Miyakogusa Predicted Gene

Lj2g3v0521160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0521160.1 tr|F0SFV6|F0SFV6_PLABD Class I peptide chain
release factor OS=Planctomyces brasiliensis (strain
ATC,36.47,1e-18,PEPTIDYL-TRNA HYDROLASE DOMAIN PROTEIN,NULL; PEPTIDE
CHAIN RELEASE FACTOR,NULL; RF-1,Peptide chain r,CUFF.34649.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g059330.1 | class I peptide chain release factor | HC | ch...   263   2e-70
Medtr7g112100.1 | peptide chain release factor 2 | HC | chr7:460...    55   6e-08
Medtr7g110570.2 | peptide chain release factor 1 | HC | chr7:453...    52   1e-06
Medtr7g110570.1 | peptide chain release factor 1 | HC | chr7:453...    51   1e-06

>Medtr6g059330.1 | class I peptide chain release factor | HC |
           chr6:20369783-20372756 | 20130731
          Length = 250

 Score =  263 bits (671), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 139/171 (81%)

Query: 144 GYLELTDDELMRQCEMGTFKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKNXX 203
           GYL+LTDD+LMRQCEMGTFK+SGPGGQHRNKRES+VR+KHLPTG+IAQA EDRSQH N  
Sbjct: 68  GYLDLTDDDLMRQCEMGTFKTSGPGGQHRNKRESAVRLKHLPTGIIAQAGEDRSQHMNRA 127

Query: 204 XXXXXXXXXXXXKVRKTVDLDAYSPPRELLQILPPKSSIRGSDIGSQIGPNNSKFAMGMQ 263
                       KVRKTVDLDAYSPPRELLQILPPKSSIRGSDIGSQIGPNN KFAMGMQ
Sbjct: 128 SAIKRLRSLIALKVRKTVDLDAYSPPRELLQILPPKSSIRGSDIGSQIGPNNPKFAMGMQ 187

Query: 264 ALLDLIFAVEGSISEAAKYLGLSTGAXXXXXXXXXXXXMEVNSLRASKGMK 314
           ALLDLIFAV+GS+S+AAKYLGLSTGA             EVN LRASK ++
Sbjct: 188 ALLDLIFAVDGSVSDAAKYLGLSTGALSRLILSDDSLRKEVNDLRASKRIR 238


>Medtr7g112100.1 | peptide chain release factor 2 | HC |
           chr7:46081007-46085393 | 20130731
          Length = 475

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 162 FKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKN 201
           F++SG GGQH N  ES+V+I H+PTGV A    +RSQH+N
Sbjct: 346 FRASGAGGQHVNTTESAVKITHIPTGVTATCQNERSQHQN 385


>Medtr7g110570.2 | peptide chain release factor 1 | HC |
           chr7:45310948-45315157 | 20130731
          Length = 403

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 29/40 (72%)

Query: 162 FKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKN 201
           ++S G GGQH NK  S+VR+ H+PTG++    ++RSQH N
Sbjct: 269 YRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMN 308


>Medtr7g110570.1 | peptide chain release factor 1 | HC |
           chr7:45311012-45315116 | 20130731
          Length = 438

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 29/40 (72%)

Query: 162 FKSSGPGGQHRNKRESSVRIKHLPTGVIAQASEDRSQHKN 201
           ++S G GGQH NK  S+VR+ H+PTG++    ++RSQH N
Sbjct: 275 YRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMN 314