Miyakogusa Predicted Gene

Lj2g3v0561310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561310.1 tr|K1PKH8|K1PKH8_CRAGI UPF0415 protein
C7orf25-like protein (Fragment) OS=Crassostrea gigas PE=4
SV=,39.5,5e-19,DUF1308,Protein of unknown function DUF1308;
UNCHARACTERIZED DUF1308,Protein of unknown function DUF,CUFF.34726.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g068920.1 | DUF1308 family protein | HC | chr6:24768282-24...   233   3e-62
Medtr6g068920.3 | DUF1308 family protein | HC | chr6:24768282-24...   111   1e-25
Medtr6g068920.2 | DUF1308 family protein | HC | chr6:24768282-24...   109   6e-25
Medtr6g471100.1 | pentatricopeptide (PPR) repeat protein | LC | ...    80   5e-16

>Medtr6g068920.1 | DUF1308 family protein | HC |
           chr6:24768282-24773470 | 20130731
          Length = 511

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/123 (89%), Positives = 116/123 (94%)

Query: 1   MSELQNPIHVEFSRILCGKNGIICESVLTEFKELVLMCGGPNEKLRADKLINCLRVVPDD 60
           MSELQNPIHVEF ++LCGK GIICESVL+EFKELVLMCGGPNEKLRADKLINCLRVV D 
Sbjct: 389 MSELQNPIHVEFGKVLCGKLGIICESVLSEFKELVLMCGGPNEKLRADKLINCLRVVSDT 448

Query: 61  PSDRMMGLPTTRKLALKNKVVFGTGDQWHAPTLTANMAFARAVSQTGMSLSTIEHRPRAL 120
           PS+RMMGLPTTRKLALKNKVVFGTGD + APTLTANMAF RAVSQTGMSLS+IEHRPRAL
Sbjct: 449 PSERMMGLPTTRKLALKNKVVFGTGDYYRAPTLTANMAFVRAVSQTGMSLSSIEHRPRAL 508

Query: 121 TGD 123
           TGD
Sbjct: 509 TGD 511


>Medtr6g068920.3 | DUF1308 family protein | HC |
           chr6:24768282-24772044 | 20130731
          Length = 443

 Score =  111 bits (278), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 1   MSELQNPIHVEFSRILCGKNGIICESVLTEFKELVLMCGGPNEKLRADKLINCLR 55
           MSELQNPIHVEF ++LCGK GIICESVL+EFKELVLMCGGPNEKLRADKLINCLR
Sbjct: 389 MSELQNPIHVEFGKVLCGKLGIICESVLSEFKELVLMCGGPNEKLRADKLINCLR 443


>Medtr6g068920.2 | DUF1308 family protein | HC |
           chr6:24768282-24773466 | 20130731
          Length = 445

 Score =  109 bits (272), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/56 (87%), Positives = 53/56 (94%)

Query: 1   MSELQNPIHVEFSRILCGKNGIICESVLTEFKELVLMCGGPNEKLRADKLINCLRV 56
           MSELQNPIHVEF ++LCGK GIICESVL+EFKELVLMCGGPNEKLRADKLINCL +
Sbjct: 389 MSELQNPIHVEFGKVLCGKLGIICESVLSEFKELVLMCGGPNEKLRADKLINCLSL 444


>Medtr6g471100.1 | pentatricopeptide (PPR) repeat protein | LC |
           chr6:25449369-25454062 | 20130731
          Length = 742

 Score = 79.7 bits (195), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/54 (74%), Positives = 44/54 (81%), Gaps = 1/54 (1%)

Query: 3   ELQNPIHVEFSRILCGKNGIICESVLTEFKELVLMCGGPNEKLRADKLINCLRV 56
           ELQ PIH+EF R+L GKNGII E VL+E K LVLM GGPNEKL ADKLINC R+
Sbjct: 651 ELQYPIHLEFGRVLYGKNGIISEGVLSECK-LVLMRGGPNEKLGADKLINCRRL 703