Miyakogusa Predicted Gene

Lj2g3v0636870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636870.1 Non Characterized Hit- tr|I1MEF5|I1MEF5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56918
PE,89.91,0,4FE4S_FER_1,4Fe-4S ferredoxin, iron-sulphur binding,
conserved site; Fer4_7,4Fe-4S binding domain; s,CUFF.35176.1
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g010570.1 | NADH dehydrogenase [ubiquinone] iron-sulfur pr...   402   e-112
Medtr8g010570.3 | NADH dehydrogenase [ubiquinone] iron-sulfur pr...   400   e-112
Medtr8g010570.2 | NADH dehydrogenase [ubiquinone] iron-sulfur pr...   365   e-101
Medtr7g021700.1 | NAD(P)H-quinone oxidoreductase subunit 1 | HC ...    65   6e-11
Medtr4g006100.1 | NAD(P)H-quinone oxidoreductase subunit H | HC ...    65   7e-11
Medtr0002s0160.1 | NADH-plastoquinone oxidoreductase subunit I, ...    65   7e-11
Medtr6g042210.1 | NADH-plastoquinone oxidoreductase subunit I | ...    64   1e-10
Medtr3g450170.1 | NADH-plastoquinone oxidoreductase subunit I | ...    64   1e-10
Medtr3g054410.1 | NADH-quinone oxidoreductase, chain I | HC | ch...    55   7e-08
Medtr5g015855.1 | NAD(P)H-quinone oxidoreductase subunit I | HC ...    51   9e-07

>Medtr8g010570.1 | NADH dehydrogenase [ubiquinone] iron-sulfur
           protein | HC | chr8:2777284-2769170 | 20130731
          Length = 242

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/230 (85%), Positives = 206/230 (89%), Gaps = 6/230 (2%)

Query: 10  AEMAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKL 69
           +EMAAFLARKSL ALRTRQLAVAGQGL ++QNYGMRLS+H Y+TK       +DEEREKL
Sbjct: 19  SEMAAFLARKSLLALRTRQLAVAGQGLHNTQNYGMRLSSHLYSTK------LEDEEREKL 72

Query: 70  AREISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHA 129
           A+EISKDWS+VFERSINTLFLTELVRGLMLTLKYFF++ VTINYPFEKGPLSPRFRGEHA
Sbjct: 73  AKEISKDWSTVFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHA 132

Query: 130 LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC 189
           LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC
Sbjct: 133 LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC 192

Query: 190 PVDAIVEGPNFEFVTETHXXXXXXXXXXXXNGDRWETEIAENLRSESLYR 239
           PVDAIVEGPNFEF TETH            NGDRWETEIAENLRSESLYR
Sbjct: 193 PVDAIVEGPNFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 242


>Medtr8g010570.3 | NADH dehydrogenase [ubiquinone] iron-sulfur
           protein | HC | chr8:2776966-2769109 | 20130731
          Length = 222

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/228 (85%), Positives = 204/228 (89%), Gaps = 6/228 (2%)

Query: 12  MAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKLAR 71
           MAAFLARKSL ALRTRQLAVAGQGL ++QNYGMRLS+H Y+TK       +DEEREKLA+
Sbjct: 1   MAAFLARKSLLALRTRQLAVAGQGLHNTQNYGMRLSSHLYSTK------LEDEEREKLAK 54

Query: 72  EISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALR 131
           EISKDWS+VFERSINTLFLTELVRGLMLTLKYFF++ VTINYPFEKGPLSPRFRGEHALR
Sbjct: 55  EISKDWSTVFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHALR 114

Query: 132 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 191
           RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV
Sbjct: 115 RYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 174

Query: 192 DAIVEGPNFEFVTETHXXXXXXXXXXXXNGDRWETEIAENLRSESLYR 239
           DAIVEGPNFEF TETH            NGDRWETEIAENLRSESLYR
Sbjct: 175 DAIVEGPNFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>Medtr8g010570.2 | NADH dehydrogenase [ubiquinone] iron-sulfur
           protein | HC | chr8:2777284-2770177 | 20130731
          Length = 222

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/198 (88%), Positives = 186/198 (93%), Gaps = 6/198 (3%)

Query: 10  AEMAAFLARKSLQALRTRQLAVAGQGLQSSQNYGMRLSAHSYATKHSFSNDKDDEEREKL 69
           +EMAAFLARKSL ALRTRQLAVAGQGL ++QNYGMRLS+H Y+TK       +DEEREKL
Sbjct: 19  SEMAAFLARKSLLALRTRQLAVAGQGLHNTQNYGMRLSSHLYSTK------LEDEEREKL 72

