Miyakogusa Predicted Gene

Lj2g3v0636820.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0636820.1 tr|I0Z3N6|I0Z3N6_9CHLO Translational machinery
component OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,46.39,0.00000000000009,39S RIBOSOMAL PROTEIN L18,
MITOCHONDRIAL,NULL; Translational machinery components,NULL; no
descripti,CUFF.35123.1
         (114 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114200.1 | 50S ribosomal L18-like protein | HC | chr1:515...   162   7e-41
Medtr3g012540.1 | structural constituent of ribosome protein | H...    60   5e-10
Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC ...    55   1e-08
Medtr7g083650.1 | 50S ribosomal L18-like protein | HC | chr7:322...    46   8e-06

>Medtr1g114200.1 | 50S ribosomal L18-like protein | HC |
           chr1:51533429-51531111 | 20130731
          Length = 114

 Score =  162 bits (409), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 86/100 (86%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +LKPYVL+MHFTNKYVSAQVIH            QEKALRSSLET RDVAAAAKIGK+LA
Sbjct: 15  YLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLA 74

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKLL 114
           ERL LK+IPAVSVHLKREQ+YHGKVKAVIDSLREAGV+LL
Sbjct: 75  ERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVRLL 114


>Medtr3g012540.1 | structural constituent of ribosome protein | HC |
           chr3:3539643-3535836 | 20130731
          Length = 187

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L ++ D+ A   IG+ILA
Sbjct: 84  YMEPFTLDVFISKRFVSASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACIAIGRILA 143

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGVKL 113
           ER +  ++   S   +   K+ GK++AV+ SL + G+ L
Sbjct: 144 ERAMEADVYTASYTPRDRDKFEGKIRAVVQSLIDNGIDL 182


>Medtr4g032660.1 | 50S ribosomal protein L18 family protein | HC |
           chr4:11256027-11260142 | 20130731
          Length = 199

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 56/97 (57%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKRDVAAAAKIGKILA 74
           +++P++L + F+ K+V A+V H              K LR+SL +  D  A   IG+++A
Sbjct: 100 YMRPFLLDIFFSKKFVHAKVTHRGTSKVICVATTNAKDLRNSLPSLIDPEACRVIGRLIA 159

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVIDSLREAGV 111
           ER    ++ A++   +++++  G++  +ID+++E G+
Sbjct: 160 ERSKEADVYAMAYEPRKKERIEGRLGIIIDTVKENGI 196


>Medtr7g083650.1 | 50S ribosomal L18-like protein | HC |
           chr7:32201784-32203998 | 20130731
          Length = 124

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETKR--DVAAAAKIGKI 72
             K YVLR+  + KY++A V+              E  ++ SLE  R  +  AAA +G++
Sbjct: 3   LTKRYVLRLFISIKYITANVVDRNSGRIVATSSTAEHDIKQSLECGRSCNAKAAAVVGEV 62

Query: 73  LAERL---LLKEIPAVSVHL-------KREQKYHGKVKAVIDSLREAGVKLL 114
           LA RL    L E     +H+       K+  K   K+ AV+++L+  GVKL+
Sbjct: 63  LARRLKVEGLNEGEGRGIHVNVNKEIEKKGFKSQTKILAVVNALKYNGVKLV 114