Miyakogusa Predicted Gene

Lj2g3v0561150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0561150.1 Non Characterized Hit- tr|H9X176|H9X176_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,89.55,1e-17,seg,NULL; coiled-coil,NULL,CUFF.34720.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g068990.2 | hypothetical protein | HC | chr6:24807670-2480...   158   1e-39
Medtr6g068990.3 | hypothetical protein | HC | chr6:24807308-2480...   122   1e-28
Medtr6g068990.1 | hypothetical protein | HC | chr6:24807367-2480...    79   2e-15
Medtr6g068990.4 | hypothetical protein | HC | chr6:24807668-2480...    70   6e-13

>Medtr6g068990.2 | hypothetical protein | HC |
           chr6:24807670-24802605 | 20130731
          Length = 221

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 86/130 (66%)

Query: 1   MAGREVREYTNLSXXXXXXXXXXXXXXXXXXVTFQRMVAKMQEVAGERGGYLHGRGALDS 60
           MAGREVREYTNL+                  VTFQRMVAKMQEVAGERGGYLHGRGALDS
Sbjct: 1   MAGREVREYTNLTDPKDKKLGKGKDKIDDEDVTFQRMVAKMQEVAGERGGYLHGRGALDS 60

Query: 61  DDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDSSPASVPLPLRVEPKPKSGIR 120
           DDLLYLKEQM                         SL DSSPASVPLPLRVEPKPKSGIR
Sbjct: 61  DDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKRAASLADSSPASVPLPLRVEPKPKSGIR 120

Query: 121 QQDLLKKVVE 130
           QQDLLKKVVE
Sbjct: 121 QQDLLKKVVE 130


>Medtr6g068990.3 | hypothetical protein | HC |
           chr6:24807308-24802656 | 20130731
          Length = 181

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 64/90 (71%)

Query: 41  MQEVAGERGGYLHGRGALDSDDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXXXXXSLVDS 100
           MQEVAGERGGYLHGRGALDSDDLLYLKEQM                         SL DS
Sbjct: 1   MQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKRAASLADS 60

Query: 101 SPASVPLPLRVEPKPKSGIRQQDLLKKVVE 130
           SPASVPLPLRVEPKPKSGIRQQDLLKKVVE
Sbjct: 61  SPASVPLPLRVEPKPKSGIRQQDLLKKVVE 90


>Medtr6g068990.1 | hypothetical protein | HC |
           chr6:24807367-24803005 | 20130731
          Length = 227

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 56  GALDSDDLLYLKEQMXXXXXXXXXXXXXXXXXXXXXX----------------XXXSLVD 99
            ALDSDDLLYLKEQM                                         SL D
Sbjct: 46  AALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKISFYLHFLSVDNSPIYRAASLAD 105

Query: 100 SSPASVPLPLRVEPKPKSGIRQQDLLKKVVE 130
           SSPASVPLPLRVEPKPKSGIRQQDLLKKVVE
Sbjct: 106 SSPASVPLPLRVEPKPKSGIRQQDLLKKVVE 136


>Medtr6g068990.4 | hypothetical protein | HC |
           chr6:24807668-24802649 | 20130731
          Length = 152

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/35 (97%), Positives = 34/35 (97%)

Query: 96  SLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVE 130
           SL DSSPASVPLPLRVEPKPKSGIRQQDLLKKVVE
Sbjct: 27  SLADSSPASVPLPLRVEPKPKSGIRQQDLLKKVVE 61