Miyakogusa Predicted Gene
- Lj2g3v0510100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0510100.1 tr|Q0JA54|Q0JA54_ORYSJ Os04g0615500 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os04g06155,34.82,0.000000000003,APO1 (ACCUMULATION OF PHOTOSYSTEM
ONE 1),NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1,NULL;
A,CUFF.34647.1
(440 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g059930.1 | APO RNA-binding protein | HC | chr6:20583169-2... 686 0.0
Medtr6g059930.2 | APO RNA-binding protein | HC | chr6:20582557-2... 679 0.0
Medtr2g088390.1 | APO RNA-binding protein | HC | chr2:37254350-3... 320 1e-87
Medtr2g067610.1 | APO RNA-binding protein | HC | chr2:28298590-2... 319 4e-87
Medtr5g072520.1 | APO RNA-binding protein | HC | chr5:30879261-3... 243 2e-64
Medtr2g088750.1 | APO RNA-binding protein | HC | chr2:37418951-3... 216 3e-56
Medtr1g054885.1 | photosystem one accumulation protein | HC | ch... 86 5e-17
>Medtr6g059930.1 | APO RNA-binding protein | HC |
chr6:20583169-20579100 | 20130731
Length = 451
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/425 (76%), Positives = 360/425 (84%)
Query: 15 HNRVFPCMEFMGSHLSASKSYAPALKFNCQHFHKVGSTLPGVILCANRKFRGDEAVWKRE 74
H VF CMEFMG HLSAS SY+P KF CQ F K S LPGVILC NRK R DE VW+R
Sbjct: 26 HFCVFYCMEFMGCHLSASNSYSPTFKFKCQQFDKCRSALPGVILCGNRKLRPDEFVWRRN 85
Query: 75 QLTQNVDXXXXXXXXXXXXXXXXXXXXXHAARTDWKLAHMGIEKPLEPPKNGLLVPDLVP 134
+ TQNVD HAA+ + KLA GIEKPLEPPKNGLLVPDLVP
Sbjct: 86 ESTQNVDFPPKLPKGKKKPYPIPFKQIKHAAKMERKLASKGIEKPLEPPKNGLLVPDLVP 145
Query: 135 VAYGVFDAWKLLIKGLSQLLHVIPAHGCSECSEVHVAPIGHCILDCEGPTSSQRHSSHAW 194
VAY VFDAWKLLIKGLSQLLHVIPA+GCSECSEVHVA GH ILDCEG TSS RHSSHAW
Sbjct: 146 VAYEVFDAWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAW 205
Query: 195 VKGSINDILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTN 254
V+G++NDILVPIESYHLFDPFG+RI H TRFEYDRIPAVVELCIQAGVDIPEYPSRRRTN
Sbjct: 206 VRGNVNDILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTN 265
Query: 255 PVRILGRKILDRGGHIEEPKPWRSAESSSLLDFDTYRVCERFPRPSLADLPKIAEETLYA 314
P+R++GR++LDRGGH+EEPKP R+AE SS++DFDTYR CERFP P L+D+PKIA+ET+ A
Sbjct: 266 PIRMVGRRVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPPPLSDVPKIAQETIDA 325
Query: 315 YETVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEV 374
Y+TVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCG+FKHQWRDGKHGWQDAT+DEV
Sbjct: 326 YQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEV 385
Query: 375 FPPNYVWHVRDPSGPPLRSSLKRYYGKTPAVVEVCMQAGAKISDEYKPMMRLDIVIPDSD 434
PPNYVWHVRD +GPP++++LKRYYGK PAVVEVC+QAGA+I EYKP+MRLDIVIPD+D
Sbjct: 386 LPPNYVWHVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTD 445
Query: 435 ETRMI 439
E MI
Sbjct: 446 EAGMI 450
>Medtr6g059930.2 | APO RNA-binding protein | HC |
chr6:20582557-20579088 | 20130731
Length = 419
