (46%), Gaps = 22/368 (5%)

Query: 89  MLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW-ELIS 147
           +L  Y+Q G    +R VFY  P  ++  ++ L+  ++ N    E   LF+        ++
Sbjct: 39  LLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLT 98

Query: 148 WNC-LMGGFVKRKMLGAARKLFD-KMHVR--------DVVSWNTMISGYAQDGDMSQAKN 197
            NC  +   V R + G    +   K+H R        D V   +++  Y +   +  AK 
Sbjct: 99  QNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKK 158

Query: 198 LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQKNEISYNAMVAGYVQS 251
           +FD+   +D+  W++++S YV+NG+  E    F  M      P    +   A   G +  
Sbjct: 159 VFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGC 218

Query: 252 NKMDMARELF---EAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
            ++  +   +   E M      S N++I  Y Q G + +A++LF+ +  R    W ++IS
Sbjct: 219 LRLAKSVHGYVMREGMVGDGSLS-NSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMIS 277

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-E 367
            Y Q   +EEAL++FI+++      N  T    L++CA +  L+ GK +H  V++     
Sbjct: 278 AYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGV 337

Query: 368 TGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESM 427
           TG  +G AL+  Y  C  +     +   I  +++VSWNT+I+ YAR G   +A+  F  M
Sbjct: 338 TGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACM 397

Query: 428 KTIGVKPD 435
              G+ PD
Sbjct: 398 VAKGIMPD 405



 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 160/341 (46%), Gaps = 12/341 (3%)

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFD-------QMP 234
           ++  Y+Q G +  ++ +F   P  D F ++ ++  ++ N +  E  + F+       ++ 
Sbjct: 39  LLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLT 98

Query: 235 QKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
           Q     Y +++       ++ + R+L     ++    +     +++  YG+   +  A+K
Sbjct: 99  QNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKK 158

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +FD M  RD V W++IIS Y + G Y E L MF  +  +G   +          C  I  
Sbjct: 159 VFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGC 218

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
           L L K +HG V++ G      + N+L+ MY +CG +  A  +FE I+++    W +MI+ 
Sbjct: 219 LRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISA 278

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP 470
           Y ++   ++AL VF  M+   V+P+++TM+ VL++C+  G +  G      + ++     
Sbjct: 279 YNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVT 338

Query: 471 SSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
                  +ID      ++   + L+ ++  E    SW  L+
Sbjct: 339 GLDLGPALIDFYSACWKMSSCEKLLHSIGNE-NIVSWNTLI 378


>Medtr1g040705.2 | PPR containing plant-like protein | HC |
           chr1:15076230-15082956 | 20130731
          Length = 613

 Score =  291 bits (746), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 213/366 (58%), Gaps = 9/366 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C     LE  K +H  V++          N +L MYF+CGS+ +A +VF+ + E+D+
Sbjct: 257 MQLCGKAEFLEEAKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMNERDL 316

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +   MI   A++GF + ++ +F   K  G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 317 TTIYIMIKQLAKNGFAEDSIDLFTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFES 376

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M++DY + P+ +HY  ++D++G  G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 377 MSRDYEIVPTMEHYVSIVDMIGSIGNLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTE 436

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P        +S L   +             ++    K    + V   
Sbjct: 437 LGDRCAELVEKLDPSRLNEKSKVSLLLIETSDIT---------KNKKQNKPPDNNPVGNM 487

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           N+IH++  GD   PE + IYA L  L ++M+  GY++ T+  LHDV++E+KE  L  HSE
Sbjct: 488 NRIHEYRAGDTSLPENNMIYALLRRLRVQMKEAGYIAETRFCLHDVDQEDKEDALLGHSE 547

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LA+A G+L  PA   IRVIKNLRVC DCH A+K IS +VGR  I+RD+ RFHHF  G+C
Sbjct: 548 RLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLC 607

Query: 702 SCGDYW 707
           SC DYW
Sbjct: 608 SCRDYW 613


>Medtr4g108030.1 | PPR containing plant-like protein | HC |
           chr4:44776233-44777913 | 20130731
          Length = 544

 Score =  291 bits (744), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 218/368 (59%), Gaps = 3/368 (0%)

Query: 217 YVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMI 276
           Y Q G++  AR  FDQ+   + +S+N M++ Y + +  ++A  L E MP + V SWNT+I
Sbjct: 171 YSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVISWNTLI 230

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y + GD+  AR++F  MP+R+ VSW ++I+G      Y  AL +F E++  G      
Sbjct: 231 ARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEV 290

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
           T    L  CA+  ALE+G +I+  +    ++   ++GNAL+ MY KCG++  A ++F G+
Sbjct: 291 TLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGM 350

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESM-KTIG--VKPDEITMVGVLSACSHAGLID 453
           + K V  WN M+ G A HG+ ++   +F  M +++G  ++PD +T +GVL ACSH GL+D
Sbjct: 351 KMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVD 410

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
           +   YF  M K Y + P SKHY CM+DLL R G LEEA  ++   PF+     W  LLGA
Sbjct: 411 KARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSVVLWRTLLGA 470

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            R   NTEL E + + + K++    G YVLLSN+YA +GRW +   +RS M  + V +  
Sbjct: 471 CRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQA 530

Query: 574 GYSWVEVQ 581
           GYS + ++
Sbjct: 531 GYSQINMK 538



 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 156/340 (45%), Gaps = 24/340 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A  +F+ +   S VS+N MIS Y R   + LA  L + MP + ++SWN ++  Y+
Sbjct: 175 GLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVISWNTLIARYI 234

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNG 119
           R   +  ARR+F  MP+++ VSWN+M++G         A E+F +M +       ++   
Sbjct: 235 RLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLIS 294

Query: 120 LLAAYVHNGRIEEACRLFDS----KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
           +L A    G +E   ++++S    +   E    N L+  + K   L  A ++F+ M ++ 
Sbjct: 295 ILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKT 354

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQ-------SPHQDVFTWTAMVSGYVQNGMLDEART 228
           V  WN M+ G A  G   +   LF +       S   D  T+  ++      G++D+AR 
Sbjct: 355 VSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARW 414

Query: 229 FFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAMPSRN-VSSWNTMITGYGQN 282
           +FD M ++ +I      Y  MV    +   ++ A ++    P +N V  W T++      
Sbjct: 415 YFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQ 474

Query: 283 GDIAQARKLFDMMPQRDCV---SWAAIISGYAQTGHYEEA 319
            +   A   F  + +   +    +  + + YA+ G ++E 
Sbjct: 475 SNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEV 514



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 27/328 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  Y +    S+AR LFD++    LVSWN+M++ Y R      A  L + MP K V+
Sbjct: 165 NSLLYFYSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVI 224

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD------ 138
           SWN +++ Y + G    AR VF  MP +NA+SWN ++A  V       A  LF       
Sbjct: 225 SWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG 284

Query: 139 -SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV--RDVVSW--NTMISGYAQDGDMS 193
              ++  LIS   ++G   +   L    K+++ + V    + S+  N +++ Y + G++S
Sbjct: 285 VKPTEVTLIS---ILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLS 341

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK-------NEISYNAMVA 246
            A  +F+    + V  W AMV G   +G  +E    F +M +        + +++  ++ 
Sbjct: 342 LAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLV 401

Query: 247 GYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDC 300
                  +D AR  F+ M  R     +   +  M+    + G + +A ++    P Q   
Sbjct: 402 ACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSV 461

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKR 328
           V W  ++       + E A   F ++ +
Sbjct: 462 VLWRTLLGACRTQSNTELAEISFKQLAK 489



 Score = 94.0 bits (232), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 130/298 (43%), Gaps = 24/298 (8%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q D    N +L  Y +   +  AR LFD +    +VSWN M+S Y +    + A  +   
Sbjct: 158 QNDPSVQNSLLYFYSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLEL 217

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           MP K  ISWN L+A Y+  G ++ A R+F    +   +SWN ++ G V  +    A +LF
Sbjct: 218 MPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 277

Query: 169 DKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQ---SPHQ-DVFTWTAMVSGYVQN 220
            +M    V    V+  +++   A+ G +     +++      H+ + +   A+V+ Y + 
Sbjct: 278 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 337

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM---------PSRNVSS 271
           G L  A   F+ M  K    +NAMV G       +   +LF  M         P R   +
Sbjct: 338 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDR--VT 395

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQR-----DCVSWAAIISGYAQTGHYEEALNMFI 324
           +  ++      G + +AR  FD M +R     D   +  ++    + G  EEA  + +
Sbjct: 396 FIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIM 453



 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 52/253 (20%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQRDLV 53
           +R G   +A RVF  MP R++VS+N+MI+G +    ++ A +LF +M        +  L+
Sbjct: 234 IRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLI 293

Query: 54  SW--------------------------------NVMLTGYVRNRRLGDARRLFDSMPQK 81
           S                                 N ++  Y +   L  A  +F+ M  K
Sbjct: 294 SILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMK 353

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHK-------NAISWNGLLAAYVHNGRIEEAC 134
            V  WNAM+ G A +GY +E  ++F +M          + +++ G+L A  H G +++A 
Sbjct: 354 TVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKAR 413

Query: 135 RLFDSKSD-WELIS----WNCLMGGFVKRKMLGAARKLFDKMHVRD-VVSWNTMISGYAQ 188
             FD     ++++     + C++    +R +L  A ++      ++ VV W T++     
Sbjct: 414 WYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAPFQNSVVLWRTLLGACRT 473

Query: 189 DGDMSQAKNLFDQ 201
             +   A+  F Q
Sbjct: 474 QSNTELAEISFKQ 486



 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 126/295 (42%), Gaps = 22/295 (7%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
           NTMI  +  +    QA  +++ M   + VS       Y          N  ++       
Sbjct: 77  NTMIRAFSHSCFPLQALLIYNQMLINNVVS-----DSYT--------CNFVLKACSRAYK 123

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
           L + + SC       +     G +IH +V+K G++    V N+LL  Y +CG +  A  +
Sbjct: 124 LIQESGSCDDDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARYL 183

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F+ I++  +VSWN MI+ Y R    + A  + E M    V    I+   +++     G +
Sbjct: 184 FDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTV----ISWNTLIARYIRLGDV 239

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
                 F  M +  +V+ +S    C + +   AG LE   + M+N   +P   +  ++LG
Sbjct: 240 QAARRVFGCMPERNAVSWNSMIAGC-VSVRDYAGALELFSE-MQNAGVKPTEVTLISILG 297

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGMYV--LLSNLYAASGRWADAGNMRSRMR 565
           A    G  E+G K  E + K+  H    Y+   L N+Y   G  + A  + + M+
Sbjct: 298 ACAETGALEIGHKIYESL-KVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMK 351


>Medtr5g042450.1 | PPR containing plant-like protein | HC |
           chr5:18668534-18660865 | 20130731
          Length = 702

 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 212/366 (57%), Gaps = 9/366 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  K +H  V++          N +L MYF+CGS+ +A +VF+ + E+D+
Sbjct: 346 MQQCGKTKSLEEAKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMTERDL 405

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +   MI   A++GF + ++ +F   K  G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 406 TTICIMIKQLAKNGFAEDSIDLFTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFES 465

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M++DY + P+ +HY  ++D++G  G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 466 MSRDYDIVPTMEHYVSLVDMIGSIGHLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTE 525

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P         S L   S             ++    K    + V   
Sbjct: 526 LGDRCAELVEKLDP---------SRLNEKSKVGLLLIETSDITKNKKQNKPPDNNPVGNM 576

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           N+IH++  GD   PE + IY  L  L ++M+  GY++ T+  LHDV++E+KE  L  HSE
Sbjct: 577 NRIHEYRAGDTSLPENNMIYVLLRRLRVQMKEAGYIAETRFCLHDVDQEDKEDALLGHSE 636

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LA+A G+L  PA   IRVIKNLRVC DCH A+K IS +VGR  I+RD+ RFHHF  G+C
Sbjct: 637 RLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLC 696

Query: 702 SCGDYW 707
           SC DYW
Sbjct: 697 SCRDYW 702


>Medtr5g042450.2 | PPR containing plant-like protein | HC |
           chr5:18668534-18660865 | 20130731
          Length = 702

 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 144/366 (39%), Positives = 212/366 (57%), Gaps = 9/366 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  K +H  V++          N +L MYF+CGS+ +A +VF+ + E+D+
Sbjct: 346 MQQCGKTKSLEEAKVVHRYVLQHLSPLKVSTCNGILEMYFQCGSVDDAVNVFKNMTERDL 405

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +   MI   A++GF + ++ +F   K  G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 406 TTICIMIKQLAKNGFAEDSIDLFTQFKRSGLKPDGQMFIGVFGACSMLGDIVEGMLHFES 465

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M++DY + P+ +HY  ++D++G  G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 466 MSRDYDIVPTMEHYVSLVDMIGSIGHLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNTE 525

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P         S L   S             ++    K    + V   
Sbjct: 526 LGDRCAELVEKLDP---------SRLNEKSKVGLLLIETSDITKNKKQNKPPDNNPVGNM 576

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           N+IH++  GD   PE + IY  L  L ++M+  GY++ T+  LHDV++E+KE  L  HSE
Sbjct: 577 NRIHEYRAGDTSLPENNMIYVLLRRLRVQMKEAGYIAETRFCLHDVDQEDKEDALLGHSE 636

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LA+A G+L  PA   IRVIKNLRVC DCH A+K IS +VGR  I+RD+ RFHHF  G+C
Sbjct: 637 RLAIAKGLLNSPARSTIRVIKNLRVCGDCHTALKIISDLVGREFIIRDAKRFHHFKNGLC 696

Query: 702 SCGDYW 707
           SC DYW
Sbjct: 697 SCRDYW 702


>Medtr4g064770.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr4:24165948-24164077 | 20130731
          Length = 550

 Score =  290 bits (743), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 175/539 (32%), Positives = 278/539 (51%), Gaps = 34/539 (6%)

Query: 54  SWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSG----YAQNGYADEAREVFYQM 109
           S+  ++  Y  +R L   ++L   +     V +N + S     Y   G    AR++F ++
Sbjct: 31  SYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKI 90

Query: 110 PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD 169
           P  N   W  L+A     G  + A  +F   S+ + ++       FV   +L A   + D
Sbjct: 91  PQTNIHRWIALIATCARCGFHDHALEVF---SEMQTLNDQKSNSVFVIPSVLKACGHVGD 147

Query: 170 KMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
           +++   V                     +   S   D F  +A++  Y + G + +AR  
Sbjct: 148 RIYGEQVHCL------------------VLKCSFEIDAFVSSALIVMYSKCGEVRDARKV 189

Query: 230 FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP----SRNVSSWNTMITGYGQNGDI 285
           FD M  K+ ++ NA+V+GY Q    + A  L E M     + NV +WN +I+G+ Q  D 
Sbjct: 190 FDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDR 249

Query: 286 AQARKLFDMM----PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
               ++F +M     + D VSW +++SG+ Q    EEA + F ++   G     +T S  
Sbjct: 250 EMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISAL 309

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           L  CA  A +  GK+IHG  +  G E   +V +AL+ MY KCG I EA  +F  + EK+ 
Sbjct: 310 LPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNT 369

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGV-KPDEITMVGVLSACSHAGLIDRGTEYFY 460
           V+ N+MI GYA HG  ++A+ +F  M+  GV K D +T    L+ACSH G I+ G   F 
Sbjct: 370 VTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFK 429

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT 520
            M + Y + P  +HY CM+DL GRAG+LEEA  ++++MP +P    WGALL A R HG+ 
Sbjct: 430 IMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHV 489

Query: 521 ELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           EL E AA+ + ++EP ++G  +LLS+LYA +G W     ++ R++   ++K+ G SW++
Sbjct: 490 ELAEVAAKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLSWID 548



 Score =  143 bits (360), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 208/468 (44%), Gaps = 76/468 (16%)

Query: 18  RRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV----MLTGYVRNRRLGDARR 73
           R    SY  +I  Y  +      + L   +     V +N+    ++T Y    +L  AR+
Sbjct: 26  RSEPESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARK 85

Query: 74  LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN-------------------- 113
           LFD +PQ ++  W A+++  A+ G+ D A EVF +M   N                    
Sbjct: 86  LFDKIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHV 145

Query: 114 ---------------------AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLM 152
                                A   + L+  Y   G + +A ++FD     +L++ N ++
Sbjct: 146 GDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVV 205

Query: 153 GGFVKRKMLGAARKLFDKMHVR----DVVSWNTMISGYAQDGDMSQAKNLF----DQSPH 204
            G+ ++ +   A  L + M +     +VV+WN +ISG+AQ  D      +F    +    
Sbjct: 206 SGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVE 265

Query: 205 QDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQKNEISYNAMVAGYVQSNKMDMAR 258
            DV +WT+++SG+VQN   +EA   F +M      P    IS  A++       ++   +
Sbjct: 266 PDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATIS--ALLPACATEARVRFGK 323

Query: 259 EL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTG 314
           E+           ++   + ++  Y + G I++AR LF  MP+++ V+  ++I GYA  G
Sbjct: 324 EIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHG 383

Query: 315 HYEEALNMFIEIKRDG-ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVG 373
             EEA+ +F +++ +G   L+  TF+ AL+ C+ +  +ELG+++     K   E  C   
Sbjct: 384 CCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRL----FKIMQEKYCIEP 439

Query: 374 N-----ALLGMYFKCGSIGEANDVFEGIEEK-DVVSWNTMIAGYARHG 415
                  ++ ++ + G + EA  + + +  K D+  W  ++A    HG
Sbjct: 440 RLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHG 487



 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 156/343 (45%), Gaps = 54/343 (15%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGY----LRNARFSLARDLFDKMPQRDLVSWNV 57
           + G    A +VF+ M  +  V+ NA++SGY    L N   SL  ++       ++V+WN 
Sbjct: 179 KCGEVRDARKVFDGMVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNA 238

Query: 58  MLTGYVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQM---- 109
           +++G+ +         +F  M     + DVVSW ++LSG+ QN   +EA + F +M    
Sbjct: 239 LISGFAQKCDREMVSEIFRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLG 298

Query: 110 --PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
             P    IS   LL A     R+         +   E+  +  ++G             +
Sbjct: 299 FCPTSATIS--ALLPACATEARV---------RFGKEIHGYALVIG-------------V 334

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEAR 227
            D ++VR     + ++  YA+ G +S+A+ LF + P ++  T  +M+ GY  +G  +EA 
Sbjct: 335 EDDLYVR-----SALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEAI 389

Query: 228 TFFDQM-----PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMIT 277
             F+QM     P+ + +++ A +        +++ + LF+ M  +      +  +  M+ 
Sbjct: 390 ELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMVD 449

Query: 278 GYGQNGDIAQARKLFDMMPQR-DCVSWAAIISGYAQTGHYEEA 319
            +G+ G + +A  +   MP + D   W A+++     GH E A
Sbjct: 450 LFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELA 492


>Medtr5g025580.1 | PPR containing plant-like protein | HC |
           chr5:10385696-10382561 | 20130731
          Length = 767

 Score =  290 bits (742), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 294/620 (47%), Gaps = 73/620 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMP----- 79
           N++IS Y +     +A  +F +M  +D+VSWN M+ GY  N  + +A  L   M      
Sbjct: 154 NSLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCF 213

Query: 80  QKDVVSWNAML----------SGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGR 129
           Q D+V+   ML           G   +GYA     V   +P +N     GL+  Y     
Sbjct: 214 QPDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRN-----GLIDMYSKCNV 268

Query: 130 IEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV---------------- 173
           +E+A  LF S +  +L+SWN ++ G+ + K    A+ LF ++                  
Sbjct: 269 VEKAELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSS 328

Query: 174 ----------RDVVSW-------------NTMISGYAQDGDMSQAKNLFDQ-SPHQDVFT 209
                     + V  W             N+++  Y   GD++   ++  + S   D+ +
Sbjct: 329 CNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIAS 388

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS--------NKMDMARELF 261
           W  ++ G V+     EA   F  M Q    +Y+++    V S        N+      L 
Sbjct: 389 WNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLA 448

Query: 262 EAMP-SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEAL 320
              P   +    N++IT Y +  DI  ARK+F      +  +W  +IS  +      EAL
Sbjct: 449 LKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSHNKESREAL 508

Query: 321 NMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMY 380
            +F  ++      N  T    LS C  I  L  GKQ+HG   + GY+   F+  AL+ +Y
Sbjct: 509 ELFRHLQFKP---NEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQNSFISAALVDLY 565

Query: 381 FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMV 440
             CG +  A  VF    +K   +WN+MIA Y  HG G++A+ +F  M  +G+K  + T V
Sbjct: 566 STCGRLDNAVKVFRH-SQKSESAWNSMIAAYGNHGNGEKAIELFHEMCDLGIKVTKSTFV 624

Query: 441 GVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF 500
            +LSACSH+GL+++G +Y+  M + Y + P ++H   ++++L R+GR++EA    + +  
Sbjct: 625 SLLSACSHSGLVNQGLQYYECMLEKYGIKPEAEHQVYVVNMLARSGRIDEAYQFTKGLQS 684

Query: 501 EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNM 560
              +  WG LL     HG  ELG+K AE +F+MEP N G Y+ L+N+Y A+G W DA ++
Sbjct: 685 NASSGVWGMLLSVCNYHGELELGKKVAEKLFEMEPQNVGYYISLANMYVAAGSWKDATDL 744

Query: 561 RSRMRDVGVQKVTGYSWVEV 580
           R  + D G++K  GYS ++V
Sbjct: 745 RQYIHDQGLRKCAGYSLIDV 764



 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 134/568 (23%), Positives = 238/568 (41%), Gaps = 98/568 (17%)

Query: 51  DLVSWNVMLTGYVR--NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           D+   N ++  Y +  +    D+  LF+ M  KDVVSWN+++ G   NG  +++   F +
Sbjct: 44  DISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRR 103

Query: 109 M----PHKNAISWNGLLAAYVHNGRIE-------EACRLFDSKSDWELISWNCLMGGFVK 157
           M       + +S +  ++A    G +        +  +L    + +  ++ N L+  + +
Sbjct: 104 MNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVA-NSLISLYSQ 162

Query: 158 RKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSP-----HQDVFTWTA 212
            + +  A  +F +M  +D+VSWN M+ GYA + ++ +A +L  +         D+ T T 
Sbjct: 163 CEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTT 222

Query: 213 MVSGYVQNGMLDEARTFF----------DQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
           M+    +  +  E RT            D +P +     N ++  Y + N ++ A  LF 
Sbjct: 223 MLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLR-----NGLIDMYSKCNVVEKAELLFH 277

Query: 263 AMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNM 322
           +    ++ SWN MI+GY QN                                +YE+A N+
Sbjct: 278 STAQIDLVSWNAMISGYSQN-------------------------------KYYEKAQNL 306

Query: 323 FIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK 382
           F E+   G++ + ST    LS+C    +L  GK +H   +K+G+     + N+L+ MY  
Sbjct: 307 FKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYIN 366

Query: 383 CGSIGEANDVF-EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-IGVKPDEITMV 440
            G +     +  E     D+ SWNT+I G  R    ++AL  F  M+       D IT+V
Sbjct: 367 SGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLV 426

Query: 441 GVLSACSHAGLIDRGTEY---------------------FYSMNKD---------YSVTP 470
            VLSA ++  L+++G                         Y   +D         +    
Sbjct: 427 NVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSIS 486

Query: 471 SSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMV 530
           +   + CMI  L       EA +L R++ F+P   +  ++L A    G    G++     
Sbjct: 487 NLCTWNCMISALSHNKESREALELFRHLQFKPNEFTIVSVLSACTRIGVLIHGKQVHGYT 546

Query: 531 FKM-EPHNSGMYVLLSNLYAASGRWADA 557
           F+     NS +   L +LY+  GR  +A
Sbjct: 547 FRYGYQQNSFISAALVDLYSTCGRLDNA 574



 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 16/193 (8%)

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           +D    + +T    +ST + +     G+ IH   +K+G      + NAL+ MY KCG + 
Sbjct: 3   KDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVN 62

Query: 388 EAND--VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSA 445
            ++   +FE +E KDVVSWN+++ G   +G  +++L  F  M     + D +++   +SA
Sbjct: 63  SSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVSLSCAISA 122

Query: 446 CSHAGLI-------DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM 498
           CS  G +        +G +  Y  N   SV  S      +I L  +   ++ A+ + R M
Sbjct: 123 CSSLGELAFGECIHGQGIKLGYKDNSFVSVANS------LISLYSQCEAVDVAETVFREM 176

Query: 499 PFEPPAASWGALL 511
            ++    SW A++
Sbjct: 177 AYK-DIVSWNAMM 188


>Medtr4g074470.1 | PPR containing plant-like protein | HC |
           chr4:28370337-28367680 | 20130731
          Length = 542

 Score =  289 bits (739), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 216/368 (58%), Gaps = 3/368 (0%)

Query: 217 YVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMI 276
           Y Q G++  AR  FDQ+   + +S+N M++ Y   N  + A  L E MP + V SWNT+I
Sbjct: 169 YSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLI 228

Query: 277 TGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
             Y + GD+  AR++F  MP+R+ VSW ++I+G      Y  AL +F E++  G      
Sbjct: 229 ARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEV 288

Query: 337 TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI 396
           T    L  CA+  ALE+G +I+  +    ++   ++GNAL+ MY KCG++  A ++F G+
Sbjct: 289 TLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGM 348

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESM-KTIG--VKPDEITMVGVLSACSHAGLID 453
           + K V  WN M+ G A HG+ ++   +F  M +++G  ++PD +T +GVL ACSH GL+D
Sbjct: 349 KMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVD 408

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
           +   YF  M K Y + P SKHY CM+DLL R G LEEA  ++   PF+     W  LLGA
Sbjct: 409 KARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGA 468

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
            R   NTEL E + + + K++    G YVLLSN+YA +GRW +   +RS M  + V +  
Sbjct: 469 CRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLRSEMDYLHVPRQA 528

Query: 574 GYSWVEVQ 581
           GYS + ++
Sbjct: 529 GYSQINMK 536



 Score =  109 bits (273), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 27/328 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  Y +    S+AR LFD++    LVSWN+M++ Y        A  L + MP K VV
Sbjct: 163 NSLLYFYSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVV 222

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD------ 138
           SWN +++ Y + G    AR VF  MP +NA+SWN ++A  V       A  LF       
Sbjct: 223 SWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG 282

Query: 139 -SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV--RDVVSW--NTMISGYAQDGDMS 193
              ++  LIS   ++G   +   L    K+++ + V    + S+  N +++ Y + G++S
Sbjct: 283 VKPTEVTLIS---ILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLS 339

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK-------NEISYNAMVA 246
            A  +F+    + V  W AMV G   +G  +E    F +M +        + +++  ++ 
Sbjct: 340 LAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLV 399

Query: 247 GYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDC 300
                  +D AR  F+ M  R     +   +  M+    + G + +A ++    P Q   
Sbjct: 400 ACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSV 459

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKR 328
           V W  ++       + E A   F ++ +
Sbjct: 460 VLWRTLLGACRTQSNTELAEISFKQLAK 487



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 154/340 (45%), Gaps = 24/340 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A  +F+ +   S VS+N MIS Y     +  A  L + MP + +VSWN ++  Y+
Sbjct: 173 GLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLIARYI 232

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNG 119
           R   +  ARR+F  MP+++ VSWN+M++G         A E+F +M +       ++   
Sbjct: 233 RLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLIS 292

Query: 120 LLAAYVHNGRIEEACRLFDS----KSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
           +L A    G +E   ++++S    +   E    N L+  + K   L  A ++F+ M ++ 
Sbjct: 293 ILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMKT 352

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQ-------SPHQDVFTWTAMVSGYVQNGMLDEART 228
           V  WN M+ G A  G   +   LF +       S   D  T+  ++      G++D+AR 
Sbjct: 353 VSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKARW 412

Query: 229 FFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAMPSRN-VSSWNTMITGYGQN 282
           +FD M ++ +I      Y  MV    +   ++ A ++    P +N V  W T++      
Sbjct: 413 YFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRTQ 472

Query: 283 GDIAQARKLFDMMPQRDCV---SWAAIISGYAQTGHYEEA 319
            +   A   F  + +   +    +  + + YA+ G ++E 
Sbjct: 473 SNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEV 512



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 24/298 (8%)

Query: 49  QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQ 108
           Q D    N +L  Y +   +  AR LFD +    +VSWN M+S Y      + A  +   
Sbjct: 156 QNDPSVQNSLLYFYSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLEL 215

Query: 109 MPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
           MP K  +SWN L+A Y+  G ++ A R+F    +   +SWN ++ G V  +    A +LF
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275

Query: 169 DKMHVRDV----VSWNTMISGYAQDGDMSQAKNLFDQ---SPHQ-DVFTWTAMVSGYVQN 220
            +M    V    V+  +++   A+ G +     +++      H+ + +   A+V+ Y + 
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335

Query: 221 GMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAM---------PSRNVSS 271
           G L  A   F+ M  K    +NAMV G       +   +LF  M         P R   +
Sbjct: 336 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDR--VT 393

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQR-----DCVSWAAIISGYAQTGHYEEALNMFI 324
           +  ++      G + +AR  FD M +R     D   +  ++   ++ G  EEA  + +
Sbjct: 394 FIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIM 451



 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 52/253 (20%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQRDLV 53
           +R G   +A RVF  MP R++VS+N+MI+G +    ++ A +LF +M        +  L+
Sbjct: 232 IRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAGVKPTEVTLI 291

Query: 54  SW--------------------------------NVMLTGYVRNRRLGDARRLFDSMPQK 81
           S                                 N ++  Y +   L  A  +F+ M  K
Sbjct: 292 SILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMKMK 351

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHK-------NAISWNGLLAAYVHNGRIEEAC 134
            V  WNAM+ G A +GY +E  ++F +M          + +++ G+L A  H G +++A 
Sbjct: 352 TVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIGVLVACSHKGLVDKAR 411

Query: 135 RLFDSKSD-WELIS----WNCLMGGFVKRKMLGAARKLFDKMHVRD-VVSWNTMISGYAQ 188
             FD     ++++     + C++    +  +L  A ++      ++ VV W T++     
Sbjct: 412 WYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQNSVVLWRTLLGACRT 471

