Miyakogusa Predicted Gene

Lj2g3v0661590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0661590.1 tr|J7JYT7|J7JYT7_LOTJA NARROW ORGAN 1 OS=Lotus
japonicus GN=NAO1 PE=2 SV=1,91.03,0,HOMEOBOX_2,Homeodomain;
Homeodomain-like,Homeodomain-like; Homeodomain,Homeodomain; seg,NULL;
no des,gene.g39742.t1.1
         (338 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4...   370   e-103
Medtr3g088485.1 | wuschel-related homeobox-like protein | HC | c...   154   2e-37
Medtr8g095580.1 | wuschel-related homeobox-like protein | HC | c...   150   2e-36
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3...   128   7e-30
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2...   109   4e-24
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5...   106   3e-23
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5...   105   9e-23
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2...   103   2e-22
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8...   103   3e-22
Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3...   102   5e-22
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L...    76   5e-14
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4...    76   6e-14
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-...    71   1e-12
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77...    70   3e-12
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5...    67   2e-11
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5...    67   3e-11
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-...    66   4e-11
Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5...    62   7e-10
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9...    58   1e-08
Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3...    56   6e-08

>Medtr8g107210.1 | stenofolia-like protein | HC |
           chr8:45305362-45303362 | 20130731
          Length = 358

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/385 (58%), Positives = 255/385 (66%), Gaps = 77/385 (20%)

Query: 1   MWMVGYNESGAEFNMADYPFNGRKLRPLMPRPI--------------------------- 33
           MWMVGYNE G EFNMADYPF+GRKLRPL+PRP+                           
Sbjct: 1   MWMVGYNE-GGEFNMADYPFSGRKLRPLIPRPVPVPTTSPNNTSTITPSLNRIHGGNDLF 59

Query: 34  ----HLL---ASVTEQNKR-EFN-----TPPVVVSSRWNPTPEQLRALEELYRRGTRTPS 80
               H L   ASV + +KR E N     +  VVVSSRWNPTPEQLRALEELYRRGTRTPS
Sbjct: 60  SQYHHNLQQQASVGDHSKRSELNNNNNPSAAVVVSSRWNPTPEQLRALEELYRRGTRTPS 119

Query: 81  AEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESEAEGPPRDFESSHHDKK 140
           AEQIQQITAQLR+FGKIEGKNVFYWFQNHKARERQKRRRQMES A     +F+S+  +KK
Sbjct: 120 AEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMESAAA----EFDSA-LEKK 174

Query: 141 DLGASRTVFEVEQTKNNWPSSTNCTST--LAEESVSIQSXXXXXXXXXECSRTDGWLQFD 198
           DLGASRTVFEVE TKN  PS+ + TST  LAEESVSIQ            ++ DGWLQFD
Sbjct: 175 DLGASRTVFEVEHTKNWLPSTNSSTSTLHLAEESVSIQ-------RSAAAAKADGWLQFD 227

Query: 199 EGELQQQRRNFMERNATWRMMQF--PCPPQPPHFINTPPQYXXXXXXXXXXXXRLMDQKL 256
           E EL QQRRNFMERNATW MMQ    CP                         RLMD KL
Sbjct: 228 EAEL-QQRRNFMERNATWHMMQLTSSCP-------------TASMSTTTTVTTRLMDPKL 273

Query: 257 IKTHADLSFFISPHTRE--NNSIIHLSSFTTEDNVESQTLQLFPLRNGD-GSSENSNQHH 313
           IKTH +L+ FISPHT +   N+ IHL++ +T  N   QTLQLFP+RNGD G +++ + H+
Sbjct: 274 IKTH-ELNLFISPHTYKERENAFIHLNTSSTHQNESDQTLQLFPIRNGDHGCTDHHHHHN 332

Query: 314 --KETEISVSAMNAPSQFFEFLPLK 336
             KET+IS SA+NAP+QF EFLPLK
Sbjct: 333 IIKETQISASAINAPNQFIEFLPLK 357


>Medtr3g088485.1 | wuschel-related homeobox-like protein | HC |
           chr3:40220146-40220726 | 20130731
          Length = 163

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 93/147 (63%), Gaps = 29/147 (19%)