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/418 (76%), Positives = 356/418 (85%)
Query: 22 MEFMGSHLSASKSYAPALKFNCQHFHKVGSTLPGVILCANRKFRGDEAVWKREQLTQNVD 81
MEFMG HLSAS SY+P KF CQ F K S LPGVILC NRK R DE VW+R + TQNVD
Sbjct: 1 MEFMGCHLSASNSYSPTFKFKCQQFDKCRSALPGVILCGNRKLRPDEFVWRRNESTQNVD 60
Query: 82 XXXXXXXXXXXXXXXXXXXXXHAARTDWKLAHMGIEKPLEPPKNGLLVPDLVPVAYGVFD 141
HAA+ + KLA GIEKPLEPPKNGLLVPDLVPVAY VFD
Sbjct: 61 FPPKLPKGKKKPYPIPFKQIKHAAKMERKLASKGIEKPLEPPKNGLLVPDLVPVAYEVFD 120
Query: 142 AWKLLIKGLSQLLHVIPAHGCSECSEVHVAPIGHCILDCEGPTSSQRHSSHAWVKGSIND 201
AWKLLIKGLSQLLHVIPA+GCSECSEVHVA GH ILDCEG TSS RHSSHAWV+G++ND
Sbjct: 121 AWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVND 180
Query: 202 ILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPVRILGR 261
ILVPIESYHLFDPFG+RI H TRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNP+R++GR
Sbjct: 181 ILVPIESYHLFDPFGKRIMHDTRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPIRMVGR 240
Query: 262 KILDRGGHIEEPKPWRSAESSSLLDFDTYRVCERFPRPSLADLPKIAEETLYAYETVRKG 321
++LDRGGH+EEPKP R+AE SS++DFDTYR CERFP P L+D+PKIA+ET+ AY+TVRKG
Sbjct: 241 RVLDRGGHLEEPKPLRTAEFSSVIDFDTYRACERFPPPPLSDVPKIAQETIDAYQTVRKG 300
Query: 322 VRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVW 381
VRKLMKKYTVKACGYCSEVHVGPWGHNAKLCG+FKHQWRDGKHGWQDAT+DEV PPNYVW
Sbjct: 301 VRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATLDEVLPPNYVW 360
Query: 382 HVRDPSGPPLRSSLKRYYGKTPAVVEVCMQAGAKISDEYKPMMRLDIVIPDSDETRMI 439
HVRD +GPP++++LKRYYGK PAVVEVC+QAGA+I EYKP+MRLDIVIPD+DE MI
Sbjct: 361 HVRDTNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMRLDIVIPDTDEAGMI 418
>Medtr2g088390.1 | APO RNA-binding protein | HC |
chr2:37254350-37249092 | 20130731
Length = 447
Score = 320 bits (821), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 157/338 (46%), Positives = 216/338 (63%), Gaps = 31/338 (9%)
Query: 118 KPLEPPKNGLLVPDLVPVAYGVFDAWKLLIKGLSQLLHVIPAHGCSECSEVHVAPIGHCI 177
KP+ PKNGLLV +L+P AY V++A LI L +LL V+P H C CSE+HV P+GH
Sbjct: 126 KPMPAPKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPF 185
Query: 178 LDCEGPTSSQRHSSHAWVKGSINDILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELC 237
C+G S+ R H W + DIL+PI+++HL+D G+RI H+ RF RIPAVVELC
Sbjct: 186 KSCKGTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELC 245
Query: 238 IQAGVDIPEYPSRRRTNPVRILGRKILDRGGHIEEPKPWRSAESSSLLDFDTYRVCERFP 297
IQAGV I E+P++RR P+ +G+K + A+ S L D V +
Sbjct: 246 IQAGVKIREFPTKRRRKPIIRIGKK------------EFVDADESELPD----EVPDNPT 289
Query: 298 RPSLADLPK--------------IAEETLYAYETVRKGVRKLMKKYTVKACGYCSEVHVG 343
+P +A++P +AEETL A+E +RKG ++LM+ Y V+ CGYC E+HVG
Sbjct: 290 QPLIAEIPDSDIVAPVNKEEVVHLAEETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVG 349
Query: 344 PWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPSGPPLRSSLKRYYGKTP 403
