Miyakogusa Predicted Gene
- Lj2g3v0486970.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0486970.2 Non Characterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,91.09,0,seg,NULL; CPSF_A,Cleavage/polyadenylation specificity
factor, A subunit, C-terminal; MMS1_N,NULL; CL,CUFF.34661.2
(1100 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr6g461810.1 | cleavage and polyadenylation specificity facto... 1966 0.0
Medtr8g089380.1 | damaged DNA-binding protein 1A | HC | chr8:371... 92 2e-18
Medtr4g115810.1 | splicing factor 3B subunit-like protein | HC |... 69 2e-11
Medtr1g115525.1 | splicing factor 3B subunit-like protein | HC |... 69 2e-11
Medtr6g013290.1 | splicing factor 3B subunit 3 | HC | chr6:41894... 66 2e-10
Medtr4g115500.1 | splicing factor 3B subunit-like protein | HC |... 65 4e-10
>Medtr6g461810.1 | cleavage and polyadenylation specificity factor
subunit 1 | HC | chr6:21540099-21517843 | 20130731
Length = 1448
Score = 1966 bits (5092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1100 (86%), Positives = 1007/1100 (91%), Gaps = 3/1100 (0%)
Query: 1 MPRSFFNVELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSG 60
MPRS FNVELDAANATWL NDVA I+DGRVVQRLDLSKSKASVLSSG
Sbjct: 352 MPRSSFNVELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSG 411
Query: 61 ITTIGNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDS 120
+TTIGNS+FFLASRLGDSMLVQFSCGS VSMLSSNLKEEVGD + DASS KRLRRSPSD+
Sbjct: 412 VTTIGNSMFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDYDVDASSAKRLRRSPSDT 471
Query: 121 LHDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIA 180
L DMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLIN+GPLKDFSYGLRINADANATGIA
Sbjct: 472 LQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIA 531
Query: 181 KQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKL 240
KQSNYELVCCSGHGKNGSLCVLRQSI PEVITEVELPGCKGIWTVYHKS RS +DSSKL
Sbjct: 532 KQSNYELVCCSGHGKNGSLCVLRQSICPEVITEVELPGCKGIWTVYHKSTRSLNADSSKL 591
Query: 241 ADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYE 300
D+DEYHAYLIISLE+RTMVLETAD+LSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYE
Sbjct: 592 --DEDEYHAYLIISLESRTMVLETADVLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYE 649
Query: 301 RGARILDGSFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPS 360
RGARILDGSFMTQD+ ALALSVSIADPY+LLRMSDGS+RLLVGDPS
Sbjct: 650 RGARILDGSFMTQDVSFGASNSESNYGSESALALSVSIADPYILLRMSDGSVRLLVGDPS 709
Query: 361 TCTISVTXXXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQD 420
TC ISVT CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGA QD
Sbjct: 710 TCNISVTSPTSFESSKGPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQD 769
Query: 421 HGDIYCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDA 480
HGD+YCVVCYENGNLEIFDVPNFSCVFSVENF+SGKSHLVD LTKEV KDSQKGDK SD
Sbjct: 770 HGDVYCVVCYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDVLTKEVPKDSQKGDKVSDG 829
Query: 481 VANQGRKENVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVED 540
V +Q RK+ LNMKVVELAMQRWSG+HSRPFLFGILSDGT LCYHAYLYESPDGTSKVED
Sbjct: 830 VVSQDRKD-ALNMKVVELAMQRWSGKHSRPFLFGILSDGTTLCYHAYLYESPDGTSKVED 888
