Miyakogusa Predicted Gene
- Lj2g3v0635810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0635810.1 tr|D7KJP0|D7KJP0_ARALL Agenet domain-containing
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARALY,28.52,7e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Agenet,Agenet-like domain; Tudor-like domain
presen,NODE_19654_length_1145_cov_273.335358.path1.1
(278 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g084210.1 | agenet domain protein | HC | chr1:37618390-376... 84 1e-16
Medtr2g033390.1 | plant tudor-like protein | LC | chr2:12683183-... 82 8e-16
Medtr4g026550.1 | agenet domain protein | LC | chr4:9140128-9137... 66 3e-11
Medtr4g024680.1 | F-box/RNI superfamily protein | LC | chr4:8360... 56 3e-08
Medtr4g079980.1 | agenet domain protein | LC | chr4:30963203-309... 56 3e-08
Medtr4g024810.1 | agenet domain protein | LC | chr4:8410108-8412... 56 4e-08
Medtr4g023710.1 | agenet domain protein | LC | chr4:8042523-8040... 56 4e-08
Medtr5g089220.1 | agenet domain protein | HC | chr5:38782448-387... 55 8e-08
Medtr4g024780.1 | agenet domain protein | LC | chr4:8402196-8405... 54 1e-07
Medtr5g089140.1 | agenet domain protein | HC | chr5:38743787-387... 53 4e-07
Medtr4g104300.1 | F-box/RNI/FBD-like domain protein | LC | chr4:... 52 9e-07
Medtr7g017280.1 | agenet domain protein | HC | chr7:5475099-5477... 51 1e-06
Medtr3g065560.1 | agenet domain protein | LC | chr3:29626838-296... 51 1e-06
Medtr4g079830.1 | agenet domain protein | HC | chr4:30897081-308... 50 3e-06
Medtr5g089250.1 | agenet domain protein | HC | chr5:38788620-387... 48 8e-06
>Medtr1g084210.1 | agenet domain protein | HC |
chr1:37618390-37617540 | 20130731
Length = 199
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
F G VEV SD G WFL +VE++ F+++V Y+ L+DD+S K L EE++ +H
Sbjct: 56 FVVGALVEVCSDEKGLKGAWFLGTIVELKRH--FRFVVEYEALIDDDS-KPLREELNIRH 112
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKIIEVQNDNI 227
IRP P T D A++K D VDA+ GW + +V D+
Sbjct: 113 IRPRPPKTDDV-------------------AEFKFFDEVDAFHNDGWWVGIVTKVVGDSK 153
Query: 228 YKVFLKGDEQEKDNFDPITLRRHYDWVDRKWEIASQ 263
Y VF + ++E + F LR H DW+DR+W +AS+
Sbjct: 154 YVVFFRSFKEEME-FHHSQLRLHQDWMDRRWVMASK 188
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 1 MVEY-TYCEQGTNPRVEFVSIDNLRPRPPLKPH-HDFKSGDKVDTYNDKGSWLEGHITST 58
+VEY + + P E ++I ++RPRPP +FK D+VD +++ G W+ G +T
Sbjct: 90 VVEYEALIDDDSKPLREELNIRHIRPRPPKTDDVAEFKFFDEVDAFHNDGWWV-GIVTKV 148
Query: 59 LSDGRSFVCYNDPNQKFLFPNEKLRAHHEWIDDHWGPPTQQPKKA 103
+ D + V + ++ F + +LR H +W+D W ++ +A
Sbjct: 149 VGDSKYVVFFRSFKEEMEFHHSQLRLHQDWMDRRWVMASKLIAQA 193
>Medtr2g033390.1 | plant tudor-like protein | LC |
chr2:12683183-12686425 | 20130731
Length = 471
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 53/219 (24%)
Query: 78 PNEKLRAHHEWID-------DHWGPPTQQPK-KAEQEL---------------------F 108
PN++L+ ++ID W PP QP+ K QE+ F
