Miyakogusa Predicted Gene

Lj2g3v0533560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0533560.1 Non Characterized Hit- tr|A9P0S0|A9P0S0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.78,5e-18,RNA-binding domain, RBD,NULL; RRM_1,RNA recognition
motif domain; no description,Nucleotide-binding,,CUFF.34681.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g038225.1 | homeobox transcription factor | HC | chr5:1671...   272   1e-73
Medtr5g038225.2 | homeobox transcription factor | HC | chr5:1671...   218   2e-57

>Medtr5g038225.1 | homeobox transcription factor | HC |
           chr5:16718253-16716063 | 20130731
          Length = 185

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/185 (73%), Positives = 148/185 (80%)

Query: 1   MSRKRDRPNVSRQASKXXXXXXXXXXXXXXXXXXXXXXALVVMGLPIDCSVLDLKSRFEI 60
           MSRKR+ P+ SR   K                      A+V+MGLP+DCSVLDLKSRFEI
Sbjct: 1   MSRKRENPSFSRHDFKRRRPLPPPPEEDKPTKRPTPPSAVVIMGLPLDCSVLDLKSRFEI 60

Query: 61  YGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVNSKKVQVLWATDPLAMWRE 120
           YG+ISRIRIDRDAVGYITYR+KDSADAAIAAG DPSFG+TVNSKKVQVLWATDPLAMWRE
Sbjct: 61  YGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGVTVNSKKVQVLWATDPLAMWRE 120

Query: 121 GVGNNKDKSSMSKLVRAEVPLRRHGRGNRLASSIGNTKSIQDRLGTSVLEAPFRGREIVA 180
           GVG NKD  SMSKLVRAE PLRRHGRGNRLAS+IG TKS +D  G+SVLE PF+GREIVA
Sbjct: 121 GVGKNKDNVSMSKLVRAEAPLRRHGRGNRLASAIGKTKSSEDGSGSSVLEVPFKGREIVA 180

Query: 181 YDDIL 185
           YDDIL
Sbjct: 181 YDDIL 185


>Medtr5g038225.2 | homeobox transcription factor | HC |
           chr5:16718253-16715459 | 20130731
          Length = 182

 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 116/151 (76%)

Query: 1   MSRKRDRPNVSRQASKXXXXXXXXXXXXXXXXXXXXXXALVVMGLPIDCSVLDLKSRFEI 60
           MSRKR+ P+ SR   K                      A+V+MGLP+DCSVLDLKSRFEI
Sbjct: 1   MSRKRENPSFSRHDFKRRRPLPPPPEEDKPTKRPTPPSAVVIMGLPLDCSVLDLKSRFEI 60

Query: 61  YGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVNSKKVQVLWATDPLAMWRE 120
           YG+ISRIRIDRDAVGYITYR+KDSADAAIAAG DPSFG+TVNSKKVQVLWATDPLAMWRE
Sbjct: 61  YGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGVTVNSKKVQVLWATDPLAMWRE 120

Query: 121 GVGNNKDKSSMSKLVRAEVPLRRHGRGNRLA 151
           GVG NKD  SMSKLVRAE PLRRHGRGN   
Sbjct: 121 GVGKNKDNVSMSKLVRAEAPLRRHGRGNSFC 151