Miyakogusa Predicted Gene

Lj2g3v0621820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0621820.1 tr|D7KRJ0|D7KRJ0_ARALL RNA recognition
motif-containing protein OS=Arabidopsis lyrata subsp. lyrata
,82,4e-16,no description,Nucleotide-binding, alpha-beta plait; RRM,RNA
recognition motif domain; SUBFAMILY
NOT,NODE_48006_length_829_cov_50.727383.path2.1
         (61 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   108   7e-25
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    69   7e-13
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    61   2e-10
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    59   1e-09
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    58   2e-09
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    53   5e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    50   4e-07
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   1e-06
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    49   1e-06

>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr6:28646362-28643393 | 20130731
          Length = 183

 Score =  108 bits (271), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 54/56 (96%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQ 56
           MDK+ANRPRGFAFLRYATEEES+KAIEGMHGKFLDGRVIFVEVAKPRSELRQ  +Q
Sbjct: 128 MDKVANRPRGFAFLRYATEEESKKAIEGMHGKFLDGRVIFVEVAKPRSELRQGSKQ 183


>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr6:28646362-28643393 | 20130731
          Length = 169

 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 32/33 (96%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKF 33
           MDK+ANRPRGFAFLRYATEEES+KAIEGMHGK 
Sbjct: 128 MDKVANRPRGFAFLRYATEEESKKAIEGMHGKI 160


>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:40168782-40171275 | 20130731
          Length = 141

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
           D+ + R +GFAF+ Y+T EE++KA EGM+ KFLDG VIFV+ AKPR
Sbjct: 69  DRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR 114


>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr4:31628430-31625444 | 20130731
          Length = 144

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
           D+++   +GF F++YAT E++ K IEGM GKFL+G VIF E A+PR
Sbjct: 85  DRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLEGWVIFAEYARPR 130


>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           LC | chr4:31623161-31620622 | 20130731
          Length = 185

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 35/46 (76%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
           D+++   +GF ++RYAT E++ K I+GM GKFL+G ++F E A+PR
Sbjct: 78  DRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWIVFAEYARPR 123


>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr2:41240036-41242642 | 20130731
          Length = 89

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 35/46 (76%)

Query: 2  DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPR 47
          D+   RP+GF F+ Y +E E++KA + ++G+ +DGR+IFVE AKP+
Sbjct: 41 DQNTQRPKGFGFVSYKSEIEAEKARKALNGRIVDGRLIFVEHAKPK 86


>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:42674424-42676547 | 20130731
          Length = 140

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 38/48 (79%)

Query: 2   DKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSE 49
           D+++ + +G+ F+ +A+++E++KAI  M+ K L+GRV+FV+ AKP ++
Sbjct: 66  DRISEKSKGYGFVTFASQDEAEKAITEMNEKALNGRVVFVDYAKPDTK 113


>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:41816599-41813158 | 20130731
          Length = 284

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 34/45 (75%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAK 45
           +DK++ R +G+AF+ Y TEE +  A++ M+GK ++G +I V+VAK
Sbjct: 225 IDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 269


>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr3:9308768-9310458 | 20130731
          Length = 134

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 1   MDKLANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRFQQNT 58
           ++K   R +GF ++ +A EEE++KA  GM+GK L GRV++V++  P +E + + +Q T
Sbjct: 65  LNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYVDM-DPPNEQKNKIKQAT 121