Sbjct: 8 PNKQLKEKEDYIDVVGDAVHACWVPPLLQPQDKPPQEIKKEPKVKIKFKFTGKPKNEPKF 67
Query: 109 RKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLL-DDNSPKYLEEEIDAQH 167
RKG+ VEVSSD +GY WF+A +++ G K+LV ++ LL +D + L+EEI+ +
Sbjct: 68 RKGEIVEVSSDEEGYQGAWFVATIIDTL--GNEKFLVEHRDLLMNDGGIEVLKEEIETKF 125
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKIIEVQNDNI 227
IRP P+ + + G +K VDAW GW ++E+ N
Sbjct: 126 IRPCPPH-------VPMFG------------SFKRLQEVDAWYNDGWWEGMVVELVNSEE 166
Query: 228 YKVFLKGDEQEKDNFDPITLRRHYDWVDRKWEIASQGSS 266
V + +E K F+ LR H DW+D KW ++S+ SS
Sbjct: 167 CYVRFRNNEVLK--FESSKLRPHQDWIDGKWIMSSKESS 203
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 113/289 (39%), Gaps = 73/289 (25%)
Query: 23 LRPRPPLKPHH-DFKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFLFPNEK 81
+RP PP P FK +VD + + G W EG + ++ +V + + N+ F + K
Sbjct: 126 IRPCPPHVPMFGSFKRLQEVDAWYNDG-WWEGMVVELVNSEECYVRFRN-NEVLKFESSK 183
Query: 82 LRAHHEWIDDHW--------------------------------GPPTQQPKKAEQEL-- 107
LR H +WID W GP + K +++
Sbjct: 184 LRPHQDWIDGKWIMSSKESSERVKKFGDVIHETENLGGTKLILKGPIPSESAKHNRDMIS 243
Query: 108 -----------FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSP 156
F KG VEV SD GY +W+ A VV++ G KYLV Y L D+
Sbjct: 244 TVHNGSKFDLHFYKGTNVEVKSDEQGYEGSWYPATVVDLYQNG--KYLVEYSTLKTDDLT 301
Query: 157 KYLEEEIDAQHIRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRY 216
+ L+E +D IRP P+ D +Y + VDAW GW
Sbjct: 302 QQLKEVVDVSDIRPRPPDI-------------------DHFCRYVRQEWVDAWYNDGWWE 342
Query: 217 AKIIEVQ---NDNIYKVFLKGDEQEKDNFDPITLRRHYDWVDRKWEIAS 262
+ V N Y+V+ E F+ LR H W+D +W +AS
Sbjct: 343 GVVSNVGHGLNGFKYQVYF-WTSNEVLEFEHNHLRPHQYWIDGRWVLAS 390
>Medtr4g026550.1 | agenet domain protein | LC | chr4:9140128-9137874
| 20130731
Length = 497
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 18 VSIDNLRPRP-PLKPHHDFKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFL 76
V + LRP P P+ + + K GDKV+ + K W EG +++ L +GR VC+ D +++ +
Sbjct: 49 VGLHQLRPVPTPVSDYWEVKIGDKVEAFR-KHRWWEGRVSADLGNGRFLVCFTD-SEEMV 106
Query: 77 FPNEKLRAHHEWIDDHWGPPTQQPKKAEQELFRKG 111
FP + LR H +WI+ +W PP K+ +E R+
Sbjct: 107 FPKDLLRIHRQWINHNWVPPITNHKELRREQKRQS 141
>Medtr4g024680.1 | F-box/RNI superfamily protein | LC |
chr4:8360372-8355301 | 20130731
Length = 856
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 12 NPRVEFVSIDNLRPRPPLKPHHDFKSGDKVDTYNDKGSWLEGHITSTL-SDGRSFVCYND 70
N R V + LRP P + K GDKV+ + K W EGH++ + S G+ F +
Sbjct: 43 NVRPAVVGVHQLRPVPRTVRDWEVKIGDKVEAFG-KQRWREGHVSEVIGSTGKLFSVRFN 101
Query: 71 PNQKFLFPNEKLRAHHEWIDDHWGP--PTQQPKKAEQELFRK 110
++ + EKLR H +WI+ +W P QQ K +E ++
Sbjct: 102 DWKEMIVSKEKLRVHRKWINHNWVPRITNQQLKNNSKEFCKE 143
>Medtr4g079980.1 | agenet domain protein | LC |
chr4:30963203-30962742 | 20130731
Length = 153
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
++ GD VEV S +G++ ++F A +V GK Y++RYK+LL D+ + L E + ++