Query: 1   MWMVGYNESGAEFNMADYPFNGRKLRPLMPRPIHLLASVTEQNKREFNTPPVVVSSRWNP 60
           MWMVGYNE G EFNMADYPF GRKLRPLMPRP+  L   T  N     TP +      N 
Sbjct: 1   MWMVGYNE-GGEFNMADYPFCGRKLRPLMPRPV--LVPTTSPNNTSTITPSLNRIHGGND 57

Query: 61  TPEQ----LR----------------------ALEELYRRGTRTPSAEQIQQITAQLRRF 94
              Q    LR                       +EELYRRGTRTP AEQIQQITAQLR+F
Sbjct: 58  LFSQYHHNLRQQASVGDHSKRSELNNNNNSSATVEELYRRGTRTPYAEQIQQITAQLRKF 117

Query: 95  GKIEGKNVFYWFQNHKARERQKRRRQM 121
           GKIEGKNVFYWFQNHKARERQKRRRQM
Sbjct: 118 GKIEGKNVFYWFQNHKARERQKRRRQM 144


>Medtr8g095580.1 | wuschel-related homeobox-like protein | HC |
           chr8:40005406-40004827 | 20130731
          Length = 165

 Score =  150 bits (378), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 90/147 (61%), Gaps = 27/147 (18%)

Query: 1   MWMVGYNESGAEFNMADYPFNGRKLRPLMPRPIHLLASVTEQNKREFNTPPVVVSSRWNP 60
           MWMVGY+E G EFNMADYP  GRKLRPLM RP+ +    T  N     TP +      N 
Sbjct: 1   MWMVGYSE-GGEFNMADYPLCGRKLRPLMSRPVPIPVPTTSPNNTSTITPSLNRIHGGND 59

Query: 61  TPEQLR--------------------------ALEELYRRGTRTPSAEQIQQITAQLRRF 94
              Q                            A+EELYRRGTRTPSAEQIQQITAQLR+ 
Sbjct: 60  LFSQYHHNLQQQASVGDHSKRSELNNNNNPSAAVEELYRRGTRTPSAEQIQQITAQLRKI 119

Query: 95  GKIEGKNVFYWFQNHKARERQKRRRQM 121
           GKIEGKNVFYWFQNHKARERQKRRRQM
Sbjct: 120 GKIEGKNVFYWFQNHKARERQKRRRQM 146


>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
           chr4:32905916-32907479 | 20130731
          Length = 184

 Score =  128 bits (322), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 81/112 (72%), Gaps = 2/112 (1%)

Query: 55  SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 114
           SSRW+PTP QL  LEELYR+G +TPSAEQIQQI +QLR+FGKIEGKNVFYWFQNHKARER
Sbjct: 62  SSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARER 121

Query: 115 QKRRR-QMESEAEGPPRDFESSHHDKKDLGASRTVFEVEQTKNNWPSSTNCT 165
           QKRRR +ME   E      +    + K    + T   V++TK  W +++NC+
Sbjct: 122 QKRRRLEMEETTEDKKEKEKYVMGNSKKQEGAETGGGVKETK-KWATTSNCS 172


>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
           chr7:21930278-21929162 | 20130731
          Length = 206

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 56/67 (83%)

Query: 55  SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 114
           SSRW+PT EQL  LEELYR G RTPSA QIQQIT  L  +G+IEGKNVFYWFQNHKAR+R
Sbjct: 6   SSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDR 65

Query: 115 QKRRRQM 121
           QK RR++
Sbjct: 66  QKLRRKL 72


>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 228

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 55  SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 114
            +RWNPT EQ+  LE LYR G RTP+A+QI+QIT QL ++GKIEGKNVFYWFQNHKARER
Sbjct: 88  GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARER 147

Query: 115 QKRRR 119
           QK++R
Sbjct: 148 QKQKR 152


>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 236

 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 56/65 (86%)

Query: 55  SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 114
            +RWNPT EQ+  LE LYR G RTP+A+QI+QIT QL ++GKIEGKNVFYWFQNHKARER
Sbjct: 88  GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARER 147

Query: 115 QKRRR 119
           QK++R
Sbjct: 148 QKQKR 152


>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
           chr4:23615955-23617663 | 20130731
          Length = 257

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 57/64 (89%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RWNPT EQ+  LE LY++G +TPSAE+IQ+ITA+LR +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 25  RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQK 84

Query: 117 RRRQ 120
           ++++
Sbjct: 85  QKQE 88


>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
           chr5:8555099-8553751 | 20130731
          Length = 302