Query: 189 DGDMSQAKNLFDQ 201
             +   A+  F Q
Sbjct: 472 QSNTELAEISFKQ 484



 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 9/214 (4%)

Query: 354 GKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYAR 413
           G +IH +V+K G++    V N+LL  Y +CG +  A  +F+ I++  +VSWN MI+ Y  
Sbjct: 143 GTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDL 202

Query: 414 HGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
               + A  + E M    V    ++   +++     G +      F  M +  +V+ +S 
Sbjct: 203 VNDYESADYLLELMPCKTV----VSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSM 258

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
              C + +   AG LE   + M+N   +P   +  ++LGA    G  E+G K  E + K+
Sbjct: 259 IAGC-VSVRDYAGALELFSE-MQNAGVKPTEVTLISILGACAETGALEIGHKIYESL-KV 315

Query: 534 EPHNSGMYV--LLSNLYAASGRWADAGNMRSRMR 565
             H    Y+   L N+Y   G  + A  + + M+
Sbjct: 316 CEHKIESYLGNALVNMYCKCGNLSLAWEIFNGMK 349


>Medtr5g091640.1 | PPR containing plant-like protein | HC |
           chr5:39962522-39960655 | 20130731
          Length = 542

 Score =  288 bits (738), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 256/456 (56%), Gaps = 13/456 (2%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQ 219
           A KLF +M   ++ SWNT+I  +++      A +LF    +  +     T+ ++   Y Q
Sbjct: 80  AYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQ 139

Query: 220 NGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEA----MPSRNVSS 271
            G          ++     Q ++   N ++  Y     M  AR +F+     +   +V +
Sbjct: 140 LGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVA 199

Query: 272 WNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
            N+MI GY + G+I ++R LFD M  R  VSW ++ISGY + G   EAL +F +++ +G 
Sbjct: 200 INSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGF 259

Query: 332 SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
            ++  T    L+ CA + AL+ GK +H  + +  +E    V  A++ MY KCGS+  A +
Sbjct: 260 EVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVE 319

Query: 392 VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGV-KPDEITMVGVLSACSHAG 450
           VFE    + +  WN++I G A +G  ++A   F  +++  + KPD ++ +GVL+AC H G
Sbjct: 320 VFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLG 379

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
            I++  +YF  M   Y + PS KHYTC++D+LG+AG LEEA++L++ MP +P A  WG+L
Sbjct: 380 AINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSL 439

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ 570
           L + R H N ++  +AA+ V+++ P ++  YVL+SN++AAS ++ +A   R  M++   +
Sbjct: 440 LSSCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTE 499

Query: 571 KVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEE 606
           K  G S +E+  ++H+F  G   HP+   IY  L +
Sbjct: 500 KEPGCSSIELYGEVHEFIAGGRLHPKTQEIYHLLND 535



 Score =  120 bits (301), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 157/337 (46%), Gaps = 30/337 (8%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDA 71
             N +    ++++ A  SG       + A  LF +MP  +L SWN ++  + R+     A
Sbjct: 57  TLNPIASTRALTFCASPSG-----NINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFA 111

Query: 72  RRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAA 123
             LF  M     Q   +++ ++   YAQ G+A    ++  ++       +    N ++  
Sbjct: 112 ISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYM 171

Query: 124 YVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
           Y + G + EA R+FD K     D ++++ N ++ G+ K   +  +R LFD M  R  VSW
Sbjct: 172 YANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSW 231

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           N+MISGY ++G + +A  LF++   +      FT  ++++     G L   +   D + +
Sbjct: 232 NSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKR 291

Query: 236 K----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
                N I   A++  Y +   ++ A E+FE  P R +S WN++I G   NG   +A + 
Sbjct: 292 NHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEF 351

Query: 292 FDMMP-----QRDCVSWAAIISGYAQTGHYEEALNMF 323
           F  +      + D VS+  +++     G   +A + F
Sbjct: 352 FSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYF 388



 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 163/372 (43%), Gaps = 68/372 (18%)

Query: 3   NGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------------P-- 48
           +G+ + A ++F  MP  +  S+N +I  + R++    A  LF  M            P  
Sbjct: 74  SGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSV 133

Query: 49  -------------------------QRDLVSWNVMLTGYVRNRRLGDARRLFD----SMP 79
                                    Q D    N ++  Y     + +ARR+FD     + 
Sbjct: 134 FKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELY 193

Query: 80  QKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDS 139
             DVV+ N+M+ GYA+ G  DE+R +F  M  + ++SWN +++ YV NG++ EA  LF+ 
Sbjct: 194 DHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNK 253

Query: 140 K-------SDWELISWNCLMGGFVKRKMLGAARKLFDKM---HVR-DVVSWNTMISGYAQ 188
                   S++ ++S   L+        L   + + D +   H   +V+    +I  Y +
Sbjct: 254 MQVEGFEVSEFTMVS---LLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCK 310

Query: 189 DGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP-----QKNEISYNA 243
            G +  A  +F+  P + +  W +++ G   NG   EA  FF ++      + + +S+  
Sbjct: 311 CGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIG 370

Query: 244 MVAGYVQSNKMDMARELFEAMPSR-----NVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
           ++        ++ AR+ FE M ++     ++  +  ++   GQ G + +A +L   MP +
Sbjct: 371 VLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLK 430

Query: 299 -DCVSWAAIISG 309
            D + W +++S 
Sbjct: 431 PDAIIWGSLLSS 442



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 251 SNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLF-DMM---PQRDCVSWAAI 306
           S  ++ A +LF  MP+ N+ SWNT+I  + ++     A  LF DM+    Q   +++ ++
Sbjct: 74  SGNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSV 133

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSC--ALSTCADIAALELGKQIHGQVVKT 364
              YAQ GH      +   + + G  L    F C   +   A+   +   +++       
Sbjct: 134 FKAYAQLGHAHYGAQLHGRVVKLG--LQNDQFICNTIIYMYANGGLMSEARRVFDGKKLE 191

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVF 424
            Y+      N+++  Y KCG I E+ ++F+ +  +  VSWN+MI+GY R+G   +AL +F
Sbjct: 192 LYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELF 251

Query: 425 ESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGR 484
             M+  G +  E TMV +L+AC+H G +  G ++ +   K      +    T +ID+  +
Sbjct: 252 NKMQVEGFEVSEFTMVSLLNACAHLGALQHG-KWVHDYIKRNHFELNVIVVTAIIDMYCK 310

Query: 485 AGRLEEAQDLMRNMP 499
            G +E A ++    P
Sbjct: 311 CGSVENAVEVFETCP 325



 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 145/329 (44%), Gaps = 51/329 (15%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           V+ N+MI GY +      +R+LFD M  R  VSWN M++GYVRN +L +A  LF+ M  +
Sbjct: 198 VAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVE 257

Query: 82  DV-VSWNAMLS--------GYAQNG--YADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
              VS   M+S        G  Q+G    D  +   +++   N I    ++  Y   G +
Sbjct: 258 GFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFEL---NVIVVTAIIDMYCKCGSV 314

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
           E A  +F++     L  WN ++ G         A + F K+    ++             
Sbjct: 315 ENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLK------------ 362

Query: 191 DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAMV 245
                          D  ++  +++     G +++AR +F+ M  K EI      Y  +V
Sbjct: 363 --------------PDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPSIKHYTCIV 408

Query: 246 AGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQAR----KLFDMMPQRDC 300
               Q+  ++ A EL + MP + +   W ++++   ++ ++  AR    +++++ P  D 
Sbjct: 409 DVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQIARRAAQRVYELNPS-DA 467

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRD 329
             +  + + +A +  +EEA+   + +K +
Sbjct: 468 SGYVLMSNVHAASNKFEEAIEQRLLMKEN 496



 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 23/278 (8%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL-VSWNVMLTGY 62
           G  D +  +F+ M  R+SVS+N+MISGY+RN +   A +LF+KM      VS   M++  
Sbjct: 211 GEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLL 270

Query: 63  VRNRRLGDARR---LFDSMPQK----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI 115
                LG  +    + D + +     +V+   A++  Y + G  + A EVF   P +   
Sbjct: 271 NACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLS 330

Query: 116 SWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCL--MGGFVKRKMLGA---ARKLFDK 170
            WN ++     NG   EA   F      +L+  + +  +G     K LGA   AR  F+ 
Sbjct: 331 CWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFEL 390

Query: 171 MHVR-----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ-DVFTWTAMVSGYVQNGMLD 224
           M  +      +  +  ++    Q G + +A+ L    P + D   W +++S   ++  + 
Sbjct: 391 MMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRNVQ 450

Query: 225 EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFE 262
            AR    ++ + N     +  +GYV  + +  A   FE
Sbjct: 451 IARRAAQRVYELNP----SDASGYVLMSNVHAASNKFE 484


>Medtr7g032360.1 | PPR containing plant-like protein | HC |
           chr7:11369613-11371524 | 20130731
          Length = 541

 Score =  288 bits (737), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 221/355 (62%), Gaps = 5/355 (1%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
           N++++ ++       AR++F+ M  R+V SWN+M+ GY +NG++  A  LF  M  R+ +
Sbjct: 168 NSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNII 227

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIK----RDGESLNRSTFSCALSTCADIAALELGKQI 357
           +W +II+G  Q GH +E+L +F E++     D    ++ T +  LS CA + +++ GK +
Sbjct: 228 TWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWV 287

Query: 358 HGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFG 417
           H  + K   E    +G AL+ MY KCG + +A ++F  + EKD  +W  MI+ +A HGFG
Sbjct: 288 HAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFG 347

Query: 418 KQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC 477
           K+A   F  M+  GVKP+ +T VG+LSACSH+GL+++G   F  M + YS+ P   HY C
Sbjct: 348 KKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYAC 407

Query: 478 MIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHN 537
           M+D+L RA   +EA  L+R+MP +P    WGALLG  ++HGN +LGEK A  +  +EPHN
Sbjct: 408 MVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHN 467

Query: 538 SGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQ-KVTGYSWVEVQNKIHKFTVGD 591
              Y+ L ++Y  +G++  A  +R+ M++ G++ K+ G S +E+   + +F+VG+
Sbjct: 468 HAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEINGVVQEFSVGE 522



 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 152/323 (47%), Gaps = 31/323 (9%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++IS ++       AR +FD+M  RD+VSWN M+ GY+RN  +  A  LF  M  ++++
Sbjct: 168 NSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNII 227

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM----------PHK----NAISWNGLLAAYVHNGRI 130
           +WN++++G  Q G+A E+ E+F++M          P K    + +S   LL +  H   +
Sbjct: 228 TWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWV 287

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
               R  D + D  ++    L+  + K   +  A ++F+ M  +D  +W  MIS +A  G
Sbjct: 288 HAYLRKNDIECD--VVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISVFALHG 345

Query: 191 DMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----Y 241
              +A + F +     V     T+  ++S    +G++++ R  FD M +   I      Y
Sbjct: 346 FGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHY 405

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQARK----LFDMMP 296
             MV    ++   D A  L  +MP + +V  W  ++ G   +G+I    K    L D+ P
Sbjct: 406 ACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHYLIDLEP 465

Query: 297 QRDCVSWAAIISGYAQTGHYEEA 319
                 +  +   Y + G Y+ A
Sbjct: 466 HNHAF-YINLCDIYVKAGKYDAA 487



 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 124/253 (49%), Gaps = 41/253 (16%)

Query: 318 EALNMFIEIKRDGESLNRSTFSCALSTCADIA-ALELGKQIHGQVVKTGYETGCFVGNAL 376
           +AL ++ ++   G   N  TF   +  C+ +     +G+ IH  V+K G+    FVGN+L
Sbjct: 111 KALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSL 170

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH---------------------- 414
           + ++   G    A  VF+ +  +DVVSWN+M+ GY R+                      
Sbjct: 171 ISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWN 230

Query: 415 ---------GFGKQALMVFESMKTIG----VKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
                    G  K++L +F  M+ +     VKPD+IT+  VLSAC+  G ID G ++ ++
Sbjct: 231 SIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHG-KWVHA 289

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
             +   +       T ++++ G+ G +++A ++  +MP E  A++W A++    +HG   
Sbjct: 290 YLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP-EKDASAWTAMISVFALHG--- 345

Query: 522 LGEKAAEMVFKME 534
            G+KA +   +ME
Sbjct: 346 FGKKAFDCFLEME 358



 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 157/372 (42%), Gaps = 84/372 (22%)

Query: 173 VRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQ 232
           + DV   N++IS +   G    A+ +FD+   +DV +W +MV GY++NG ++ A   F +
Sbjct: 161 LNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRK 220

Query: 233 MPQKNEISYNAMVAGYVQSNKMDMARELFEAM----------PSR--------------- 267
           M  +N I++N+++ G VQ+     + E+F  M          P +               
Sbjct: 221 MNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGS 280

Query: 268 ------------------NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
                             +V     ++  YG+ GD+ QA ++F+ MP++D  +W A+IS 
Sbjct: 281 IDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMISV 340

Query: 310 YAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG 369
           +A  G  ++A + F+E+++ G   N  TF   LS C+    +E G+              
Sbjct: 341 FALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGR-------------C 387

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIE--EKDVVSWNTMIAGYARHGFGKQALMVFESM 427
           CF                   DV + +   E  +  +  M+   +R     +AL +  SM
Sbjct: 388 CF-------------------DVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSM 428

Query: 428 KTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTP-SSKHYTCMIDLLGRAG 486
               +KPD      +L  C   G I  G +  + +     + P +   Y  + D+  +AG
Sbjct: 429 P---MKPDVYVWGALLGGCQMHGNIKLGEKVAHYL---IDLEPHNHAFYINLCDIYVKAG 482

Query: 487 RLEEAQDLMRNM 498
           + + A+ +  +M
Sbjct: 483 KYDAAKRIRNSM 494



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 153/370 (41%), Gaps = 71/370 (19%)

Query: 10  LRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNV----MLTGYVRN 65
           LRV+N M R    SY  +  G   N  +  A  L+ +M  + +V  N+    ++ G  R 
Sbjct: 87  LRVYNIMIR----SYGCIEGGDDSNCCYK-ALMLYKQMLNKGIVPNNLTFPFLVKGCSRL 141

Query: 66  RRLGDARRLFDSMPQK-----DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           +  G    +  +   K     DV   N+++S +   G +  AR+VF +M  ++ +SWN +
Sbjct: 142 QYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSM 201

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR------ 174
           +  Y+ NG +E A  LF   +   +I+WN ++ G V+      + ++F +M         
Sbjct: 202 VVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVV 261

Query: 175 -------------------------------------DVVSWNTMISGYAQDGDMSQAKN 197
                                                DVV    +++ Y + GD+ QA  
Sbjct: 262 KPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIE 321

Query: 198 LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNK 253
           +F+  P +D   WTAM+S +  +G   +A   F +M     + N +++  +++    S  
Sbjct: 322 IFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGL 381

Query: 254 MDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFD-------MMPQR-DCVSWAA 305
           ++  R  F+ M  + V S    I  Y    DI    +LFD        MP + D   W A
Sbjct: 382 VEQGRCCFDVM--KRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGA 439

Query: 306 IISGYAQTGH 315
           ++ G    G+
Sbjct: 440 LLGGCQMHGN 449


>Medtr1g114220.1 | PPR containing plant-like protein | HC |
           chr1:51543346-51541694 | 20130731
          Length = 550

 Score =  288 bits (737), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 250/457 (54%), Gaps = 11/457 (2%)

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNG 221
           ++F ++    + SWN +I GY+   +   + ++F +        D  T+  +V    +  
Sbjct: 69  RVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLS 128

Query: 222 MLDEARTFFDQMPQKNEIS----YNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMIT 277
                 +   Q+ +    S     N+++  Y     +  A ++FE+M  +N+ SWN+M+ 
Sbjct: 129 KQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLD 188

Query: 278 GYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRST 337
           GY + G++A A+K+F+ M +RD  SW++ I GY + G Y EA+ +F +++  G   N  T
Sbjct: 189 GYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVT 248

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGI- 396
               LS CA + AL+ G+ +H  ++         +  +L+ MY KCG+I EA  VF GI 
Sbjct: 249 MVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGIS 308

Query: 397 -EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRG 455
             + DV  WN MI G A HG  +++L +F+ M+  G++ DEIT + +L+AC+H GL+   
Sbjct: 309 KSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEA 368

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASR 515
             +F S+ K   +TP+S+HY CM+D+L RAG+L  A   +  +P EP A+  GA+     
Sbjct: 369 WNFFESLVKR-GMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTASMLGAIFSGCI 427

Query: 516 IHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGY 575
            H N +L E     + +++P+N G Y+ LSN+YA   RW D+ +MR  M   GV+K  G+
Sbjct: 428 NHRNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAMERRGVKKSPGF 487

Query: 576 SWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMR 612
           S+VE+    H+F   D  HP+ D  Y+ L  +  +M+
Sbjct: 488 SFVEISEIHHRFIAHDKTHPDSDETYSMLHFVVCQMK 524



 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 64/303 (21%)

Query: 251 SNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGY 310
           S  +D +  +F  + S  + SWN                                II GY
Sbjct: 61  SGDIDYSYRVFSQISSPTIFSWNI-------------------------------IIRGY 89

Query: 311 AQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGC 370
           + + +   +L++F+++ R G + +  T+   +   A ++  + G  +H Q++KTG+E+  
Sbjct: 90  SNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSKQKSGVSVHAQIIKTGHESDR 149

Query: 371 FVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA------------------ 412
           F+ N+L+ MY  CG+I  A+ VFE ++ K++VSWN+M+ GYA                  
Sbjct: 150 FIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQER 209

Query: 413 -------------RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYF 459
                        + G  ++A+ VFE M+ +G K +E+TMV VLSAC+H G + +G    
Sbjct: 210 DVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKG-RMM 268

Query: 460 YSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP-FEPPAASWGALLGASRIHG 518
           +    D  +  +    T ++D+  + G +EEA  + R +   +     W A++G    HG
Sbjct: 269 HQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHG 328

Query: 519 NTE 521
             E
Sbjct: 329 LVE 331



 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 155/318 (48%), Gaps = 41/318 (12%)

Query: 73  RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEE 132
           R+F  +    + SWN ++ GY+ +     +  +F +M  ++ ++ + L   ++    ++ 
Sbjct: 69  RVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKML-RHGVAPDYLTYPFL----VKA 123

Query: 133 ACRLFDSKS-------------DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
           + RL   KS             + +    N L+  +     +  A K+F+ M  +++VSW
Sbjct: 124 SARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSW 183

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQ 235
           N+M+ GYA+ G+M+ A+ +F+    +DV +W++ + GYV+ G   EA   F++M    P+
Sbjct: 184 NSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPK 243

Query: 236 KNEISYNAMVA-----GYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
            NE++  ++++     G +Q  +M M + + + +    +    +++  Y + G I +A  
Sbjct: 244 ANEVTMVSVLSACAHLGALQKGRM-MHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALF 302

Query: 291 LFDMM--PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADI 348
           +F  +   Q D   W A+I G A  G  EE+L +F E++  G   +  T+ C L+ CA  
Sbjct: 303 VFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACA-- 360

Query: 349 AALELGKQIHGQVVKTGY 366
                    HG +VK  +
Sbjct: 361 ---------HGGLVKEAW 369



 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 42/300 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++I  Y        A  +F+ M  ++LVSWN ML GY +   +  A+++F+SM ++DV 
Sbjct: 153 NSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVR 212

Query: 85  SWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           SW++ + GY + G   EA  VF +M    P  N ++   +L+A  H              
Sbjct: 213 SWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAH-------------- 258

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD 200
                      +G   K +M+   + + D +    +V   +++  YA+ G + +A  +F 
Sbjct: 259 -----------LGALQKGRMM--HQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFR 305

Query: 201 --QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKM 254
                  DVF W AM+ G   +G+++E+   F +M     + +EI+Y  ++A       +
Sbjct: 306 GISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLV 365

Query: 255 DMARELFEAMPSRNVSS----WNTMITGYGQNGDIAQARKLFDMMPQRDCVS-WAAIISG 309
             A   FE++  R ++     +  M+    + G +  A +    +P     S   AI SG
Sbjct: 366 KEAWNFFESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTASMLGAIFSG 425



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 136/285 (47%), Gaps = 27/285 (9%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRL 68
           A +VF +M  ++ VS+N+M+ GY +    ++A+ +F+ M +RD+ SW+  + GYV+    
Sbjct: 168 AHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEY 227

Query: 69  GDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAR----EVFYQMPHKNAISWNGL 120
            +A  +F+ M    P+ + V+  ++LS  A  G   + R     +   +     +    L
Sbjct: 228 REAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSL 287

Query: 121 LAAYVHNGRIEEACRLFD--SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV----R 174
           +  Y   G IEEA  +F   SKS  ++  WN ++GG     ++  + KLF +M +     
Sbjct: 288 VDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRS 347

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEART 228
           D +++  +++  A  G + +A N F+       +P  +   +  MV    + G L  A  
Sbjct: 348 DEITYLCLLAACAHGGLVKEAWNFFESLVKRGMTPTSE--HYACMVDVLARAGQLTTAYQ 405

Query: 229 FFDQMPQKNEIS-YNAMVAGYVQSNKMDMA----RELFEAMPSRN 268
           F  Q+P +   S   A+ +G +     D+A    R+L E  P+ +
Sbjct: 406 FICQIPIEPTASMLGAIFSGCINHRNFDLAETVGRKLIELDPNND 450



 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 26/292 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNV 57
           + G    A +VF +M  R   S+++ I GY++   +  A  +F+KM    P+ + V+   
Sbjct: 192 KCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVS 251

Query: 58  MLTGYVRNRRLGDARR----LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM--PH 111
           +L+       L   R     + D++    +V   +++  YA+ G  +EA  VF  +    
Sbjct: 252 VLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQ 311

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLFDS------KSDWELISWNCLMGGFVKRKMLGAAR 165
            +   WN ++     +G +EE+ +LF        +SD   I++ CL+       ++  A 
Sbjct: 312 TDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDE--ITYLCLLAACAHGGLVKEAW 369

Query: 166 KLFDKMHVRDVVS----WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWT-AMVSGYVQN 220
             F+ +  R +      +  M+   A+ G ++ A     Q P +   +   A+ SG + +
Sbjct: 370 NFFESLVKRGMTPTSEHYACMVDVLARAGQLTTAYQFICQIPIEPTASMLGAIFSGCINH 429

Query: 221 GMLDEARTF---FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV 269
              D A T      ++   N+  Y  +   Y    + D ++ + EAM  R V
Sbjct: 430 RNFDLAETVGRKLIELDPNNDGRYIGLSNVYAVVKRWDDSKSMREAMERRGV 481


>Medtr1g041310.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr1:15372357-15367000 | 20130731
          Length = 686

 Score =  286 bits (731), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 312/609 (51%), Gaps = 43/609 (7%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGY----------LRNARFSLARDLFDKMPQRDLV 53
           G    A +VF+ +  +   +Y +MI+ Y            N  F + +     +P R  V
Sbjct: 81  GKIKDAHKVFDEITNKDIFAYTSMITAYGHSGGSCVYGAFNTAFIMQQQ--GMLPNR--V 136

Query: 54  SWNVMLTGYVRNRRLGDARRLFDSMPQKDV-----VSWNAMLSGYAQNGYADEAREVFYQ 108
           +   ++    + R L + + +     ++++     V    +L  Y + G    A  VF +
Sbjct: 137 TLVSLMHAAAKLRALREGQAVHGYAVRREIGLGDDVFETTLLDMYHKCGGVGLAASVFAK 196

Query: 109 MPHKNAI---SWNGLLAAYVHNGRIEEACRLF------DSKSDWELIS---WNCLMGGFV 156
           M  +      SWN L+A Y+ NG+  EA  LF      +   D   ++   + C+   ++
Sbjct: 197 MDARKMTKVGSWNALIAGYLRNGQALEAFELFRRMMCRNVLPDLLTLANAIFCCVELNYL 256

Query: 157 KRKMLGAARKLFDKMHVR-DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVS 215
           +R M  +       M V  D+V+   ++  Y +  D+++A+ LF++  ++D   +  M++
Sbjct: 257 RRGM--SIHGYMITMGVELDLVASTALVDLYCKI-DITKARKLFERLGNKDAVVYNVMMT 313

Query: 216 GYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQS----NKMDMAREL----FEAMPSR 267
           GY++NG+  EA   F +M + N  +  A+    + +      + + R +       M   
Sbjct: 314 GYLENGLPVEAVNVFREMVKTNASTNVALFLNLISALSKLRDIRLVRSIHGYVLRHMHIT 373

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           +V   N +I  Y + G +  AR++F+ M  RD VSW ++I GY   GH ++A+ +F  ++
Sbjct: 374 HVEIANQIIHAYAKFGYVVDAREVFNRMRTRDLVSWTSMIKGYVYHGHIDKAIILFRLLQ 433

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           R+  S++  T    L   + +  L   K++H    +  +     V N+L+  Y KCG + 
Sbjct: 434 REHLSIDSVTLIGLLQALSQLGCLSFIKEVHCFSYRFFHGKDLSVNNSLITTYAKCGKLC 493

Query: 388 EANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
            A  +F+ + E+ + SWN MI  YA HG   + L +F+ MK   V PDE+T   +L+ACS
Sbjct: 494 TARYIFQQMTERCLTSWNAMIGAYAMHGNYTEVLELFDHMKAGKVTPDEVTFTSILTACS 553

Query: 448 HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASW 507
           H+GL++ G + F  M K+Y++ P+  HY+C++DLL RAGRL EA +L+++MP    +A+ 
Sbjct: 554 HSGLVEEGLQIFGIMMKEYAIVPNEVHYSCIVDLLSRAGRLREAYNLVKSMPSTHSSAAM 613

Query: 508 GALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDV 567
            ALL A R++G+TE+GE   + + K+EPH+SG Y L+SN+ A  GRW +   +R+  ++ 
Sbjct: 614 SALLSACRLYGDTEIGEAIGKQILKLEPHSSGPYALVSNICAQGGRWDEVAQIRAMTKNT 673

Query: 568 GVQKVTGYS 576
             +   GYS
Sbjct: 674 EFKSTPGYS 682



 Score = 98.2 bits (243), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 126/297 (42%), Gaps = 35/297 (11%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGY----------------- 217
           D    +++I  Y+Q G +  A  +FD+  ++D+F +T+M++ Y                 
Sbjct: 66  DCFVGSSLIRLYSQYGKIKDAHKVFDEITNKDIFAYTSMITAYGHSGGSCVYGAFNTAFI 125

Query: 218 -VQNGMLDEARTFFDQM---PQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWN 273
             Q GML    T    M    +   +     V GY    ++ +  ++FE           
Sbjct: 126 MQQQGMLPNRVTLVSLMHAAAKLRALREGQAVHGYAVRREIGLGDDVFE----------T 175

Query: 274 TMITGYGQNGDIAQARKLFDMMPQRDCV---SWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           T++  Y + G +  A  +F  M  R      SW A+I+GY + G   EA  +F  +    
Sbjct: 176 TLLDMYHKCGGVGLAASVFAKMDARKMTKVGSWNALIAGYLRNGQALEAFELFRRMMCRN 235

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
              +  T + A+  C ++  L  G  IHG ++  G E       AL+ +Y K   I +A 
Sbjct: 236 VLPDLLTLANAIFCCVELNYLRRGMSIHGYMITMGVELDLVASTALVDLYCKI-DITKAR 294

Query: 391 DVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS 447
            +FE +  KD V +N M+ GY  +G   +A+ VF  M       +    + ++SA S
Sbjct: 295 KLFERLGNKDAVVYNVMMTGYLENGLPVEAVNVFREMVKTNASTNVALFLNLISALS 351



 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 8/203 (3%)

Query: 316 YEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNA 375
           Y++ L  ++  K +   L  ST +  L TC  +  LE G  +H   +K  + + CFVG++
Sbjct: 13  YDDILRRYLASKHNKFGLCASTITFCLKTCLSLGTLEFGIGVHVDSIKLNFNSDCFVGSS 72

Query: 376 LLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFES---MKTIGV 432
           L+ +Y + G I +A+ VF+ I  KD+ ++ +MI  Y   G G      F +   M+  G+
Sbjct: 73  LIRLYSQYGKIKDAHKVFDEITNKDIFAYTSMITAYGHSG-GSCVYGAFNTAFIMQQQGM 131

Query: 433 KPDEITMVGVLSACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
            P+ +T+V ++ A +    +  G   + Y++ ++  +       T ++D+  + G +  A
Sbjct: 132 LPNRVTLVSLMHAAAKLRALREGQAVHGYAVRREIGLGDDVFE-TTLLDMYHKCGGVGLA 190

Query: 492 QDLMRNMPFE--PPAASWGALLG 512
             +   M         SW AL+ 
Sbjct: 191 ASVFAKMDARKMTKVGSWNALIA 213


>Medtr2g049310.1 | PPR containing plant-like protein | HC |
           chr2:21732028-21729769 | 20130731
          Length = 717

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 273/514 (53%), Gaps = 21/514 (4%)

Query: 117 WNGLLAAYVHNGRIEEA----CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMH 172
           WN L+     +G+I E+    CR+ +       ++   L+   V+   L   + L   + 
Sbjct: 185 WNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLINLLRATVESNSLKIGKVLHSLVV 244

Query: 173 VRDV---VSWNT-MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEART 228
             ++   ++ NT ++S YA+   +  A+ +F++ P +DV  W  M+S Y  +G   E+  
Sbjct: 245 ASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLE 304

Query: 229 FFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRN-----VSSWNTMITGY 279
               M +     +  +    ++   +   ++  ++L  A   RN     VS  N+++  Y
Sbjct: 305 LVYCMVRSGIRPDMFTAIPAISSITKLKSIEWGKQL-HAQVIRNGSDYQVSVHNSLVDMY 363

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFS 339
               D+  ARK+F ++  R  VSW+A+I GYA   +  EAL++FIE+K  G  ++     
Sbjct: 364 STCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVI 423

Query: 340 CALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF--EGIE 397
             L   A I AL     +HG  +KT  ++   +  +LL  Y KCG I  A  +F  E   
Sbjct: 424 NILPAFAKIGALHYVGYLHGYSLKTNLDSLKSLKTSLLNSYAKCGCIEMARKLFNEEKSS 483

