Miyakogusa Predicted Gene

Lj2g3v0621090.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0621090.1 Non Characterized Hit- tr|I1GTG3|I1GTG3_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,29.93,8e-19,DUF761,Protein of unknown function DUF761, plant;
DUF4408,Domain of unknown function DUF4408; coiled,CUFF.34842.1
         (301 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g080600.1 | DUF4408 domain protein | LC | chr6:28961475-28...   253   1e-67
Medtr6g080650.1 | DUF4408 domain protein | LC | chr6:29000923-29...   176   2e-44
Medtr2g080980.1 | cotton fiber | HC | chr2:33926026-33927663 | 2...    72   6e-13
Medtr2g012320.1 | DUF4408 domain protein | HC | chr2:3037095-303...    66   5e-11

>Medtr6g080600.1 | DUF4408 domain protein | LC |
           chr6:28961475-28963026 | 20130731
          Length = 316

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/331 (48%), Positives = 188/331 (56%), Gaps = 49/331 (14%)

Query: 1   MDLFHNPSSLKPNRFETAIWVSKLVIMSMGIASILVLLKVTIIPCTFDLVLSTLPRLWVS 60
           MDLF NPSS K +R ET I V+KLV++S+GI S L+L KV IIP TFDLVLSTLP+LW S
Sbjct: 1   MDLFQNPSSQKSSRMETPICVAKLVLISIGIISTLILFKVAIIPYTFDLVLSTLPQLWFS 60

Query: 61  ARSWLTLPFLYVIVNFIILTIAASSNFFPHKXXXXXXXXXXXXVLDTATYITXXXXXXXX 120
            R+W TLPFLY+IVNFII+ I ASS+F   K             ++              
Sbjct: 61  IRTWFTLPFLYIIVNFIIIIIVASSSFSDPKHTTTSILETTTNPIELENQTNEPHQEEKK 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXGVLNDSVFTFNKFITDDPSPENCTNDYFLPDSGD 180
                                      V+ DS    NKFIT DP PE C+ D++LPDS D
Sbjct: 121 VEEVEEQEQEEKR--------------VVKDSELFHNKFIT-DPIPEKCSKDFYLPDSDD 165

Query: 181 NDDD---------------------------------TLEATWRAIMEGQGKTMKPQLKK 207
              D                                 +LEATW+AIME Q KT KP LKK
Sbjct: 166 KVKDFRLFCNKFIDDPSPEKCCNDYNLPDSGDKGDDDSLEATWKAIMEAQEKTKKPHLKK 225

Query: 208 SDTWTARIVKAEPFXXXXXXXXXXXEDPVAWAQKELTKSDTFNDRASLRREKSMSPEELA 267
           S TWTARIVKAEPF           +DPVAWAQ+EL KS+TFNDRASL+REKSMSPEEL 
Sbjct: 226 SGTWTARIVKAEPF-RNNGGFCGGDDDPVAWAQRELKKSETFNDRASLKREKSMSPEELN 284

Query: 268 LRSEAFIKNFNNQMKLQRLESYQRFKEMVSR 298
            R+EAFIK FNNQMKLQR+ESY RF ++  R
Sbjct: 285 KRAEAFIKKFNNQMKLQRMESYHRFMKLNKR 315


>Medtr6g080650.1 | DUF4408 domain protein | LC |
           chr6:29000923-29003973 | 20130731
          Length = 331

 Score =  176 bits (447), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 113/146 (77%), Gaps = 3/146 (2%)

Query: 156 FNKFITDDPSPENCTNDYFLPDSGDNDDDT-LEATWRAIMEGQGKTMKPQLKKSDTWTAR 214
           FNKFITD P  E   NDY  PDSGD  DD  LEATW+AIMEGQ KT KP LKKSDTWTAR
Sbjct: 186 FNKFITD-PIQEKRCNDYNSPDSGDKGDDDSLEATWKAIMEGQEKTKKPYLKKSDTWTAR 244

Query: 215 IVKAEPFXXXXXXX-XXXXEDPVAWAQKELTKSDTFNDRASLRREKSMSPEELALRSEAF 273
           IVKAEPF            +DPVAWA++EL KS+TFNDRASL+REKSMSPEEL  R+EAF
Sbjct: 245 IVKAEPFRNNGGCGFGSGDDDPVAWAERELKKSETFNDRASLKREKSMSPEELNKRAEAF 304

Query: 274 IKNFNNQMKLQRLESYQRFKEMVSRG 299
           IK FNNQMKLQRLESYQRF ++V+ G
Sbjct: 305 IKKFNNQMKLQRLESYQRFLKLVNPG 330



 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 74/91 (81%), Gaps = 1/91 (1%)

Query: 1  MDLFHNPSSLKPNRFETAIWVSKLVIMSMGIASILVLLKVTIIPCTFDLVLSTLPRLWVS 60
          MDLF NPSSLK NR + ++ V+KLV+MS+GI S L+L KV IIP TFDLVLSTLP+LW S
Sbjct: 1  MDLFRNPSSLKSNRMDQSLGVAKLVLMSIGIISTLILFKVAIIPYTFDLVLSTLPQLWFS 60

Query: 61 ARSWLTLPFLYVIVNFIILTIAASSNFFPHK 91
           R+W T+PFLY+IVNFII+TI  SSN F HK
Sbjct: 61 IRTWFTIPFLYIIVNFIIITIVFSSN-FSHK 90


>Medtr2g080980.1 | cotton fiber | HC | chr2:33926026-33927663 |
           20130731
          Length = 338

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 183 DDTLEATWRAIMEGQGKTMKPQLKKSDTWTARIVKAEPFXXXXXXXXXXXEDPVAWAQKE 242
            +TLE+TW+ I EG+   +   LKKS+T+ ++  +                 PV      
Sbjct: 221 QETLESTWKTITEGRAMPLNRHLKKSETFESQPRRNGVPLADLNGGVGGGSGPV------ 274

Query: 243 LTKSDTFN----DRASLRREKSMSPEELALRSEAFIKNFNNQMKLQRLESYQRFKEMVSR 298
           + KSDTF+      + +R+E S+S +EL  R EAFI  FN +M+LQR ES ++++EMV+ 
Sbjct: 275 MKKSDTFSGMEKSTSPVRKEPSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYREMVNG 334

Query: 299 GRV 301
           GR 
Sbjct: 335 GRT 337


>Medtr2g012320.1 | DUF4408 domain protein | HC |
           chr2:3037095-3035610 | 20130731
          Length = 280

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 60/121 (49%), Gaps = 25/121 (20%)

Query: 184 DTLEATWRAIMEGQGKTMKPQLKKSDTWTARIVKAEPFXXXXXXXXXXXEDPVAWAQKEL 243
           +TLE TW+ I EG+   +   +KK DTW  R                  +DP    Q+E 
Sbjct: 176 ETLENTWKTITEGRSIPLSRHMKKCDTWQNRY----------------DDDP---HQQED 216

Query: 244 TKSDTFNDRA------SLRREKSMSPEELALRSEAFIKNFNNQMKLQRLESYQRFKEMVS 297
           + + + ND         LR+E S+S +EL  R EAFI+ FN QM+LQR ES   +  M++
Sbjct: 217 SSTVSVNDFNFNNKTWKLRKEPSLSQDELNKRVEAFIRKFNQQMRLQRQESLNHYMHMIN 276

Query: 298 R 298
            
Sbjct: 277 H 277