Sbjct: 10 YKVGDKVEVCSKEEGFVGSYFEATIVSCLESGK--YVIRYKNLLKDDESQLLMETLLSKD 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKI----IEVQ 223
+RP P R+ +K++L +VD + GW KI I ++
Sbjct: 68 LRPSQPRVRN-------------------PSKFQLNQKVDVFYKDGWWVGKIASEKILME 108
Query: 224 NDNIYKVFL 232
N+ Y V+
Sbjct: 109 NNYYYSVYF 117
>Medtr4g024810.1 | agenet domain protein | LC | chr4:8410108-8412053
| 20130731
Length = 469
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 18 VSIDNLRPRPPLKPHH-DFKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFL 76
V + LRP P L+ + K GDKV+ + K W EG ++ L +G VC+ D + +
Sbjct: 55 VGLHQLRPVPTLEIDDWEVKIGDKVEAFR-KHRWWEGRVSEDLGNGSFRVCFTDSGE-IV 112
Query: 77 FPNEKLRAHHEWIDDHWGPPTQQPK 101
FP + LR H +WI+ +W PP K
Sbjct: 113 FPKDLLRVHRKWINHNWVPPITNHK 137
>Medtr4g023710.1 | agenet domain protein | LC | chr4:8042523-8040576
| 20130731
Length = 490
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 18 VSIDNLRPRPPLKPHHD---FKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQK 74
V + LRP P P D K GDKV+ + K W EG + L +G VC+ D +++
Sbjct: 55 VGLHQLRPVP--TPESDDWEVKIGDKVEAFR-KQRWWEGRVIEDLGNGSFRVCFTD-SEE 110
Query: 75 FLFPNEKLRAHHEWIDDHWGPP-TQQPKKAEQE 106
+FP + LR H +WI+ +W PP T Q K +E
Sbjct: 111 IVFPKDLLRVHRQWINHNWVPPITPQQIKNHKE 143
>Medtr5g089220.1 | agenet domain protein | HC |
chr5:38782448-38782888 | 20130731
Length = 146
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 25/129 (19%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
++ GD VEV S+ +G++ ++F A +V GK Y++RYK+LL D+ + L E + +
Sbjct: 10 YKVGDKVEVCSEDEGFVGSYFEATIVSCLESGK--YVIRYKNLLKDDESELLMETLFPKD 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKI----IEVQ 223
+RP+ P+ R+ K+KL +VD + GW KI I ++
Sbjct: 68 LRPIPPHVRNP-------------------LKFKLNQKVDVFDNDGWWVGKIASEKILME 108
Query: 224 NDNIYKVFL 232
Y V+
Sbjct: 109 KSCYYSVYF 117
>Medtr4g024780.1 | agenet domain protein | LC | chr4:8402196-8405150
| 20130731
Length = 514
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 18 VSIDNLRPRPPLKPHHDFKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFLF 77
V I +RP P + K GD VD + +G W +GHI L G+ V K +F
Sbjct: 53 VGIHQIRPVPSPVSDFELKIGDDVDVFWKQG-WWKGHIKEDLGYGKFRVTVTGTPTK-VF 110
Query: 78 PNEKLRAHHEWIDDHWGPPTQQPKKAEQE 106
EKLR H WI D+W PP Q + +E
Sbjct: 111 SKEKLRIHRNWIIDNWVPPIPQKLRGTEE 139
>Medtr5g089140.1 | agenet domain protein | HC |
chr5:38743787-38743347 | 20130731
Length = 146
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
++ GD VEV S +G++ ++F A +V GK Y++RYK+LL D+ + L E + +
Sbjct: 10 YKVGDKVEVCSKEEGFVGSYFEATIVSCLESGK--YVIRYKNLLKDDESELLMETLFPKD 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKI 219
+RPL P R+ ++++L +VD + GW KI
Sbjct: 68 LRPLPPRVRN-------------------PSRFELNQKVDVFDNDGWWVGKI 100
>Medtr4g104300.1 | F-box/RNI/FBD-like domain protein | LC |