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KD+V+WN+MI  Y+ HG   Q   ++  +K   VKPD +T +G+L+AC ++GL+D+G E
Sbjct: 484 LKDIVAWNSMITAYSNHGEWFQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDKGKE 543

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
            F  M   Y   PS +H  CM+DLLGRAG+++EA+ ++        A  +G LL A ++H
Sbjct: 544 IFKEMVDIYGFQPSKEHNACMVDLLGRAGKIDEARKIIETNQLNSDARVYGPLLSACKMH 603

Query: 518 G-NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           G  T+  E AAE + KMEP N   YVLLSN++AA+G+W     MRS +RD G++K  G S
Sbjct: 604 GLETDFAELAAEKLIKMEPENPANYVLLSNIFAAAGKWDKFAKMRSFLRDRGLKKTPGCS 663

Query: 577 WVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLK 610
           WV +  + H+F V D  HP  + IY+ L+ L+L+
Sbjct: 664 WVVLDGQFHEFRVADHSHPRSEDIYSVLKVLELE 697



 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 165/395 (41%), Gaps = 67/395 (16%)

Query: 50  RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           ++L     +L+ Y +   L DAR +F+ MP+KDVV WN M+S Y+ +G   E+ E+ Y M
Sbjct: 250 KELTVNTALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMISVYSGSGCPKESLELVYCM 309

Query: 110 PHK-------------------NAISWNGLL-AAYVHNGRIEEACRLFDSKSDWELISWN 149
                                  +I W   L A  + NG            SD+++   N
Sbjct: 310 VRSGIRPDMFTAIPAISSITKLKSIEWGKQLHAQVIRNG------------SDYQVSVHN 357

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQ 205
            L+  +     L +ARK+F  +  R VVSW+ MI GYA   +  +A +LF +        
Sbjct: 358 SLVDMYSTCADLNSARKIFGLIKDRTVVSWSAMIKGYAMHDNCLEALSLFIEMKLSGTKV 417

Query: 206 DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMP 265
           D+     ++  + + G L                 Y   + GY     +D  + L     
Sbjct: 418 DLVIVINILPAFAKIGALH----------------YVGYLHGYSLKTNLDSLKSL----- 456

Query: 266 SRNVSSWNTMITGYGQNGDIAQARKLF--DMMPQRDCVSWAAIISGYAQTGHYEEALNMF 323
                   +++  Y + G I  ARKLF  +    +D V+W ++I+ Y+  G + +   ++
Sbjct: 457 ------KTSLLNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNHGEWFQCFELY 510

Query: 324 IEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFK 382
            +IK      +  TF   L+ C +   ++ GK+I  ++V   G++        ++ +  +
Sbjct: 511 NQIKLSIVKPDHVTFLGMLTACVNSGLVDKGKEIFKEMVDIYGFQPSKEHNACMVDLLGR 570

Query: 383 CGSIGEANDVFEGIE-EKDVVSWNTMIAGYARHGF 416
            G I EA  + E  +   D   +  +++    HG 
Sbjct: 571 AGKIDEARKIIETNQLNSDARVYGPLLSACKMHGL 605



 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 155/345 (44%), Gaps = 48/345 (13%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
           ++ G    +L V + + +  +V+  A++S Y +      AR +F+KMP++D+V WN+M++
Sbjct: 233 LKIGKVLHSLVVASNLCKELTVN-TALLSMYAKLDSLKDARLMFEKMPEKDVVVWNIMIS 291

Query: 61  GYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
            Y  +    ++  L   M +          SG   + +   A      +    +I W   
Sbjct: 292 VYSGSGCPKESLELVYCMVR----------SGIRPDMFT--AIPAISSITKLKSIEWGKQ 339

Query: 121 L-AAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSW 179
           L A  + NG            SD+++   N L+  +     L +ARK+F  +  R VVSW
Sbjct: 340 LHAQVIRNG------------SDYQVSVHNSLVDMYSTCADLNSARKIFGLIKDRTVVSW 387

Query: 180 NTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLD--------EAR 227
           + MI GYA   +  +A +LF +        D+     ++  + + G L           +
Sbjct: 388 SAMIKGYAMHDNCLEALSLFIEMKLSGTKVDLVIVINILPAFAKIGALHYVGYLHGYSLK 447

Query: 228 TFFDQMPQKNEISYNAMVAGYVQSNKMDMARELF--EAMPSRNVSSWNTMITGYGQNGDI 285
           T  D +         +++  Y +   ++MAR+LF  E    +++ +WN+MIT Y  +G+ 
Sbjct: 448 TNLDSLKSLK----TSLLNSYAKCGCIEMARKLFNEEKSSLKDIVAWNSMITAYSNHGEW 503

Query: 286 AQARKLFDMMP----QRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
            Q  +L++ +     + D V++  +++    +G  ++   +F E+
Sbjct: 504 FQCFELYNQIKLSIVKPDHVTFLGMLTACVNSGLVDKGKEIFKEM 548



 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 114/272 (41%), Gaps = 18/272 (6%)

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI 326
           +N S  + +I  Y   G +  + K+F      D + + A +      G YE+ L ++ E+
Sbjct: 51  QNSSLSSKLIDSYSNFGLLHFSHKIFSFTENPDSIIYNAFLRNLFMFGEYEKTLFLYKEM 110

Query: 327 KRDGESLNRS-TFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS 385
            +     +    FS   S         L    HG VVK G +    VGN L+ +Y     
Sbjct: 111 VQKSMCPDEDCCFSVLKSLFYVFHEKGLIMMAHGHVVKLGMDAFDLVGNTLIELY----- 165

Query: 386 IGEANDVFEGIEEKDVVS----WNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVG 441
            G  N    G+ E+  V+    WN +I      G   ++  +F  M+   V+P+ +T++ 
Sbjct: 166 -GFLNG--NGLVERKSVTKLNFWNNLIYEAYESGKIVESFELFCRMRNENVQPNSVTLIN 222

Query: 442 VLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           +L A   +  +  G +  +S+    ++       T ++ +  +   L++A+ +   MP E
Sbjct: 223 LLRATVESNSLKIG-KVLHSLVVASNLCKELTVNTALLSMYAKLDSLKDARLMFEKMP-E 280

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
                W  ++    ++  +   +++ E+V+ M
Sbjct: 281 KDVVVWNIMIS---VYSGSGCPKESLELVYCM 309


>Medtr6g091880.1 | PPR containing plant-like protein | HC |
           chr6:34616147-34614592 | 20130731
          Length = 446

 Score =  283 bits (725), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/391 (38%), Positives = 228/391 (58%), Gaps = 25/391 (6%)

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           E  +N  +E+   G   + S F   L  C D+ +LELGK++H  + ++ +     + N L
Sbjct: 81  EGNVNQVLELMGQGAFADYSDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRL 140

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           +G+Y KCGS+ +A  VF+ + +++V S N MI GY  +G G   L+VF+ M+  GV PDE
Sbjct: 141 IGLYVKCGSVKDARKVFDKMPDRNVGSLNLMIGGYNVNGLGIDGLLVFKQMRQQGVVPDE 200

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
            T   VL+ C+    ++ G   F SM K+Y + P  +HY  ++++ G AGRL+EA + + 
Sbjct: 201 ETFALVLAVCALVDGVEEGLMQFESM-KEYGIVPGMEHYLGVVNIFGCAGRLDEAHEFIE 259

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD 556
           NMP E     W  L   +RIHG+ E  + A E++  ++P               S   AD
Sbjct: 260 NMPIEAGVELWETLRNFARIHGDLEREDCADELLTVLDP---------------SKAAAD 304

Query: 557 AGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
              +  R      +K +  + +E +N++ ++    C  P K+     L  L  +MR  GY
Sbjct: 305 KVPLPQR------KKQSAINMLEEKNRVSEYR---CNMPYKEEGDVKLRGLTGQMREAGY 355

Query: 617 VSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKH 676
           V  T+ VLHD++EEEKE  L+YHSE+LA+A+G+++ P    +R+IKNLR+C DCHNAIK 
Sbjct: 356 VPDTRYVLHDIDEEEKEKALQYHSERLAIAYGLISTPPRTTLRIIKNLRICGDCHNAIKI 415

Query: 677 ISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +SKIVGR +I+RD+ RFHHF +G CSCGDYW
Sbjct: 416 MSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 446



 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 268 NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIK 327
           NV   N +I  Y + G +  ARK+FD MP R+  S   +I GY   G   + L +F +++
Sbjct: 133 NVELCNRLIGLYVKCGSVKDARKVFDKMPDRNVGSLNLMIGGYNVNGLGIDGLLVFKQMR 192

Query: 328 RDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIG 387
           + G   +  TF+  L+ CA +  +E G      + + G   G      ++ ++   G + 
Sbjct: 193 QQGVVPDEETFALVLAVCALVDGVEEGLMQFESMKEYGIVPGMEHYLGVVNIFGCAGRLD 252

Query: 388 EANDVFEGIE-EKDVVSWNTMIAGYAR-HG 415
           EA++  E +  E  V  W T+   +AR HG
Sbjct: 253 EAHEFIENMPIEAGVELWETL-RNFARIHG 281


>Medtr4g007160.1 | PPR containing plant-like protein | HC |
           chr4:976511-978646 | 20130731
          Length = 595

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/451 (33%), Positives = 250/451 (55%), Gaps = 6/451 (1%)

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D+   N+ +  Y+  GD   A  +FD  P +DV +WT ++SGY++ G+ ++A   F +M 
Sbjct: 143 DMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMD 202

Query: 235 -QKNEISYNAMVAGYVQSNKMDMARE---LFEAMP-SRNVSSWNTMITGYGQNGDIAQAR 289
              N  ++ +++    +   +++ +    L    P  + +   NT++  Y +   +  A+
Sbjct: 203 VAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAK 262

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
           +LFD +P++D VSW ++ISG  Q    +E+L++F E+   G   +    +  LS CA + 
Sbjct: 263 RLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLG 322

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIA 409
            L+ G+ +H  +  +  +    +G +L+ MY KCG I  A  +F  +  K++ +WN  I 
Sbjct: 323 LLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIG 382

Query: 410 GYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM-NKDYSV 468
           G A +G G++AL  F  +   G +P+EIT + V SAC H+GL+D G  YF  M +  Y++
Sbjct: 383 GLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNL 442

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAE 528
           +P  +HY CM+DLL RA  +EEA +L+  MP  P     GALL AS  +GN EL  +  +
Sbjct: 443 SPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLK 502

Query: 529 MVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFT 588
            V   E   SG+YVLLSN YA + +WA+  ++R  M++ G+ K  G S + V  K HKF 
Sbjct: 503 TVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSHKFV 562

Query: 589 VGDCFHPEKDRIYAFLEELDLKMRREGYVSS 619
           VGD  HP+ + I+  L  L  +   EG++ +
Sbjct: 563 VGDNNHPQSEDIHVLLNILANQTYLEGHIDT 593



 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 141/301 (46%), Gaps = 19/301 (6%)

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF---D 138
           D+   N+ +  Y+  G    A +VF  MP ++ +SW GL++ Y+  G   +A  LF   D
Sbjct: 143 DMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMD 202

Query: 139 SKSDWELISWNCLMGGFVKRKMLGAARKLFDKM----HVRDVVSWNTMISGYAQDGDMSQ 194
              +    ++  ++G   K   L   + +   +    H +++V  NT++  Y +   ++ 
Sbjct: 203 VAPN--AATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTD 260

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQ 250
           AK LFD+ P +D+ +WT+M+SG VQ     E+   F +M     + + +   ++++    
Sbjct: 261 AKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACAS 320

Query: 251 SNKMDMARELFEAMPSRNVSSWN-----TMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
              +D  R + E +    +  W+     ++I  Y + G I  A+++F+++P ++  +W A
Sbjct: 321 LGLLDYGRWVHEYIDHSRI-KWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNA 379

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
            I G A  GH +EAL  F  +   G   N  TF    S C     ++ G+    Q+    
Sbjct: 380 YIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPP 439

Query: 366 Y 366
           Y
Sbjct: 440 Y 440



 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 57/353 (16%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM---------------- 47
           G    A +VF+ MP R  VS+  +ISGY++   F+ A  LF +M                
Sbjct: 158 GDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFLRMDVAPNAATFVSILGAC 217

Query: 48  -------------------PQ-RDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWN 87
                              P  ++LV  N ++  YV+   + DA+RLFD +P+KD+VSW 
Sbjct: 218 GKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWT 277

Query: 88  AMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           +M+SG  Q     E+ ++FY+M       + +    +L+A    G ++   R      D 
Sbjct: 278 SMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYG-RWVHEYIDH 336

Query: 144 ELISWNCLMGG-----FVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGD----MSQ 194
             I W+  +G      + K   +  A+++F+ +  +++ +WN  I G A +G     + Q
Sbjct: 337 SRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQ 396

Query: 195 AKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM--PQKNEIS----YNAMVAGY 248
              L +     +  T+ A+ S    +G++DE R++F QM  P  N       Y  MV   
Sbjct: 397 FGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLL 456

Query: 249 VQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDC 300
            ++  ++ A EL   MP   +V     +++     G++    ++   +   +C
Sbjct: 457 CRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPEMLKTVRNFEC 509



 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 96/209 (45%), Gaps = 11/209 (5%)

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           IISGY        A+ ++  +  +G   +  T    L +CA  + +   KQIH   VKT 
Sbjct: 80  IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 139

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
                FV N+ + +Y  CG    A+ VF+ +  +DVVSW  +I+GY + G    A+ +F 
Sbjct: 140 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFL 199

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTC---MIDLL 482
            M    V P+  T V +L AC   G ++ G      ++   S  P  K       ++D+ 
Sbjct: 200 RMD---VAPNAATFVSILGACGKLGCLNLGK----GIHGLVSKYPHGKELVVSNTLMDMY 252

Query: 483 GRAGRLEEAQDLMRNMPFEPPAASWGALL 511
            +   + +A+ L   +P E    SW +++
Sbjct: 253 VKCESVTDAKRLFDEIP-EKDIVSWTSMI 280


>Medtr4g082470.1 | PPR containing plant-like protein | HC |
           chr4:32162319-32165367 | 20130731
          Length = 700

 Score =  281 bits (720), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 182/619 (29%), Positives = 306/619 (49%), Gaps = 42/619 (6%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRN-------ARFSLARDLFDKMPQRDLVSWN 56
           G    A  +F+ +P  +  S+  +I  +  N       + ++LAR         DLV ++
Sbjct: 82  GFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGSF--NDLVVFS 139

Query: 57  VMLTGYVRNRRLGDARRLFDSMPQK---DVVSWNAMLSGYAQNGYADEAREVFYQMPHKN 113
           ++L    + R +    +L  ++ +    D     +++  Y++ G   +AR+VF ++P ++
Sbjct: 140 ILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRS 199

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKS----DWELISWNCLMGGFVKRKMLGAARKLFD 169
            +SW  ++ AYV N   EE   LF+       D  + +   L+    K   L   + +  
Sbjct: 200 VVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHG 259

Query: 170 KMHVRDVVSWNT-----MISGYAQDGDMSQAKNLFDQ------SPHQDVFTWTAMVSGYV 218
            + +++ +  N+     +++ Y + GD+  A+++FD+          D+  WTAM+ GY 
Sbjct: 260 YV-IKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYT 318

Query: 219 QNGMLDEARTFFDQ------MPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSR---NV 269
           Q G    A   F        +P  N ++  ++++   Q   + M + L   +      + 
Sbjct: 319 QRGYPQAALELFTDKKWYRILP--NSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDT 376

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
           S  N+++  Y + G I  A  +F     +D VSW ++ISGYAQ+G   EAL++F  ++ +
Sbjct: 377 SLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRME 436

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGE 388
               +  T    LS CA + A ++G  +HG  +K G   +  +VG ALL  Y KCG    
Sbjct: 437 SFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATS 496

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A  VF+G+ EK+ V+W  MI G    G G  +L +F  M    + P+E+    +L+ACSH
Sbjct: 497 ARMVFDGMGEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSH 556

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           +G+++ G   F  M K+ +  PS KHY CM+DLL RAG L+EA D +  MP +P    +G
Sbjct: 557 SGMVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFG 616

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           A L    +H N + GE A   + ++ P  +  YVL+SNLYA+ GRW     +R  ++  G
Sbjct: 617 AFLHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRG 676

Query: 569 VQKVTGYSWVE--VQNKIH 585
           + KV G S VE  V N  H
Sbjct: 677 LNKVPGVSLVEMDVNNTTH 695



 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 179/431 (41%), Gaps = 58/431 (13%)

Query: 180 NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEI 239
            T+IS YA  G +  A+ LF + P     ++  ++  +  N +     +F++ + +    
Sbjct: 72  TTLISLYASFGFLRHARTLFHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYN-LARTTLG 130

Query: 240 SYNAMVAGYVQSNKMDMARELF-------EAMPSRNVSSW--NTMITGYGQNGDIAQARK 290
           S+N +V   +        R++          + S    S+   +++  Y + G +  ARK
Sbjct: 131 SFNDLVVFSILLKTASQLRDIVLTTKLHCNILKSNAADSFVLTSLVDAYSKCGKLRDARK 190

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +FD +P R  VSW ++I  Y Q    EE L +F  ++      N  T    ++ C  +  
Sbjct: 191 VFDEIPDRSVVSWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGC 250

Query: 351 LELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK------DVVSW 404
           L  GK +HG V+K G E   ++  +LL MY KCG IG+A  VF+           D+V W
Sbjct: 251 LHQGKWVHGYVIKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFW 310

Query: 405 NTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACS-----------HAGLID 453
             MI GY + G+ + AL +F   K   + P+ +T+  +LSAC+           H  ++ 
Sbjct: 311 TAMIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVK 370

Query: 454 RGTE----------------------YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEA 491
            G +                      Y ++   D  V      +  +I    ++G   EA
Sbjct: 371 YGLDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVS----WNSVISGYAQSGSAYEA 426

Query: 492 QDL---MRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYV--LLSN 546
            DL   MR   F P A +   +L A    G  ++G        K    +S +YV   L N
Sbjct: 427 LDLFNRMRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLN 486

Query: 547 LYAASGRWADA 557
            YA  G    A
Sbjct: 487 FYAKCGDATSA 497


>Medtr2g048855.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr2:21642144-21644166 | 20130731
          Length = 625

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/612 (29%), Positives = 306/612 (50%), Gaps = 65/612 (10%)

Query: 1   MRNGHCDSALRVFNT-MPRRS--SVSYNAMISGYLRNARF----SLARDLFDKMPQRDLV 53
           ++ G    A+ + NT  P  S   V Y +++   ++   F    S+   +       D  
Sbjct: 27  LKTGSLSHAIHLLNTSQPTLSLKPVIYASLLQTSVKTNSFHHGASVHAHVLKSGLHSDRF 86

Query: 54  SWNVMLTGYVR---NRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM- 109
             N +LT Y +      L  AR LFDS+  KDV+SW +++SGY ++    ++  +FY+M 
Sbjct: 87  VGNSLLTLYFKLNPGPHLSHARHLFDSLHVKDVISWTSLISGYTRSDLPHQSISLFYEML 146

Query: 110 ---PHKNAISWNGLLAAY-----VHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKML 161
                 NA + + ++ A      V+ GR   +  +     DW  +    L+  +   + +
Sbjct: 147 AFPVQPNAFTLSSVIKACSALNDVNLGRCFHS-MVLTRGFDWNTVVSCSLIDMYGWNRAV 205

Query: 162 GAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNG 221
             AR++FD++ V+D                              DVF WT+++S + +N 
Sbjct: 206 DDARRVFDELFVKD------------------------------DVFCWTSIISCFTRND 235

Query: 222 MLDEARTFFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAMPSR----NVSSW 272
           M  E+  FF  M +   +     ++  ++        +   +E+   +       NV   
Sbjct: 236 MFKESLKFFYVMNRVRGVVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVE 295

Query: 273 NTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
           ++++  YG+ G +  +R +F+ +  +++ VSW A++  Y Q   Y+  L++     R+  
Sbjct: 296 SSLLDMYGKCGCVRHSRIVFERLSDEKNNVSWTAMLGVYCQNKEYQNVLDLV----RERG 351

Query: 332 SLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAND 391
            LN   F   L  C+ +AA+  GK++H   V+ G      + +AL+ +Y KCG +  A  
Sbjct: 352 DLNFYAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVIIESALVDLYAKCGMVDFACT 411

Query: 392 VFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGL 451
           +F  +E +++++WN+M++G+A++G G +AL +FE M   G+KPD IT V VL ACSHAGL
Sbjct: 412 MFASMEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAGL 471

Query: 452 IDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           +D G + F  M  +Y + P  +HY CMIDLLGRAG ++EA+ L+ N       + W ALL
Sbjct: 472 VDEGRKVFTLMG-EYGIKPVVEHYNCMIDLLGRAGFIDEAECLLENADCRYDKSLWAALL 530

Query: 512 GASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
           GA     +    E+ A  + ++EP     YVLL+N+Y   GRW DA  +R  M D GV+K
Sbjct: 531 GACTKCSDYRTAERVARKMIELEPDFHLSYVLLNNIYREVGRWDDALEIRKLMEDRGVKK 590

Query: 572 VTGYSWVEVQNK 583
           + G SW++ QN+
Sbjct: 591 MAGKSWIDSQNR 602



 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 289 RKLFDMMPQRDCVSWAAI---ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
           +KL   +P +   S+ +    I  + +TG    A+++ +   +   SL    ++  L T 
Sbjct: 2   KKLHHHLPVKQTHSFISTDSEILHHLKTGSLSHAIHL-LNTSQPTLSLKPVIYASLLQTS 60

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGS---IGEANDVFEGIEEKDVV 402
               +   G  +H  V+K+G  +  FVGN+LL +YFK      +  A  +F+ +  KDV+
Sbjct: 61  VKTNSFHHGASVHAHVLKSGLHSDRFVGNSLLTLYFKLNPGPHLSHARHLFDSLHVKDVI 120

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSM 462
           SW ++I+GY R     Q++ +F  M    V+P+  T+  V+ ACS    ++ G   F+SM
Sbjct: 121 SWTSLISGYTRSDLPHQSISLFYEMLAFPVQPNAFTLSSVIKACSALNDVNLG-RCFHSM 179

Query: 463 NKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
                   ++     +ID+ G    +++A+ +   +  +     W +++
Sbjct: 180 VLTRGFDWNTVVSCSLIDMYGWNRAVDDARRVFDELFVKDDVFCWTSII 228


>Medtr1g052100.1 | PPR containing plant-like protein | HC |
           chr1:20983048-20985397 | 20130731
          Length = 733

 Score =  280 bits (716), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 170/595 (28%), Positives = 312/595 (52%), Gaps = 24/595 (4%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRN----ARFSLARDLFDKMPQRDLVSWNVMLTGY 62
           D AL VF+ MP+     +NA+I+G   N      F L +D+F    + D  ++  ML+  
Sbjct: 138 DYALHVFDKMPKCYVAVWNAIITGCSDNGCEDVAFRLLKDMFRMNVRGDNYTFATMLSLC 197

Query: 63  VRNRRLGDARRLFDSMPQKDVVSW----NAMLSGYAQNGYADEAREVFYQMPH--KNAIS 116
             +  L   R +   + +   + W    N++++ Y   G   +  +VF +M    +N ++
Sbjct: 198 PLSEGLDYGRHVHSVVVKSGFLDWTSVVNSLITMYFNCGCVVDGYKVFEEMEGGVRNHVT 257

Query: 117 WNGLLAAYVHNGRIEEACRLFDSKSDWEL----ISWNCLMGGFVKRKMLGAARKLFDKM- 171
           +N ++  +V   R E+A  +F       +    +++  ++      ++   A+ L  KM 
Sbjct: 258 YNAMIDGFVSVERFEDAFLMFRDMHRGSVCLSEVTFVSVLSSCCSLRVGCQAQGLAIKMG 317

Query: 172 -HVRDVVSWNTMISGYAQDGDMSQAKNLFD-QSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
                    N  ++ Y+  G +++A+++F+     +D+ +W  MVS + Q  + ++A   
Sbjct: 318 FDCGYTAVNNATMTMYSFFGKVNEARSVFEIMEESRDLVSWNVMVSMFFQENINEDAILT 377

Query: 230 FDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDI 285
           + +M ++    +  +Y ++++       ++M   +        V   N +I+ Y +NG I
Sbjct: 378 YIKMRREGIEPDAFTYGSLLSASDSLQMVEMIHSVLCKNGLNKVEVLNALISSYSRNGQI 437

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
            +A ++F  +  +  +SW +IISG+   G+  + L  F  +       N  + S ALS C
Sbjct: 438 KRAFQIFSDLAYKSLISWNSIISGFVLNGYPMQGLEKFSALLNTHLKPNAYSLSLALSIC 497

Query: 346 ADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWN 405
           +    ++ GKQ+HG +++ G+++   +GNAL+ MY KCG +  +  VF  + E+D ++WN
Sbjct: 498 SCTPDMDHGKQVHGYILRHGFDSEISLGNALVTMYSKCGFLDRSLSVFNEMVERDTITWN 557

Query: 406 TMIAGYARHGFGKQALMVFESMK-TIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK 464
            +I+ Y++HG GK+A+  FE+M+ + G+KPD  T   VLSACSH+GL+D  T  F  M  
Sbjct: 558 AIISAYSQHGQGKEAVHCFEAMQISPGIKPDHATFTAVLSACSHSGLVDDATRIFDIMVN 617

Query: 465 DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPF-EPPAASWGALLGASRIHGNTELG 523
            Y   PS  H++C++DLLGR+G L+EA+ ++ +  F   P   W +L  A  +HGN  LG
Sbjct: 618 IYGFVPSVDHFSCIVDLLGRSGYLDEAERVVTDGYFGAHPNMCW-SLFSACAVHGNLTLG 676

Query: 524 EKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
            K A ++ + E +N  +YVLL+N+ A +G+W +A  +R  ++  G  K  G SW+
Sbjct: 677 RKVARLLLEREQNNPSVYVLLANICAEAGQWEEAAKLRDMVKQFGTTKQPGCSWI 731



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 180/390 (46%), Gaps = 37/390 (9%)

Query: 149 NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF 208
           N L+  + K   L +   +FD +   DV SW T++S  ++  D+  A ++FD+ P   V 
Sbjct: 94  NSLLSLYAKAHDLVSVELVFDDIQCPDVYSWTTVLSAISRLSDIDYALHVFDKMPKCYVA 153

Query: 209 TWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAGYVQSNKMDMARELFEAM 264
            W A+++G   NG  D A      M + N      ++  M++    S  +D  R +   +
Sbjct: 154 VWNAIITGCSDNGCEDVAFRLLKDMFRMNVRGDNYTFATMLSLCPLSEGLDYGRHVHSVV 213

Query: 265 PSRNVSSW----NTMITGYGQNGDIAQARKLFDMMP--QRDCVSWAAIISGYAQTGHYEE 318
                  W    N++IT Y   G +    K+F+ M    R+ V++ A+I G+     +E+
Sbjct: 214 VKSGFLDWTSVVNSLITMYFNCGCVVDGYKVFEEMEGGVRNHVTYNAMIDGFVSVERFED 273

Query: 319 ALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG-CFVGNALL 377
           A  MF ++ R    L+  TF   LS+C    +L +G Q  G  +K G++ G   V NA +
Sbjct: 274 AFLMFRDMHRGSVCLSEVTFVSVLSSC---CSLRVGCQAQGLAIKMGFDCGYTAVNNATM 330

Query: 378 GMYFKCGSIGEANDVFEGIEE-KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
            MY   G + EA  VFE +EE +D+VSWN M++ + +    + A++ +  M+  G++PD 
Sbjct: 331 TMYSFFGKVNEARSVFEIMEESRDLVSWNVMVSMFFQENINEDAILTYIKMRREGIEPDA 390

Query: 437 ITMVGVLSACS--------HAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRL 488
            T   +LSA          H+ L   G      +N              +I    R G++
Sbjct: 391 FTYGSLLSASDSLQMVEMIHSVLCKNGLNKVEVLNA-------------LISSYSRNGQI 437

Query: 489 EEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           + A  +  ++ ++    SW +++    ++G
Sbjct: 438 KRAFQIFSDLAYK-SLISWNSIISGFVLNG 466



 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 44/181 (24%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNA----------------------RFSL 39
           RNG    A ++F+ +  +S +S+N++ISG++ N                         SL
Sbjct: 433 RNGQIKRAFQIFSDLAYKSLISWNSIISGFVLNGYPMQGLEKFSALLNTHLKPNAYSLSL 492

Query: 40  ARDLFDKMPQRD-----------------LVSWNVMLTGYVRNRRLGDARRLFDSMPQKD 82
           A  +    P  D                 +   N ++T Y +   L  +  +F+ M ++D
Sbjct: 493 ALSICSCTPDMDHGKQVHGYILRHGFDSEISLGNALVTMYSKCGFLDRSLSVFNEMVERD 552

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI-----SWNGLLAAYVHNGRIEEACRLF 137
            ++WNA++S Y+Q+G   EA   F  M     I     ++  +L+A  H+G +++A R+F
Sbjct: 553 TITWNAIISAYSQHGQGKEAVHCFEAMQISPGIKPDHATFTAVLSACSHSGLVDDATRIF 612

Query: 138 D 138
           D
Sbjct: 613 D 613



 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALEL-GKQIHGQVVKTG 365
           ++   +T  + E+L +F +I    +  +  T S  ++  +    + + G Q+H   +KT 
Sbjct: 27  LTHLTKTNQFYESLKLFTKIHSSHKP-DHCTLSTTITATSKTRHVTVFGNQLHSFAIKTA 85

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
            +    V N+LL +Y K   +     VF+ I+  DV SW T+++  +R      AL VF+
Sbjct: 86  LKAYSHVANSLLSLYAKAHDLVSVELVFDDIQCPDVYSWTTVLSAISRLSDIDYALHVFD 145

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLID 453
            M    V         +++ CS  G  D
Sbjct: 146 KMPKCYVA----VWNAIITGCSDNGCED 169


>Medtr8g074780.1 | PPR containing plant-like protein | HC |
           chr8:31617312-31615266 | 20130731
          Length = 510

 Score =  279 bits (714), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 251/471 (53%), Gaps = 27/471 (5%)

