Miyakogusa Predicted Gene

Lj2g3v0632440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0632440.1 tr|C1FGI8|C1FGI8_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_101999,47.5,1e-16,DNA_pol_E_B,DNA polymerase alpha/epsilon,
subunit B; seg,NULL; SUBFAMILY NOT NAMED,NULL; DNA
POLYMER,CUFF.34942.1
         (525 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g075170.1 | DNA polymerase epsilon subunit B | HC | chr6:2...   776   0.0  

>Medtr6g075170.1 | DNA polymerase epsilon subunit B | HC |
           chr6:27841824-27835098 | 20130731
          Length = 530

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/527 (74%), Positives = 432/527 (81%), Gaps = 5/527 (0%)

Query: 1   MNASTRKKVQKKCKIRGYNLKLEALDEILSYVSRFEGXXXXXXXXXXXXX-XEHESLNST 59
           MNAST+KK+QKKCKIRGYN+K EAL+EILS+V+RFE                E ESL S 
Sbjct: 1   MNASTKKKIQKKCKIRGYNIKPEALEEILSFVTRFESTQEEDEATDIVLDHLEQESLKSA 60

Query: 60  IIDKEPVHRVVTLLLKXXXXXXXXXXXXXXXXXXXXLRVVDAFLVSKFKYDAIRKQFYEH 119
           IID EPV RVV LLL                     + V+D F + ++KYD IR+ FY+H
Sbjct: 61  IIDVEPVQRVVNLLLAADGTEETNDMFASSSSSA--IGVIDVFDIPRYKYDPIRRNFYQH 118

Query: 120 PGSLPIHGDASAKAALYRDRFLLLFQRLSRDQNFSKPAFDSEFSHFGSCEISPIQSLVGR 179
           PGSLP  GD  AK+ALYRDRFLLL QRLSR Q+FS+PAF+SE S F SCEISPIQSLVGR
Sbjct: 119 PGSLPRLGDPPAKSALYRDRFLLLSQRLSRHQDFSRPAFESELSQFRSCEISPIQSLVGR 178

Query: 180 TGRRWVMGVISQLEDGHFYLEDLSASVEINLSNAKITTGFFSENTIVVVEGEMLVEGIFQ 239
            GRRWVMGVISQLEDGHFYLEDLSASVEINL++AKITTGFF ENTIVV EGEML EGIFQ
Sbjct: 179 KGRRWVMGVISQLEDGHFYLEDLSASVEINLTDAKITTGFFLENTIVVAEGEMLAEGIFQ 238

Query: 240 VLTCGFPPLEDRDKSLKTLAGHDFFGGGTFTKEETIRLVEMEKRAVNDMFVILSDVWLDN 299
           + TCGFPPLEDRD SL+ LAGHDFFGGGTFTKEETIR VEMEKRAVNDMFVILSD+WLD 
Sbjct: 239 IFTCGFPPLEDRDISLQVLAGHDFFGGGTFTKEETIRQVEMEKRAVNDMFVILSDIWLDK 298

Query: 300 DEALGKLGTVLDGFESVDVVPSLFVFMGNFSSHPCNLSFHSYSTLRLQFGKLGQMIAAHP 359
           +E  GKL  VLDGFESVDVVPSLFVFMG+F S  C+L+F++YS+LR QFGKLGQ+IAA P
Sbjct: 299 EETFGKLEIVLDGFESVDVVPSLFVFMGDFCSEKCSLAFNAYSSLRSQFGKLGQIIAARP 358

Query: 360 RLKEHSRFLFIPGPDDAGPSTVLPRCALPKYITEELQEHIPNAIFASNPCRIKFYTQEIV 419
           RLKE+ RFLFIPGP DAG ST LPRCALPKY+TEELQ +I  AIF+SNPCR+KFYTQEIV
Sbjct: 359 RLKENCRFLFIPGPGDAG-STALPRCALPKYLTEELQNYISGAIFSSNPCRVKFYTQEIV 417

Query: 420 FFRQDLLYRMRRSCLMPPSTEETDDPFQHLVATITHQSHLCPLPLT-VQPILWNYDHCLY 478
           FFRQD LY MRRSCL+PPS  ET DPFQHLVATITHQSHLCPLPLT  QPI+WNYDH L+
Sbjct: 418 FFRQDQLYNMRRSCLLPPSETETVDPFQHLVATITHQSHLCPLPLTKQQPIIWNYDHSLH 477

Query: 479 LYPTPHTIVLGDRSQQKAFKYTGITCFNPGSFSIDSTFVVYRPCSQE 525
           LYP PHTIVLGDRS QKAFKYTGITCFN GSFS+DSTFVVYRPCSQE
Sbjct: 478 LYPNPHTIVLGDRSPQKAFKYTGITCFNTGSFSMDSTFVVYRPCSQE 524