chr4:43145791-43142180 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 36 KSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFLFPNEKLRAHHEWIDDHWGP 95
++GDKV+ + K W EG+++ L +GR F Y +++ +F KLR +WI+D W P
Sbjct: 25 RTGDKVEAF-WKQRWWEGYVSKDLGNGR-FRVYFTESKEMVFSKRKLRVRRQWINDKWVP 82
Query: 96 P-TQQPKKAEQELFRK 110
P Q K +ELFR+
Sbjct: 83 PIIYQQLKNYKELFRE 98
>Medtr7g017280.1 | agenet domain protein | HC | chr7:5475099-5477906
| 20130731
Length = 522
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 18 VSIDNLRPRPPLKPHHDFKSGDKVDTYNDKGSWLEGHITSTLSDGRSFVCYNDPNQKFLF 77
V I +RP P + K GD VD + +G W +G++ L G+ V + N K +F
Sbjct: 53 VRIHQIRPVPLPVGDFELKIGDDVDVFWKQG-WWKGYVKEDLGYGKFRVSVSGTNTK-VF 110
Query: 78 PNEKLRAHHEWIDDHWGPP--TQQPKK 102
EKLR H +WI D+W PP T+Q K
Sbjct: 111 SKEKLRVHRKWIVDNWVPPIITKQLKS 137
>Medtr3g065560.1 | agenet domain protein | LC |
chr3:29626838-29627278 | 20130731
Length = 146
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 27/142 (19%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
+R GD VEV +G+ ++F A++V G+ Y+VRYK+LL+++ LEE + ++
Sbjct: 10 YRVGDLVEVCIKDEGFWGSYFEAKIVACLENGE--YVVRYKNLLENDESGPLEETLLSKD 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKIIEVQNDNI 227
+RP+ P+ ++ A ++L +VD + GW KI
Sbjct: 68 LRPIPPSVQNPSA-------------------FQLNQKVDVFCNDGWWLGKITS------ 102
Query: 228 YKVFLKGDEQEKDNFDPITLRR 249
KVF + F I++RR
Sbjct: 103 KKVFRRNHYYIWVYFPTISIRR 124
>Medtr4g079830.1 | agenet domain protein | HC |
chr4:30897081-30897843 | 20130731
Length = 147
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
++ GD VEV S +G+ +++ A VV G+ Y+V+YK+LL ++ L E I
Sbjct: 10 YKIGDKVEVCSKEEGFFGSYYKARVVSRLQNGQ--YMVQYKNLLLEDKSGPLVETIYPYE 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDTWHIGDCDAKYKLGDRVDAWSLSGWRYAKIIEVQNDNI 227
+RP P R+ + L KVD +H D W + KII + +
Sbjct: 68 LRPTPPRVRN-PHEFQLNQKVDAFH-------------NDGWWVGQITSEKIITAEEGHC 113
Query: 228 YKVFLKGDEQEKDNFDPITLRRHYDWVDRKW 258
Y V+ E + + +R H++W +W
Sbjct: 114 YWVYF-STSSETNYYRYDQIRVHHEWFGGEW 143
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 1 MVEY--TYCEQGTNPRVEFVSIDNLRPRPP-LKPHHDFKSGDKVDTYNDKGSWLEGHITS 57
MV+Y E + P VE + LRP PP ++ H+F+ KVD +++ G W+ G ITS
Sbjct: 44 MVQYKNLLLEDKSGPLVETIYPYELRPTPPRVRNPHEFQLNQKVDAFHNDGWWV-GQITS 102
Query: 58 ----TLSDGRSF-VCYNDPNQKFLFPNEKLRAHHEWIDDHW 93
T +G + V ++ ++ + +++R HHEW W
Sbjct: 103 EKIITAEEGHCYWVYFSTSSETNYYRYDQIRVHHEWFGGEW 143
>Medtr5g089250.1 | agenet domain protein | HC |
chr5:38788620-38789060 | 20130731
Length = 146
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 108 FRKGDWVEVSSDVDGYLETWFLAEVVEVRVQGKFKYLVRYKHLLDDNSPKYLEEEIDAQH 167
++ GD VEV S +G++ ++F A +V GK Y++RYK+LL D+ + L E + +
Sbjct: 10 YKVGDKVEVCSKEEGFVGSYFEATIVSCLESGK--YVIRYKNLLKDDESELLMETLFPKD 67
Query: 168 IRPLAPNTRDGDAKLGLVGKVDT-----WHIGDCDAKYKLGDRVDAWSL 211
+RPL P + + L KVD W +G+ ++ L ++ +S+
Sbjct: 68 LRPLPPRVHN-PWRFELNQKVDVFDNDGWWVGEIASEKILMEKSYYYSV 115