P GH A+ CGA KHQ R+G+HGWQ A +D++ PP +VWHV D +GPPL LK +YG+ P
Sbjct: 350 PSGHKAQNCGAHKHQQRNGQHGWQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAP 409
Query: 404 AVVEVCMQAGAKISDEYKPMMRLDIVIPDS-DETRMII 440
AVVE+C+QAGA + ++YK MRLD+ IP + E M++
Sbjct: 410 AVVEMCIQAGAALPEQYKSTMRLDVGIPSTLREAEMVV 447
>Medtr2g067610.1 | APO RNA-binding protein | HC |
chr2:28298590-28300383 | 20130731
Length = 329
Score = 319 bits (817), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/338 (46%), Positives = 216/338 (63%), Gaps = 31/338 (9%)
Query: 118 KPLEPPKNGLLVPDLVPVAYGVFDAWKLLIKGLSQLLHVIPAHGCSECSEVHVAPIGHCI 177
KP+ PKNGLLV +L+P AY V++A LI L +LL V+P H C CSE+HV P+GH
Sbjct: 8 KPMPAPKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPF 67
Query: 178 LDCEGPTSSQRHSSHAWVKGSINDILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELC 237
C+G S+ R H W + DIL+PI+++HL+D G+RI H+ RF RIPAVVELC
Sbjct: 68 KSCKGTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELC 127
Query: 238 IQAGVDIPEYPSRRRTNPVRILGRKILDRGGHIEEPKPWRSAESSSLLDFDTYRVCERFP 297
IQAGV I E+P++RR P+ +G+K + A+ S L D V +
Sbjct: 128 IQAGVKIREFPTKRRRKPIIRIGKK------------EFVDADESELPD----EVPDNPT 171
Query: 298 RPSLADLPK--------------IAEETLYAYETVRKGVRKLMKKYTVKACGYCSEVHVG 343
+P +A++P +AEETL A+E +RKG ++LM+ Y V+ CGYC E+HVG
Sbjct: 172 QPLIAEIPDSDIVAPVNKEEVVHLAEETLQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVG 231
Query: 344 PWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPSGPPLRSSLKRYYGKTP 403
P GH A+ CGA KHQ R+G+HGWQ A +D++ PP +VWHV D +GPPL LK +YG+ P
Sbjct: 232 PSGHKAQNCGAHKHQQRNGQHGWQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAP 291
Query: 404 AVVEVCMQAGAKISDEYKPMMRLDIVIPDS-DETRMII 440
AVVE+C+QAGA + ++YK MRLD+ IP + E M++
Sbjct: 292 AVVEMCIQAGAALPEQYKSTMRLDVGIPSTLREAEMVV 329
>Medtr5g072520.1 | APO RNA-binding protein | HC |
chr5:30879261-30876789 | 20130731
Length = 442
Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/296 (40%), Positives = 184/296 (62%), Gaps = 20/296 (6%)
Query: 165 CSEVHVAPIGHCILDCEGPTSSQRHSSHAWVKGSINDILVPIESYHLFDPFGR-RIKHQT 223
C+EVH+ +GH I C GP S R ++H W +G + D++ + +HL+D G+ R+ H
Sbjct: 2 CNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHDE 61
Query: 224 RFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPVRILGRKILDRGGHIEEPKPWRSA--ES 281
RF RIPA++ELCIQAG+D+ ++P++RRT PV + +I D E+ + R++ E+
Sbjct: 62 RFSVPRIPAIIELCIQAGLDLKKFPTKRRTKPVYCIEGRIADFESVAEDNEIERNSSFEN 121
Query: 282 SSLLDFDTYRVCERFPR------------PSLAD-----LPKIAEETLYAYETVRKGVRK 324
+ L +Y + E + L+D L +++ L ++ + G +K
Sbjct: 122 VNPLTDSSYMLKEPVEKVQSLLENKISHMDQLSDEERNKLRDLSKHALDSWFEMISGAKK 181
Query: 325 LMKKYTVKACGYCSEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVR 384
+M+KY V CGYC EV VGP GH ++C A KHQ R+G H WQ+AT+D++ PN+VWHV
Sbjct: 182 IMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGPNFVWHVE 241
