Miyakogusa Predicted Gene

Lj2g3v0636830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636830.1 Non Characterized Hit- tr|C6SZ62|C6SZ62_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9639
PE=,91.71,0,Ssu72,RNA polymerase II subunit A; FAMILY NOT NAMED,RNA
polymerase II subunit A; seg,NULL,CUFF.35122.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0332s0040.1 | ubiquitin-conjugating enzyme | HC | scaffold0...   328   2e-90

>Medtr0332s0040.1 | ubiquitin-conjugating enzyme | HC |
           scaffold0332:9825-16847 | 20130731
          Length = 432

 Score =  328 bits (842), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 154/190 (81%), Positives = 164/190 (86%)

Query: 1   MKFRYAMVCSSNQNRSMEAHFLLKRQGFDVCSYGTGAHVKLPGPSLREPNVYDFGTPYKH 60
           MKFRYAMVCSSNQNRSMEAHFL KRQGFDV SYGTG HVKLPGPSLREPNVY+FGTPYK+
Sbjct: 1   MKFRYAMVCSSNQNRSMEAHFLFKRQGFDVSSYGTGTHVKLPGPSLREPNVYEFGTPYKY 60

Query: 61  MLDDLRRKDPELYKRNGILPMLKRNSNVKLAPQRWQENAADGSFDIVFTFEEKVFDMVIE 120
           MLD+LRRKDPELYKRNGILPMLKRN+ VKLAPQRWQENAADG FD+V TFEEKVFDMV+E
Sbjct: 61  MLDELRRKDPELYKRNGILPMLKRNAAVKLAPQRWQENAADGIFDVVITFEEKVFDMVVE 120

Query: 121 DLHNRDHVLLKTVLVINLEVKDNHEEAAVGARLTLDLCQXXXXXXXXXXXXXXIIGGFEK 180
           DLHNRDHVLLKTVL++NLEVKDNHEEAA+GAR TLD CQ              +I  FEK
Sbjct: 121 DLHNRDHVLLKTVLIVNLEVKDNHEEAAIGARQTLDFCQEIEAVESWEESIDDVIASFEK 180

Query: 181 QHRRKLLYSI 190
           QHRRKLL  I
Sbjct: 181 QHRRKLLAVI 190