Miyakogusa Predicted Gene

Lj2g3v0676900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0676900.1 tr|B9IEB1|B9IEB1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1101000 PE=4
SV=1,42.95,5e-17,seg,NULL; coiled-coil,NULL;
GOLGIN-84,NULL,gene.g39758.t1.1
         (495 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g107060.1 | coiled-coil vesicle tethering protein, putativ...   255   6e-68
Medtr8g107060.2 | coiled-coil vesicle tethering protein, putativ...   207   2e-53

>Medtr8g107060.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr8:45231204-45223617 | 20130731
          Length = 667

 Score =  255 bits (652), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 138/150 (92%)

Query: 343 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 402
           MVAKLEGEK+SLEKILEERA QQAQEASQLQ+T METMEAVELEKQKHNNTRME+L RLA
Sbjct: 337 MVAKLEGEKESLEKILEERAKQQAQEASQLQSTMMETMEAVELEKQKHNNTRMEILTRLA 396

Query: 403 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGASRNL 462
           KLET NADLARSL AVQ NLEVEVKQVAELRQK+ SKE VHEELRRS+RNP QTGASRN 
Sbjct: 397 KLETANADLARSLTAVQWNLEVEVKQVAELRQKMASKESVHEELRRSLRNPNQTGASRNQ 456

Query: 463 LASKGVEFEREILEAELSLINDKVSQLQEK 492
           LASKGVEFEREILEAE S INDKV+QLQEK
Sbjct: 457 LASKGVEFEREILEAEHSFINDKVAQLQEK 486



 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/281 (40%), Positives = 146/281 (51%), Gaps = 59/281 (20%)

Query: 46  QIDQQAAESLRKN-EKLRSDELGIH-DAPAAKSGSVVSLKNQLKKKPSENNDYHGKLHSD 103
           QIDQQAA+SLRKN E+L+ +E     DAP  K G  V LK+Q KK   + N+ +GKLHSD
Sbjct: 18  QIDQQAADSLRKNNERLQLEEQSSSIDAPP-KPG--VPLKDQFKK--KKKNNNNGKLHSD 72

Query: 104 P----NFTTAPKSS-PTPTLADADWTQLLSSPTHSIASASGGDHGNGARGFNKNGRKHKD 158
           P      T  PKSS P PT++D DWTQLLSSP       S  +     R   +N +K   
Sbjct: 73  PLKTKTTTALPKSSNPPPTISDGDWTQLLSSP-------SASNSLPAPRILRQNSKKLNS 125

Query: 159 LLLSDVKRNHKTGTSGSRSLQRLNSVK---LTRKTSDDG--------------------- 194
           L +SD+KRNHKT    S SLQRL+S+K      K+SDDG                     
Sbjct: 126 LSVSDIKRNHKT---SSTSLQRLDSLKGDNFIAKSSDDGKESTSSASTDRQSNLEESETD 182

Query: 195 ----MGFTSERHSTDGKPLVEKNDKANQQHQHTFNYRDI-SPPESLQEDNKTL--PMPVS 247
                G  S  ++T  KPL E      + H H  N  D  SPP  L+ED   +   +PV+
Sbjct: 183 AKSTRGHLSVSNNTSDKPLAE----TKEDHVHPLNNIDFSSPPLLLEEDINFVAEAIPVT 238

Query: 248 DLDNAKIA--PDVVPGQLRGAMKARHGLNSLSGNSKSDDFK 286
            +D  + A  P  V  QL+  +K R  LNS+SGNS S+D K
Sbjct: 239 GVDKVREAKFPVDVGCQLKTVIKGRRELNSMSGNSTSNDLK 279


>Medtr8g107060.2 | coiled-coil vesicle tethering protein, putative |
           HC | chr8:45231263-45223617 | 20130731
          Length = 494

 Score =  207 bits (526), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 111/121 (91%)

Query: 343 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 402
           MVAKLEGEK+SLEKILEERA QQAQEASQLQ+T METMEAVELEKQKHNNTRME+L RLA
Sbjct: 337 MVAKLEGEKESLEKILEERAKQQAQEASQLQSTMMETMEAVELEKQKHNNTRMEILTRLA 396

Query: 403 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGASRNL 462
           KLET NADLARSL AVQ NLEVEVKQVAELRQK+ SKE VHEELRRS+RNP QTGASRN 
Sbjct: 397 KLETANADLARSLTAVQWNLEVEVKQVAELRQKMASKESVHEELRRSLRNPNQTGASRNQ 456

Query: 463 L 463
           L
Sbjct: 457 L 457



 Score =  122 bits (306), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 115/281 (40%), Positives = 146/281 (51%), Gaps = 59/281 (20%)

Query: 46  QIDQQAAESLRKN-EKLRSDELGIH-DAPAAKSGSVVSLKNQLKKKPSENNDYHGKLHSD 103
           QIDQQAA+SLRKN E+L+ +E     DAP  K G  V LK+Q KK   + N+ +GKLHSD
Sbjct: 18  QIDQQAADSLRKNNERLQLEEQSSSIDAPP-KPG--VPLKDQFKK--KKKNNNNGKLHSD 72

Query: 104 P----NFTTAPKSS-PTPTLADADWTQLLSSPTHSIASASGGDHGNGARGFNKNGRKHKD 158
           P      T  PKSS P PT++D DWTQLLSSP       S  +     R   +N +K   
Sbjct: 73  PLKTKTTTALPKSSNPPPTISDGDWTQLLSSP-------SASNSLPAPRILRQNSKKLNS 125

Query: 159 LLLSDVKRNHKTGTSGSRSLQRLNSVK---LTRKTSDDG--------------------- 194
           L +SD+KRNHKT    S SLQRL+S+K      K+SDDG                     
Sbjct: 126 LSVSDIKRNHKT---SSTSLQRLDSLKGDNFIAKSSDDGKESTSSASTDRQSNLEESETD 182

Query: 195 ----MGFTSERHSTDGKPLVEKNDKANQQHQHTFNYRDI-SPPESLQEDNKTL--PMPVS 247
                G  S  ++T  KPL E      + H H  N  D  SPP  L+ED   +   +PV+
Sbjct: 183 AKSTRGHLSVSNNTSDKPLAE----TKEDHVHPLNNIDFSSPPLLLEEDINFVAEAIPVT 238

Query: 248 DLDNAKIA--PDVVPGQLRGAMKARHGLNSLSGNSKSDDFK 286
            +D  + A  P  V  QL+  +K R  LNS+SGNS S+D K
Sbjct: 239 GVDKVREAKFPVDVGCQLKTVIKGRRELNSMSGNSTSNDLK 279