Query: 172 HVRDVVSWNTMISGYAQDG--DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
           H +D      +I  Y+Q G  ++  A+ +FD    +DVF W  ++ GY   G   EA   
Sbjct: 48  HKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYANMGPFAEALHV 107

Query: 230 FDQM----PQKNEISY-----------NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNT 274
           ++ M       N  +Y           + +    +  N +    E        ++   N 
Sbjct: 108 YNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGNVVKCGLEF-------DLFVGNA 160

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD-GESL 333
            +  Y +  +I  +RK+FD M +RD VSW +++SGY   G+ +EA+ +F ++ RD G   
Sbjct: 161 FVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLRDDGIGF 220

Query: 334 -NRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            + +T    L   A+ A +  G  IH  +VKTG +    VG  L+ +Y  CG I  A  V
Sbjct: 221 PDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYIRMAKAV 280

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F+ I +++V+ W+ +I  Y  HGF ++AL +F  +  +G+  D I  + +LSACSHAG+ 
Sbjct: 281 FDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMH 340

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           + G   F +M + Y V     HY CM+DLLGRAG LE+A +L+++MP +P    +GALLG
Sbjct: 341 EEGWHLFQTM-ETYGVVKGEAHYACMVDLLGRAGNLEKAMELIQSMPIQPGKNVYGALLG 399

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKV 572
           ASRIH N EL E AAE +F ++P+N+G YV+L+ +Y   GRW DA  +R  +R+  ++K 
Sbjct: 400 ASRIHKNIELAELAAEKLFVLDPNNAGRYVILAQMYEDEGRWKDAARLRKIIREKEIKKP 459

Query: 573 TGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLV 623
            GYS VE+++   KF V D  HP    I+  L  L   M +E +     ++
Sbjct: 460 IGYSSVELESGHKKFGVNDETHPLTTEIFETLVSLGRTMGKEAHTQCDAIM 510



 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 31/293 (10%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHKNAISWNGLLAAY-- 124
           AR++FD + ++DV  WN ++ GYA  G   EA  V+  M       N  ++  +L A   
Sbjct: 73  ARKVFDDLSERDVFCWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGA 132

Query: 125 ---VHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT 181
                 GRI     +     +++L   N  +  + K K + A+RK+FD+M  RD+VSWN+
Sbjct: 133 ERDCLKGRIIHG-NVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNS 191

Query: 182 MISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY 241
           M+SGY  +G + +A  LF      D         G+  N  L    T      +K +I  
Sbjct: 192 MMSGYIANGYVDEAVMLFCDMLRDDGI-------GFPDNATL---VTVLPAFAEKADIHA 241

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
              +  Y+    M +           + +    +IT Y   G I  A+ +FD +P R+ +
Sbjct: 242 GYWIHCYIVKTGMKL-----------DPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVI 290

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELG 354
            W+AII  Y   G  +EAL+MF ++   G  L+   F   LS C+     E G
Sbjct: 291 VWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEG 343



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 142/338 (42%), Gaps = 70/338 (20%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQR---------- 50
           + A +VF+ +  R    +N +I GY     F+ A  +++ M      P R          
Sbjct: 71  EHARKVFDDLSERDVFCWNNVIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKAC 130

Query: 51  -----------------------DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWN 87
                                  DL   N  +  Y + + +  +R++FD M ++D+VSWN
Sbjct: 131 GAERDCLKGRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWN 190

Query: 88  AMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELIS 147
           +M+SGY  NGY DEA  +F  M   + I        +  N  +      F  K+D     
Sbjct: 191 SMMSGYIANGYVDEAVMLFCDMLRDDGI-------GFPDNATLVTVLPAFAEKADIHAGY 243

Query: 148 W-NCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQD 206
           W +C +   VK  M     KL       D      +I+ Y+  G +  AK +FDQ P ++
Sbjct: 244 WIHCYI---VKTGM-----KL-------DPAVGCGLITLYSNCGYIRMAKAVFDQIPDRN 288

Query: 207 VFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARELFE 262
           V  W+A++  Y  +G   EA + F Q+ +     + I + ++++    +   +    LF+
Sbjct: 289 VIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQ 348

Query: 263 AMPSRNV----SSWNTMITGYGQNGDIAQARKLFDMMP 296
            M +  V    + +  M+   G+ G++ +A +L   MP
Sbjct: 349 TMETYGVVKGEAHYACMVDLLGRAGNLEKAMELIQSMP 386



 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 48/292 (16%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           NA ++ Y +      +R +FD+M +RD+VSWN M++GY+ N  + +A  LF  M + D +
Sbjct: 159 NAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDMLRDDGI 218

Query: 85  SW--NA----MLSGYAQN-----GYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEA 133
            +  NA    +L  +A+      GY      V   M    A+   GL+  Y + G I  A
Sbjct: 219 GFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGC-GLITLYSNCGYIRMA 277

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
             +FD   D  +I W+ ++  +               MH            G+AQ+  +S
Sbjct: 278 KAVFDQIPDRNVIVWSAIIRCY--------------GMH------------GFAQEA-LS 310

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ----KNEISYNAMVAGYV 249
             + L +   H D   + +++S     GM +E    F  M      K E  Y  MV    
Sbjct: 311 MFRQLVELGLHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVKGEAHYACMVDLLG 370

Query: 250 QSNKMDMARELFEAM---PSRNVSSWNTMITGYGQNGDIAQ--ARKLFDMMP 296
           ++  ++ A EL ++M   P +NV       +   +N ++A+  A KLF + P
Sbjct: 371 RAGNLEKAMELIQSMPIQPGKNVYGALLGASRIHKNIELAELAAEKLFVLDP 422



 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCG--SIGEANDVFEGIEEKDVVSWNTMIAGYA 412
           KQ H Q++  G++   F+   L+  Y + G  ++  A  VF+ + E+DV  WN +I GYA
Sbjct: 37  KQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYA 96

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSAC 446
             G   +AL V+ +M+  G  P+  T   VL AC
Sbjct: 97  NMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKAC 130


>Medtr5g043780.1 | PPR containing plant-like protein | HC |
           chr5:19239453-19241320 | 20130731
          Length = 525

 Score =  278 bits (712), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/492 (34%), Positives = 261/492 (53%), Gaps = 29/492 (5%)

Query: 126 HNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISG 185
           H+  +  ACR+F+   +  +  +N L+  F+      +A ++F KM   ++   N     
Sbjct: 53  HHESLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDN----- 107

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMV 245
           Y     +       D S       +  M+ GY     L      FD          N+++
Sbjct: 108 YTIPYVLKACGTFHDCS-------FGKMIHGYSSKLGL-----VFDIYVG------NSLM 149

Query: 246 AGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAA 305
           A Y     +  AR +F+ +PS NV SW+ MI+GY + GD+  AR  FD  P++D   W A
Sbjct: 150 AMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGA 209

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           +ISGY Q   ++E+L +F  ++      + S F   LS CA + ALE+G  IH  + +  
Sbjct: 210 MISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLK 269

Query: 366 Y-ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVF 424
                  +  +LL MY KCG++  A  +F+ +  +DVV WN MI+G A HG GK AL +F
Sbjct: 270 LVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLF 329

Query: 425 ESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGR 484
             M+ +GVKPD+IT + V +ACS++G+   G      M   Y++ P S+HY C++DLL R
Sbjct: 330 YDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEHYGCLVDLLSR 389

Query: 485 AGRLEEAQDLMRNMPF----EPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPH-NSG 539
           AG  EEA  ++R +           +W A L A   HG T+L E AAE V +++ H +SG
Sbjct: 390 AGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHIHSG 449

Query: 540 MYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDR 599
           +YVLLSNLYAASG+ +DA  +R  M+  G  K  G S VE+   I +F  G+  HP+ + 
Sbjct: 450 VYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEIDGVISEFIAGEKTHPQMEE 509

Query: 600 IYAFLEELDLKM 611
           I++ L+++ +++
Sbjct: 510 IHSVLKKMHMQL 521



 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 19/301 (6%)

Query: 64  RNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM------PHKNAISW 117
            +  L  A R+F+ +    V  +N ++  +  N     A +VF +M      P    I +
Sbjct: 53  HHESLTYACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPY 112

Query: 118 NGLLAAYVHNGRIEEACRLFDSKSD--WELISWNCLMGGFVKRKMLGAARKLFDKMHVRD 175
                   H+    +    + SK    +++   N LM  +     + AAR +FD++   +
Sbjct: 113 VLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLN 172

Query: 176 VVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           VVSW+ MISGYA+ GD+  A+  FD++P +D   W AM+SGYVQN    E+   F  M  
Sbjct: 173 VVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQL 232

Query: 236 KNEISYNAMVAGYVQSNKMDMAREL----------FEAMPSRNVSSWNTMITGYGQNGDI 285
            + +   ++    + +     A E+           + +P  +V    +++  Y + G++
Sbjct: 233 TDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVP-LSVRLSTSLLDMYAKCGNL 291

Query: 286 AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTC 345
             A++LFD M  RD V W A+ISG A  G  + AL +F ++++ G   +  TF    + C
Sbjct: 292 ELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTAC 351

Query: 346 A 346
           +
Sbjct: 352 S 352



 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 13/222 (5%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N++++ Y        AR +FD++P  ++VSW+VM++GY +   +  AR  FD  P+KD  
Sbjct: 146 NSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKG 205

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNAIS----WNGLLAAYVHNGRIEEACRLFDSK 140
            W AM+SGY QN    E+  +F  M   + +     +  +L+A  H G +E    +    
Sbjct: 206 IWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHL 265

Query: 141 SDWELISWNC-----LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +  +L+  +      L+  + K   L  A++LFD M++RDVV WN MISG A  GD   A
Sbjct: 266 NQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGA 325

Query: 196 KNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM 233
             LF          D  T+ A+ +    +GM  E     D+M
Sbjct: 326 LKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKM 367



 Score = 76.6 bits (187), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 145/324 (44%), Gaps = 37/324 (11%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G   +A  VF+ +P  + VS++ MISGY +      AR  FD+ P++D   W  M++GYV
Sbjct: 156 GDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYV 215

Query: 64  RNRRLGDARRLFDSMPQKDVVS----WNAMLSGYAQNGYADEAREVFYQMPHKNAISWN- 118
           +N    ++  LF  M   D+V     + ++LS  A  G  +    +   +     +  + 
Sbjct: 216 QNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSV 275

Query: 119 ----GLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF---DKM 171
                LL  Y   G +E A RLFDS +  +++ WN ++ G         A KLF   +K+
Sbjct: 276 RLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKV 335

Query: 172 HVR-DVVSWNTMI-----SGYAQDG-----DMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
            V+ D +++  +      SG A +G      M    N+  +S H     +  +V    + 
Sbjct: 336 GVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPKSEH-----YGCLVDLLSRA 390

Query: 221 GMLDEARTFFDQMP-----QKNEISYNAMVAG---YVQSNKMDMARELFEAMPSRNVSSW 272
           G+ +EA     ++       +  +++ A ++    + ++   ++A E    + +   S  
Sbjct: 391 GLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAAEKVLQLDNHIHSGV 450

Query: 273 NTMITG-YGQNGDIAQARKLFDMM 295
             +++  Y  +G  + AR++ DMM
Sbjct: 451 YVLLSNLYAASGKHSDARRVRDMM 474


>Medtr2g016780.1 | editing factor, putative | HC |
           chr2:5197710-5195940 | 20130731
          Length = 551

 Score =  278 bits (710), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/519 (30%), Positives = 267/519 (51%), Gaps = 40/519 (7%)

Query: 74  LFDSMPQKDVVSWNAMLSG-YAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEE 132
           L  +    +++S ++ L G Y+       A  +F+ +   N  ++N ++   V+NG  + 
Sbjct: 40  LLTTGTNTNILSLSSKLVGMYSSCTDLKSATLLFHNIHKPNVFAFNWMILGMVYNGYFDN 99

Query: 133 ACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDM 192
           A   F    D  LI  N    G V +  +G                            DM
Sbjct: 100 ALFYFRLMRDIGLIG-NKFTFGIVIKTCVGLM--------------------------DM 132

Query: 193 SQAKN----LFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGY 248
            + K     + +     DV     ++  Y + G +D A   FD M +++  S+ +M+ G+
Sbjct: 133 KKGKQVHGMICEMGLMNDVLIGNGLIDMYGKCGSVDYACRVFDGMSERDVASWTSMICGF 192

Query: 249 VQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQR----DC 300
             + +++ A  LFE M       N  +WN +I  Y + GD  +A    + M +     D 
Sbjct: 193 CNTGRIEEALVLFERMKMEGYEPNDFTWNAIIATYARLGDSKKAFGFMERMQKEGFIPDV 252

Query: 301 VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQ 360
           V+W A+ISG+AQ   + E   +F E+   G   N+ T +  L  C  + +++ G+++HG 
Sbjct: 253 VAWNALISGFAQNHQFRETFTVFREMLVSGICPNQVTIAALLPACGSVGSVKWGREVHGF 312

Query: 361 VVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQA 420
           + + G++   F+ +AL+ MY KCGS+ +A +VF+ I+ K+V SWN MI  + + G    A
Sbjct: 313 ICRKGFDANVFIASALIDMYSKCGSLKDARNVFDKIQCKNVASWNAMIDCFGKCGMVDSA 372

Query: 421 LMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMID 480
           L +F  MK  G++P+E+T   +LSACSH+G +++G E F  M + Y V    +HY C++D
Sbjct: 373 LELFTKMKEEGLQPNEVTFACILSACSHSGSVEKGLEIFTLMKECYGVEICKEHYACIVD 432

Query: 481 LLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM 540
           LL R+G++ EA + ++ MP +   +  GA L   +IHG  +L +K AE + +M+ + SG 
Sbjct: 433 LLCRSGKIVEAYEFIKAMPIQVTESIAGAFLNGCKIHGRKDLAKKMAEEIMRMQLNGSGS 492

Query: 541 YVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
           +V LSN+YAA G W +AGN+R  M++  V K  G SW+E
Sbjct: 493 FVTLSNIYAAEGDWEEAGNVRKVMKERNVNKWPGSSWLE 531



 Score =  123 bits (308), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 64/367 (17%)

Query: 51  DLVSWNVMLTG-YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM 109
           +++S +  L G Y     L  A  LF ++ + +V ++N M+ G   NGY D A   F  M
Sbjct: 48  NILSLSSKLVGMYSSCTDLKSATLLFHNIHKPNVFAFNWMILGMVYNGYFDNALFYFRLM 107

Query: 110 PH---------------------------------------KNAISWNGLLAAYVHNGRI 130
                                                     + +  NGL+  Y   G +
Sbjct: 108 RDIGLIGNKFTFGIVIKTCVGLMDMKKGKQVHGMICEMGLMNDVLIGNGLIDMYGKCGSV 167

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR----DVVSWNTMISGY 186
           + ACR+FD  S+ ++ SW  ++ GF     +  A  LF++M +     +  +WN +I+ Y
Sbjct: 168 DYACRVFDGMSERDVASWTSMICGFCNTGRIEEALVLFERMKMEGYEPNDFTWNAIIATY 227

Query: 187 AQDGDMSQAKNLFDQSPHQ----DVFTWTAMVSGYVQNGMLDEARTFFDQM------PQK 236
           A+ GD  +A    ++   +    DV  W A++SG+ QN    E  T F +M      P +
Sbjct: 228 ARLGDSKKAFGFMERMQKEGFIPDVVAWNALISGFAQNHQFRETFTVFREMLVSGICPNQ 287

Query: 237 NEISYNAMVAGYVQSNKMD------MARELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
             I+      G V S K        + R+ F+A    NV   + +I  Y + G +  AR 
Sbjct: 288 VTIAALLPACGSVGSVKWGREVHGFICRKGFDA----NVFIASALIDMYSKCGSLKDARN 343

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           +FD +  ++  SW A+I  + + G  + AL +F ++K +G   N  TF+C LS C+   +
Sbjct: 344 VFDKIQCKNVASWNAMIDCFGKCGMVDSALELFTKMKEEGLQPNEVTFACILSACSHSGS 403

Query: 351 LELGKQI 357
           +E G +I
Sbjct: 404 VEKGLEI 410



 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 156/348 (44%), Gaps = 47/348 (13%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNV 57
           + G  D A RVF+ M  R   S+ +MI G+    R   A  LF++M     + +  +WN 
Sbjct: 163 KCGSVDYACRVFDGMSERDVASWTSMICGFCNTGRIEEALVLFERMKMEGYEPNDFTWNA 222

Query: 58  MLTGYVRNRRLGDARRLFDSMPQ-------KDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           ++  Y    RLGD+++ F  M +        DVV+WNA++SG+AQN    E   VF +M 
Sbjct: 223 IIATYA---RLGDSKKAFGFMERMQKEGFIPDVVAWNALISGFAQNHQFRETFTVFREML 279

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
                  +G+    V    +  AC    S      + W   + GF+ RK   A       
Sbjct: 280 V------SGICPNQVTIAALLPACGSVGS------VKWGREVHGFICRKGFDA------- 320

Query: 171 MHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
               +V   + +I  Y++ G +  A+N+FD+   ++V +W AM+  + + GM+D A   F
Sbjct: 321 ----NVFIASALIDMYSKCGSLKDARNVFDKIQCKNVASWNAMIDCFGKCGMVDSALELF 376

Query: 231 DQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMP-----SRNVSSWNTMITGYGQ 281
            +M     Q NE+++  +++    S  ++   E+F  M            +  ++    +
Sbjct: 377 TKMKEEGLQPNEVTFACILSACSHSGSVEKGLEIFTLMKECYGVEICKEHYACIVDLLCR 436

Query: 282 NGDIAQARKLFDMMPQRDCVSWA-AIISGYAQTGHYEEALNMFIEIKR 328
           +G I +A +    MP +   S A A ++G    G  + A  M  EI R
Sbjct: 437 SGKIVEAYEFIKAMPIQVTESIAGAFLNGCKIHGRKDLAKKMAEEIMR 484



 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 171/407 (42%), Gaps = 85/407 (20%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D++  N ++  Y +   +  A R+FD M ++DV SW +M+ G+   G  +EA  +F +M 
Sbjct: 150 DVLIGNGLIDMYGKCGSVDYACRVFDGMSERDVASWTSMICGFCNTGRIEEALVLFERMK 209

Query: 111 ----HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARK 166
                 N  +WN ++A Y          RL DSK                  K  G   +
Sbjct: 210 MEGYEPNDFTWNAIIATYA---------RLGDSK------------------KAFGFMER 242

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ------SPHQ--------------- 205
           +  +  + DVV+WN +ISG+AQ+    +   +F +       P+Q               
Sbjct: 243 MQKEGFIPDVVAWNALISGFAQNHQFRETFTVFREMLVSGICPNQVTIAALLPACGSVGS 302

Query: 206 ------------------DVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG 247
                             +VF  +A++  Y + G L +AR  FD++  KN  S+NAM+  
Sbjct: 303 VKWGREVHGFICRKGFDANVFIASALIDMYSKCGSLKDARNVFDKIQCKNVASWNAMIDC 362

Query: 248 YVQSNKMDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVS- 302
           + +   +D A ELF  M       N  ++  +++    +G + +  ++F +M +   V  
Sbjct: 363 FGKCGMVDSALELFTKMKEEGLQPNEVTFACILSACSHSGSVEKGLEIFTLMKECYGVEI 422

Query: 303 ----WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIH 358
               +A I+    ++G   EA      IK     +  S     L+ C      +L K++ 
Sbjct: 423 CKEHYACIVDLLCRSGKIVEAYEF---IKAMPIQVTESIAGAFLNGCKIHGRKDLAKKMA 479

Query: 359 GQVVKTGYE-TGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSW 404
            ++++     +G FV   L  +Y   G   EA +V + ++E++V  W
Sbjct: 480 EEIMRMQLNGSGSFV--TLSNIYAAEGDWEEAGNVRKVMKERNVNKW 524



 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 5/176 (2%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCF-VGNALLGMYFKCGSIGEANDVFEGI 396
           F+  L  C    AL+ GKQIH  ++ TG  T    + + L+GMY  C  +  A  +F  I
Sbjct: 17  FALYLQKCLKSKALKPGKQIHAMLLTTGTNTNILSLSSKLVGMYSSCTDLKSATLLFHNI 76

Query: 397 EEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID-RG 455
            + +V ++N MI G   +G+   AL  F  M+ IG+  ++ T   V+  C   GL+D + 
Sbjct: 77  HKPNVFAFNWMILGMVYNGYFDNALFYFRLMRDIGLIGNKFTFGIVIKTC--VGLMDMKK 134

Query: 456 TEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
            +  + M  +  +         +ID+ G+ G ++ A  +   M  E   ASW +++
Sbjct: 135 GKQVHGMICEMGLMNDVLIGNGLIDMYGKCGSVDYACRVFDGMS-ERDVASWTSMI 189


>Medtr5g024360.1 | PPR containing plant-like protein | HC |
           chr5:9808546-9804666 | 20130731
          Length = 611

 Score =  276 bits (706), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 176/575 (30%), Positives = 280/575 (48%), Gaps = 45/575 (7%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRI 130
           A  LF  +   +V  +N+M+ GYA++     +  ++ QM        NG    +     +
Sbjct: 60  ANLLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQ------NGYSPDHFTFPFV 113

Query: 131 EEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDG 190
            +AC        ++ +S  C+    +K                 +V     +++ Y +  
Sbjct: 114 LKACSFI-----YDQVSGKCVHSCILKSGFEA------------NVYVATGLLNMYVECK 156

Query: 191 DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM----PQKNEIS-YNAMV 245
           +M     +FD+ P  +V  WT +++GYV N    EA   F +M     + NE++  NA++
Sbjct: 157 NMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALI 216

Query: 246 AG----------YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM 295
           A           +V         + F    + NV     ++  Y + G +  AR+LF+ M
Sbjct: 217 ACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKM 276

Query: 296 PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
           P+R+ V+W  +I+ Y Q   Y EAL +F  +  +G   +++TF   LS CA    L LG+
Sbjct: 277 PERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGE 336

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE-GIEEKDVVSWNTMIAGYARH 414
            +H  ++K+       +  ALL MY K G +G A  +F   +E+KDVV W +MI   A H
Sbjct: 337 TVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIH 396

Query: 415 GFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
           G G +AL +F+ M+    + PD IT +GVL ACSH GL++   + F  M K Y + P  +
Sbjct: 397 GHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKE 456

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY+CM+DLL RAG   EA+ LM  M   P  A WGALL   +IH N  +  +    + ++
Sbjct: 457 HYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAEL 516

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCF 593
           EP  SG+Y LLSN+YA SG+W +    R  M+   + K  G+S VE++    + T   CF
Sbjct: 517 EPIQSGIYALLSNIYANSGKWEEVNRTRKMMKHKRIAKTIGHSSVEMKVSSDE-TQFMCF 575

Query: 594 HP----EKDRIYAFLEELDLKMRREGYVSSTKLVL 624
           H     E     A   E  + +++ G++ + KL L
Sbjct: 576 HKSSAIELINFGAISRESIIAVKKCGHLKNDKLRL 610



 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 195/453 (43%), Gaps = 89/453 (19%)

Query: 24  YNAMISGYLRNARFSLARDLFDKMPQR--------------------DLVS--------- 54
           +N+MI GY ++   +++  L+ +M Q                     D VS         
Sbjct: 75  FNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCIL 134

Query: 55  -----WNV-----MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEARE 104
                 NV     +L  YV  + +    ++FD +P+ +VV+W  +++GY  N    EA E
Sbjct: 135 KSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALE 194

Query: 105 VFYQM----PHKNAISW-NGLLAAY----VHNGRI--EEACRL----FDSKSDWELISWN 149
           VF +M       N ++  N L+A      V  GR   E  C+     F   S+  +I   
Sbjct: 195 VFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILAT 254

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFT 209
            ++  + K   L  AR+LF+KM  R++V+WN MI+ Y Q    ++A  LF        F 
Sbjct: 255 AIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLF--------FY 306

Query: 210 WTAMVSGYVQNGMLDEARTFFDQM---PQKNEISYNAMVAGYVQSNKMDMARELFEAMPS 266
             A       NG   +  TF   +    ++  ++    V  Y+  + M           +
Sbjct: 307 MLA-------NGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNM-----------A 348

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIE 325
           ++++    ++  Y +NG++  A+K+F + + ++D V W ++I+  A  GH  EAL++F +
Sbjct: 349 KDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLF-Q 407

Query: 326 IKRDGESL--NRSTFSCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFK 382
           I ++  SL  +  T+   L  C+ +  +E  ++    + K+ G        + ++ +  +
Sbjct: 408 IMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSR 467

Query: 383 CGSIGEANDVFEGIE-EKDVVSWNTMIAGYARH 414
            G   EA  + E +    ++  W  ++ G   H
Sbjct: 468 AGHFREAEKLMETMSIRPNIAIWGALLNGCQIH 500



 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 171/385 (44%), Gaps = 75/385 (19%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM----PQRDLVSWNVMLTGY 62
           +S L+VF+ +P+ + V++  +I+GY+ N +   A ++F +M     + + V+    L   
Sbjct: 159 ESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIAC 218

Query: 63  VRNRRLGDARRL-----------FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH 111
            R R +   R +           F      +V+   A++  YA+ G+ + ARE+F +MP 
Sbjct: 219 ARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPE 278

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLF----------DSKSDWELISW------------- 148
           +N ++WN ++ AY    R  EA  LF          D  +   ++S              
Sbjct: 279 RNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETV 338

Query: 149 ----------------NCLMGGFVKRKMLGAARKLFDK-MHVRDVVSWNTMISGYAQDGD 191
                             L+  + K   LG+A+K+F+  +  +DVV W +MI+  A  G 
Sbjct: 339 HAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGH 398

Query: 192 MSQAKNLF-----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM-------PQKNEI 239
            ++A +LF     D S   D  T+  ++      G+++EA+  F+ M       P+K   
Sbjct: 399 GNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEH- 457

Query: 240 SYNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQAR----KLFDM 294
            Y+ MV    ++     A +L E M  R N++ W  ++ G   + +I  A     +L ++
Sbjct: 458 -YSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAEL 516

Query: 295 MPQRDCVSWAAIISGYAQTGHYEEA 319
            P +  + +A + + YA +G +EE 
Sbjct: 517 EPIQSGI-YALLSNIYANSGKWEEV 540



 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 51/235 (21%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM------PQ------ 49
           + G  + A  +FN MP R+ V++N MI+ Y +  R++ A  LF  M      P       
Sbjct: 262 KCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLS 321

Query: 50  ---------------------------RDLVSWNVMLTGYVRNRRLGDARRLF-DSMPQK 81
                                      +D+     +L  Y +N  LG A+++F +S+ +K
Sbjct: 322 VLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGELGSAQKIFNNSLEKK 381

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA-----ISWNGLLAAYVHNGRIEEACRL 136
           DVV W +M++  A +G+ +EA  +F  M   ++     I++ G+L A  H G +EEA + 
Sbjct: 382 DVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVLFACSHVGLVEEAQKQ 441

Query: 137 FD--SKSDWELIS---WNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTMISG 185
           F+  +KS   L     ++C++    +      A KL + M +R ++  W  +++G
Sbjct: 442 FNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLMETMSIRPNIAIWGALLNG 496


>Medtr2g009760.1 | PPR containing plant-like protein | HC |
           chr2:2078277-2080236 | 20130731
          Length = 622

 Score =  275 bits (704), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/532 (30%), Positives = 263/532 (49%), Gaps = 88/532 (16%)

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
           C  F + S  + I  N ++  + K   + +AR++FD M  RD ++WN+MI+ Y Q+G + 
Sbjct: 90  CLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLV 149

Query: 194 QAKNL--------FDQSP------------------------------------HQDVFT 209
           +A  +        F   P                                       VF 
Sbjct: 150 EALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFL 209

Query: 210 WTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV 269
            TA V  Y + G    AR+ FD+M  KNE+S+ A+++G   +   D+A   +  M    V
Sbjct: 210 STAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGV 269

Query: 270 SS-------------------WNTMITGY-----------------------GQNGDIAQ 287
           S                    +   I GY                       GQ+  +A+
Sbjct: 270 SPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAE 329

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD 347
             ++F+    RD V W++II  YA+ G  ++AL +F +++ +    N  T    +S C +
Sbjct: 330 --RIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTN 387

Query: 348 IAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTM 407
           +++ + G  IHG ++K G     FV NAL+ MY KCGS+ ++  +F  +  +D V+WN+M
Sbjct: 388 LSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSM 447

Query: 408 IAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYS 467
           I+ Y  HG+G+QAL  F  MK  GVK D +T + VLSAC+HAGL+  G + F  +N D  
Sbjct: 448 ISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCE 507

Query: 468 VTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAA 527
           +  + +HY C+IDL GR+G+LE+A +++R MP +P A  W +L+ + ++HG  ++ E  +
Sbjct: 508 IPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLS 567

Query: 528 EMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVE 579
             + + EP+N+  Y LLS ++A  GRW D   +R  M+   ++K  G+S +E
Sbjct: 568 SQLIRSEPNNAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619



 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 201/459 (43%), Gaps = 73/459 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDS------M 78
           N++IS Y +      AR +FD MP RD ++WN M+  Y++N  L +A ++         +
Sbjct: 105 NSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFL 164

Query: 79  PQKDVVS-------------W-------------------------NAMLSGYAQNGYAD 100
           P+ ++++             W                          A +  Y + G + 
Sbjct: 165 PKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSL 224

Query: 101 EAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD-------SKSDWELISW--NCL 151
            AR VF +M  KN +SW  +++   +N   + A   +        S +   LI+    C 
Sbjct: 225 MARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACA 284

Query: 152 MGGFVK--RKMLGAA-RKLFDKMHVRDVVSWNTMISGYAQDG-DMSQAKNLFDQSPHQDV 207
             GFVK  +++ G A R+ FD  H         +I  Y + G  +  A+ +F+ S  +DV
Sbjct: 285 RPGFVKYGKEIHGYAFRRGFDSCHSFS----PALIYLYCECGQSLHLAERIFEGSSLRDV 340