Query: 541 SVSASGPVDLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLS 600
SVSA GP L++TSVSRLRNLRFVR+PLD + REETSNGSP Q I IFKNIGS+EGFFL
Sbjct: 889 SVSAGGPGGLTNTSVSRLRNLRFVRVPLDVHAREETSNGSPCQQINIFKNIGSHEGFFLL 948
Query: 601 GSRPAWVMVLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQGVLKICQLPTGSNY 660
GSRPAWVMVLRERLRVHPQLCDGSI+AFTVLHN+NCNHGLIYVTSQGVLKICQLP+GSNY
Sbjct: 949 GSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQGVLKICQLPSGSNY 1008
Query: 661 DSHWPVQKVPLKATPHQVTYFAEKNLYPLIVSFPVLKPLSQVVSLVDPDANHQTENPNLN 720
D WPVQKVPLKATPHQVTYFAEKNLYP+IVSFPVLKPL+QV++LVDPDAN+ TEN NLN
Sbjct: 1009 DCFWPVQKVPLKATPHQVTYFAEKNLYPIIVSFPVLKPLNQVIALVDPDANNLTENQNLN 1068
Query: 721 SDEQNRFYTVDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETL 780
SD+QN FY+++EFEVRIMEPEKSGGPWQTKATIPMQSSENALTV+MVTL+NT+SKENETL
Sbjct: 1069 SDDQNHFYSIEEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLMNTSSKENETL 1128
Query: 781 LAVGTAYVQGEDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIA 840
LA+GTAYVQGEDVAARGRILLF+LGKNTDNPQ LVSEVYSKE KG +SA+A+LQGHLL+A
Sbjct: 1129 LAIGTAYVQGEDVAARGRILLFTLGKNTDNPQTLVSEVYSKELKGAISAMAALQGHLLVA 1188
Query: 841 SGPKITLHKWTGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLN 900
SGPKI LHKWTGTEL G+AFFD PPLHVVSLNIVKNFILIGD+HKSIYFLSWKEQG+QL+
Sbjct: 1189 SGPKIILHKWTGTELNGVAFFDVPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGSQLS 1248
Query: 901 LLAKDFGSLNCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHV 960
LLAKDFGSL+CFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKM ESWKGQKLLSRAEFHV
Sbjct: 1249 LLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMLESWKGQKLLSRAEFHV 1308
Query: 961 GAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQ 1020
GAHVTKFLRLQMLSTSDRTG+ PGSDKTNRFALLF TLDGSIGCIAPLDEITFRRLQSLQ
Sbjct: 1309 GAHVTKFLRLQMLSTSDRTGSAPGSDKTNRFALLFSTLDGSIGCIAPLDEITFRRLQSLQ 1368
Query: 1021 RKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHLIG 1080
+KL+DAV HVAGLNPRAFR F+SNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAH +G
Sbjct: 1369 KKLIDAVSHVAGLNPRAFRLFHSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVG 1428
Query: 1081 TTRSQILTNLSDLSLGTSFL 1100
TTRSQIL+NL+DLSLGTSFL
Sbjct: 1429 TTRSQILSNLNDLSLGTSFL 1448
>Medtr8g089380.1 | damaged DNA-binding protein 1A | HC |
chr8:37153843-37142364 | 20130731
Length = 1089
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 132/281 (46%), Gaps = 26/281 (9%)
Query: 774 SKENETLLAVGTAYV-QGEDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALAS 832
S +N VGTAYV E+ +GRIL+FS+ + LV+E KE+KG V L +
Sbjct: 778 SDDNNVYYCVGTAYVLPEENEPTKGRILVFSV---EEGKLQLVAE---KETKGAVYCLNA 831
Query: 833 LQGHLLIASGPKITLHKWT----GT-ELTGIAFFDAPPLHVVSLNIVK--NFILIGDVHK 885
G LL A KI L+KW GT EL H+++L + +FI++GD+ K
Sbjct: 832 FNGKLLAAINQKIQLYKWVLREDGTRELQSECGHHG---HILALYVQTRGDFIVVGDLMK 888
Query: 886 SIYFLSWKEQGAQLNLLAKDFGSLNCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSE 945
SI L +K + + A+D+ + A E L D L +++ N+ + +
Sbjct: 889 SISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLG---AENSFNLFTVRKNSEGAT 945
Query: 946 SWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCI 1005
