Miyakogusa Predicted Gene

Lj2g3v0621780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0621780.1 CUFF.34898.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g089510.1 | cytochrome b6-F complex iron-sulfur subunit | ...    61   2e-10

>Medtr2g089510.1 | cytochrome b6-F complex iron-sulfur subunit | HC
           | chr2:37843606-37846116 | 20130731
          Length = 229

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/39 (76%), Positives = 34/39 (87%), Gaps = 2/39 (5%)

Query: 60  SGSATGGTIAKDAIGNYVFAE--LKTHGPGDRTLTQGLK 96
           SGS+TGGT+AKDA+GN V A   LK+HGPGDRTLTQGLK
Sbjct: 95  SGSSTGGTVAKDAVGNDVVAAEWLKSHGPGDRTLTQGLK 133