Query: 208 FTWTAMVSGYVQNGMLDEARTFFDQM-PQKNEISYNAMVAGYVQSNKMDMARE------- 259
             W++++  Y + G  D+A   F++M  ++ E +Y  ++A       +   +        
Sbjct: 341 VLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGY 400

Query: 260 LFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
           + +     ++   N +I  Y + G +  +RK+F  MP RD V+W ++IS Y   G+ E+A
Sbjct: 401 ILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN--ALL 377
           L  F E+K  G  L+  TF   LS C     +  G+Q+  Q V    E    + +   L+
Sbjct: 461 LQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQ-VNADCEIPITIEHYACLI 519

Query: 378 GMYFKCGSIGEANDVFEGIEEKDVVS-WNTMIAGYARHG 415
            ++ + G + +A ++   +  K     W+++++    HG
Sbjct: 520 DLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHG 558



 Score =  116 bits (290), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 176/396 (44%), Gaps = 77/396 (19%)

Query: 7   DSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDK------MPQRDLVS------ 54
           +SA +VF+TMP R ++++N+MI+ YL+N     A  +         +P+ +L++      
Sbjct: 118 ESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPKPELLASMVSMC 177

Query: 55  -------WN--------VMLTGYVRNR--------------RLGD---ARRLFDSMPQKD 82
                  W         V++ G +R +              R GD   AR +FD M  K+
Sbjct: 178 GREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKN 237

Query: 83  VVSWNAMLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEACRL-- 136
            VSW A++SG A N   D A   + +M       N ++   LLAA    G ++    +  
Sbjct: 238 EVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHG 297

Query: 137 ------FDSKSDWE--LISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
                 FDS   +   LI   C  G     + L  A ++F+   +RDVV W+++I  YA+
Sbjct: 298 YAFRRGFDSCHSFSPALIYLYCECG-----QSLHLAERIFEGSSLRDVVLWSSIIGSYAR 352

Query: 189 DGDMSQAKNLFD----QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY--- 241
            G+  +A  LF+    +    +  T  A++S                 +  K  I +   
Sbjct: 353 RGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYI-LKFGIGFSIF 411

Query: 242 --NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR- 298
             NA++  Y +   +D +R++F  MPSR+  +WN+MI+ YG +G   QA + F  M +R 
Sbjct: 412 VCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERG 471

Query: 299 ---DCVSWAAIISGYAQTGHYEEALNMFIEIKRDGE 331
              D V++ A++S     G   E   +F ++  D E
Sbjct: 472 VKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCE 507



 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 40/229 (17%)

Query: 2   RNGHCDSALRVFNTM-------------------PRRSSVSYNAMISGYLRNARFSLARD 42
           R G  D AL++FN M                      SS  +  +I GY+   +F +   
Sbjct: 352 RRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYI--LKFGIGFS 409

Query: 43  LFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEA 102
           +F           N ++  Y +   L D+R++F  MP +D V+WN+M+S Y  +GY ++A
Sbjct: 410 IF---------VCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460

Query: 103 REVFYQMPHK----NAISWNGLLAAYVHNGRIEEACRLFDS-KSDWELI----SWNCLMG 153
            + FY+M  +    +A+++  +L+A  H G + E  +LF+   +D E+      + CL+ 
Sbjct: 461 LQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLID 520

Query: 154 GFVKRKMLGAARKLFDKMHVRDVVS-WNTMISGYAQDGDMSQAKNLFDQ 201
              +   L  A ++   M ++     W++++S     G +  A++L  Q
Sbjct: 521 LHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQ 569



 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 2/142 (1%)

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTF--SCALSTCADIAALELGKQIHGQVVKT 364
           I      G Y + L  F ++       N   F     +  C+       G Q+H     T
Sbjct: 36  IKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFIT 95

Query: 365 GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVF 424
           G  T   V N+++ MY K   I  A  VF+ +  +D ++WN+MI  Y ++G   +AL + 
Sbjct: 96  GSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQML 155

Query: 425 ESMKTIGVKPDEITMVGVLSAC 446
           +    +G  P    +  ++S C
Sbjct: 156 KDFYFLGFLPKPELLASMVSMC 177


>Medtr2g022040.1 | PPR containing plant-like protein | HC |
           chr2:7535483-7534090 | 20130731
          Length = 424

 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 211/366 (57%), Gaps = 15/366 (4%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  + +H   ++  +       N +L MYF+CGS+ +A DVF+ + E D+
Sbjct: 74  MHVCGKTKSLEEARVVHRHALQHLHPLTVSTDNRVLEMYFECGSLDDAIDVFKSMPEYDL 133

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +W+TMI   A++GF + ++ +F   K +G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 134 TTWHTMIMQLAKNGFPEDSIDIFTQFKNMGLKPDGQMFIGVFGACSMLGDISEGMLHFES 193

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M+KDY + P+  HY  +++++   G L+EA + +  MP EP    W  L+ + R+HGN E
Sbjct: 194 MSKDYGIVPTMAHYVSLVEMIASIGHLDEALEFIEKMPMEPSVEVWETLMNSCRVHGNIE 253

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG++ AE+V K++P             +     A AG +   + +    K T  + +EVQ
Sbjct: 254 LGDRCAELVMKLDP-------------SRLNEKAKAGLLLGEISE--QNKSTINNHLEVQ 298

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           +++H+F   D + P+  +I A L  L ++M+  GY++ T  VLHD+++E KE  L  H+ 
Sbjct: 299 SQVHEFRDRDAYDPKNYKICALLRGLRVQMKEAGYIADTGHVLHDIDQEGKEDALLAHNV 358

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LAVA G+        I+VI+N R C DCH A+K ISK+VGR  I+RD+ RFHH N G+C
Sbjct: 359 RLAVAQGLFNSKVRSTIKVIQNRRFCGDCHTAVKFISKLVGREFIIRDAKRFHHMNNGLC 418

Query: 702 SCGDYW 707
           SC  YW
Sbjct: 419 SCHGYW 424


>Medtr3g466010.1 | PPR containing plant-like protein | HC |
           chr3:27120018-27122473 | 20130731
          Length = 536

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 208/383 (54%), Gaps = 4/383 (1%)

Query: 237 NEISYNAMVAGYVQS-NKMDMARELFEAMPSR---NVSSWNTMITGYGQNGDIAQARKLF 292
           N    NA++  Y +  +  + A+ +FE        +V +WN+M+ G  + G++  A K+F
Sbjct: 144 NVFVRNALIHFYFEGFDVSEYAKRVFEEEVDEVCSDVVTWNSMLAGLVRKGEVRDAEKMF 203

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALE 352
           D MP+RD VSW+++I GY Q G  E+ L  F  ++  G   N S     LS  A +  L 
Sbjct: 204 DEMPKRDVVSWSSMIMGYVQNGKLEDGLECFRLMREKGIRPNESILVTMLSASAQLGLLG 263

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G+ +H  +    +     +G  L+ MY KCG I E+ D+F+G+ E+D+ +W  MI G A
Sbjct: 264 WGRFVHSTIESLRFRISVAIGTGLVDMYAKCGCIEESRDLFDGMMERDIWTWTVMICGLA 323

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
            H   K+AL++F      G +P  +  VGVL+ACS AGL+  G  YF  M   Y ++P  
Sbjct: 324 SHDRAKEALVLFREFIREGFRPVNVIFVGVLNACSRAGLVSEGRYYFKLMVDGYGISPEM 383

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
           +HY CM+DL  RAG ++EA  L+  M  EP    W  LL A  IHG  E+GEK    + K
Sbjct: 384 EHYGCMVDLFARAGLIDEAVRLIETMTVEPDPVMWATLLDACEIHGFVEMGEKIGNKLIK 443

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDC 592
           M+P + G YV L+ +YA S +W D   +R  M +    KV G+S +EV++++H+F  GD 
Sbjct: 444 MDPTHDGHYVQLAGIYAKSRKWDDVVRVRRLMVERVPIKVAGWSLIEVEDRVHRFVAGDR 503

Query: 593 FHPEKDRIYAFLEELDLKMRREG 615
            H     IY  LE + L +   G
Sbjct: 504 DHDHSSDIYKMLEIIGLMVSEAG 526



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 140/310 (45%), Gaps = 44/310 (14%)

Query: 25  NAMISGYLRNARFS-LARDLFDKMPQR---DLVSWNVMLTGYVRNRRLGDARRLFDSMPQ 80
           NA+I  Y      S  A+ +F++       D+V+WN ML G VR   + DA ++FD MP+
Sbjct: 149 NALIHFYFEGFDVSEYAKRVFEEEVDEVCSDVVTWNSMLAGLVRKGEVRDAEKMFDEMPK 208

Query: 81  KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
           +DVVSW++M+ GY QNG  ++  E F  M  K       +L              +  + 
Sbjct: 209 RDVVSWSSMIMGYVQNGKLEDGLECFRLMREKGIRPNESILVT------------MLSAS 256

Query: 141 SDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNT-MISGYAQDGDMSQAKNLF 199
           +   L+ W    G FV   +        + +  R  V+  T ++  YA+ G + ++++LF
Sbjct: 257 AQLGLLGW----GRFVHSTI--------ESLRFRISVAIGTGLVDMYAKCGCIEESRDLF 304

Query: 200 DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYV----QSNKMD 255
           D    +D++TWT M+ G   +    EA   F +  ++     N +  G +    ++  + 
Sbjct: 305 DGMMERDIWTWTVMICGLASHDRAKEALVLFREFIREGFRPVNVIFVGVLNACSRAGLVS 364

Query: 256 MARELFEAMP-----SRNVSSWNTMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAI--- 306
             R  F+ M      S  +  +  M+  + + G I +A +L + M  + D V WA +   
Sbjct: 365 EGRYYFKLMVDGYGISPEMEHYGCMVDLFARAGLIDEAVRLIETMTVEPDPVMWATLLDA 424

Query: 307 --ISGYAQTG 314
             I G+ + G
Sbjct: 425 CEIHGFVEMG 434



 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 40/216 (18%)

Query: 334 NRSTFSCALSTCA---DIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK-------- 382
           N+ TF+  L  C    D   +  G Q+H  VVK GY    FV NAL+  YF+        
Sbjct: 106 NQHTFTFLLHACTKGKDCFNIVSGVQVHDHVVKLGYTGNVFVRNALIHFYFEGFDVSEYA 165

Query: 383 -----------C----------------GSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
                      C                G + +A  +F+ + ++DVVSW++MI GY ++G
Sbjct: 166 KRVFEEEVDEVCSDVVTWNSMLAGLVRKGEVRDAEKMFDEMPKRDVVSWSSMIMGYVQNG 225

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHY 475
             +  L  F  M+  G++P+E  +V +LSA +  GL+  G  + +S  +      S    
Sbjct: 226 KLEDGLECFRLMREKGIRPNESILVTMLSASAQLGLLGWG-RFVHSTIESLRFRISVAIG 284

Query: 476 TCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
           T ++D+  + G +EE++DL   M  E    +W  ++
Sbjct: 285 TGLVDMYAKCGCIEESRDLFDGM-MERDIWTWTVMI 319



 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 123/303 (40%), Gaps = 59/303 (19%)

Query: 22  VSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK 81
           V++N+M++G +R      A  +FD+MP+RD+VSW+ M+ GYV+N +L D    F  M +K
Sbjct: 181 VTWNSMLAGLVRKGEVRDAEKMFDEMPKRDVVSWSSMIMGYVQNGKLEDGLECFRLMREK 240

Query: 82  DVVSWNA----MLSGYAQNGYADEAREVFYQMP----HKNAISWNGLLAAYVHNGRIEEA 133
            +    +    MLS  AQ G     R V   +       +     GL+  Y   G IEE+
Sbjct: 241 GIRPNESILVTMLSASAQLGLLGWGRFVHSTIESLRFRISVAIGTGLVDMYAKCGCIEES 300

Query: 134 CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMS 193
             LFD                                M  RD+ +W  MI G A      
Sbjct: 301 RDLFDG-------------------------------MMERDIWTWTVMICGLASHDRAK 329

Query: 194 QAKNLFDQ------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YN 242
           +A  LF +       P   +F    +++   + G++ E R +F  M     IS     Y 
Sbjct: 330 EALVLFREFIREGFRPVNVIF--VGVLNACSRAGLVSEGRYYFKLMVDGYGISPEMEHYG 387

Query: 243 AMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTM-----ITGYGQNGDIAQARKLFDMMP 296
            MV  + ++  +D A  L E M    +   W T+     I G+ + G+     KL  M P
Sbjct: 388 CMVDLFARAGLIDEAVRLIETMTVEPDPVMWATLLDACEIHGFVEMGE-KIGNKLIKMDP 446

Query: 297 QRD 299
             D
Sbjct: 447 THD 449



 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 105/260 (40%), Gaps = 55/260 (21%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNAR-------FSLARD----------- 42
           +R G    A ++F+ MP+R  VS+++MI GY++N +       F L R+           
Sbjct: 191 VRKGEVRDAEKMFDEMPKRDVVSWSSMIMGYVQNGKLEDGLECFRLMREKGIRPNESILV 250

Query: 43  -LFDKMPQRDLVSWNVMLTGYVRNRR--------------------LGDARRLFDSMPQK 81
            +     Q  L+ W   +   + + R                    + ++R LFD M ++
Sbjct: 251 TMLSASAQLGLLGWGRFVHSTIESLRFRISVAIGTGLVDMYAKCGCIEESRDLFDGMMER 310

Query: 82  DVVSWNAMLSGYAQNGYADEAREVFYQMPHKN----AISWNGLLAAYVHNGRIEEACRLF 137
           D+ +W  M+ G A +  A EA  +F +   +      + + G+L A    G + E    F
Sbjct: 311 DIWTWTVMICGLASHDRAKEALVLFREFIREGFRPVNVIFVGVLNACSRAGLVSEGRYYF 370

Query: 138 DSKSDW-----ELISWNCLMGGFVKRKMLGAARKLFDKMHVR-DVVSWNTM-----ISGY 186
               D      E+  + C++  F +  ++  A +L + M V  D V W T+     I G+
Sbjct: 371 KLMVDGYGISPEMEHYGCMVDLFARAGLIDEAVRLIETMTVEPDPVMWATLLDACEIHGF 430

Query: 187 AQDGDMSQAKNLFDQSPHQD 206
            + G+      L    P  D
Sbjct: 431 VEMGE-KIGNKLIKMDPTHD 449


>Medtr2g013500.1 | PPR containing plant-like protein | HC |
           chr2:3639056-3640975 | 20130731
          Length = 515

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 225/427 (52%), Gaps = 9/427 (2%)

Query: 166 KLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE 225
           +L    H+ D    NT++  Y    D+  A  +F   P  DV +WT+++SG  + G   E
Sbjct: 83  RLIKSGHIFDGFIKNTLLYFYLSSNDVVSATRVFKSIPSPDVVSWTSLISGLSKCGFETE 142

Query: 226 ARTFFDQMPQK-NEISYNAMVA-----GYVQSNKMDMARELFEAMPSRNVSSWNTMITGY 279
           A   F  +  K N ++  + ++     G ++  K   A  L   M   N+  +N  +  Y
Sbjct: 143 AIEAFSSINVKPNALTLVSAISACSSIGAIKFGKAIHAYGLKSLMIDGNIVFYNAALDLY 202

Query: 280 GQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES-LNRSTF 338
            + G  + AR +F  M +RD +SW  ++  YA+ G   EA+ +F ++   GE+  N ST 
Sbjct: 203 AKCGFFSNARNVFVKMSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTV 262

Query: 339 SCALSTCADIAALELGKQIHGQVVK-TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
              LS CA I +L LG  +H  + K    +    +GNAL+ MY KCG +     VF  + 
Sbjct: 263 VTVLSACASIGSLSLGCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVV 322

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            KDV+SW T+I G A +G+GKQ + +F  M   GV PD++T +G+LSACSH GL+  G  
Sbjct: 323 HKDVISWGTVICGLAMNGYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMM 382

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIH 517
           +F +M   Y + P   HY CM+D+ GRA   EEA   ++ MP E     W ALL A + H
Sbjct: 383 FFKAMRDSYGIVPQMSHYGCMVDMYGRASLFEEAVAFLKGMPVEAEGPIWSALLQACKTH 442

Query: 518 GNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSW 577
           GN E+ E     +        G   LLSN+YA+S RW DA N+R  MR  G++KV G SW
Sbjct: 443 GNEEMSEWIRGQIHDKNV-GVGTLALLSNIYASSERWDDANNVRKIMRGTGLKKVAGLSW 501

Query: 578 VEVQNKI 584
           VE + ++
Sbjct: 502 VEPEVRL 508



 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 157/337 (46%), Gaps = 31/337 (9%)

Query: 15  TMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRL 74
           T   ++  SY+A   G   +AR   +  +FD   +      N +L  Y+ +  +  A R+
Sbjct: 62  THALKACCSYHAHAKGLEIHARLIKSGHIFDGFIK------NTLLYFYLSSNDVVSATRV 115

Query: 75  FDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK-NAISWNGLLAAYVHNGRIE-- 131
           F S+P  DVVSW +++SG ++ G+  EA E F  +  K NA++    ++A    G I+  
Sbjct: 116 FKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAISACSSIGAIKFG 175

Query: 132 EACRLFDSKS---DWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQ 188
           +A   +  KS   D  ++ +N  +  + K      AR +F KM  RDV+SW T++  YA+
Sbjct: 176 KAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYAR 235

Query: 189 DGDMSQAKNLFDQ-------SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISY 241
            G   +A  +F Q        P++   T   ++S     G L       D + ++ ++  
Sbjct: 236 GGQCGEAVEVFKQMIVSGEAEPNES--TVVTVLSACASIGSLSLGCWVHDYIEKRIDLDV 293

Query: 242 -----NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMP 296
                NA+V  YV+   M M  ++F  +  ++V SW T+I G   NG   Q  ++F  M 
Sbjct: 294 DGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNGYGKQVVQMFSHML 353

Query: 297 QR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
                 D V++  ++S  +  G   E + MF +  RD
Sbjct: 354 VHGVLPDDVTFIGLLSACSHVGLVSEGM-MFFKAMRD 389



 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 320 LNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGM 379
            N+  ++     S N  TF+ AL  C    A   G +IH +++K+G+    F+ N LL  
Sbjct: 43  FNLCNQMLSCSSSHNHYTFTHALKACCSYHAHAKGLEIHARLIKSGHIFDGFIKNTLLYF 102

Query: 380 YFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM 439
           Y     +  A  VF+ I   DVVSW ++I+G ++ GF  +A+   E+  +I VKP+ +T+
Sbjct: 103 YLSSNDVVSATRVFKSIPSPDVVSWTSLISGLSKCGFETEAI---EAFSSINVKPNALTL 159

Query: 440 VGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMP 499
           V  +SACS  G I  G        K   +  +   Y   +DL  + G    A+++   M 
Sbjct: 160 VSAISACSSIGAIKFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMS 219

Query: 500 FEPPAASWGALLGASRIHGNT-ELGEKAAEMVF--KMEPHNSGMYVLLS 545
            +    SW  LL A    G   E  E   +M+   + EP+ S +  +LS
Sbjct: 220 -KRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLS 267



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 132/318 (41%), Gaps = 64/318 (20%)

Query: 8   SALRVFNTMPRRSSVSYNAMISGYLR---------------------------NARFSLA 40
           SA RVF ++P    VS+ ++ISG  +                           +A  S+ 
Sbjct: 111 SATRVFKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSINVKPNALTLVSAISACSSIG 170

Query: 41  RDLFDK----------MPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAML 90
              F K          M   ++V +N  L  Y +     +AR +F  M ++DV+SW  +L
Sbjct: 171 AIKFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLL 230

Query: 91  SGYAQNGYADEAREVFYQM-------PHKNAISWNGLLAAYVHNGRIEEACRLFD---SK 140
             YA+ G   EA EVF QM       P+++ +    +L+A    G +   C + D    +
Sbjct: 231 MAYARGGQCGEAVEVFKQMIVSGEAEPNESTVV--TVLSACASIGSLSLGCWVHDYIEKR 288

Query: 141 SDWELIS--WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNL 198
            D ++     N L+  +VK   +    K+F+ +  +DV+SW T+I G A +G   Q   +
Sbjct: 289 IDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLAMNGYGKQVVQM 348

Query: 199 FDQSPHQDVF----TWTAMVSGYVQNGMLDEARTFFDQM-------PQKNEISYNAMVAG 247
           F       V     T+  ++S     G++ E   FF  M       PQ +   Y  MV  
Sbjct: 349 FSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQMSH--YGCMVDM 406

Query: 248 YVQSNKMDMARELFEAMP 265
           Y +++  + A    + MP
Sbjct: 407 YGRASLFEEAVAFLKGMP 424


>Medtr4g078750.1 | PPR containing plant-like protein | HC |
           chr4:30434764-30433246 | 20130731
          Length = 470

 Score =  273 bits (698), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 213/348 (61%), Gaps = 10/348 (2%)

Query: 242 NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCV 301
             ++  Y ++N +  A+++FE +P   + + N MI  +  NG++  A  +F+ MP RD V
Sbjct: 123 TTLLVVYARTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMPYRDVV 182

Query: 302 SWAAIISGYAQTGHYEEALNMFIEIKRDGESL------NRSTFSCALSTCADI---AALE 352
           SW  +++G+A +G++  A+  F  + R  + L      N +T+   LS+C ++    AL+
Sbjct: 183 SWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTELEGKGALD 242

Query: 353 LGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYA 412
            G+Q+HG +V  G + G FVG +L+ +Y K G +  +  VF  +  ++V +WN MI+  A
Sbjct: 243 FGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWNAMISSLA 302

Query: 413 RHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSS 472
            +G  K+AL +FE MK  G+KP+ IT V VL+AC+  G +  G E F SM+  + V P  
Sbjct: 303 SNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSKFQVVPVM 362

Query: 473 KHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFK 532
           +HY C++DLLGRAG ++EA +++RNMPF P     GA LGA RIHG  ELGE+ A+M+ K
Sbjct: 363 EHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELGEEIAKML-K 421

Query: 533 MEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEV 580
           ++  + G Y+LLS++YA   RW  A ++R+ + + G+ K+  +S V +
Sbjct: 422 LQTQHCGQYLLLSSMYAEKERWNHAADLRNEIMEAGIHKIPAFSMVHL 469



 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 28/269 (10%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW 210
           L+  + +   +  A+K+F+++ +  +V+ N MI+ +  +G+M  A  +F+  P++DV +W
Sbjct: 125 LLVVYARTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMPYRDVVSW 184

Query: 211 TAMVSGYVQNGMLDEARTFF----------DQMPQKNEISYNAMVAGYVQ---SNKMDMA 257
           T MV+G+  +G    A  FF          D + + NE +Y ++++   +      +D  
Sbjct: 185 TTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTELEGKGALDFG 244

Query: 258 RELFEAMPSRNVS----SWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQT 313
           R++   +  + V        ++I  YG+ G +  +  +F +M  R+  +W A+IS  A  
Sbjct: 245 RQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWNAMISSLASN 304

Query: 314 GHYEEALNMFIEIKRDGESLNRSTFSCALSTCAD----IAALELGKQIHG--QVVKTGYE 367
           G  +EAL++F ++K  G   N  TF   L+ CA        LEL + +    QVV     
Sbjct: 305 GREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSKFQVVPVMEH 364

Query: 368 TGCFVGNALLGMYFKCGSIGEANDVFEGI 396
            GC V   LLG   + G I EA ++   +
Sbjct: 365 YGCVVD--LLG---RAGHIQEAAEIIRNM 388



 Score = 83.6 bits (205), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 142/342 (41%), Gaps = 28/342 (8%)

Query: 2   RNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTG 61
           R  H   A +VF  +P    V+ NAMI+ +  N     A  +F+ MP RD+VSW  M+ G
Sbjct: 131 RTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNG 190

Query: 62  YVRNRRLGDARRLFDSMPQ-KDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           +  +   G A R F +M + KDV+     L    +  Y         ++  K A+ +   
Sbjct: 191 FALSGNFGAAIRFFGTMMRHKDVLDC---LVKPNEATYVSVLSSC-TELEGKGALDFGRQ 246

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWN 180
           +  Y+                D  +     L+  + K   L  +  +F  M VR+V +WN
Sbjct: 247 VHGYI-----------VVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWN 295

Query: 181 TMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
            MIS  A +G   +A +LF++   Q +     T+ A+++   + G + E    F+ M  K
Sbjct: 296 AMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSK 355

Query: 237 NEI-----SYNAMVAGYVQSNKMDMARELFEAMP-SRNVSSWNTMITGYGQNGDIAQARK 290
            ++      Y  +V    ++  +  A E+   MP   + +     +     +G I    +
Sbjct: 356 FQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELGEE 415

Query: 291 LFDMMP--QRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           +  M+    + C  +  + S YA+   +  A ++  EI   G
Sbjct: 416 IAKMLKLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIMEAG 457



 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 52/329 (15%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D      +L  Y R   +  A+++F+ +P   +V+ NAM++ +  NG  + A  VF  MP
Sbjct: 118 DPFVLTTLLVVYARTNHIVCAQKVFEEVPMFCIVASNAMINAFTMNGNMEGALLVFEWMP 177

Query: 111 HKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLM----GGFVK--------- 157
           +++ +SW  ++  +  +G    A R F +    + +  +CL+      +V          
Sbjct: 178 YRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDV-LDCLVKPNEATYVSVLSSCTELE 236

Query: 158 -RKMLGAARKLFDKMHVR----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTA 212
            +  L   R++   + V+     V    ++I+ Y + G ++ + ++F     ++V TW A
Sbjct: 237 GKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLNYSASVFRVMVVREVCTWNA 296

Query: 213 MVSGYVQNGMLDEARTFFDQMP----QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN 268
           M+S    NG   EA   F++M     + N I++ A++    +   +    ELFE+M S+ 
Sbjct: 297 MISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMSSK- 355

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
                                  F ++P  +   +  ++    + GH +EA  +   I+ 
Sbjct: 356 -----------------------FQVVPVME--HYGCVVDLLGRAGHIQEAAEI---IRN 387

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQI 357
                +++     L  C    A+ELG++I
Sbjct: 388 MPFPPDKTVLGAFLGACRIHGAIELGEEI 416


>Medtr1g083890.1 | PPR containing plant-like protein | HC |
           chr1:37365601-37367754 | 20130731
          Length = 490

 Score =  270 bits (691), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 239/431 (55%), Gaps = 20/431 (4%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFD--QSPHQ---DVFTWTAMV--SG 216
           A  +F+  H  +++ +N++I  ++      Q+ + F+  +  H    D FT+  ++  + 
Sbjct: 60  ATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATS 119

Query: 217 YVQNGMLDE-------ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV 269
           Y+++  L +       A  F+   P   EI    ++  Y    KM+ A ++F+ M  R V
Sbjct: 120 YLRDYDLGQCLHAHVTALGFYRHSPV--EI---GLLEVYSNCGKMEDANKVFDEMLHREV 174

Query: 270 SSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRD 329
             WN MI G+ + GD+    KLF  M QR  VSW  +IS  AQ     EA  +F E+   
Sbjct: 175 VVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQ 234

Query: 330 GESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCF-VGNALLGMYFKCGSIGE 388
           G   + +T    L  CA +  ++ G+ IH      G       VGN+L+  Y KCG++  
Sbjct: 235 GFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEA 294

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A  VF  + +K+VVSWN MI+G   +G G+  + +FE M   GV P + T VGVL+ C+H
Sbjct: 295 AWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAH 354

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           AG +D+G E F SM   + ++P  +HY C++DLLGR G ++EA DL+RNMP  P AA WG
Sbjct: 355 AGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWG 414

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           ALL A R HG+ E+ E AA+ + ++EP NSG YVLLSN+YA   +W +   +R  M+ VG
Sbjct: 415 ALLSACRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVG 474

Query: 569 VQKVTGYSWVE 579
           ++K  G S ++
Sbjct: 475 IKKNPGQSALQ 485



 Score = 93.2 bits (230), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 170/385 (44%), Gaps = 48/385 (12%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-----DLVSWNVML--TG 61
           A  +FN     + + +N++I  +     F  +   F+ M        D  ++  +L  T 
Sbjct: 60  ATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATS 119

Query: 62  YVRNRRLGD-------ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
           Y+R+  LG        A   +   P +       +L  Y+  G  ++A +VF +M H+  
Sbjct: 120 YLRDYDLGQCLHAHVTALGFYRHSPVEI-----GLLEVYSNCGKMEDANKVFDEMLHREV 174

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           + WN ++  +   G +E   +LF       ++SWN ++    +RK  G A  +F +M  +
Sbjct: 175 VVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQ 234

Query: 175 ----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVF-----TWTAMVSGYVQNGMLDE 225
               D  +  T++   A+ GD+   + +   +  + +         ++V  Y + G L+ 
Sbjct: 235 GFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEA 294

Query: 226 ARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGY----GQ 281
           A   F++M +KN +S+NAM++G   + K ++  ELFE M  + V+  ++   G       
Sbjct: 295 AWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAH 354

Query: 282 NGDIAQARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNMFIEIKRDGESLNRS 336
            G + + R++FD M  +  +S     +  ++    + GH +EA ++   I+      N +
Sbjct: 355 AGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDL---IRNMPLMPNAA 411

Query: 337 TFSCALSTC--------ADIAALEL 353
            +   LS C        A+IAA EL
Sbjct: 412 LWGALLSACRTHGDREVAEIAAKEL 436



 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 115/273 (42%), Gaps = 60/273 (21%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G  + A +VF+ M  R  V +N MI+G+ +     +   LF +M QR +VSWN+M++   
Sbjct: 157 GKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLA 216

Query: 64  RNRRLGDARRLFDSMPQK----------------------DVVSW--------------- 86
           + ++ G+A  +F  M ++                      D   W               
Sbjct: 217 QRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVI 276

Query: 87  ---NAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFD----- 138
              N+++  Y + G  + A +VF +M  KN +SWN +++    NG+ E    LF+     
Sbjct: 277 SVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARK 336

Query: 139 ----SKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVS-----WNTMISGYAQD 189
               S S +  +   C   GFV +      R++FD M V+  +S     +  ++    + 
Sbjct: 337 GVTPSDSTFVGVLACCAHAGFVDK-----GREIFDSMTVKFKLSPKLEHYGCVVDLLGRC 391