+ +L E+H+G + +F ++ P SD ++FGT++G IG I
Sbjct: 946 DEERGRLEVAGEYHLGEFINRFRHGSLVMRL------PDSDVGQIPTVIFGTINGVIGVI 999
Query: 1006 APLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGK 1046
A L + L+ LQ L + V GL+ +R FN+ K
Sbjct: 1000 ASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKK 1040
>Medtr4g115810.1 | splicing factor 3B subunit-like protein | HC |
chr4:47855052-47860569 | 20130731
Length = 1225
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 165/382 (43%), Gaps = 58/382 (15%)
Query: 735 VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVA 794
+R+++P T + +Q +E A ++ VN KE TLLAVGTA +G
Sbjct: 874 IRVLDPRTG----NTTCLLELQENEAAFSI---CTVNFHDKEYGTLLAVGTA--KGLQFT 924
Query: 795 ARGRILL--FSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKWTG 852
+ + + + + D+ ++L ++ + +G AL QG LL GP + L+
Sbjct: 925 PKRSLTVGFIHIYRFLDDGRSL-ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGK 983
Query: 853 TELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSLNCF 912
L + P+ +VS++ ++ I +GD+ +S ++ ++ QL + A D
Sbjct: 984 RRLLRKCENKSFPISIVSIHAYRDRIYVGDIQESFHYCKYRRDENQLYIFADD-SVPRWL 1042
Query: 913 ATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSE-----------SWKGQKL---LSRAE- 957
+ ID T++ +D NI +S+ W+ KL L++ E
Sbjct: 1043 TASYHIDFDTMA--GADKFGNIFFARLPQDVSDEVEEDPTSGKIKWEQGKLNGALNKVEE 1100
Query: 958 ---FHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---DEI 1011
FHVG +T + ++ PG + +++GT+ G +G + D++
Sbjct: 1101 IVQFHVGDVITSLQKAALV---------PGGGE----CIVYGTVMGCVGALHAFTSRDDV 1147
Query: 1012 TFRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEE 1071
F L+ + P + G + A+R A+ P D ++D +L + LP++
Sbjct: 1148 DF--FSHLEMHMRQDNPPLCGRDHMAYR------SAYFPVKD-VLDGDLCEQFPTLPMDL 1198
Query: 1072 QLEIAHLIGTTRSQILTNLSDL 1093
Q +IA + T +IL L +L
Sbjct: 1199 QRKIADELDRTPGEILKKLEEL 1220
>Medtr1g115525.1 | splicing factor 3B subunit-like protein | HC |
chr1:52208212-52213176 | 20130731
Length = 1190
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 160/376 (42%), Gaps = 46/376 (12%)
Query: 735 VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVA 794
+RI++P K+G T + +Q +E A +V VN KE TLLAVGTA +G
Sbjct: 839 IRILDP-KTG---NTTCLLELQDNEAAFSV---CTVNFHDKEYGTLLAVGTA--KGLQFT 889
Query: 795 AR-----GRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHK 849
R G I ++ ++ + + L + + +G AL+ QG LL GP + +
Sbjct: 890 PRRSLTAGFIHIYRFLEDGSSLELL----HKTQVEGVPLALSQFQGRLLAGIGPVLRFYD 945
Query: 850 WTGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSL 909
L P +VS+ ++ I +GD+ +S ++ ++ QL + A D
Sbjct: 946 LGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVP- 1004
Query: 910 NCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGA------- 962
+ ID T++ +D NI +S+ + R ++ G
Sbjct: 1005 RWLTASYHIDFDTMA--GADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGAPNK 1062
Query: 963 --HVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---DEITFRRLQ 1017
+ +F ++S + PG + +L+GT+ GSIG + D++ F
Sbjct: 1063 VEEIVQFHVGDVISCLQKASLIPGGGE----CILYGTVMGSIGALHAFTSRDDVDF--FS 1116
Query: 1018 SLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAH 1077
L+ + P + G + A+R A+ P D ++D +L + LP++ Q +IA
