Miyakogusa Predicted Gene

Lj2g3v0663770.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0663770.2 Non Characterized Hit- tr|I1KJ56|I1KJ56_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38468 PE,92.22,0,Nop
domain,NULL; NOSIC (NUC001) domain,NOSIC; NOSIC,NOSIC; NOP5NT,NOP5,
N-terminal; NUCLEOLAR PROTEI,CUFF.35191.2
         (271 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g103790.1 | NOP56-like pre RNA processing ribonucleoprotei...   461   e-130
Medtr4g070910.2 | NOP56-like pre RNA processing ribonucleoprotei...   160   1e-39
Medtr4g070910.1 | NOP56-like pre RNA processing ribonucleoprotei...   160   1e-39
Medtr5g010260.1 | NOP56-like pre RNA processing ribonucleoprotei...   157   1e-38
Medtr5g010290.1 | NOP56-like pre RNA processing ribonucleoprotei...    56   3e-08

>Medtr4g103790.1 | NOP56-like pre RNA processing ribonucleoprotein |
           HC | chr4:42931644-42935374 | 20130731
          Length = 524

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/270 (83%), Positives = 246/270 (91%)

Query: 1   MALFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDAL 60
           MALFLL+E+A GYAL EAHG+DEIGQNTEAVRNSV+DL+RFGKVVKLRSFNPFTSAL++L
Sbjct: 1   MALFLLHETALGYALFEAHGIDEIGQNTEAVRNSVTDLSRFGKVVKLRSFNPFTSALESL 60

Query: 61  KQCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEF 120
           +Q NAVSEG++TDELRTVLETNLPKVKEGKK+KFSLGV++ KIGS I E TKIP Q NEF
Sbjct: 61  EQINAVSEGIMTDELRTVLETNLPKVKEGKKAKFSLGVAESKIGSHIHEATKIPVQSNEF 120

Query: 121 VSELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180
           V EL+RGVR HFD+FV DLK GDLEKAQLGL HSYSRAKVKFNVNRVDNMVIQAIFLLDT
Sbjct: 121 VGELIRGVRQHFDKFVGDLKQGDLEKAQLGLCHSYSRAKVKFNVNRVDNMVIQAIFLLDT 180

Query: 181 LDKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDKSKLSEDNISDLTDIVGD 240
           LDKDVNSF+MRVREWYSWHFPELVKIVNDNYLY KVAKFIEDKSKL+ED I  LTD+VGD
Sbjct: 181 LDKDVNSFAMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLAEDKIESLTDLVGD 240

Query: 241 EDKAKEIVEAAKASMGRFLNLVLLLIVISF 270
           EDKAKEIVEAAKASMG+ L+ V L+ V  F
Sbjct: 241 EDKAKEIVEAAKASMGQDLSPVDLINVHMF 270


>Medtr4g070910.2 | NOP56-like pre RNA processing ribonucleoprotein |
           HC | chr4:26711884-26716715 | 20130731
          Length = 553

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 9/221 (4%)

Query: 3   LFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQ 62
           + LL+E+ +G+A+ +     ++ +  E ++N  +  +   KVVKL++FN F +  +AL+ 
Sbjct: 1   MLLLFETPAGFAIFKVLNEGKLSK-VEDLQNEFTTADAARKVVKLKAFNKFANTSEALEA 59

Query: 63  CNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEFVS 122
              + +   +  LR  L  +            +LGV+D K+G+ I E  KI C  N  V 
Sbjct: 60  ATLLIDSKASKGLRKFLRVHC--------ENETLGVADSKLGNIIKEKLKIECVHNNAVM 111

Query: 123 ELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLD 182
           EL+RGVR   +  +  L   D+    LGL HS SR ++KF+ ++VD M++QAI LLD LD
Sbjct: 112 ELMRGVRYQLNELIAGLAVQDMAPMSLGLSHSLSRYRLKFSADKVDTMIVQAIGLLDDLD 171

Query: 183 KDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDK 223
           K++N+++MRVREWY WHFPEL KI+ DN  YA+  K + ++
Sbjct: 172 KELNTYAMRVREWYGWHFPELTKIIVDNIQYARSVKLMGNR 212


>Medtr4g070910.1 | NOP56-like pre RNA processing ribonucleoprotein |
           HC | chr4:26711900-26716625 | 20130731
          Length = 553