Query: 190 GDMSQAKNLFDQSP-HQDVFTWTAMVSGYVQNG 221
           G + +A +L    P   +   W A++S    +G
Sbjct: 392 GHVKEAYDLIRNMPLMPNAALWGALLSACRTHG 424


>Medtr5g024100.1 | PPR containing plant-like protein | HC |
           chr5:9654442-9656866 | 20130731
          Length = 754

 Score =  270 bits (690), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 169/600 (28%), Positives = 301/600 (50%), Gaps = 39/600 (6%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKM-------PQRDLVSWNVMLTG 61
           ALRVF  +  R  V++N MISG+ +N  F + + LF +M       P R +   +++   
Sbjct: 163 ALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDR-ITFASLLKCC 221

Query: 62  YVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLL 121
            V N  +     ++    + DVV  +AM+  YA+       R++F  M  K+   W+ ++
Sbjct: 222 SVLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMI 281

Query: 122 AAYVHNGRIEEACRLFDS------KSDWELISWNCLMGGFVKRKMLGAARKLFDKM---- 171
           + Y  N R EEA   F        K D  ++S    +   V+ + L    ++   M    
Sbjct: 282 SGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSST--LKACVEIEDLNTGVQVHGLMIKNG 339

Query: 172 HVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNG--------ML 223
           H  D    + +++ YA  G++   + LF +   +D+  W +M+    + G        + 
Sbjct: 340 HQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQARPGQGCGRCMQLF 399

Query: 224 DEAR-TFFDQMPQKNEISYNAMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITG 278
            E R T F Q+     +   A++    + + +   R++     ++   R+    N ++  
Sbjct: 400 QELRRTTFLQIQGATLV---AVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHM 456

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y +   I  A K F  + ++D  SW++II    Q     +AL +  E+  +G +    + 
Sbjct: 457 YSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSL 516

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEE 398
              +S C+ +  +  GKQ+H   +K+GY    ++G++++ MY KCG+I E+  VF+   +
Sbjct: 517 PLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVFDEQLK 576

Query: 399 KDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEY 458
            + V++N +I+GYA HG  +QA+ V   ++  GV P+ +T + ++SACSHAG ++  +  
Sbjct: 577 PNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSACSHAGYVEETSHL 636

Query: 459 FYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
           F  M   Y + P S+HY+C++D  GRAGRLEEA  +++    +   ++W  LL A R H 
Sbjct: 637 FTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQK---DGSESAWRTLLSACRNHS 693

Query: 519 NTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWV 578
           N ++GEK+A  + ++ P +   Y+LLSN+Y   G W +A N R +M  + V+K  G SW+
Sbjct: 694 NRKIGEKSAMKMIELNPSDHAPYILLSNIYIEEGNWEEALNCRKKMAKIRVKKDPGNSWL 753



 Score =  161 bits (407), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/573 (22%), Positives = 254/573 (44%), Gaps = 71/573 (12%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSM------ 78
           N ++S Y +++ F  A  LFDKMP R++V+W  +++ +++   +  A  +F+ M      
Sbjct: 46  NTLLSFYSKSSNFHYAHKLFDKMPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDER 105

Query: 79  PQKDVVS-----------WNAMLS--------GYAQNGYA------------DEARE--- 104
           P ++  +           W+  L         G  +  +A            D+ R+   
Sbjct: 106 PNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALR 165

Query: 105 VFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAA 164
           VFY +  ++ ++WN +++ +  NG      RLF     WE          F    +L   
Sbjct: 166 VFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEM--WEEQGLKPDRITFA--SLLKCC 221

Query: 165 RKLFDKMHVR----------DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMV 214
             L + M +           DVV  + M+  YA+  D+S  + +FD    +D F W++M+
Sbjct: 222 SVLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMI 281

Query: 215 SGYVQNGMLDEARTFFDQMPQK----NEISYNAMVAGYVQSNKMDMARELFEAM----PS 266
           SGY  N   +EA  FF  M ++    ++   ++ +   V+   ++   ++   M      
Sbjct: 282 SGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQ 341

Query: 267 RNVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGH-YEEALNMFIE 325
            +    + ++  Y   G++    KLF  +  +D V+W ++I   A+ G      + +F E
Sbjct: 342 NDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQARPGQGCGRCMQLFQE 401

Query: 326 IKRDG-ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCG 384
           ++R     +  +T    L +C   + L  G+QIH  +VK+       VGNAL+ MY +C 
Sbjct: 402 LRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECK 461

Query: 385 SIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLS 444
            I +A   F  I  KD  SW+++I    ++    +AL + + M   G+     ++   +S
Sbjct: 462 QIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCIS 521

Query: 445 ACSHAGLIDRGTE-YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPP 503
           ACS    I  G + + +++   YS        + +ID+  + G +EE++ +  +   +P 
Sbjct: 522 ACSQLLTISEGKQLHVFAIKSGYSCDVYIG--SSIIDMYAKCGNIEESEKVF-DEQLKPN 578

Query: 504 AASWGALLGASRIHGNTELGEKAAEMVFKMEPH 536
             ++ A++     HG     ++A E++ K+E +
Sbjct: 579 EVTFNAIISGYAHHGK---AQQAIEVLSKLEKN 608



 Score = 86.3 bits (212), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 88/446 (19%), Positives = 178/446 (39%), Gaps = 103/446 (23%)

Query: 8   SALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP------------------- 48
           S  ++F++M ++ +  +++MISGY  N R   A + F  M                    
Sbjct: 261 SCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACV 320

Query: 49  --------------------QRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNA 88
                               Q D    +V+L  Y     LGD  +LF  +  KD+V+WN+
Sbjct: 321 EIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNS 380

Query: 89  MLSGYAQNG---------YADEAREVFYQ------------------MPH---------- 111
           M+   A+ G         + +  R  F Q                  +P           
Sbjct: 381 MILAQARPGQGCGRCMQLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVK 440

Query: 112 ----KNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKL 167
               ++ +  N L+  Y    +I++A + F      +  SW+ ++G   + +M   A +L
Sbjct: 441 SSLCRHTLVGNALVHMYSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALEL 500

Query: 168 FDKMHVRDV----VSWNTMISGYAQDGDMSQAKNL----FDQSPHQDVFTWTAMVSGYVQ 219
             +M    +     S    IS  +Q   +S+ K L           DV+  ++++  Y +
Sbjct: 501 CKEMLDEGINFTSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAK 560

Query: 220 NGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVS----SWNTM 275
            G ++E+   FD+  + NE+++NA+++GY    K   A E+   +    V+    ++  +
Sbjct: 561 CGNIEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLAL 620

Query: 276 ITGYGQNGDIAQARKLFDMMPQRDCVS-----WAAIISGYAQTGHYEEALNMFIEIKRDG 330
           ++     G + +   LF +M  +  +      ++ ++  Y + G  EEA  +   +++DG
Sbjct: 621 MSACSHAGYVEETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQI---VQKDG 677

Query: 331 ESLNRSTFSCALSTCADIAALELGKQ 356
              + S +   LS C + +  ++G++
Sbjct: 678 ---SESAWRTLLSACRNHSNRKIGEK 700



 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%)

Query: 338 FSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
           F  +L+  ++   L    QIH Q++ T Y +   + N LL  Y K  +   A+ +F+ + 
Sbjct: 10  FLLSLAKKSNPIILTQCNQIHAQLIITQYISQTHLANTLLSFYSKSSNFHYAHKLFDKMP 69

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
            ++VV+W T+I+ + ++G   +A  +F  M+    +P+E T   +L AC++  L   G +
Sbjct: 70  NRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQ 129


>Medtr3g006800.1 | pentatricopeptide (PPR) repeat protein | HC |
           chr3:874317-871628 | 20130731
          Length = 505

 Score =  269 bits (688), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 237/439 (53%), Gaps = 44/439 (10%)

Query: 201 QSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMAREL 260
           QS   +V   T ++  Y + G++  AR  FD+MPQ+N  S+N M+A Y  ++    A  +
Sbjct: 29  QSLLPNVILETDLLLAYTKLGLISHARKLFDKMPQRNMHSWNIMIASYTHNSMYFDALTV 88

Query: 261 FEAM-------------PSRNVS--------SW------------------NTMITGYGQ 281
           FEA              P   +S         W                  N+++  Y +
Sbjct: 89  FEAFKRCGVLPDCYTLPPLFKISIRIDECCLGWMCHGLVVKLGYEEIVVVNNSVLEFYVK 148

Query: 282 NGDIAQARKLF-DMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEI--KRDGESLNRSTF 338
            G ++QA  +F +    RD  +W  +ISG+ + G Y EA++ F E+   R+G  L+  T 
Sbjct: 149 CGTMSQALSVFSNHNAPRDSATWNLMISGFGKAGLYSEAVHCFREMLKYRNGIELDHMTL 208

Query: 339 SCALSTCADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIE 397
              LS C     L   K++HG +V+  G++    +GNAL+  Y KCGS+ ++ ++F+ + 
Sbjct: 209 PSILSACGKEGDLLKVKEVHGFIVRNFGFDADAPIGNALIDNYGKCGSLKDSENIFKTVC 268

Query: 398 EKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTE 457
             ++V+W TMI+ Y  HG G++++++FE M   G +P+ +T+  +L++CSH GL+D+G +
Sbjct: 269 YVNLVTWTTMISCYGMHGKGQESVVLFEKMMDEGFRPNAVTLTAILASCSHCGLLDQGKK 328

Query: 458 YFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAAS-WGALLGASRI 516
            F SM  DY + P+++HY CM+DL  R GRLEEA  L+  M       S WGALL    +
Sbjct: 329 IFGSMISDYGLEPTAEHYACMVDLFSRCGRLEEALQLLERMKSSSVTGSMWGALLAGCVM 388

Query: 517 HGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYS 576
           H N ++GE AA  +F++EP+N+  YV L  +Y + G       +R +MRD+G+ K  G S
Sbjct: 389 HQNVKIGEVAAHHLFQLEPNNTSNYVALWGIYQSRGMVLGVSTIRGKMRDLGLVKTPGCS 448

Query: 577 WVEVQNKIHKFTVGDCFHP 595
           W+ +  + HKF  GD  HP
Sbjct: 449 WINIAGRAHKFYQGDLSHP 467



 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 168/373 (45%), Gaps = 40/373 (10%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS- 116
           +L  Y +   +  AR+LFD MPQ+++ SWN M++ Y  N    +A  VF        +  
Sbjct: 41  LLLAYTKLGLISHARKLFDKMPQRNMHSWNIMIASYTHNSMYFDALTVFEAFKRCGVLPD 100

Query: 117 WNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDV 176
              L   +  + RI+E C           + W C   G V +  LG         +   V
Sbjct: 101 CYTLPPLFKISIRIDECC-----------LGWMC--HGLVVK--LG---------YEEIV 136

Query: 177 VSWNTMISGYAQDGDMSQAKNLF-DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQ 235
           V  N+++  Y + G MSQA ++F + +  +D  TW  M+SG+ + G+  EA   F +M +
Sbjct: 137 VVNNSVLEFYVKCGTMSQALSVFSNHNAPRDSATWNLMISGFGKAGLYSEAVHCFREMLK 196

Query: 236 -KNEISYNAMVAGYVQS---NKMDMAR-ELFEAMPSRN------VSSWNTMITGYGQNGD 284
            +N I  + M    + S    + D+ + +       RN          N +I  YG+ G 
Sbjct: 197 YRNGIELDHMTLPSILSACGKEGDLLKVKEVHGFIVRNFGFDADAPIGNALIDNYGKCGS 256

Query: 285 IAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALST 344
           +  +  +F  +   + V+W  +IS Y   G  +E++ +F ++  +G   N  T +  L++
Sbjct: 257 LKDSENIFKTVCYVNLVTWTTMISCYGMHGKGQESVVLFEKMMDEGFRPNAVTLTAILAS 316

Query: 345 CADIAALELGKQIHGQVVKT-GYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVS 403
           C+    L+ GK+I G ++   G E        ++ ++ +CG + EA  + E ++   V  
Sbjct: 317 CSHCGLLDQGKKIFGSMISDYGLEPTAEHYACMVDLFSRCGRLEEALQLLERMKSSSVTG 376

Query: 404 --WNTMIAGYARH 414
             W  ++AG   H
Sbjct: 377 SMWGALLAGCVMH 389



 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 32/238 (13%)

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
           ++R   S  L TC   + +    Q H Q +         +   LL  Y K G I  A  +
Sbjct: 1   MSRKLLSSLLRTCKTHSTVS---QCHAQTLLQSLLPNVILETDLLLAYTKLGLISHARKL 57

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITM-------VGVLSA 445
           F+ + ++++ SWN MIA Y  +     AL VFE+ K  GV PD  T+       + +   
Sbjct: 58  FDKMPQRNMHSWNIMIASYTHNSMYFDALTVFEAFKRCGVLPDCYTLPPLFKISIRIDEC 117

Query: 446 C----SHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFE 501
           C     H  ++  G E    +N              +++   + G + +A  +  N    
Sbjct: 118 CLGWMCHGLVVKLGYEEIVVVNNS------------VLEFYVKCGTMSQALSVFSNHNAP 165

Query: 502 PPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGM---YVLLSNLYAASGRWAD 556
             +A+W  ++      G   L  +A     +M  + +G+   ++ L ++ +A G+  D
Sbjct: 166 RDSATWNLMISG---FGKAGLYSEAVHCFREMLKYRNGIELDHMTLPSILSACGKEGD 220



 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 89/193 (46%), Gaps = 16/193 (8%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHK--- 112
           N ++  Y +   L D+  +F ++   ++V+W  M+S Y  +G   E+  +F +M  +   
Sbjct: 245 NALIDNYGKCGSLKDSENIFKTVCYVNLVTWTTMISCYGMHGKGQESVVLFEKMMDEGFR 304

Query: 113 -NAISWNGLLAAYVHNGRIEEACRLFDSK-SDWELIS----WNCLMGGFVKRKMLGAARK 166
            NA++   +LA+  H G +++  ++F S  SD+ L      + C++  F +   L  A +
Sbjct: 305 PNAVTLTAILASCSHCGLLDQGKKIFGSMISDYGLEPTAEHYACMVDLFSRCGRLEEALQ 364

Query: 167 LFDKMHVRDVVS--WNTMISGYAQDGDMS----QAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           L ++M    V    W  +++G     ++      A +LF   P+ +   + A+   Y   
Sbjct: 365 LLERMKSSSVTGSMWGALLAGCVMHQNVKIGEVAAHHLFQLEPN-NTSNYVALWGIYQSR 423

Query: 221 GMLDEARTFFDQM 233
           GM+    T   +M
Sbjct: 424 GMVLGVSTIRGKM 436


>Medtr7g108530.1 | PPR containing plant-like protein | HC |
           chr7:44212645-44210679 | 20130731
          Length = 467

 Score =  268 bits (684), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 152/412 (36%), Positives = 232/412 (56%), Gaps = 21/412 (5%)

Query: 193 SQAKNLFDQS--------PHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAM 244
           SQ+ NL +          P   VF + +++  +  + + +   + +  M  KN I  N  
Sbjct: 52  SQSHNLLNYVSPLFTHLIPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHM-HKNSILPNNF 110

Query: 245 VAGYV---QSNKMDMAR------ELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM 295
              ++    S+  D  +       + +     ++   N+++  Y   G +   R+LFD M
Sbjct: 111 TFPFLFKSLSDSHDFVQSQCVYTHVIKLGYVNDIYVNNSLLDVYASYGCLELCRQLFDEM 170

Query: 296 PQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGK 355
           PQRD VSW  +I GY   G Y +AL +F +++  G   NR T   ALS CA   A+E+G 
Sbjct: 171 PQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGV 230

Query: 356 QIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHG 415
            I   V + G+E    +G AL+ MY KCG + E   VF  ++EK+V + N +I G A   
Sbjct: 231 WIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLALAK 290

Query: 416 FGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKD--YSVTPSSK 473
             ++AL+ F  M+  GV+ DE+T+V VLSACSH+GL+++G  + +SM  D  Y   P+ K
Sbjct: 291 SVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKG-RFIFSMLVDGKYGFLPNVK 349

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKM 533
           HY CM+DLL RAG+L+EA D+++ MPFEP AA WG+LL  S+   + E  E AA  + ++
Sbjct: 350 HYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLLLGSKSRDDLEFSEFAATKLVEL 409

Query: 534 EPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIH 585
           EP+N+  YV LSNLYA +GRW+D   +R  M++ G+ K  G S VEV+++ H
Sbjct: 410 EPYNTAYYVQLSNLYAEAGRWSDVERIRGMMKERGLTKDLGCSSVEVEHQRH 461



 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 146/345 (42%), Gaps = 36/345 (10%)

Query: 78  MPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLF 137
           +P+  V  +N+++  ++ +   +    ++  M HKN+I  N     +           LF
Sbjct: 69  IPKPHVFIFNSLIRAFSHSHIPNTPLSLYSHM-HKNSILPNNFTFPF-----------LF 116

Query: 138 DSKSD-WELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAK 196
            S SD  + +   C+    +K   LG         +V D+   N+++  YA  G +   +
Sbjct: 117 KSLSDSHDFVQSQCVYTHVIK---LG---------YVNDIYVNNSLLDVYASYGCLELCR 164

Query: 197 NLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDM 256
            LFD+ P +DV +WT M+ GY   G  ++A   F+QM     +     +   + +     
Sbjct: 165 QLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSC 224

Query: 257 AREL---FEAMPSRN-----VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIIS 308
           A E+    + M  RN     V     +I  Y + G + +  K+F  M +++  +   +I 
Sbjct: 225 AIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIK 284

Query: 309 GYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVV--KTGY 366
           G A     EEAL  F  ++ DG   +  T    LS C+    +E G+ I   +V  K G+
Sbjct: 285 GLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLVEKGRFIFSMLVDGKYGF 344

Query: 367 ETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMIAG 410
                    ++ +  + G + EA D+ + +  E     W +++ G
Sbjct: 345 LPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLLLG 389



 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%)

Query: 51  DLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP 110
           D+   N +L  Y     L   R+LFD MPQ+DVVSW  M+ GY   G  ++A  VF QM 
Sbjct: 143 DIYVNNSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQ 202

Query: 111 H----KNAISWNGLLAAYVHNGRIEEACRLFD--SKSDWEL--ISWNCLMGGFVKRKMLG 162
           +     N ++    L+A   +  IE    + D   ++ WEL  I    L+  +VK   + 
Sbjct: 203 YGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVE 262

Query: 163 AARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQ----SPHQDVFTWTAMVSGYV 218
              K+F  M  ++V + N +I G A    + +A   F++        D  T   ++S   
Sbjct: 263 EGLKVFCDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACS 322

Query: 219 QNGMLDEARTFFDQMPQ------KNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSS- 271
            +G++++ R  F  +         N   Y  MV    ++ ++  A ++ + MP    ++ 
Sbjct: 323 HSGLVEKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAM 382

Query: 272 WNTMITGYGQNGDIA----QARKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
           W +++ G     D+      A KL ++ P  +   +  + + YA+ G + + 
Sbjct: 383 WGSLLLGSKSRDDLEFSEFAATKLVELEPY-NTAYYVQLSNLYAEAGRWSDV 433



 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 124/297 (41%), Gaps = 24/297 (8%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           N+++  Y       L R LFD+MPQRD+VSW VM+ GY    +  DA  +F+ M    VV
Sbjct: 148 NSLLDVYASYGCLELCRQLFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVV 207

Query: 85  SWNAMLSGYAQNGYADEAREV---FYQMPHKN-----AISWNGLLAAYVHNGRIEEACRL 136
                +        +  A E+      M  +N      I    L+  YV  GR+EE  ++
Sbjct: 208 PNRVTMVNALSACASSCAIEMGVWIDDMVRRNGWELDVILGTALIDMYVKCGRVEEGLKV 267

Query: 137 FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV----RDVVSWNTMISGYAQDGDM 192
           F    +  + + N ++ G    K +  A   F++M +     D V+  T++S  +  G +
Sbjct: 268 FCDMKEKNVFTLNVVIKGLALAKSVEEALLWFNRMELDGVRADEVTLVTVLSACSHSGLV 327

Query: 193 SQAKNLFDQSPH------QDVFTWTAMVSGYVQNGMLDEARTFFDQMP-QKNEISYNAMV 245
            + + +F            +V  +  MV    + G L EA      MP +     + +++
Sbjct: 328 EKGRFIFSMLVDGKYGFLPNVKHYACMVDLLARAGQLQEAFDIIKCMPFEPTAAMWGSLL 387

Query: 246 AGYVQSNKMDM----ARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
            G    + ++     A +L E  P  N + +  +   Y + G  +   ++  MM +R
Sbjct: 388 LGSKSRDDLEFSEFAATKLVELEP-YNTAYYVQLSNLYAEAGRWSDVERIRGMMKER 443


>Medtr3g005330.1 | PPR containing plant-like protein | HC |
           chr3:156847-154639 | 20130731
          Length = 479

 Score =  267 bits (683), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/402 (37%), Positives = 234/402 (58%), Gaps = 18/402 (4%)

Query: 187 AQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDE-ARTFFDQMP---QKNEISYN 242
           A   +M+ A N+FD+ P  D F W  M+ G+  +      A  FF +M    + +  +++
Sbjct: 55  AVSQNMNYALNVFDKIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFS 114

Query: 243 AMVAGYVQSNKMDMAREL----FEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR 298
            ++    +   +++ ++L    F+     +    N++I  YG   DI  A +LF+ M Q 
Sbjct: 115 FILKIIARLRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQP 174

Query: 299 DCVSWAAIISGYAQTGHYEEALNMF---IEIKRDGESL--NRSTFSCALSTCADIAALEL 353
           + VSW +II  +   G Y EA+++F   ++ + +G  L  + +T    LS C  I +L+ 
Sbjct: 175 NLVSWNSIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDF 234

Query: 354 GKQIHGQVVKTGYET---GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG 410
           G+++H   V+ G  +      V NAL+ MY KCG++ EA + F  ++ K+VVSWN MI G
Sbjct: 235 GRKVHS-FVRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILG 293

Query: 411 YARHGFGKQALMVFESMKTIGV-KPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVT 469
           +A HG G++AL +F  M    V +PDEIT + VL ACSH GL+D G  YF  MN+DY++ 
Sbjct: 294 FASHGNGEEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIK 353

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
           P+ KHY CM+DLLGRAG   EA +L+++MP E  A  W  LL A R +GN ELGEK  + 
Sbjct: 354 PTIKHYGCMVDLLGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKH 413

Query: 530 VFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQK 571
           + ++EP +S  YVLL+N+YA++G+W +    R  M++  V+K
Sbjct: 414 LMELEPDHSSDYVLLANMYASTGQWNEMSKERRSMQERRVRK 455



 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 38/345 (11%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSL-ARDLFDKM-----PQRDLVSWNVMLTGY 62
           AL VF+ +P+  S  +N MI G+  +   S  A   F +M     P     S+ + +   
Sbjct: 63  ALNVFDKIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIAR 122

Query: 63  VRNRRLGDARR--LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
           +R   LG      LF    +      N+++  Y      + A ++F +M   N +SWN +
Sbjct: 123 LRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSI 182

Query: 121 LAAYVHNGRIEEACRLF-----DSKSDWELISWNCLMGGFVKRKMLGAARKL--FDKMH- 172
           +  +V+ G+  EA  LF        +  EL   +  +   V     GA   L    K+H 
Sbjct: 183 IDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATL--VVTLSACGAIGSLDFGRKVHS 240

Query: 173 -VRDVVS--------WNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGML 223
            VRD V+        +N ++  YA+ G + +A   F     ++V +W  M+ G+  +G  
Sbjct: 241 FVRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNG 300

Query: 224 DEARTFFDQMPQKN-----EISYNAMVAGYVQSNKMDMARELFEAMP-----SRNVSSWN 273
           +EA   F +M  +N     EI++  ++        +D  R  FE M         +  + 
Sbjct: 301 EEALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYG 360

Query: 274 TMITGYGQNGDIAQARKLFDMMP-QRDCVSWAAIISGYAQTGHYE 317
            M+   G+ G   +A +L   MP + + + W  +++     G+ E
Sbjct: 361 CMVDLLGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVE 405



 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 141/379 (37%), Gaps = 101/379 (26%)

Query: 40  ARDLFDKMPQRDLVSWNVMLTGYVRN-----------RRLGDARR--------------- 73
           A ++FDK+P+ D   WN M+ G+  +           +R+  A R               
Sbjct: 63  ALNVFDKIPKPDSFLWNTMIRGFGNSTTHSHNAIHFFKRMQLAHRPDNFTFSFILKIIAR 122

Query: 74  -------------LFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGL 120
                        LF    +      N+++  Y      + A ++F +M   N +SWN +
Sbjct: 123 LRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLKDIEIAHQLFEEMYQPNLVSWNSI 182

Query: 121 LAAYVHNGRIEEACRLFDS----------------------------------------- 139
           +  +V+ G+  EA  LF                                           
Sbjct: 183 IDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHSFV 242

Query: 140 ----KSDWELIS-WNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQ 194
                S  E IS +N L+  + K   +  A + F  M  ++VVSWN MI G+A  G+  +
Sbjct: 243 RDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRKNVVSWNVMILGFASHGNGEE 302

Query: 195 AKNLFDQSPHQDV-----FTWTAMVSGYVQNGMLDEARTFFDQMPQKNEIS-----YNAM 244
           A  LF +  H++V      T+  ++      G++DE R +F+ M +   I      Y  M
Sbjct: 303 ALALFTRMLHENVERPDEITFLCVLCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCM 362

Query: 245 VAGYVQSNKMDMARELFEAMPSR-NVSSWNTMITGYGQNGDIAQARK----LFDMMPQRD 299
           V    ++     A EL ++MP   N   W T++      G++    K    L ++ P   
Sbjct: 363 VDLLGRAGLFVEAYELIKSMPVECNAIIWRTLLAACRNYGNVELGEKVRKHLMELEPDHS 422

Query: 300 CVSWAAIISGYAQTGHYEE 318
              +  + + YA TG + E
Sbjct: 423 S-DYVLLANMYASTGQWNE 440



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 69/158 (43%), Gaps = 4/158 (2%)

Query: 355 KQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARH 414
           KQIH ++  TG+     +   ++       ++  A +VF+ I + D   WNTMI G+   
Sbjct: 29  KQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPDSFLWNTMIRGFGNS 88

Query: 415 -GFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSK 473
                 A+  F+ M+ +  +PD  T   +L   +    ++ G +   S+ K +     + 
Sbjct: 89  TTHSHNAIHFFKRMQ-LAHRPDNFTFSFILKIIARLRFVNLGKQLHCSLFK-FGFENHTY 146

Query: 474 HYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALL 511
               +I + G    +E A  L   M ++P   SW +++
Sbjct: 147 VRNSLIHMYGMLKDIEIAHQLFEEM-YQPNLVSWNSII 183


>Medtr5g038580.1 | PPR containing plant-like protein | HC |
           chr5:16954387-16952525 | 20130731
          Length = 620

 Score =  266 bits (680), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 174/552 (31%), Positives = 285/552 (51%), Gaps = 37/552 (6%)

Query: 58  MLTGYVRN-RRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQM----PHK 112
           ++  Y  N R    A  LFD MPQ  + ++NA+LSG ++NG   +A  +F Q+       
Sbjct: 76  LIASYAANTRSFHYALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFRQIGFWNIRP 135

Query: 113 NAISWNGLLAA--YVHNGRIEE----ACRLFDSKSDWELISWNCLMGGFVKRKMLGAARK 166
           N+++   LL+A    +   +++    AC+L     ++++     L+  + K  +L ++ K
Sbjct: 136 NSVTIVSLLSARDVKNQSHVQQVHCLACKL---GVEYDVYVSTSLVTAYSKCGVLVSSNK 192

Query: 167 LFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF-------DQSPHQDVFTWTAMVSGYVQ 219
           +F+ + V++VV++N  +SG  Q+G      ++F       ++ P++            + 
Sbjct: 193 VFENLRVKNVVTYNAFMSGLLQNGFHRVVFDVFKDMTMNLEEKPNKVTLVSVVSACATLS 252

Query: 220 NGMLDEARTFFDQMPQKNEISYNAMVAG-----YVQSNKMDMARELFEAMPSRNVSSWNT 274
           N  L +       +  K E   + MV       Y +      A ++F     RN+ +WN+
Sbjct: 253 NIRLGKQ---VHGLSMKLEACDHVMVVTSLVDMYSKCGCWGSAFDVFSRSEKRNLITWNS 309

Query: 275 MITGYGQNGDIAQARKLFDMMPQR----DCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
           MI G   N +  +A +LF+ M       D  +W ++ISG+AQ G   EA   F +++  G
Sbjct: 310 MIAGMMMNSESERAVELFERMVDEGILPDSATWNSLISGFAQKGVCVEAFKYFSKMQCAG 369

Query: 331 ESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEAN 390
            +      +  LS C D   L   K IHG  ++   +   F+  AL+  Y KCG +  A 
Sbjct: 370 VAPCLKILTSLLSVCGDSCVLRSAKAIHGYALRICVDKDDFLATALVDTYMKCGCVSFAR 429

Query: 391 DVFEGIEEK--DVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
            VF+  + K  D   WN MI GY  +G  + A  VF  M    V+P+  T V VLSACSH
Sbjct: 430 FVFDQFDVKPDDPAFWNAMIGGYGTNGDYESAFEVFYEMLDEMVQPNSATFVSVLSACSH 489

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
           +G I+RG  +F  M + Y + P  +H+ C++DLLGRAG+L EA+DL++ +  EPPA+ + 
Sbjct: 490 SGQIERGLRFF-RMIRKYGLDPKPEHFGCVVDLLGRAGQLGEARDLVQELA-EPPASVFD 547

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           +LLGA R + ++ LGE+ A  +  +EP N    V+LSN+YAA GRW++   +R  + D G
Sbjct: 548 SLLGACRCYLDSNLGEEMAMKLIDIEPKNPAPLVVLSNIYAALGRWSEVERIRGLITDKG 607

