Miyakogusa Predicted Gene

Lj2g3v0592880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0592880.1 Non Characterized Hit- tr|B7FJ52|B7FJ52_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,86.53,0,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif dom,CUFF.34764.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC | chr4...   386   e-107
Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC | chr4...   383   e-107
Medtr7g108715.1 | small nuclear ribonucleoprotein | HC | chr7:44...   269   2e-72
Medtr4g084990.3 | U1 small nuclear ribonucleoprotein | HC | chr4...   211   4e-55
Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC | chr5...   207   7e-54
Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC | chr5...   205   2e-53
Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative...   171   4e-43
Medtr7g108725.1 | U1 small nuclear A-like ribonucleoprotein | HC...    96   3e-20
Medtr4g085040.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    94   9e-20
Medtr4g085000.1 | small nuclear ribonucleoprotein | HC | chr4:33...    85   6e-17
Medtr3g072860.1 | RNA recognition motif protein | HC | chr3:3279...    60   2e-09

>Medtr4g084990.2 | U1 small nuclear ribonucleoprotein | HC |
           chr4:33189422-33193785 | 20130731
          Length = 245

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/245 (77%), Positives = 198/245 (80%), Gaps = 4/245 (1%)

Query: 1   MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
           M E NA PE PQN TIY                 HAVFSQFGKILEV A KTLKHKGQAW
Sbjct: 1   MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           V+FED++SASNALRQMQGFPFYDKPMRIQY            GTFVPREKRKRH+DK  K
Sbjct: 61  VIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGK 120

Query: 121 KRKDQNDANLAGMGLNPAYPGAYGATP----IPYPGGLKSMVPEAPAPPNNILFIQNLPN 176
           KRKDQNDANLAG GLNPAY GAYGATP    IPYPGG KS++PEAPAPPNNILFIQNLPN
Sbjct: 121 KRKDQNDANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPN 180

Query: 177 ETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLI 236
           ETTPMMLQMLFLQYPGFKEVRMVE KPGIAFVEYGDEMQST+AMQALQGFKI PQNPMLI
Sbjct: 181 ETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLI 240

Query: 237 TYAKK 241
           TYAKK
Sbjct: 241 TYAKK 245


>Medtr4g084990.1 | U1 small nuclear ribonucleoprotein | HC |
           chr4:33189286-33193785 | 20130731
          Length = 244

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/245 (78%), Positives = 199/245 (81%), Gaps = 5/245 (2%)

Query: 1   MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
           M E NA PE PQN TIY                 HAVFSQFGKILEV A KTLKHKGQAW
Sbjct: 1   MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           V+FED++SASNALRQMQGFPFYDKPMRIQY            GTFVPREKRKRH+DKG K
Sbjct: 61  VIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKG-K 119

Query: 121 KRKDQNDANLAGMGLNPAYPGAYGATP----IPYPGGLKSMVPEAPAPPNNILFIQNLPN 176
           KRKDQNDANLAG GLNPAY GAYGATP    IPYPGG KS++PEAPAPPNNILFIQNLPN
Sbjct: 120 KRKDQNDANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPN 179

Query: 177 ETTPMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLI 236
           ETTPMMLQMLFLQYPGFKEVRMVE KPGIAFVEYGDEMQST+AMQALQGFKI PQNPMLI
Sbjct: 180 ETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLI 239

Query: 237 TYAKK 241
           TYAKK
Sbjct: 240 TYAKK 244


>Medtr7g108715.1 | small nuclear ribonucleoprotein | HC |
           chr7:44399841-44398655 | 20130731
          Length = 161

 Score =  269 bits (688), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/159 (83%), Positives = 136/159 (85%), Gaps = 4/159 (2%)

Query: 87  RIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKRKDQNDANLAGMGLNPAYPGAYGAT 146
           RIQY            GTFVPREKRKRH+DK  KKRKDQNDANLAG GLNPAY GAYGAT
Sbjct: 3   RIQYARTKSDVIAKADGTFVPREKRKRHDDKAGKKRKDQNDANLAGTGLNPAYAGAYGAT 62

Query: 147 P----IPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVETK 202
           P    IPYPGG KS++PEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVE K
Sbjct: 63  PALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAK 122

Query: 203 PGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           PGIAFVEYGDEMQSTVAMQALQGFKI PQNPMLITYAKK
Sbjct: 123 PGIAFVEYGDEMQSTVAMQALQGFKIAPQNPMLITYAKK 161


>Medtr4g084990.3 | U1 small nuclear ribonucleoprotein | HC |
           chr4:33189422-33193785 | 20130731
          Length = 186

 Score =  211 bits (538), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/147 (70%), Positives = 108/147 (73%), Gaps = 1/147 (0%)

Query: 1   MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
           M E NA PE PQN TIY                 HAVFSQFGKILEV A KTLKHKGQAW
Sbjct: 1   MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           V+FED++SASNALRQMQGFPFYDKPMRIQY            GTFVPREKRKRH+DKG K
Sbjct: 61  VIFEDVTSASNALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKG-K 119

Query: 121 KRKDQNDANLAGMGLNPAYPGAYGATP 147
           KRKDQNDANLAG GLNPAY GAYGATP
Sbjct: 120 KRKDQNDANLAGTGLNPAYAGAYGATP 146


>Medtr5g074430.1 | U1 small nuclear ribonucleoprotein | HC |
           chr5:31637698-31631234 | 20130731
          Length = 233