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 58/65 (89%), Gaps = 1/65 (1%)

Query: 55  SSRWNPTPEQLRALEELY-RRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARE 113
           S+RW PT +Q+R L++LY   G R+PSAEQIQ+I+A+LR++GKIEGKNVFYWFQNHKARE
Sbjct: 28  STRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARE 87

Query: 114 RQKRR 118
           RQK+R
Sbjct: 88  RQKKR 92


>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
           chr5:35185060-35183966 | 20130731
          Length = 184

 Score =  102 bits (254), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RWNPT EQ++ L EL+R G RTPS +QIQ+I+ QL  +GKIE KNVFYWFQNHKARERQK
Sbjct: 33  RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92

Query: 117 RRR 119
           RR+
Sbjct: 93  RRK 95


>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC |
           chr7:8283410-8286927 | 20130731
          Length = 590

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RWNP P+Q+R LE ++  G   P  E+I +I  QL+ FG++   NVFYWFQN K+R +QK
Sbjct: 47  RWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQK 106

Query: 117 RR 118
           +R
Sbjct: 107 KR 108


>Medtr2g015000.1 | wuschel homeobox protein | HC |
           chr2:4393059-4395325 | 20130731
          Length = 457

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RWNP PEQ+R LE ++  G   P  E+I++I AQL+ +G++   NVFYWFQN K+R + K
Sbjct: 55  RWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114

Query: 117 RRR 119
            R 
Sbjct: 115 LRH 117


>Medtr4g088070.1 | wuschel homeobox protein | LC |
           chr4:34685878-34688712 | 20130731
          Length = 413

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW P PEQ+R LE +Y  G + P  ++I++I  QL+ FG+I   +VFYWFQN K++ + K
Sbjct: 29  RWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGKNK 88

Query: 117 R 117
           +
Sbjct: 89  K 89


>Medtr7g023810.1 | homeodomain protein HB2 | HC |
           chr7:7798636-7797897 | 20130731
          Length = 183

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW PTP QL++LE ++   T TPS E+I++ITA L + G+I   +V+ WFQN +AR + K
Sbjct: 68  RWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGK 127

Query: 117 RRRQMESEAEGPPRDFESSHHDKK 140
           ++  +  E   P  + E   +DKK
Sbjct: 128 QQNNVNDE---PEVETEVDSNDKK 148


>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
           chr1:52025869-52029102 | 20130731
          Length = 262

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW PTP QL+ LE ++ +G  TPS E+I++I  +L + G+I   NV+ WFQN +AR ++K
Sbjct: 85  RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144

Query: 117 RRRQMESEAEGPPRDFESSHHDKK 140
            +    S  E    + E    DKK
Sbjct: 145 MQNGGTSNTESEV-ETEVDSKDKK 167


>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
           chr1:52025791-52029215 | 20130731
          Length = 264

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW PTP QL+ LE ++ +G  TPS E+I++I  +L + G+I   NV+ WFQN +AR ++K
Sbjct: 85  RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144

Query: 117 RRRQMESEAEGPPRDFESSHHDKK 140
            +    S  E    + E    DKK
Sbjct: 145 MQNGGTSNTESEV-ETEVDSKDKK 167


>Medtr4g088080.1 | wuschel homeobox protein | LC |
           chr4:34693672-34695281 | 20130731
          Length = 319

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW P PEQ+  LE +Y  GT  P  ++I++I  QL  FG++   +VFYWFQN K R +  
Sbjct: 40  RWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRSKTN 99

Query: 117 R 117
           +
Sbjct: 100 K 100


>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
           chr3:54113734-54116409 | 20130731
          Length = 215

 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 57  RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 116
           RW P P QL+ LE ++  G  TP+ ++I+ IT +L + G+I   NV+ WFQN +AR ++K
Sbjct: 82  RWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRK 141

Query: 117 R 117
           +
Sbjct: 142 Q 142


>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
           chr6:9379269-9376397 | 20130731
          Length = 300

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%)

Query: 54  VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 108
           V SRW P PEQ+  LE ++  G   P  ++  +I   L +FG +   NVFYWFQN
Sbjct: 29  VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQN 83


>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
           chr7:33813041-33816667 | 20130731
          Length = 272

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query: 54  VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWF 106
           V SRW P PEQ+  LE ++  G   P  E+  +I   L +FG +   NVFYWF
Sbjct: 25  VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWF 77