Query: 569 VQKVTGYSWVEV 580
           + K +G S +EV
Sbjct: 608 LDKNSGISMIEV 619



 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 220/506 (43%), Gaps = 81/506 (16%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDK----------------MPQRDL 52
           AL +F+ MP+ +  ++NA++SG  RN     A  LF +                +  RD+
Sbjct: 90  ALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFRQIGFWNIRPNSVTIVSLLSARDV 149

Query: 53  -----------------VSWNV-----MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAML 90
                            V ++V     ++T Y +   L  + ++F+++  K+VV++NA +
Sbjct: 150 KNQSHVQQVHCLACKLGVEYDVYVSTSLVTAYSKCGVLVSSNKVFENLRVKNVVTYNAFM 209

Query: 91  SGYAQNGYADEAREVFYQM-------PHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDW 143
           SG  QNG+     +VF  M       P+K  +       A + N R+ +       K + 
Sbjct: 210 SGLLQNGFHRVVFDVFKDMTMNLEEKPNKVTLVSVVSACATLSNIRLGKQVHGLSMKLEA 269

Query: 144 --ELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLF-- 199
              ++    L+  + K    G+A  +F +   R++++WN+MI+G   + +  +A  LF  
Sbjct: 270 CDHVMVVTSLVDMYSKCGCWGSAFDVFSRSEKRNLITWNSMIAGMMMNSESERAVELFER 329

Query: 200 --DQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQM------PQKNEISYNAMVAG---Y 248
             D+    D  TW +++SG+ Q G+  EA  +F +M      P    ++    V G    
Sbjct: 330 MVDEGILPDSATWNSLISGFAQKGVCVEAFKYFSKMQCAGVAPCLKILTSLLSVCGDSCV 389

Query: 249 VQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMMPQR--DCVSWAAI 306
           ++S K      L   +   +  +   ++  Y + G ++ AR +FD    +  D   W A+
Sbjct: 390 LRSAKAIHGYALRICVDKDDFLA-TALVDTYMKCGCVSFARFVFDQFDVKPDDPAFWNAM 448

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
           I GY   G YE A  +F E+  +    N +TF   LS C+    +E G +    + K G 
Sbjct: 449 IGGYGTNGDYESAFEVFYEMLDEMVQPNSATFVSVLSACSHSGQIERGLRFFRMIRKYGL 508

Query: 367 ET-----GCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAG---YARHGFGK 418
           +      GC V   LLG   + G +GEA D+ + + E     +++++     Y     G+
Sbjct: 509 DPKPEHFGCVVD--LLG---RAGQLGEARDLVQELAEPPASVFDSLLGACRCYLDSNLGE 563

Query: 419 QALMVFESMKTIGVKPDEITMVGVLS 444
           +      +MK I ++P     + VLS
Sbjct: 564 EM-----AMKLIDIEPKNPAPLVVLS 584



 Score = 79.7 bits (195), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 39/327 (11%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK--- 81
            +++  Y +   +  A D+F +  +R+L++WN M+ G + N     A  LF+ M  +   
Sbjct: 277 TSLVDMYSKCGCWGSAFDVFSRSEKRNLITWNSMIAGMMMNSESERAVELFERMVDEGIL 336

Query: 82  -DVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSK 140
            D  +WN+++SG+AQ G   EA + F +M          +L + +      ++C L  +K
Sbjct: 337 PDSATWNSLISGFAQKGVCVEAFKYFSKMQCAGVAPCLKILTSLL--SVCGDSCVLRSAK 394

Query: 141 S----------DWELISWNCLMGGFVKRKMLGAARKLFDKMHVR--DVVSWNTMISGYAQ 188
           +          D +      L+  ++K   +  AR +FD+  V+  D   WN MI GY  
Sbjct: 395 AIHGYALRICVDKDDFLATALVDTYMKCGCVSFARFVFDQFDVKPDDPAFWNAMIGGYGT 454

Query: 189 DGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLDEARTFF--------DQMPQK 236
           +GD   A  +F    D+    +  T+ +++S    +G ++    FF        D  P+ 
Sbjct: 455 NGDYESAFEVFYEMLDEMVQPNSATFVSVLSACSHSGQIERGLRFFRMIRKYGLDPKPEH 514

Query: 237 NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG----YGQNGDIAQARKLF 292
               +  +V    ++ ++  AR+L + +     S +++++         N     A KL 
Sbjct: 515 ----FGCVVDLLGRAGQLGEARDLVQELAEPPASVFDSLLGACRCYLDSNLGEEMAMKLI 570

Query: 293 DMMPQRDCVSWAAIISGYAQTGHYEEA 319
           D+ P ++      + + YA  G + E 
Sbjct: 571 DIEP-KNPAPLVVLSNIYAALGRWSEV 596



 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 128/292 (43%), Gaps = 35/292 (11%)

Query: 307 ISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGY 366
           ++     G Y+EALN++  +     + N  TF   L  C+++++    + +H  + KTG+
Sbjct: 7   VTKLVANGLYKEALNLYSHLHSSSPTPNTFTFPILLKACSNLSSPSQTQILHAHLFKTGF 66

Query: 367 ETGCFVGNALLGMY-FKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
            +      AL+  Y     S   A ++F+ + +  + ++N +++G +R+G   QA+ +F 
Sbjct: 67  HSHPHTSTALIASYAANTRSFHYALELFDEMPQPTITAFNAVLSGLSRNGPRGQAVWLFR 126

Query: 426 SMKTIGVKPDEITMVGVLSACS----------HAGLIDRGTEY----FYSMNKDYS---- 467
            +    ++P+ +T+V +LSA            H      G EY      S+   YS    
Sbjct: 127 QIGFWNIRPNSVTIVSLLSARDVKNQSHVQQVHCLACKLGVEYDVYVSTSLVTAYSKCGV 186

Query: 468 VTPSSK-----------HYTCMIDLLGRAG----RLEEAQDLMRNMPFEPPAASWGALLG 512
           +  S+K            Y   +  L + G      +  +D+  N+  +P   +  +++ 
Sbjct: 187 LVSSNKVFENLRVKNVVTYNAFMSGLLQNGFHRVVFDVFKDMTMNLEEKPNKVTLVSVVS 246

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGMYVL-LSNLYAASGRWADAGNMRSR 563
           A     N  LG++   +  K+E  +  M V  L ++Y+  G W  A ++ SR
Sbjct: 247 ACATLSNIRLGKQVHGLSMKLEACDHVMVVTSLVDMYSKCGCWGSAFDVFSR 298


>Medtr3g080230.1 | PPR containing plant-like protein | HC |
           chr3:36292375-36290915 | 20130731
          Length = 486

 Score =  266 bits (680), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 41/431 (9%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISY---- 241
           GD+S A N+FDQ P    F +  ++  +  +     +  FF++M +     +E S+    
Sbjct: 55  GDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLL 114

Query: 242 -----------------------------NAMVAGYVQSNKMDMARELFEAMP----SRN 268
                                        NA++  Y        AR++FE         +
Sbjct: 115 KSRSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVD 174

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
           + SW+ ++  + + G++  ARK+FD MP+RD VSW  ++S Y++     E L++F E++ 
Sbjct: 175 IVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRL 234

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
            G   +  T    +S CA++   E+G+ +H  V + G+     + N+L+ MY KCG + E
Sbjct: 235 AGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEE 294

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A  VF+  + K +++WN M+   A HG+ + A  +FE M   GV PD +T++ +L A +H
Sbjct: 295 AWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAH 354

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
            G +D G   F SM +DY V P  +HY  ++D+LGR+GRL+EA +L+ +MP       WG
Sbjct: 355 KGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWG 414

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           ALLGA RIHG+  +GE+  + + +++P   G Y+LL ++Y A+GR A+A  MR  M   G
Sbjct: 415 ALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASG 474

Query: 569 VQKVTGYSWVE 579
            +K  G SWVE
Sbjct: 475 ARKNPGCSWVE 485



 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 182/418 (43%), Gaps = 35/418 (8%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A  +F+ MP+ ++  YN +I  +  +   S +   F++M +  +       T  +
Sbjct: 55  GDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLL 114

Query: 64  RNRRLGDAR------RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KN 113
           ++R             +F     + +   NA++  YA  G    AR+VF          +
Sbjct: 115 KSRSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVD 174

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
            +SW+GLL A+   G ++ A ++FD   + +++SW  ++  + K K       LF +M +
Sbjct: 175 IVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRL 234

Query: 174 R----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW-----TAMVSGYVQNGMLD 224
                D V+  ++IS  A+ GD ++   +  +   ++ F W      +++  Y + G L+
Sbjct: 235 AGVWPDEVTVLSVISACAELGD-AEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLE 293

Query: 225 EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV----SSWNTMITGYG 280
           EA   FD+  +K+ I++NAM+         + A  LFE M    V     +   ++  Y 
Sbjct: 294 EAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYA 353

Query: 281 QNGDIAQARKLFDMMPQRD------CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
             G + +  +LF+ M QRD         + A++    ++G  +EA N+   +       N
Sbjct: 354 HKGFVDEGIRLFESM-QRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPS---N 409

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
              +   L  C     + +G+++  ++++   + G +    L  +Y   G   EAN++
Sbjct: 410 DVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYY-ILLRDIYVAAGRTAEANEM 466


>Medtr3g080230.2 | PPR containing plant-like protein | HC |
           chr3:36292375-36290915 | 20130731
          Length = 486

 Score =  266 bits (680), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 229/431 (53%), Gaps = 41/431 (9%)

Query: 190 GDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK----NEISY---- 241
           GD+S A N+FDQ P    F +  ++  +  +     +  FF++M +     +E S+    
Sbjct: 55  GDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLL 114

Query: 242 -----------------------------NAMVAGYVQSNKMDMARELFEAMP----SRN 268
                                        NA++  Y        AR++FE         +
Sbjct: 115 KSRSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVD 174

Query: 269 VSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKR 328
           + SW+ ++  + + G++  ARK+FD MP+RD VSW  ++S Y++     E L++F E++ 
Sbjct: 175 IVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRL 234

Query: 329 DGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGE 388
            G   +  T    +S CA++   E+G+ +H  V + G+     + N+L+ MY KCG + E
Sbjct: 235 AGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEE 294

Query: 389 ANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSH 448
           A  VF+  + K +++WN M+   A HG+ + A  +FE M   GV PD +T++ +L A +H
Sbjct: 295 AWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAH 354

Query: 449 AGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWG 508
            G +D G   F SM +DY V P  +HY  ++D+LGR+GRL+EA +L+ +MP       WG
Sbjct: 355 KGFVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWG 414

Query: 509 ALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVG 568
           ALLGA RIHG+  +GE+  + + +++P   G Y+LL ++Y A+GR A+A  MR  M   G
Sbjct: 415 ALLGACRIHGDVGMGERVIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASG 474

Query: 569 VQKVTGYSWVE 579
            +K  G SWVE
Sbjct: 475 ARKNPGCSWVE 485



 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 182/418 (43%), Gaps = 35/418 (8%)

Query: 4   GHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYV 63
           G    A  +F+ MP+ ++  YN +I  +  +   S +   F++M +  +       T  +
Sbjct: 55  GDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLL 114

Query: 64  RNRRLGDAR------RLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KN 113
           ++R             +F     + +   NA++  YA  G    AR+VF          +
Sbjct: 115 KSRSFTMPLVHDIHGAVFKFGFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVD 174

Query: 114 AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHV 173
            +SW+GLL A+   G ++ A ++FD   + +++SW  ++  + K K       LF +M +
Sbjct: 175 IVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRL 234

Query: 174 R----DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTW-----TAMVSGYVQNGMLD 224
                D V+  ++IS  A+ GD ++   +  +   ++ F W      +++  Y + G L+
Sbjct: 235 AGVWPDEVTVLSVISACAELGD-AEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLE 293

Query: 225 EARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNV----SSWNTMITGYG 280
           EA   FD+  +K+ I++NAM+         + A  LFE M    V     +   ++  Y 
Sbjct: 294 EAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYA 353

Query: 281 QNGDIAQARKLFDMMPQRD------CVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
             G + +  +LF+ M QRD         + A++    ++G  +EA N+   +       N
Sbjct: 354 HKGFVDEGIRLFESM-QRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPS---N 409

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
              +   L  C     + +G+++  ++++   + G +    L  +Y   G   EAN++
Sbjct: 410 DVIWGALLGACRIHGDVGMGERVIKKLLELKPDEGGYY-ILLRDIYVAAGRTAEANEM 466


>Medtr5g012660.1 | PPR containing plant-like protein | HC |
           chr5:3861054-3862731 | 20130731
          Length = 519

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 241/472 (51%), Gaps = 41/472 (8%)

Query: 151 LMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQ----D 206
           L+  +VK  +   A  LF ++   +VVSWNT+ISGY   G   +A +LF +        D
Sbjct: 47  LIKFYVKMHLFTHAHNLFVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICAD 106

Query: 207 VFTWTA-----------------------------------MVSGYVQNGMLDEARTFFD 231
            F++T+                                   ++  Y + G ++ A   F 
Sbjct: 107 AFSFTSAMVACAQLSLLKLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFS 166

Query: 232 QMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKL 291
            +  K+ IS+N+++A    +  + +  +  + MP+ +V S+N +I G  Q G I  A ++
Sbjct: 167 DIADKDVISWNSVIAACANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDAVRI 226

Query: 292 FDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAAL 351
              MP  +  SW ++I+G+       EAL MF ++      ++  TFS  L+  A ++AL
Sbjct: 227 LSTMPCPNSSSWNSVITGFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASLSAL 286

Query: 352 ELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGY 411
             G  IH   +K G ++   VG++L+ MY KCG + +A  +F  +  +++VSWN MI GY
Sbjct: 287 TWGMLIHCCTIKYGLDSSIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMIYGY 346

Query: 412 ARHGFGKQALMVFESMKT-IGVKPDEITMVGVLSACSHAGL-IDRGTEYFYSMNKDYSVT 469
           AR+G   QA+ +FE +K     KPD IT + V+SACSH+ +  + G +YF +M  +Y + 
Sbjct: 347 ARNGDSAQAISLFELLKMERDTKPDGITFLNVISACSHSQIPFEMGIQYFDAMINEYGIA 406

Query: 470 PSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEM 529
           PS KH   MI L+G+ G L  AQ ++  + FE     W +LL A     +  + E AA  
Sbjct: 407 PSIKHCCSMIRLMGQKGELSRAQKMIHELGFESCGVVWRSLLAACGTQEDLHVAEIAAAK 466

Query: 530 VFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           V  +E     +YV+LSN+YA+ GRW D   +RS M    V+K  G SW+EV 
Sbjct: 467 VIGLERDEDYVYVMLSNMYASFGRWEDVNVIRSLMSKKRVRKEAGSSWIEVN 518



 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 50/324 (15%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQK--- 81
             +I  Y++   F+ A +LF ++PQ ++VSWN +++GYV   +   A  LF  + +    
Sbjct: 45  TTLIKFYVKMHLFTHAHNLFVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQIC 104

Query: 82  -DVVSWNAMLSGYAQ-----NGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACR 135
            D  S+ + +   AQ      G +  ++ V   M + N +  N L+  Y   G +E A R
Sbjct: 105 ADAFSFTSAMVACAQLSLLKLGSSIHSKTVKLGMDN-NTVVANCLIDMYGKCGSVERAVR 163

Query: 136 LFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQA 195
           +F   +D ++ISWN ++        +G   K    M   DVVS+N +I+G AQ G +  A
Sbjct: 164 IFSDIADKDVISWNSVIAACANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDA 223

Query: 196 KNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKN----EISYNAMVAG---- 247
             +    P  +  +W ++++G+V    + EA   F +M  KN    E +++ ++ G    
Sbjct: 224 VRILSTMPCPNSSSWNSVITGFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASL 283

Query: 248 ----------------------YVQSNKMDM---------ARELFEAMPSRNVSSWNTMI 276
                                  V S+ +DM         A  +F  + +RN+ SWN MI
Sbjct: 284 SALTWGMLIHCCTIKYGLDSSIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMI 343

Query: 277 TGYGQNGDIAQARKLFDMMP-QRD 299
            GY +NGD AQA  LF+++  +RD
Sbjct: 344 YGYARNGDSAQAISLFELLKMERD 367



 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 184/414 (44%), Gaps = 93/414 (22%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDL---------------- 52
           A  +F  +P+ + VS+N +ISGY+   +F  A  LF K+ +  +                
Sbjct: 60  AHNLFVEIPQPNVVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACAQ 119

Query: 53  -----------------------VSWNVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAM 89
                                  V  N ++  Y +   +  A R+F  +  KDV+SWN++
Sbjct: 120 LSLLKLGSSIHSKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFSDIADKDVISWNSV 179

Query: 90  LSGYAQNGYADEAREVFYQMPHKNAISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWN 149
           ++  A NG      +    MP+ + +S+NGL+      G+IE+A R+  +       SWN
Sbjct: 180 IAACANNGNIGLGFKFLQLMPNPDVVSYNGLINGIAQAGKIEDAVRILSTMPCPNSSSWN 239

Query: 150 CLMGGFVKRKMLGAARKLFDKMHVRDV-------------------VSW----------- 179
            ++ GFV R  +  A ++F KMH++++                   ++W           
Sbjct: 240 SVITGFVNRSRVPEALEMFGKMHLKNLQIDEFTFSIILNGIASLSALTWGMLIHCCTIKY 299

Query: 180 ---------NTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFF 230
                    +++I  Y++ G ++ A+++F+   ++++ +W AM+ GY +NG   +A + F
Sbjct: 300 GLDSSIVVGSSLIDMYSKCGQVNDAESIFNVLSNRNLVSWNAMIYGYARNGDSAQAISLF 359

Query: 231 DQMPQKNE-----ISYNAMVAGYVQSN-KMDMARELFEAMPSR-----NVSSWNTMITGY 279
           + +  + +     I++  +++    S    +M  + F+AM +      ++    +MI   
Sbjct: 360 ELLKMERDTKPDGITFLNVISACSHSQIPFEMGIQYFDAMINEYGIAPSIKHCCSMIRLM 419

Query: 280 GQNGDIAQARKLFDMMPQRDC-VSWAAIIS--GYAQTGHYEE-ALNMFIEIKRD 329
           GQ G++++A+K+   +    C V W ++++  G  +  H  E A    I ++RD
Sbjct: 420 GQKGELSRAQKMIHELGFESCGVVWRSLLAACGTQEDLHVAEIAAAKVIGLERD 473



 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 6/224 (2%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGY-ETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKD 400
           + T  D+   + G+QIH   +++GY     +V   L+  Y K      A+++F  I + +
Sbjct: 12  IRTATDLCFHKFGQQIHSYAIRSGYFHANIYVSTTLIKFYVKMHLFTHAHNLFVEIPQPN 71

Query: 401 VVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFY 460
           VVSWNT+I+GY   G  K+AL +F  ++   +  D  +    + AC+   L+  G+   +
Sbjct: 72  VVSWNTLISGYVHAGQFKKALSLFTKLERSQICADAFSFTSAMVACAQLSLLKLGSS-IH 130

Query: 461 SMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNT 520
           S      +  ++    C+ID+ G+ G +E A  +  ++  +    SW +++ A   +GN 
Sbjct: 131 SKTVKLGMDNNTVVANCLIDMYGKCGSVERAVRIFSDIA-DKDVISWNSVIAACANNGNI 189

Query: 521 ELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRM 564
            LG K  ++   M   +   Y  L N  A +G+  DA  + S M
Sbjct: 190 GLGFKFLQL---MPNPDVVSYNGLINGIAQAGKIEDAVRILSTM 230


>Medtr2g021850.1 | PPR containing plant-like protein | HC |
           chr2:7450705-7448544 | 20130731
          Length = 479

 Score =  265 bits (676), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 209/366 (57%), Gaps = 27/366 (7%)

Query: 342 LSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
           +  C    +LE  + +H   ++  +       N +L MYF+CGS+ +A DVF+ + E D+
Sbjct: 141 MRICGKAKSLEEARVVHRHALQHLHPLTVSTDNRVLEMYFECGSLDDAIDVFKSMPEYDL 200

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
            +W+TMI    ++GF + ++ +F   K +G+KPD    +GV  ACS  G I  G  +F S
Sbjct: 201 TTWHTMIMQLVKNGFAEDSIDIFTQFKNMGLKPDGQMFIGVFGACSMLGDISEGMLHFES 260

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
           M+KDY + P+  HY  +++++   G L+EA + +  MP EP    W  L+ + R+HGNTE
Sbjct: 261 MSKDYGIVPTMAHYVSLVEMIASIGHLDEALEFIEKMPMEPNVEVWKTLMNSCRVHGNTE 320

Query: 522 LGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQ 581
           LG+  A+         +G+ +               G     ++     K+T     + Q
Sbjct: 321 LGDVKAK---------AGLLL---------------GENSDLIKKNEQNKLTINP--KGQ 354

Query: 582 NKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSE 641
           +++H+F  GD   P+ D+IY  L  L  +M+ +GY++ T+  LHD++EE KE +L  HSE
Sbjct: 355 SRVHEFRNGDTSDPKSDKIYTLLRGLREQMKEDGYIAETRYALHDIDEEGKEDVLLAHSE 414

Query: 642 KLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGIC 701
           +LAVA G+ + PA   IRVIKN R+C DCH A+K ISKIVGR +I++ + R HHF  G+C
Sbjct: 415 RLAVAKGLFSSPARSTIRVIKNFRICPDCHTALKIISKIVGRELIIQ-AKRCHHFKNGLC 473

Query: 702 SCGDYW 707
           SC DY+
Sbjct: 474 SCKDYF 479


>Medtr6g034150.1 | PPR containing plant-like protein | HC |
           chr6:11544927-11542116 | 20130731
          Length = 451

 Score =  264 bits (675), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 226/404 (55%), Gaps = 38/404 (9%)

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           E  +N  +E+    +  + S F   L  C D+ +LELGK++H  + ++ +     + N L
Sbjct: 73  EGNVNQVLELLGQTDFADYSDFLSLLKLCEDLKSLELGKRVHEFLRRSKFGGNVELCNRL 132

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           +G+Y KCGS+ +A  VF+ + +++V S N MI GY  +G G   L+VF+ M   GV PDE
Sbjct: 133 IGLYVKCGSVKDARKVFDKMPDRNVGSLNLMICGYNVNGLGIDGLLVFKQMSQQGVVPDE 192

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
            T   VL+ C+    ++ G   F SM K+Y + P  +HY  ++++ G AGRL+EA + + 
Sbjct: 193 ETFALVLTVCALVDGVEEGLMQFESM-KEYGIVPGMEHYLGVVNIFGCAGRLDEAHEFIE 251

Query: 497 NMPFEPPAASWGAL------------LGASRIHG-NTELGEKAAEMVFKMEPHNSGMYVL 543
           NMP E     W  L            L AS ++  N E  + A E++  ++P  +     
Sbjct: 252 NMPIEAGVEIWETLRNFATICCAKNTLRASVLYRRNLEREDCADELLTVLDPSKAA---- 307

Query: 544 LSNLYAASGRWADAGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAF 603
                      AD   +  R      +K +  + +E +N++ ++    C  P K+     
Sbjct: 308 -----------ADKVPLPQR------KKQSAINMLEEKNRVSEYR---CNMPYKEESDVK 347

Query: 604 LEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKN 663
           L  L  +MR  GYV  T+ VLHD++EEEKE  L+YHSE LA+A+G+++ P    +R+IKN
Sbjct: 348 LRSLTGQMREAGYVPDTRYVLHDIDEEEKEKALQYHSECLAIAYGLISTPPRTTLRIIKN 407

Query: 664 LRVCEDCHNAIKHISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           LR+C DCHNAIK +SKIVGR +I+RD+ RFHHF +G CSCGDYW
Sbjct: 408 LRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW 451



 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 94/219 (42%), Gaps = 8/219 (3%)

Query: 194 QAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAGYVQSNK 253
           Q K    Q+PHQ         + ++Q G +++      Q    +   + +++        
Sbjct: 50  QPKLNHHQTPHQH---KNVNFAHFLQEGNVNQVLELLGQTDFADYSDFLSLLKLCEDLKS 106

Query: 254 MDMARELFEAMPSR----NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISG 309
           +++ + + E +       NV   N +I  Y + G +  ARK+FD MP R+  S   +I G
Sbjct: 107 LELGKRVHEFLRRSKFGGNVELCNRLIGLYVKCGSVKDARKVFDKMPDRNVGSLNLMICG 166

Query: 310 YAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETG 369
           Y   G   + L +F ++ + G   +  TF+  L+ CA +  +E G      + + G   G
Sbjct: 167 YNVNGLGIDGLLVFKQMSQQGVVPDEETFALVLTVCALVDGVEEGLMQFESMKEYGIVPG 226

Query: 370 CFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTM 407
                 ++ ++   G + EA++  E +  E  V  W T+
Sbjct: 227 MEHYLGVVNIFGCAGRLDEAHEFIENMPIEAGVEIWETL 265


>Medtr6g460480.1 | organelle transcript processing protein, putative
           | HC | chr6:20783537-20781756 | 20130731
          Length = 439

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 235/439 (53%), Gaps = 37/439 (8%)

Query: 306 IISGYAQTGH-YEEALNMFIEIKRD-GESLNRSTFSCALSTCADIAALELGKQIHGQVVK 363
           +I  ++ + H Y +++ +F  + RD G   NR +F  A   C +   +  G+Q+    VK
Sbjct: 1   MIKAHSMSNHSYRDSVAVFKLLTRDSGFFPNRYSFVFAFGACGNGLCVREGEQVFLHAVK 60

Query: 364 TGYETGCFVGNALLGMYFKCGSIG---------EANDVFEGIEEKDV----VSWNTMIAG 410
            G +   FV NAL+GM+ K G +          EA D+F  + + +V     +    I  
Sbjct: 61  VGLDCNVFVVNALIGMFGKWGDVEDARKVGCFMEALDLFHKMLQSEVKPNEYTMGNWIHV 120

Query: 411 YARHGFGKQALMVFESMKTIGVKPDEI--------------------TMVGVLSACSHAG 450
           Y R G  K    +  S+  +  K  EI                     M+G  +      
Sbjct: 121 YIRRGEIKMNDRLLASLIDMYAKCGEIESASSVFCEHKVKRKVWPWNAMIGGFAMHGKPE 180

Query: 451 LIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGAL 510
               G  YF  M  DY + P  +HY CM+DLL R+G L++A++++ +MP  P  A WGAL
Sbjct: 181 EAINGKSYFELMGSDYGINPEIEHYGCMVDLLSRSGLLKDAEEMILSMPMAPDVAIWGAL 240

Query: 511 LGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMR-DVGV 569
           L A RI+ + E   +   ++ +++P++ G  VLL N+Y+ S RW +A  +R +   +   
Sbjct: 241 LNACRIYKDMERRYRIGRIIKEIDPNHIGCNVLLGNIYSTSERWNEARMLREKNEINSDR 300

Query: 570 QKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDV-E 628
           +K+ G+S +E+    H+F VGD  HP+   IY+FL+E+  K++  GYV     VL D  +
Sbjct: 301 KKIPGFSSIELNGIFHQFLVGDRSHPKSKEIYSFLDEMISKLKIAGYVPELGEVLLDFDD 360

Query: 629 EEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKHISKIVGRLIILR 688
           EE+KE  L  HSEKLA+AFG++    G PI ++KNLRVC DCH+A K ISK+  R+II+R
Sbjct: 361 EEDKETALSVHSEKLAIAFGLMNTAPGTPICIVKNLRVCADCHHATKFISKVYDRVIIVR 420

Query: 689 DSHRFHHFNEGICSCGDYW 707
           D  R+HHF  G+CSC DYW
Sbjct: 421 DRMRYHHFKNGVCSCKDYW 439


>Medtr4g086270.1 | PPR containing plant-like protein | HC |
           chr4:33780755-33778471 | 20130731
          Length = 565

 Score =  263 bits (673), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 45/451 (9%)

Query: 265 PSR--NVSSWNTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAI------ISGYAQTGHY 316
           P+R  N + WN       QNG++ Q +   +     +    A        ++ + Q G  
Sbjct: 152 PNRGINQNQWNP------QNGNLNQFQNPNNQFQTPNVQEQAPPPPSIVDLTRFCQEGKV 205

Query: 317 EEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNAL 376
           +EAL    E+   G   + + F      C    ++E  K++H   +++ + +   + N +
Sbjct: 206 KEAL----ELMEKGIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDFKMHNKV 261

Query: 377 LGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDE 436
           + MY  C S+ +A  VF+ +  +++ SW+ MI GYA    G + L +FE M  +G++   
Sbjct: 262 IEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITS 321

Query: 437 ITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMR 496
            TM+ VLSAC  A  ++    Y  SM   Y + P  +HY  ++D+LG++G L+EA++ + 
Sbjct: 322 ETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEAEEFIE 381

Query: 497 NMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWAD 556
            +PFEP    +  L   +RIHG+ +L +   E++  ++P  +                  
Sbjct: 382 QLPFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKA------------------ 423

Query: 557 AGNMRSRMRDVGVQKVTGYSWVEVQNKIHKFTVGDCFHPEKDRIYAFLEELDLKMRREGY 616
              + +++     +K T  S ++ +N+I ++      + + +++ A        M+  GY
Sbjct: 424 ---VANKIPTPPPKKYTAISMLDGKNRIIEYK-NPTLYKDDEKLIAMN-----SMKDAGY 474

Query: 617 VSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVIKNLRVCEDCHNAIKH 676
           V  T+ VLHD+++E KE  L YHSE+LA+A+G+++ P   P+R+IKNLRVC DCHNAIK 
Sbjct: 475 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKI 534

Query: 677 ISKIVGRLIILRDSHRFHHFNEGICSCGDYW 707
           +S+IVGR +I+RD+ RFHHF +G CSCGDYW
Sbjct: 535 MSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 565



 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 13/205 (6%)

Query: 121 LAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFD----KMHVRDV 176
           L  +   G+++EA  L +     +   +  L     K K +  A+K+ D         D 
Sbjct: 196 LTRFCQEGKVKEALELMEKGIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDF 255

Query: 177 VSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQK 236
              N +I  Y     M+ A+ +FD  P++++ +W  M+ GY  + M DE    F+QM + 
Sbjct: 256 KMHNKVIEMYGNCKSMTDARRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNEL 315

