Miyakogusa Predicted Gene

Lj2g3v0486970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0486970.1 Non Characterized Hit- tr|I1MQ84|I1MQ84_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26345
PE,88.52,0,MMS1_N,NULL; seg,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR SUBUNIT 1 (CLEAVAGE AND POLYA,CUFF.34661.1
         (999 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g461810.1 | cleavage and polyadenylation specificity facto...  1682   0.0  

>Medtr6g461810.1 | cleavage and polyadenylation specificity factor
           subunit 1 | HC | chr6:21540099-21517843 | 20130731
          Length = 1448

 Score = 1682 bits (4357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 824/998 (82%), Positives = 877/998 (87%), Gaps = 4/998 (0%)

Query: 1   MSFAAYKMMQWPTGVEHCASGFLTHSRADLASHTIIXXXXXXXXXXXXXXXRHPSPLPNL 60
           MSFAAYKMMQ PTG+++CASG+LTHSR+D     I                R  +  PNL
Sbjct: 1   MSFAAYKMMQHPTGIDNCASGYLTHSRSDFTPR-IPPPDSDDLDASDWAPQRDVATFPNL 59

Query: 61  VVTAANVLEVYIVRLQDRHPSKPSSARGTLLDGISGASLELVCHYRLHGNVKSMAVLSIG 120
           VVTAANVLEVY+VR+Q        +A   +LDG++GA+LELVCHYRLHGNV+S+AVLS+G
Sbjct: 60  VVTAANVLEVYVVRIQHDVAKGKLNADSRVLDGVNGANLELVCHYRLHGNVESVAVLSVG 119

Query: 121 GGDTSKRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPV 180
           GGD S+RRDS+ILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPV
Sbjct: 120 GGDASRRRDSVILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPV 179

Query: 181 VKVDPQGRCGGVLVYDLQMIILKTTQAGSGLVGEDDPLGSGGAVAARIDSSYMINLRDLD 240
            KVDPQGRCGGVLVYDLQMIILKT+QAGSGLVGEDD  GSGGAVAAR+DSSY+INLRDLD
Sbjct: 180 AKVDPQGRCGGVLVYDLQMIILKTSQAGSGLVGEDDVSGSGGAVAARVDSSYLINLRDLD 239

Query: 241 MRHVKDFTFVHGYIEPVMVILHERELSWAGRVAWKHHTCMISALSISTTLKQHPLIWSAV 300
           MRHVKDFTF+HGYIEPVMVILHE EL+WAGRV+WKHHTC ISALSISTTLKQHPLIWSA+
Sbjct: 240 MRHVKDFTFLHGYIEPVMVILHEHELTWAGRVSWKHHTCTISALSISTTLKQHPLIWSAI 299

Query: 301 NLPHDAYKLIAVPSPIGGVLVIAANTIHYHSQSASCALALNSYAVSLDSSQEMPRSFFNV 360
           NLPHDAYKL+AVPSPIGGVLVI ANTIHYHSQSASCAL+LNSYAV LD+SQEMPRS FNV
Sbjct: 300 NLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALSLNSYAVPLDNSQEMPRSSFNV 359

Query: 361 ELDAANATWLSNDVAXXXXXXXXXXXXXXIFDGRVVQRLDLSKSKASVLSSGITTIGNSL 420
           ELDAANATWL NDVA              I+DGRVVQRLDLSKSKASVLSSG+TTIGNS+
Sbjct: 360 ELDAANATWLLNDVALLSTKTGELLLLTLIYDGRVVQRLDLSKSKASVLSSGVTTIGNSM 419

Query: 421 FFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEGDASSTKRLRRSPSDSLHDMVSGE 480
           FFLASRLGDSMLVQFSCGS VSMLSSNLKEEVGD + DASS KRLRRSPSD+L DMVSGE
Sbjct: 420 FFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDYDVDASSAKRLRRSPSDTLQDMVSGE 479

Query: 481 ELSLYGSAPNRTESAQKSFSFAVRDSLINIGPLKDFSYGLRINADANATGIAKQSNYELV 540
           ELSLYGSAPNRTESAQKSFSFAVRDSLIN+GPLKDFSYGLRINADANATGIAKQSNYELV
Sbjct: 480 ELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELV 539

Query: 541 CCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSARSHISDSSKLADDDDEYH 600
           CCSGHGKNGSLCVLRQSI PEVITEVELPGCKGIWTVYHKS RS  +DSSKL  D+DEYH
Sbjct: 540 CCSGHGKNGSLCVLRQSICPEVITEVELPGCKGIWTVYHKSTRSLNADSSKL--DEDEYH 597

Query: 601 AYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDG 660
           AYLIISLE+RTMVLETAD+LSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDG
Sbjct: 598 AYLIISLESRTMVLETADVLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDG 657

Query: 661 SFMTQDIXXXXXXXXXXXXXXXALALSVSIADPYVLLRMSDGSIRLLVGDPSTCTISVTX 720
           SFMTQD+               ALALSVSIADPY+LLRMSDGS+RLLVGDPSTC ISVT 
Sbjct: 658 SFMTQDVSFGASNSESNYGSESALALSVSIADPYILLRMSDGSVRLLVGDPSTCNISVTS 717

Query: 721 XXXXXXXXXXXXXCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAPQDHGDIYCVV 780
                        CTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGA QDHGD+YCVV
Sbjct: 718 PTSFESSKGPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAVQDHGDVYCVV 777

Query: 781 CYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALTKEVAKDSQKGDKGSDAVANQGRKE 840
           CYENGNLEIFDVPNFSCVFSVENF+SGKSHLVD LTKEV KDSQKGDK SD V +Q RK+
Sbjct: 778 CYENGNLEIFDVPNFSCVFSVENFLSGKSHLVDVLTKEVPKDSQKGDKVSDGVVSQDRKD 837

Query: 841 NVLNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSASGPV 900
             LNMKVVELAMQRWSG+HSRPFLFGILSDGT LCYHAYLYESPDGTSKVEDSVSA GP 
Sbjct: 838 -ALNMKVVELAMQRWSGKHSRPFLFGILSDGTTLCYHAYLYESPDGTSKVEDSVSAGGPG 896

Query: 901 DLSSTSVSRLRNLRFVRLPLDAYPREETSNGSPGQHITIFKNIGSYEGFFLSGSRPAWVM 960
            L++TSVSRLRNLRFVR+PLD + REETSNGSP Q I IFKNIGS+EGFFL GSRPAWVM
Sbjct: 897 GLTNTSVSRLRNLRFVRVPLDVHAREETSNGSPCQQINIFKNIGSHEGFFLLGSRPAWVM 956

Query: 961 VLRERLRVHPQLCDGSILAFTVLHNVNCNHGLIYVTSQ 998
           VLRERLRVHPQLCDGSI+AFTVLHN+NCNHGLIYVTSQ
Sbjct: 957 VLRERLRVHPQLCDGSIVAFTVLHNINCNHGLIYVTSQ 994