Query: 70  AREISKDWSSVFERSINTLFLTELVRGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHA 129
           A+EISKDWS+VFERSINTLFLTELVRGLMLTLKYFF++ VTINYPFEKGPLSPRFRGEHA
Sbjct: 73  AKEISKDWSTVFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHA 132

Query: 130 LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC 189
           LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC
Sbjct: 133 LRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC 192

Query: 190 PVDAIVEGPNFEFVTETH 207
           PVDAIVEGPNFEF TETH
Sbjct: 193 PVDAIVEGPNFEFSTETH 210


>Medtr7g021700.1 | NAD(P)H-quinone oxidoreductase subunit 1 | HC |
           chr7:6928370-6931637 | 20130731
          Length = 635

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 109 VTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAE-EREDGSR 167
           VTI YP+EK   S RFRG     R     ++CIAC++C  +CP     ++ + E +   +
Sbjct: 512 VTIQYPYEKLITSERFRG-----RIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKK 566

Query: 168 RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
           R   Y ID   CI+CG C E CP + +     +E  T
Sbjct: 567 RLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELST 603


>Medtr4g006100.1 | NAD(P)H-quinone oxidoreductase subunit H | HC |
           chr4:503616-507751 | 20130731
          Length = 899

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 109 VTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAE-EREDGSR 167
           VTI YP+EK   S RFRG     R     ++CIAC++C  +CP     ++ + E +   +
Sbjct: 776 VTIQYPYEKLITSERFRG-----RIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKK 830

Query: 168 RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
           R   Y ID   CI+CG C E CP + +     +E  T
Sbjct: 831 RLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELST 867


>Medtr0002s0160.1 | NADH-plastoquinone oxidoreductase subunit I,
           putative | LC | scaffold0002:168673-170001 | 20130731
          Length = 283

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 95  RGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQA 154
           +  + TL +     +TI+YP+EK     RFRG     R     ++CIAC++C  +CP   
Sbjct: 26  QSFITTLSHTNRLPITIHYPYEKSITPERFRG-----RIHFEFDKCIACEVCVRVCPIDL 80

Query: 155 ITIEAE-EREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
             ++ + E +   +R   Y ID   CI+CG C E CP + +     +E  T
Sbjct: 81  PVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELST 131


>Medtr6g042210.1 | NADH-plastoquinone oxidoreductase subunit I | HC
           | chr6:14543700-14544185 | 20130731
          Length = 161

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 95  RGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQA 154
           +  ++ L +     VTI YP+EK   S RFRG     R     ++CIAC++C  +CP   
Sbjct: 24  QSFIIILSHANRLPVTIQYPYEKLITSERFRG-----RIHFEFDKCIACEVCVRVCPIDL 78

Query: 155 ITIEAE-EREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
             ++ + E +   +R   Y ID   CI+CG C E CP + +     +E  T
Sbjct: 79  PVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELST 129


>Medtr3g450170.1 | NADH-plastoquinone oxidoreductase subunit I | HC
           | chr3:17224011-17222573 | 20130731
          Length = 161

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 95  RGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQA 154
           +  ++ L +     VTI YP+EK   S RFRG     R     ++CIAC++C  +CP   
Sbjct: 24  QSFIIILSHANRLPVTIQYPYEKLITSERFRG-----RIHFEFDKCIACEVCVRVCPIDL 78

Query: 155 ITIEAE-EREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
             ++ + E +   +R   Y ID   CI+CG C E CP + +     +E  T
Sbjct: 79  PVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELST 129


>Medtr3g054410.1 | NADH-quinone oxidoreductase, chain I | HC |
           chr3:21595772-21596200 | 20130731
          Length = 142

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 95  RGLMLTLKYFFEQKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQA 154
           +  ++ L +     VTI YP++K   S RFRG     R     ++CIAC++C  +C    
Sbjct: 21  QSFIIILSHANRLPVTIQYPYQKLITSERFRG-----RIHFEFDKCIACEVCVRVCSIDL 75

Query: 155 ITIEAE-EREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFVT 204
             ++ + E +   +R   Y ID   CI+CG C E  P + +     +E  T
Sbjct: 76  PVVDWKLETDIRKKRLLNYSIDFRICIFCGNCIEYYPTNCLSMTEEYELST 126


>Medtr5g015855.1 | NAD(P)H-quinone oxidoreductase subunit I | HC |
           chr5:5570499-5569403 | 20130731
          Length = 145

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 121 SPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAE-EREDGSRRTTRYDIDMTKC 179
           S RFRG     R     ++CIAC++C  +CP     ++ + E +   +R   Y ID   C
Sbjct: 34  SERFRG-----RIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGIC 88

Query: 180 IYCGFCQEACPVDAIVEGPNFEFVT 204
           I+CG C E CP + +     +E  T
Sbjct: 89  IFCGNCIEYCPTNCLSMTEEYELST 113