Sbjct: 1117 HLEMHMRQDNPPLCGRDHMAYRS------AYFPVKD-VIDGDLCEQFPTLPMDLQRKIAD 1169
Query: 1078 LIGTTRSQILTNLSDL 1093
+ T +IL L ++
Sbjct: 1170 ELDRTPGEILKKLEEV 1185
>Medtr6g013290.1 | splicing factor 3B subunit 3 | HC |
chr6:4189472-4192971 | 20130731
Length = 702
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 160/369 (43%), Gaps = 47/369 (12%)
Query: 735 VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTAYVQGEDVA 794
+RI++P K+G T + +Q +E A + VN KE TLL VGTA +G
Sbjct: 372 IRILDP-KTG---NTTCLLELQDNEAAFSG---CTVNFHDKEYGTLLDVGTA--KGLQFT 422
Query: 795 AR-----GRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHK 849
R G I ++ ++ + + L + + +G AL+ QG LL GP + +
Sbjct: 423 PRRSLTAGFIHIYRFLEDGRSLELL----HKTQVEGVPLALSQFQGRLLAGIGPVLRFYD 478
Query: 850 WTGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSL 909
L P +VS+ ++ I +GD +S ++ ++ QL + A D
Sbjct: 479 LGKRRLLRKYENKLFPNTIVSIQTYRDRIYVGDTQESFHYCKYRWDENQLYIFADDCVP- 537
Query: 910 NCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 969
+ ID T++ + +D +I + K++ + K+ +FHVG ++ +
Sbjct: 538 RWLTASYHIDFDTMA-GIEEDPTGGRIKWEQGKLNGA--PNKVEEIVQFHVGDVISCLQK 594
Query: 970 LQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---DEITFRRLQSLQRKLVDA 1026
++ PG + +L GT+ GSIG + D++ F L+ +
Sbjct: 595 ASLI---------PGGGE----CILNGTVMGSIGALHAFTSRDDVDF--FSHLEMHMRQD 639
Query: 1027 VPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHLIGTTRSQI 1086
P + G + A+R A+ P D ++D +L + LP++ Q +IA + TR +I
Sbjct: 640 NPPLCGRDHMAYR------SAYFPVKD-VIDGDLCEQFPTLPMDLQRKIADELDRTRGEI 692
Query: 1087 LTNLSDLSL 1095
L L + +
Sbjct: 693 LKKLEEYKI 701
>Medtr4g115500.1 | splicing factor 3B subunit-like protein | HC |
chr4:47719322-47713420 | 20130731
Length = 1225
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 87/384 (22%), Positives = 162/384 (42%), Gaps = 62/384 (16%)
Query: 735 VRIMEPEKSGGPWQTKATIPMQSSENALTVKMVTLVNTTSKENETLLAVGTA----YVQG 790
+R+++P T + +Q +E A ++ VN KE TLLAVGTA +
Sbjct: 874 IRVLDPRTG----NTTCLLELQENEAAFSI---CTVNFHDKEYGTLLAVGTAKGLQFTPK 926
Query: 791 EDVAARGRILLFSLGKNTDNPQNLVSEVYSKESKGDVSALASLQGHLLIASGPKITLHKW 850
+ A G I ++ D+ ++L ++ + +G AL QG LL GP + L+
Sbjct: 927 RSLTA-GFIHIYRF---LDDGRSL-ELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDL 981
Query: 851 TGTELTGIAFFDAPPLHVVSLNIVKNFILIGDVHKSIYFLSWKEQGAQLNLLAKDFGSLN 910
L + P +VS++ ++ I +G + +S ++ ++ QL + A D
Sbjct: 982 GKRRLLRKCENKSFPSSIVSIHAYRDRIYVGGIQESFHYCKYRRDENQLYIFADD-SVPR 1040
Query: 911 CFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSE-----------SWKGQKLLSR---- 955
+ + ID T++ +D NI +S+ W+ KL
Sbjct: 1041 WLTSSYHIDFDTMA--GADKFGNIFFARLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKV 1098
Query: 956 ---AEFHVGAHVTKFLRLQMLSTSDRTGAGPGSDKTNRFALLFGTLDGSIGCIAPL---D 1009
+FHVG +T + ++ PG + +++GT+ GS+G + D
Sbjct: 1099 EEIVQFHVGDVITSLQKASLV---------PGGGE----CIVYGTVMGSVGALHAFTSRD 1145
Query: 1010 EITFRRLQSLQRKLVDAVPHVAGLNPRAFRQFNSNGKAHRPGPDSIVDCELLCHYEMLPL 1069
++ F L+ + P + G + A+R A+ P D ++D +L + LP+
Sbjct: 1146 DVDF--FSHLEMHMRQDNPPLCGRDHMAYRS------AYFPVKD-VIDGDLCEQFPTLPM 1196
Query: 1070 EEQLEIAHLIGTTRSQILTNLSDL 1093
+ Q +IA + T +IL L ++
Sbjct: 1197 DLQRKIADELDRTPGEILKKLEEV 1220