Query: 385 DPSGPPLRSSLKRYYGKTPAVVEVCMQAGAKISDEYKPMMRLDIVIPDSDETRMII 440
D +GP L +++KRYYGK PAVVE+C+ AGA + D+YK MMRLD+V P+ DE ++
Sbjct: 242 DLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVVSPERDEVDLVF 297
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 140 FDAWKLLIKGLSQLLHVIPAHGCSECSEVHVAPIGHCILDCEGPTSSQRHSSHAWVKGSI 199
D+W +I G +++ + C C EV V P GH + C+ R+ HAW + ++
Sbjct: 169 LDSWFEMISGAKKIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATL 228
Query: 200 NDILVPIESYHLFDPFGRRIKHQTRFEYDRIPAVVELCIQAGVDIP-EYPSRRRTNPV 256
+DI+ P +H+ D G + + + Y + PAVVELC+ AG +P +Y S R + V
Sbjct: 229 DDIVGPNFVWHVEDLNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVV 286
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 336 YCSEVHVGPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPSGPPLRSSL 395
+C+EVH+G GH + C K R H W+ V +V +H+ D G P
Sbjct: 1 FCNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHD 60
Query: 396 KRY-YGKTPAVVEVCMQAG 413
+R+ + PA++E+C+QAG
Sbjct: 61 ERFSVPRIPAIIELCIQAG 79
>Medtr2g088750.1 | APO RNA-binding protein | HC |
chr2:37418951-37422309 | 20130731
Length = 344
Score = 216 bits (551), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/325 (37%), Positives = 172/325 (52%), Gaps = 29/325 (8%)
Query: 103 HAARTDWKLAHMGIEKPLEPPKNGLLVPDLVPVAYGVFDAWKLLIKGLSQLLHVIPAHGC 162
+A + D + I K +E V ++PVA V A +LI G+S L++ P C
Sbjct: 29 YATKVDLRKLRPMILKRIERRSQLYPVRAMIPVANEVLLARNVLIHGVSTLINSFPLMAC 88
Query: 163 SECSEVHVAPIGHCILDCEGPTSSQRHSSHAWVKGSINDILVPIESYHLFDPFGRRIKHQ 222
C E+++ GH I C G ++ H WVKG +NDILVP+E++HL + F I+H
Sbjct: 89 KFCPEIYIGEQGHLIPTCRGYKRRAKNRVHEWVKGGLNDILVPVETFHLNNMFQNVIRHD 148
Query: 223 TRFEYDRIPAVVELCIQAGVDIPEYPSRRRTNPVRILGRKILDRGGHIEEPKPWRSAESS 282
RF++DRI AVVELC QAG D+P H E P SS
Sbjct: 149 QRFDFDRIAAVVELCWQAGADVP-----------------------HDENLSP-----SS 180
Query: 283 SLLDFDTYRVCERFPRPSLADLPKIAEETLYAYETVRKGVRKLMKKYTVKACGYCSEVHV 342
S L+ V + F S L +A++TL A++ +R GV KL+ Y VK C YCSEVHV
Sbjct: 181 SNLEAANGNV-DGFESLSPNVLAVVAKKTLEAWDVLRSGVEKLLLVYPVKVCKYCSEVHV 239
Query: 343 GPWGHNAKLCGAFKHQWRDGKHGWQDATVDEVFPPNYVWHVRDPSGPPLRSSLKRYYGKT 402
GP GH A+LCG FKH+ G H W A VD + PP VW R P L + + +YG+
Sbjct: 240 GPSGHKARLCGVFKHESWKGAHFWTKANVDNLVPPKIVWRRRPQDPPVLVNEGRDFYGRV 299
Query: 403 PAVVEVCMQAGAKISDEYKPMMRLD 427
PAV+++C +AG + +Y +M++
Sbjct: 300 PAVLDLCTKAGVIVPAKYNVLMKVQ 324
>Medtr1g054885.1 | photosystem one accumulation protein | HC |
chr1:24065884-24068179 | 20130731
Length = 82
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Query: 360 RDGKHGWQDATVDEVFPPNYVWHVRDPS-GPPLRSSLKRYYGKTPAVVEVCMQAGAKISD 418
RDG+H WQ+AT+++ PP YV+H+RD G PL + LKRYYG PAVVE+ QAGA +
Sbjct: 2 RDGQHEWQEATINDFVPPVYVYHIRDQQPGKPLVNELKRYYGMLPAVVELFSQAGAPVEK 61
Query: 419 EYKPMMRLDIVIPDSDETRMII 440
Y MR D+V+PD DE + ++
Sbjct: 62 IYGHTMR-DVVVPDMDEEKWVV 82