 Score =  207 bits (527), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 117/235 (49%), Positives = 153/235 (65%), Gaps = 8/235 (3%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N TIY                 + +FSQ+G+IL++ A KT K +GQAWV F ++++
Sbjct: 5   DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKR--KDQN 126
           ASNA+RQMQ FPFY+KPMRIQY            G+FVPREK+K+ E+K  KK+   +  
Sbjct: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124

Query: 127 DANLAGMGLNPAYPGAYGATPIPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQML 186
            + +   G + A  G   A+  P  G       +  A PNNILFI+NLP ETT  ML+ML
Sbjct: 125 QSAVPNGGTHGASNGGSTASFRPGSGA------QEAAAPNNILFIENLPYETTGRMLEML 178

Query: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           F QYPGFKEVR++E KPGIAFV++ D+ QS++AMQALQGFKITPQNPM+I +AKK
Sbjct: 179 FEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233


>Medtr5g074430.2 | U1 small nuclear ribonucleoprotein | HC |
           chr5:31637698-31631271 | 20130731
          Length = 234

 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/235 (51%), Positives = 156/235 (66%), Gaps = 7/235 (2%)

Query: 9   ETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAWVVFEDLSS 68
           + P N TIY                 + +FSQ+G+IL++ A KT K +GQAWV F ++++
Sbjct: 5   DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64

Query: 69  ASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNKKR--KDQN 126
           ASNA+RQMQ FPFY+KPMRIQY            G+FVPREK+K+ E+K  KK+   +  
Sbjct: 65  ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124

Query: 127 DANLAGMGLNPAYPGAYGATPIPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQML 186
            + +   G + A  G  G+T   +  G  S   EA AP NNILFI+NLP ETT  ML+ML
Sbjct: 125 QSAVPNGGTHGASNG--GSTQASFRPG--SGAQEAAAP-NNILFIENLPYETTGRMLEML 179

Query: 187 FLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 241
           F QYPGFKEVR++E KPGIAFV++ D+ QS++AMQALQGFKITPQNPM+I +AKK
Sbjct: 180 FEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 234


>Medtr1g055405.1 | U2 small nuclear ribonucleoprotein B, putative |
           LC | chr1:24534556-24533368 | 20130731
          Length = 279

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/182 (56%), Positives = 128/182 (70%), Gaps = 6/182 (3%)

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPREKRKRHEDKGNK 120
           V F ++++ASNA+RQMQ FPFY KPMRIQY            G+FVPREK+K+ E+K  K
Sbjct: 103 VCFSEVTAASNAVRQMQNFPFYVKPMRIQYTKTKSDCVSKEEGSFVPREKKKKQEEKAEK 162

Query: 121 KR-KDQNDANLAGMGLNPAYPGAYGATPIPYPGGLKSMVPEAPAPPNNILFIQNLPNETT 179
           K   D++  +    G + A  G  G+T   +  G  S   EA AP NNILFI+NLP ETT
Sbjct: 163 KWYADESKQSAVPNGTHGASNG--GSTQASFCPG--SGAQEAAAP-NNILFIENLPYETT 217

Query: 180 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYA 239
             ML+MLF QYPGFKEVR++E KPGIAFV++ DE QS++AMQALQGFKITPQNPM+I +A
Sbjct: 218 GRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEGQSSMAMQALQGFKITPQNPMIINFA 277

Query: 240 KK 241
           KK
Sbjct: 278 KK 279


>Medtr7g108725.1 | U1 small nuclear A-like ribonucleoprotein | HC
          | chr7:44402147-44401062 | 20130731
          Length = 95

 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 50/75 (66%)

Query: 1  MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
          M E NA PE PQN TIY                 HAVFSQFGKILEV A KTLKHKGQAW
Sbjct: 1  MAEVNANPEPPQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 61 VVFEDLSSASNALRQ 75
          V+FED++SASNALR 
Sbjct: 61 VIFEDVTSASNALRH 75


>Medtr4g085040.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | LC | chr4:33227987-33226801 | 20130731
          Length = 160

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 50/78 (64%)

Query: 1  MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
          M E NA PE  QN TIY                 HAVFSQF KILEV A KTL HKGQAW
Sbjct: 1  MDEVNANPEPAQNMTIYINNLNEKIKIDELKKSLHAVFSQFKKILEVLAFKTLIHKGQAW 60

Query: 61 VVFEDLSSASNALRQMQG 78
          V+FED++SASNALRQMQ 
Sbjct: 61 VIFEDVTSASNALRQMQA 78


>Medtr4g085000.1 | small nuclear ribonucleoprotein | HC |
          chr4:33195873-33197281 | 20130731
          Length = 75

 Score = 85.1 bits (209), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 44/68 (64%)

Query: 1  MTEANAGPETPQNNTIYXXXXXXXXXXXXXXXXXHAVFSQFGKILEVFAAKTLKHKGQAW 60
          M E NA PE PQN TIY                 HAVFSQFGKILEV A KTLKHKGQAW
Sbjct: 1  MAEVNANPELPQNMTIYINNLNEKIKIDELKRSLHAVFSQFGKILEVLAFKTLKHKGQAW 60

Query: 61 VVFEDLSS 68
          V+FED++S
Sbjct: 61 VIFEDVTS 68


>Medtr3g072860.1 | RNA recognition motif protein | HC |
           chr3:32792380-32791534 | 20130731
          Length = 151

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 61  VVFEDLSSASNALRQMQGFPFYDKPMRIQYXXXXXXXXXXXXGTFVPR 108
           V F ++++ASNA+RQMQ FPFY KPMRIQY            G+FVPR
Sbjct: 73  VCFSEVTAASNAVRQMQNFPFYVKPMRIQYAKTKSDCVAKEEGSFVPR 120