Miyakogusa Predicted Gene

Lj2g3v0550010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0550010.1 Non Characterized Hit- tr|A5B9J7|A5B9J7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,49.09,2e-16,no
description,NULL; zinc finger,Zinc finger, CCCH-type; seg,NULL;
zf-CCCH,Zinc finger, CCCH-type;
C,NODE_51858_length_774_cov_72.377258.path2.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g465150.1 | zinc finger CCCH domain protein | HC | chr6:23...   155   1e-38

>Medtr6g465150.1 | zinc finger CCCH domain protein | HC |
           chr6:23065003-23059765 | 20130731
          Length = 438

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/146 (56%), Positives = 98/146 (67%), Gaps = 6/146 (4%)

Query: 1   MDVDGGSKRVYHRLGGP-GGDARNQKVCFYWQAGKCDRHPCPYLHSEVVPPHSNSNGTSS 59
           MD DGG+KRVY+RLGG  GGD++NQKVCF WQAGKC+R+PCP+LHSE+  P SN NG  S
Sbjct: 1   MDFDGGNKRVYNRLGGSNGGDSKNQKVCFQWQAGKCNRYPCPFLHSEL--PTSNGNGAPS 58

Query: 60  KRPHGYADNSSFSGPRRS-QNFSTWXXXXXXXXXXXXXXXXXXXXXXXXXXXKADKVCNY 118
           KR   YADNSSFSG RR   +F++W                             ++VC Y
Sbjct: 59  KR--AYADNSSFSGNRRGGSSFNSWGPGRGGGRGRGGGRGGVGGGGGRGVVVNVERVCTY 116

Query: 119 WAQGSCSYGERCKFLHSWSLGDGFSL 144
           W QGSCSYG+RCKFLHSW++GDGFSL
Sbjct: 117 WIQGSCSYGDRCKFLHSWNVGDGFSL 142