Query: 237 N-EISYNAMVAGYVQSNKMDMARELF---EAMPSR-----NVSSWNTMITGYGQNGDIAQ 287
             EI+   M+A        +   + +   E+M S+      V  +  ++   GQ+G + +
Sbjct: 316 GLEITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKE 375

Query: 288 ARKLFDMMPQRDCVSWAAIISGYAQ 312
           A +  + +P    V+    +  YA+
Sbjct: 376 AEEFIEQLPFEPTVTVFETLKNYAR 400


>Medtr3g111500.1 | PPR containing plant-like protein | HC |
           chr3:52097450-52094882 | 20130731
          Length = 524

 Score =  263 bits (672), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 234/401 (58%), Gaps = 10/401 (2%)

Query: 164 ARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV----FTWTAMVSGYVQ 219
           A  LF  M   ++  +N++I+ Y  +    ++ ++F +  + ++     T+T +V   V 
Sbjct: 61  AETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVT 120

Query: 220 NGMLDEARTFFDQMPQKNEISY-NAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITG 278
              L++  T   +    +++ + ++++  + +   + +AR++F+   +RNV  W ++++G
Sbjct: 121 LSSLEQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSG 180

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y   G + + R +FD MPQR+  S +A++SGY +   + E + +F E+K+  +   R  F
Sbjct: 181 YCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKF 240

Query: 339 SCAL-----STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVF 393
           + AL     + C  + A E GK IH  V + G E    +G AL+  Y KCG + +A  VF
Sbjct: 241 NGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVF 300

Query: 394 EGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLID 453
           + +  KDV +W+ MI G A +G  K AL +FE M+ +G KP+E+T VGVL+AC+H  L  
Sbjct: 301 DKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFG 360

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
             +  F  M++ Y++TPS +HY C++D+L R+G++++A   + +M  EP  A WG+LL  
Sbjct: 361 ESSRLFGIMSEKYNITPSIEHYGCIVDILARSGQVKKALIFINSMHIEPDGAIWGSLLNG 420

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRW 554
             +HG+ ELG+K  + + + +P +SG YVLL+N+YA  G+W
Sbjct: 421 CLMHGHYELGQKVGKYLIEFDPEHSGRYVLLANMYANMGKW 461



 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 173/381 (45%), Gaps = 52/381 (13%)

Query: 71  ARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPH----KNAISWNGLLAAYVH 126
           A  LF  MP  ++  +N++++ Y  N   D++  VF +M +     N+ ++  L+ + V 
Sbjct: 61  AETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLVKSCVT 120

Query: 127 NGRIEEACRL-FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISG 185
              +E+   L   S +  ++   + ++  F K   +  AR++FD+   R+VV W +++SG
Sbjct: 121 LSSLEQVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSG 180

Query: 186 YAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNE----ISY 241
           Y   G +++ +++FD+ P ++  + +AMVSGYV+N    E    F ++ +K++    + +
Sbjct: 181 YCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKF 240

Query: 242 NAM--------------------VAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQ 281
           N                      +  YV+ N ++   EL  A           +I  Y +
Sbjct: 241 NGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTA-----------LIDFYAK 289

Query: 282 NGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCA 341
            G +  A K+FD M  +D  +W+A+I G A  G+ + AL +F ++++ G   N  TF   
Sbjct: 290 CGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFVGV 349

Query: 342 LSTCADIAALELGKQIHG------QVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEG 395
           L+ C   +      ++ G       +  +    GC V      +  + G + +A      
Sbjct: 350 LTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIV-----DILARSGQVKKALIFINS 404

Query: 396 IE-EKDVVSWNTMIAGYARHG 415
           +  E D   W +++ G   HG
Sbjct: 405 MHIEPDGAIWGSLLNGCLMHG 425



 Score =  103 bits (257), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 145/311 (46%), Gaps = 44/311 (14%)

Query: 25  NAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLTGYVRNRRLGDARRLFDSMPQKDVV 84
           +++I+ + ++    LAR +FD+   R++V W  +++GY     + + R +FD MPQ++  
Sbjct: 144 SSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEA 203

Query: 85  SWNAMLSGYAQNGYADEAREVFYQMPHKNA----ISWNGLLAAYVHN-----GRIEEA-- 133
           S +AM+SGY +N +  E  ++F ++  K+     + +NG L   V N     G  EE   
Sbjct: 204 SNSAMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKW 263

Query: 134 --CRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVRDVVSWNTMISGYAQDGD 191
               + ++  +++L     L+  + K   +  A K+FDKM V+DV +W+ MI G A +G+
Sbjct: 264 IHSYVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGN 323

Query: 192 MSQAKNLFDQ----SPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMPQKNEISYNAMVAG 247
              A  LF++     P  +  T+  +++      +  E+   F  M +K  I+       
Sbjct: 324 NKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNIT------- 376

Query: 248 YVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARKLFDMM-PQRDCVSWAAI 306
                            PS  +  +  ++    ++G + +A    + M  + D   W ++
Sbjct: 377 -----------------PS--IEHYGCIVDILARSGQVKKALIFINSMHIEPDGAIWGSL 417

Query: 307 ISGYAQTGHYE 317
           ++G    GHYE
Sbjct: 418 LNGCLMHGHYE 428



 Score = 87.0 bits (214), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 133/288 (46%), Gaps = 44/288 (15%)

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           GD   A  LF  MP  +   + +II+ Y     ++++L++F ++       N  TF+  +
Sbjct: 56  GDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLV 115

Query: 343 STCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFK-------------------- 382
            +C  +++LE   Q+    +K+G  +  +  ++++ ++ K                    
Sbjct: 116 KSCVTLSSLE---QVFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVV 172

Query: 383 -----------CGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKT-- 429
                      CG + E  DVF+ + +++  S + M++GY R+ F  + + +F  +K   
Sbjct: 173 CWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRELKKKD 232

Query: 430 ---IGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAG 486
                VK +   +V VL+AC+  G  + G ++ +S  ++  +    +  T +ID   + G
Sbjct: 233 KGRARVKFNGALLVSVLNACTVMGAFEEG-KWIHSYVEENGLEYDLELGTALIDFYAKCG 291

Query: 487 RLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTELGEKAAEMVFKME 534
            +++A+ +   M  +   A+W A++    I+GN ++   A E+  KME
Sbjct: 292 WVKDAEKVFDKMLVK-DVATWSAMILGLAINGNNKM---ALELFEKME 335


>Medtr2g026210.1 | PPR containing plant-like protein | HC |
           chr2:9478558-9480181 | 20130731
          Length = 467

 Score =  263 bits (671), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 125/327 (38%), Positives = 200/327 (61%)

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           ++  Y ++G +  A+ LF+ + ++D  +W A+I+GY Q G  E  L  F E+++     +
Sbjct: 95  LLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYVQKGLEEVGLETFYEMRQASLRPD 154

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
           + TF+     CA +A LE G+Q HG ++K        V +AL+ MYFKC  I +   +F+
Sbjct: 155 QYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVVVNSALIDMYFKCSCICDGRLLFD 214

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDR 454
               ++ ++W T+I+GY +HG   + L  F  M +   +P+ +T + VL ACSH GLID 
Sbjct: 215 KCLSRNTITWTTLISGYGKHGQVVEVLDSFHRMISESFRPNYVTFLAVLVACSHVGLIDE 274

Query: 455 GTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGAS 514
             +YF SM +DY + P +KHY  M+DLLGR+G+L+EA + +   P++  +  WGALLGA 
Sbjct: 275 AYKYFQSMIRDYEMVPHAKHYAAMVDLLGRSGKLKEAYEFVLKSPYKEHSVIWGALLGAC 334

Query: 515 RIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVTG 574
           +IHG+ +L + A++  F+ E  N+G YV+L+N YA+SG W D   +R+ +R+ GV K  G
Sbjct: 335 KIHGDLDLLKIASKKYFEFERVNTGKYVVLANAYASSGLWDDVEEVRASLRESGVTKEPG 394

Query: 575 YSWVEVQNKIHKFTVGDCFHPEKDRIY 601
           YS +EVQ ++  F  GD +H + D +Y
Sbjct: 395 YSRIEVQKEVSFFFNGDKYHRQADEVY 421



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 134/296 (45%), Gaps = 25/296 (8%)

Query: 58  MLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKN---- 113
           +L  Y ++  L  A+ LF+++ +KD  +WNAM++GY Q G  +   E FY+M   +    
Sbjct: 95  LLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYVQKGLEEVGLETFYEMRQASLRPD 154

Query: 114 -----AISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLF 168
                ++       A +  GR      L     D  +++ + L+  + K   +   R LF
Sbjct: 155 QYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVVVN-SALIDMYFKCSCICDGRLLF 213

Query: 169 DKMHVRDVVSWNTMISGYAQDGDMSQAKNLF----DQSPHQDVFTWTAMVSGYVQNGMLD 224
           DK   R+ ++W T+ISGY + G + +  + F     +S   +  T+ A++      G++D
Sbjct: 214 DKCLSRNTITWTTLISGYGKHGQVVEVLDSFHRMISESFRPNYVTFLAVLVACSHVGLID 273

Query: 225 EARTFFDQMPQKNEI-----SYNAMVAGYVQSNKMDMARELFEAMPSRNVSS-WNTMITG 278
           EA  +F  M +  E+      Y AMV    +S K+  A E     P +  S  W  ++  
Sbjct: 274 EAYKYFQSMIRDYEMVPHAKHYAAMVDLLGRSGKLKEAYEFVLKSPYKEHSVIWGALLGA 333

Query: 279 YGQNGDI----AQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDG 330
              +GD+      ++K F+   + +   +  + + YA +G +++   +   ++  G
Sbjct: 334 CKIHGDLDLLKIASKKYFE-FERVNTGKYVVLANAYASSGLWDDVEEVRASLRESG 388



 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 122/288 (42%), Gaps = 40/288 (13%)

Query: 306 IISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAALELGKQIHGQVVKTG 365
           ++ G   +G  E+A+ +   + R G  ++  T+S  L  C        G++IH  ++  G
Sbjct: 28  VLQGLCVSGKLEDAIRL---LYRTGFPVHPRTYSLMLQECIFWKNYGRGRRIHAHMIIVG 84

Query: 366 YETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDVVSWNTMIAGYARHGFGKQALMVFE 425
           Y    ++   LL +Y K G +  A  +F  + EKD  +WN MIAGY + G  +  L  F 
Sbjct: 85  YVPNEYLKIKLLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYVQKGLEEVGLETFY 144

Query: 426 SMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNK--------------------- 464
            M+   ++PD+ T   V  AC+   L++ G +    M K                     
Sbjct: 145 EMRQASLRPDQYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVVVNSALIDMYFKCS 204

Query: 465 ---------DYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNM---PFEPPAASWGALLG 512
                    D  ++ ++  +T +I   G+ G++ E  D    M    F P   ++ A+L 
Sbjct: 205 CICDGRLLFDKCLSRNTITWTTLISGYGKHGQVVEVLDSFHRMISESFRPNYVTFLAVLV 264

Query: 513 ASRIHGNTELGEKAAEMV---FKMEPHNSGMYVLLSNLYAASGRWADA 557
           A    G  +   K  + +   ++M PH +  Y  + +L   SG+  +A
Sbjct: 265 ACSHVGLIDEAYKYFQSMIRDYEMVPH-AKHYAAMVDLLGRSGKLKEA 311



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 140/320 (43%), Gaps = 17/320 (5%)

Query: 112 KNAISWNGLLAAYVHNGRIEEACRL-FDSKSDWELISWNCLMGGFVKRKMLGAARKLFDK 170
           KN  + + +L     +G++E+A RL + +       +++ ++   +  K  G  R++   
Sbjct: 20  KNTQNLDKVLQGLCVSGKLEDAIRLLYRTGFPVHPRTYSLMLQECIFWKNYGRGRRIHAH 79

Query: 171 MHVRDVVSWN----TMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEA 226
           M +   V        ++  YA+ G +  A+ LF+    +D F W AM++GYVQ G+ +  
Sbjct: 80  MIIVGYVPNEYLKIKLLILYAKSGCLETAQFLFNNLVEKDSFAWNAMIAGYVQKGLEEVG 139

Query: 227 RTFFDQMPQ----KNEISYNAMVAGYVQSNKMDMARE----LFEAMPSRNVSSWNTMITG 278
              F +M Q     ++ ++ ++         ++  R+    + +     NV   + +I  
Sbjct: 140 LETFYEMRQASLRPDQYTFASVFRACATLALLEPGRQAHGVMLKCQIGDNVVVNSALIDM 199

Query: 279 YGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTF 338
           Y +   I   R LFD    R+ ++W  +ISGY + G   E L+ F  +  +    N  TF
Sbjct: 200 YFKCSCICDGRLLFDKCLSRNTITWTTLISGYGKHGQVVEVLDSFHRMISESFRPNYVTF 259

Query: 339 SCALSTCADIAALELGKQIHGQVVKTGYETGCFVGN--ALLGMYFKCGSIGEAND-VFEG 395
              L  C+ +  ++   +    +++  YE      +  A++ +  + G + EA + V + 
Sbjct: 260 LAVLVACSHVGLIDEAYKYFQSMIRD-YEMVPHAKHYAAMVDLLGRSGKLKEAYEFVLKS 318

Query: 396 IEEKDVVSWNTMIAGYARHG 415
             ++  V W  ++     HG
Sbjct: 319 PYKEHSVIWGALLGACKIHG 338


>Medtr4g108660.1 | PPR containing plant-like protein | HC |
           chr4:44998985-45001066 | 20130731
          Length = 460

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/350 (38%), Positives = 198/350 (56%), Gaps = 6/350 (1%)

Query: 175 DVVSWNTMISGYAQDG-----DMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTF 229
           D  S+   + G A DG      +    + F       +F  T ++S Y + G  + AR  
Sbjct: 111 DSFSFAFTLKGIANDGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKV 170

Query: 230 FDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQAR 289
           FD+M Q N +++NA+V    +   ++ A  LFE MP RN++SWNTM+ GY + G +  AR
Sbjct: 171 FDEMSQPNVVAWNAVVTACFRCGDVEGAWGLFERMPVRNLTSWNTMLAGYVKAGQLWLAR 230

Query: 290 KLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
           ++F  M  RD  SW+ +I G+A++G + +A   F E+ RD    +  + +  LS CA   
Sbjct: 231 RVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAG 290

Query: 350 ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTMI 408
           A E GK +HG + K G+     V NAL+  Y KCG++  A  VF+ +  EK +VSW +MI
Sbjct: 291 AFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFQHMSAEKCIVSWTSMI 350

Query: 409 AGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYSMNKDYSV 468
           A  A HG   +A+ VF  M+  GV+PD +T + +L ACSH+GL+++G   F  M   Y +
Sbjct: 351 AALAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGI 410

Query: 469 TPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHG 518
            P+ +HY CM+DL GRA RL++A + +R MP  P    W  LLGA  IHG
Sbjct: 411 EPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHG 460



 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 184/428 (42%), Gaps = 52/428 (12%)

Query: 9   ALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQR-----DLVSWNVMLTGYV 63
           +LR+F+  P   +  YN +I     ++    +   F ++ +      D  S+   L G  
Sbjct: 64  SLRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIA 123

Query: 64  RN---RRLG------DARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNA 114
            +   +R G        R  FD      +     ++S YA+ G  + AR+VF +M   N 
Sbjct: 124 NDGCSKRQGIQLHSHAFRHGFDD----HIFVGTTLISMYAECGCYEYARKVFDEMSQPNV 179

Query: 115 ISWNGLLAAYVHNGRIEEACRLFDSKSDWELISWNCLMGGFVKRKMLGAARKLFDKMHVR 174
           ++WN ++ A    G +E A  LF+      L SWN ++ G+VK   L  AR++F +M +R
Sbjct: 180 VAWNAVVTACFRCGDVEGAWGLFERMPVRNLTSWNTMLAGYVKAGQLWLARRVFCEMKMR 239

Query: 175 DVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           D  SW+TMI G+A+ G               D F       G+ +  + D  R       
Sbjct: 240 DDASWSTMIVGFAKSGSF------------HDAF-------GFFKELLRDRNR------- 273

Query: 235 QKNEISYNAMVAGYVQSNKMDMARELFEAMPSRN----VSSWNTMITGYGQNGDIAQARK 290
             +E+S   +++   Q+   +  + L   M        VS  N +I  Y + G++  A+ 
Sbjct: 274 -PSEVSLTGVLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNVDMAKL 332

Query: 291 LFDMMPQRDC-VSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIA 349
           +F  M    C VSW ++I+  A  G  +EA+ +F E++  G   +  TF   L  C+   
Sbjct: 333 VFQHMSAEKCIVSWTSMIAALAMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSG 392

Query: 350 ALELGKQIHGQVVK-TGYETGCFVGNALLGMYFKCGSIGEANDVFEGIE-EKDVVSWNTM 407
            +E G  +  ++    G E        ++ +Y +   + +A +    +    +V+ W T+
Sbjct: 393 LVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPILPNVIIWRTL 452

Query: 408 IAGYARHG 415
           +   + HG
Sbjct: 453 LGACSIHG 460



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 131/300 (43%), Gaps = 51/300 (17%)

Query: 273 NTMITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGES 332
            T+I+ Y + G    ARK+FD M Q + V+W A+++   + G  E A  +F  +      
Sbjct: 152 TTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGDVEGAWGLFERMPVR--- 208

Query: 333 LNRSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDV 392
            N +++                                   N +L  Y K G +  A  V
Sbjct: 209 -NLTSW-----------------------------------NTMLAGYVKAGQLWLARRV 232

Query: 393 FEGIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLI 452
           F  ++ +D  SW+TMI G+A+ G    A   F+ +     +P E+++ GVLSAC+ AG  
Sbjct: 233 FCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAF 292

Query: 453 DRGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLG 512
           + G      M K   +   S +   +ID   + G ++ A+ + ++M  E    SW +++ 
Sbjct: 293 EFGKILHGFMEKAGFLCIVSVN-NALIDTYSKCGNVDMAKLVFQHMSAEKCIVSWTSMIA 351

Query: 513 ASRIHGNTELGEKAAEMVFKMEPHNSGM----YVLLSNLYAA--SGRWADAGNMRSRMRD 566
           A  +HG     ++A  +  +ME   SG+       +S LYA   SG       + S+MR+
Sbjct: 352 ALAMHGR---ADEAIRVFHEME--ESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRN 406



 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 20/253 (7%)

Query: 1   MRNGHCDSALRVFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMPQRDLVSWNVMLT 60
            R G  + A  +F  MP R+  S+N M++GY++  +  LAR +F +M  RD  SW+ M+ 
Sbjct: 190 FRCGDVEGAWGLFERMPVRNLTSWNTMLAGYVKAGQLWLARRVFCEMKMRDDASWSTMIV 249

Query: 61  GYVRNRRLGDARRLFDSM----PQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAIS 116
           G+ ++    DA   F  +     +   VS   +LS  AQ G A E  ++ +    K    
Sbjct: 250 GFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAG-AFEFGKILHGFMEKAGFL 308

Query: 117 W-----NGLLAAYVHNGRIEEACRLFDSKSDWE-LISWNCLMGGFVKRKMLGAARKLFDK 170
                 N L+  Y   G ++ A  +F   S  + ++SW  ++           A ++F +
Sbjct: 309 CIVSVNNALIDTYSKCGNVDMAKLVFQHMSAEKCIVSWTSMIAALAMHGRADEAIRVFHE 368

Query: 171 MH---VR-DVVSWNTMISGYAQDGDMSQAKNLFDQ-----SPHQDVFTWTAMVSGYVQNG 221
           M    VR D V++ +++   +  G + Q   LF +          +  +  MV  Y +  
Sbjct: 369 MEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMVDLYGRAA 428

Query: 222 MLDEARTFFDQMP 234
            L +A  F  QMP
Sbjct: 429 RLQKAYEFIRQMP 441


>Medtr7g033400.1 | PPR containing protein | HC |
           chr7:12012362-12010888 | 20130731
          Length = 486

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/425 (35%), Positives = 228/425 (53%), Gaps = 36/425 (8%)

Query: 161 LGAARKLFDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDVFTWTAMVSGYVQN 220
           L  A ++F  +H  +   WNT+I  + Q            Q PH  +  +  M    V  
Sbjct: 89  LEHASRIFSSLHKPNSFMWNTLIRAHQQ------------QQPHISLSLYIQMRRHGVIP 136

Query: 221 G------MLDEARTFFDQMPQKNEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNT 274
           G      +L    +  + +P   ++  + +  G                    +    N 
Sbjct: 137 GKHTFPFLLKACSSLSNVLPHCKQVHAHVVKFGL-----------------CFDCHVGNG 179

Query: 275 MITGYGQNGDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLN 334
           ++ GY  +GD+  AR +FD +P ++   W  +I GYAQ   Y EAL++F  +   G   N
Sbjct: 180 LVRGYSVSGDLVDARYVFDEIPMKNLSLWTTMICGYAQNCCYNEALDLFERMVVVGFEPN 239

Query: 335 RSTFSCALSTCADIAALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFE 394
            +T +  LS CA    LELG++IH  +   G E G  +G AL+ MY K G I  A  +F+
Sbjct: 240 GATLASVLSVCARSGCLELGERIHEFMRVKGVEVGVILGTALVYMYAKNGDILTARKLFD 299

Query: 395 GIEEKDVVSWNTMIAGYARHGFGKQALMVFESMKTIG-VKPDEITMVGVLSACSHAGLID 453
            + E++VV+WN MI G A HG  + AL +FE MK    V P+ +T VGVLSAC HAGLID
Sbjct: 300 EMPERNVVTWNAMICGLASHGHVEDALGLFECMKEEEIVVPNAVTFVGVLSACCHAGLID 359

Query: 454 RGTEYFYSMNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGA 513
            G E F SM   + + P+ +HY CM+DLLGR G+L EA+++++ MP++P     GALL A
Sbjct: 360 VGREVFCSMKVVHGIEPTIEHYGCMVDLLGRGGKLLEAEEVIKGMPWKPDVVILGALLAA 419

Query: 514 SRIHGNTELGEKAAEMVFKMEPHNSGMYVLLSNLYAASGRWADAGNMRSRMRDVGVQKVT 573
           S+ +GNTE+ E+  + +  ++PHN G++V LSN+YA +G+W +   +R  M++  ++K  
Sbjct: 420 SKNNGNTEVAERVVKQILTLDPHNHGVHVSLSNMYAEAGQWQEVSRLRKMMKEEKLKKAP 479

Query: 574 GYSWV 578
           G+S V
Sbjct: 480 GWSLV 484



 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 4/240 (1%)

Query: 283 GDIAQARKLFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCAL 342
           G++  A ++F  + + +   W  +I  + Q   +  +L+++I+++R G    + TF   L
Sbjct: 87  GNLEHASRIFSSLHKPNSFMWNTLIRAHQQQQPHI-SLSLYIQMRRHGVIPGKHTFPFLL 145

Query: 343 STCADIA-ALELGKQIHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEKDV 401
             C+ ++  L   KQ+H  VVK G    C VGN L+  Y   G + +A  VF+ I  K++
Sbjct: 146 KACSSLSNVLPHCKQVHAHVVKFGLCFDCHVGNGLVRGYSVSGDLVDARYVFDEIPMKNL 205

Query: 402 VSWNTMIAGYARHGFGKQALMVFESMKTIGVKPDEITMVGVLSACSHAGLIDRGTEYFYS 461
             W TMI GYA++    +AL +FE M  +G +P+  T+  VLS C+ +G ++ G E  + 
Sbjct: 206 SLWTTMICGYAQNCCYNEALDLFERMVVVGFEPNGATLASVLSVCARSGCLELG-ERIHE 264

Query: 462 MNKDYSVTPSSKHYTCMIDLLGRAGRLEEAQDLMRNMPFEPPAASWGALLGASRIHGNTE 521
             +   V       T ++ +  + G +  A+ L   MP E    +W A++     HG+ E
Sbjct: 265 FMRVKGVEVGVILGTALVYMYAKNGDILTARKLFDEMP-ERNVVTWNAMICGLASHGHVE 323



 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 133/287 (46%), Gaps = 24/287 (8%)

Query: 56  NVMLTGYVRNRRLGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMP----H 111
           N ++ GY  +  L DAR +FD +P K++  W  M+ GYAQN   +EA ++F +M      
Sbjct: 178 NGLVRGYSVSGDLVDARYVFDEIPMKNLSLWTTMICGYAQNCCYNEALDLFERMVVVGFE 237

Query: 112 KNAISWNGLLAAYVHNGRIEEACRLFD----SKSDWELISWNCLMGGFVKRKMLGAARKL 167
            N  +   +L+    +G +E   R+ +       +  +I    L+  + K   +  ARKL
Sbjct: 238 PNGATLASVLSVCARSGCLELGERIHEFMRVKGVEVGVILGTALVYMYAKNGDILTARKL 297

Query: 168 FDKMHVRDVVSWNTMISGYAQDGDMSQAKNLFDQSPHQDV-----FTWTAMVSGYVQNGM 222
           FD+M  R+VV+WN MI G A  G +  A  LF+    +++      T+  ++S     G+
Sbjct: 298 FDEMPERNVVTWNAMICGLASHGHVEDALGLFECMKEEEIVVPNAVTFVGVLSACCHAGL 357

Query: 223 LDEARTFFDQMPQKNEIS-----YNAMVAGYVQSNKMDMARELFEAMPSR-NVSSWNTMI 276
           +D  R  F  M   + I      Y  MV    +  K+  A E+ + MP + +V     ++
Sbjct: 358 IDVGREVFCSMKVVHGIEPTIEHYGCMVDLLGRGGKLLEAEEVIKGMPWKPDVVILGALL 417

Query: 277 TGYGQNGDIAQA----RKLFDMMPQRDCVSWAAIISGYAQTGHYEEA 319
                NG+   A    +++  + P    V   ++ + YA+ G ++E 
Sbjct: 418 AASKNNGNTEVAERVVKQILTLDPHNHGVH-VSLSNMYAEAGQWQEV 463



 Score = 90.5 bits (223), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)

Query: 68  LGDARRLFDSMPQKDVVSWNAMLSGYAQNGYADEAREVFYQMPHKNAI----SWNGLLAA 123
           L  A R+F S+ + +   WN ++  + Q      +  ++ QM     I    ++  LL A
Sbjct: 89  LEHASRIFSSLHKPNSFMWNTLIRAHQQQ-QPHISLSLYIQMRRHGVIPGKHTFPFLLKA 147

Query: 124 YVHNGRIEEACRLFDSKSDWELISWNCLMG-----GFVKRKMLGAARKLFDKMHVRDVVS 178
                 +   C+   +      + ++C +G     G+     L  AR +FD++ ++++  
Sbjct: 148 CSSLSNVLPHCKQVHAHVVKFGLCFDCHVGNGLVRGYSVSGDLVDARYVFDEIPMKNLSL 207

Query: 179 WNTMISGYAQDGDMSQAKNLFDQSP----HQDVFTWTAMVSGYVQNGMLDEARTFFDQMP 234
           W TMI GYAQ+   ++A +LF++        +  T  +++S   ++G L+      + M 
Sbjct: 208 WTTMICGYAQNCCYNEALDLFERMVVVGFEPNGATLASVLSVCARSGCLELGERIHEFMR 267

Query: 235 QK----NEISYNAMVAGYVQSNKMDMARELFEAMPSRNVSSWNTMITGYGQNGDIAQARK 290
            K      I   A+V  Y ++  +  AR+LF+ MP RNV +WN MI G   +G +  A  
Sbjct: 268 VKGVEVGVILGTALVYMYAKNGDILTARKLFDEMPERNVVTWNAMICGLASHGHVEDALG 327

Query: 291 LFDMMPQRDCVSWAAIISGYAQTGHYEEALNMFIEIKRDGESLNRSTFSCALSTCADIAA 350
           LF+ M + + V   A+                              TF   LS C     
Sbjct: 328 LFECMKEEEIVVPNAV------------------------------TFVGVLSACCHAGL 357

Query: 351 LELGKQ-------IHGQVVKTGYETGCFVGNALLGMYFKCGSIGEANDVFEGIEEK-DVV 402
           +++G++       +HG +  T    GC V   LLG   + G + EA +V +G+  K DVV
Sbjct: 358 IDVGREVFCSMKVVHG-IEPTIEHYGCMVD--LLG---RGGKLLEAEEVIKGMPWKPDVV 411

Query: 403 SWNTMIAGYARHGFGKQALMVFESMKTI 430
               ++A    +G  + A  V + + T+
Sbjct: 412 ILGALLAASKNNGNTEVAERVVKQILTL 439



 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 111/241 (46%), Gaps = 19/241 (7%)

Query: 12  VFNTMPRRSSVSYNAMISGYLRNARFSLARDLFDKMP----QRDLVSWNVMLTGYVRNRR 67
           VF+ +P ++   +  MI GY +N  ++ A DLF++M     + +  +   +L+   R+  
Sbjct: 196 VFDEIPMKNLSLWTTMICGYAQNCCYNEALDLFERMVVVGFEPNGATLASVLSVCARSGC 255

Query: 68  LGDARRLFDSMPQKDV----VSWNAMLSGYAQNGYADEAREVFYQMPHKNAISWNGLLAA 123
           L    R+ + M  K V    +   A++  YA+NG    AR++F +MP +N ++WN ++  
Sbjct: 256 LELGERIHEFMRVKGVEVGVILGTALVYMYAKNGDILTARKLFDEMPERNVVTWNAMICG 315

Query: 124 YVHNGRIEEACRLFDSKSDWELISWNC-----LMGGFVKRKMLGAARKLFDKMHV----- 173
              +G +E+A  LF+   + E++  N      ++       ++   R++F  M V     
Sbjct: 316 LASHGHVEDALGLFECMKEEEIVVPNAVTFVGVLSACCHAGLIDVGREVFCSMKVVHGIE 375

Query: 174 RDVVSWNTMISGYAQDGDMSQAKNLFDQSP-HQDVFTWTAMVSGYVQNGMLDEARTFFDQ 232
             +  +  M+    + G + +A+ +    P   DV    A+++    NG  + A     Q
Sbjct: 376 PTIEHYGCMVDLLGRGGKLLEAEEVIKGMPWKPDVVILGALLAASKNNGNTEVAERVVKQ 435

Query: 233 M 233
           +
Sbjct: 436 I 436