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 9/221 (4%)

Query: 3   LFLLYESASGYALLEAHGVDEIGQNTEAVRNSVSDLNRFGKVVKLRSFNPFTSALDALKQ 62
           + LL+E+ +G+A+ +     ++ +  E ++N  +  +   KVVKL++FN F +  +AL+ 
Sbjct: 1   MLLLFETPAGFAIFKVLNEGKLSK-VEDLQNEFTTADAARKVVKLKAFNKFANTSEALEA 59

Query: 63  CNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEFVS 122
              + +   +  LR  L  +            +LGV+D K+G+ I E  KI C  N  V 
Sbjct: 60  ATLLIDSKASKGLRKFLRVHC--------ENETLGVADSKLGNIIKEKLKIECVHNNAVM 111

Query: 123 ELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLD 182
           EL+RGVR   +  +  L   D+    LGL HS SR ++KF+ ++VD M++QAI LLD LD
Sbjct: 112 ELMRGVRYQLNELIAGLAVQDMAPMSLGLSHSLSRYRLKFSADKVDTMIVQAIGLLDDLD 171

Query: 183 KDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDK 223
           K++N+++MRVREWY WHFPEL KI+ DN  YA+  K + ++
Sbjct: 172 KELNTYAMRVREWYGWHFPELTKIIVDNIQYARSVKLMGNR 212


>Medtr5g010260.1 | NOP56-like pre RNA processing ribonucleoprotein |
           HC | chr5:2704214-2700394 | 20130731
          Length = 590

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 148/258 (57%), Gaps = 21/258 (8%)

Query: 3   LFLLYESASGYALLEAHGVDEIGQNTEAVRN-SVSDLNRFGKVVKLRSFNPFTSALDALK 61
           + +L+E+ +G+AL +     ++ +  +  +  S +D  R  KVVKL+ F  F +  +A +
Sbjct: 1   MLVLFETPAGFALFKVLNEGKLSEVQDLWKEFSSADAAR--KVVKLKGFQKFENISEATE 58

Query: 62  QCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPKIGSQISEVTKIPCQCNEFV 121
             + + +G  +  LR  L  +            +L V+D K+G+ I E  KI C  +  V
Sbjct: 59  AASLLIDGKASKGLRKFLRAHC--------DNETLAVADTKLGTIIKEKLKIDCVHSNAV 110

Query: 122 SELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTL 181
            E++RG+R      +  L   D+    LGL HS SR K+KF+ ++VD M++QAI LLD L
Sbjct: 111 MEIMRGIRYQLTELITGLAVQDMAPMSLGLSHSLSRYKLKFSADKVDTMIVQAIGLLDDL 170

Query: 182 DKDVNSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKFIEDK---SKLSEDNISDLTDIV 238
           DK++N+++MRVREWY WHFPEL KI+ DN  YA+  K + D+   +KL      D ++I+
Sbjct: 171 DKELNTYAMRVREWYGWHFPELTKIIQDNIQYARSVKLMGDRINAAKL------DFSEIL 224

Query: 239 GDEDKAKEIVEAAKASMG 256
            +E +A E+ EAA  SMG
Sbjct: 225 TEEVEA-ELKEAAVISMG 241


>Medtr5g010290.1 | NOP56-like pre RNA processing ribonucleoprotein |
           HC | chr5:2709350-2708580 | 20130731
          Length = 147

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 43  KVVKLRSFNPFTSALDALKQCNAVSEGLLTDELRTVLETNLPKVKEGKKSKFSLGVSDPK 102
           KVVKL +F+ F +  +A ++   + +G  +  LR  L  +            +L V+D K
Sbjct: 23  KVVKLIAFSKFETISEATEEARFLIDGKASKGLRKFLRPHC--------DNETLCVTDAK 74

Query: 103 IGSQISEV--TKIPCQCNEFVSELLRGVRLHFDRFVNDLKAGDLEKAQLGLGHSYSRAKV 160
           +G  I E    KI C  N  V EL+RG+R      V DL   D+   +LGL  S S  K+
Sbjct: 75  LGCIIKEKLGPKIKCFHNNAVMELMRGIRYQLTELVTDLAVQDMPPMRLGLSGSLSIYKL 134

Query: 161 KFNVNRVDNMVI 172
           K + ++V  ++I
Sbjct: 135 KHSADKVYILLI 146