Miyakogusa Predicted Gene
- Lj2g3v0486960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0486960.1 Non Characterized Hit- tr|C0PJ22|C0PJ22_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,64.29,0.0000000000005,Clp_N,Clp, N-terminal; no
description,Double Clp-N motif; Double Clp-N motif,NULL; seg,NULL;
SUBFAMI,CUFF.34634.1
(256 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g011550.1 | ATP-dependent Clp protease | HC | chr5:3358350... 216 1e-56
Medtr5g011550.2 | ATP-dependent Clp protease | HC | chr5:3358350... 166 1e-41
Medtr6g461650.1 | ATP-dependent Clp protease | HC | chr6:2136810... 146 2e-35
Medtr3g498725.2 | ATP-dependent Clp protease ATP-binding subunit... 56 3e-08
Medtr3g498725.1 | ATP-dependent Clp protease ATP-binding subunit... 56 3e-08
Medtr3g498725.3 | ATP-dependent Clp protease ATP-binding subunit... 56 3e-08
Medtr8g100040.1 | ATP-dependent Clp protease ATP-binding subunit... 56 3e-08
Medtr3g102830.1 | ATP-dependent Clp protease ATP-binding subunit... 54 1e-07
Medtr3g461000.1 | ATP-dependent Clp protease ATP-binding subunit... 50 2e-06
>Medtr5g011550.1 | ATP-dependent Clp protease | HC |
chr5:3358350-3355170 | 20130731
Length = 233
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 148/198 (74%), Gaps = 2/198 (1%)
Query: 49 CTLPLTSLFGTRITL-HRPASSRSLHLNTNCRATSATVSFSLPTPKPQPDAP-EKVPKWS 106
T P S GT+I + H S +S + R +ATVSFSLPT P+ +P +++PKWS
Sbjct: 28 ITNPNNSWLGTKIRVQHCSVSVKSSVSVFHRRPLAATVSFSLPTSNPERVSPGQEIPKWS 87
Query: 107 ARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVEL 166
+++IKSFAM +EARKLK+ TTGTEAL+MGIL+EGT+ A+KFLRANGITLFKVRDE V++
Sbjct: 88 SKAIKSFAMSAIEARKLKFTTTGTEALIMGILIEGTNLASKFLRANGITLFKVRDEIVKI 147
Query: 167 LGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQI 226
LG+ D + +PE PP+T+ A++ALDWA+D KLKS GE+ AH++LGIWS +S G +I
Sbjct: 148 LGEVDPFTETPERPPMTDDAQRALDWAVDRKLKSVDGGEVTTAHIILGIWSDVDSPGHKI 207
Query: 227 LAGLGFNDEKAKELAKSV 244
L+ LG NDEKAKEL S+
Sbjct: 208 LSKLGINDEKAKELEASI 225
>Medtr5g011550.2 | ATP-dependent Clp protease | HC |
chr5:3358350-3355324 | 20130731
Length = 205
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/153 (57%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 50 TLPLTSLFGTRITL-HRPASSRSLHLNTNCRATSATVSFSLPTPKPQPDAP-EKVPKWSA 107
T P S GT+I + H S +S + R +ATVSFSLPT P+ +P +++PKWS+
Sbjct: 29 TNPNNSWLGTKIRVQHCSVSVKSSVSVFHRRPLAATVSFSLPTSNPERVSPGQEIPKWSS 88
Query: 108 RSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVELL 167
++IKSFAM +EARKLK+ TTGTEAL+MGIL+EGT+ A+KFLRANGITLFKVRDE V++L
Sbjct: 89 KAIKSFAMSAIEARKLKFTTTGTEALIMGILIEGTNLASKFLRANGITLFKVRDEIVKIL 148
Query: 168 GKSDMYFFSPEHPPLTEPARKALDWAIDEKLKS 200
G+ D + +PE PP+T+ A++ALDWA+D KLKS
Sbjct: 149 GEVDPFTETPERPPMTDDAQRALDWAVDRKLKS 181
>Medtr6g461650.1 | ATP-dependent Clp protease | HC |
chr6:21368108-21371073 | 20130731
Length = 126
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 93/116 (80%), Gaps = 2/116 (1%)
Query: 142 TSKAAKFLRANGITLFKVRDETVELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
TSKAAKFLRANGIT KVR++T+E+LGKS + SP LTEP KALDWA++E KS
Sbjct: 12 TSKAAKFLRANGITYLKVREQTLEILGKSYWSYSSPVVLSLTEPLHKALDWALNETSKS- 70
Query: 202 GEGEINVAHLLLGIWSQKESAGQQILAGLGFNDEKAKELAKS-VDGDIDLSYRRTA 256
GEGE NV HLLLGIWSQ+ESAG+++L+ LGFND+KAKE+A++ GDID ++++ A
Sbjct: 71 GEGETNVTHLLLGIWSQEESAGRKVLSALGFNDQKAKEIAETAASGDIDWNFKKQA 126
>Medtr3g498725.2 | ATP-dependent Clp protease ATP-binding subunit |
HC | chr3:45109477-45116986 | 20130731
Length = 922
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AAK L++ GI L R E
Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 154 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 189
>Medtr3g498725.1 | ATP-dependent Clp protease ATP-binding subunit |
HC | chr3:45109729-45116929 | 20130731
Length = 922
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AAK L++ GI L R E
Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 154 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 189
>Medtr3g498725.3 | ATP-dependent Clp protease ATP-binding subunit |
HC | chr3:45109881-45116929 | 20130731
Length = 922
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AAK L++ GI L R E
Sbjct: 94 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 153
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 154 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 189
>Medtr8g100040.1 | ATP-dependent Clp protease ATP-binding subunit |
HC | chr8:40241178-40246683 | 20130731
Length = 926
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AAK L++ GI L R E
Sbjct: 98 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEV 157
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 158 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 193
>Medtr3g102830.1 | ATP-dependent Clp protease ATP-binding subunit |
HC | chr3:47377876-47383774 | 20130731
Length = 927
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 104 KWSARSIKSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDET 163
+++ ++IK + + EAR+L + GTE +L+G++ EGT AK L++ GI L R E
Sbjct: 99 RFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIGAKVLKSMGINLKDSRVEV 158
Query: 164 VELLGKSDMYFFSPEHPPLTEPARKALDWAIDEKLKSG 201
+++G+ F P T A++ L+ +++E + G
Sbjct: 159 EKIIGRGSG--FVAVEIPFTPRAKRVLELSLEEARQLG 194
>Medtr3g461000.1 | ATP-dependent Clp protease ATP-binding subunit,
putative | HC | chr3:24065055-24068423 | 20130731
Length = 810
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 111 KSFAMGELEARKLKYPTTGTEALLMGILVEGTSKAAKFLRANGITLFKVRDETVELLGK- 169
K + EAR + + TE +L+GIL + AAK L++ GI R++ ++L+G+
Sbjct: 11 KVIMAAQKEARFVGHKYISTEHILLGILGDSNGLAAKILKSYGIDFNVSREQVMKLVGRG 70
Query: 170 SDMYFFSPEHPPLTEPARKALDWAIDEKLKSGGEGEINVAHLLLGIWSQKESAGQQILAG 229
FS + T A+ LD+++ + KS G ++ HLLLG+ Q++
Sbjct: 71 GGCSGFSCKDIRFTFDAKNVLDFSL-KHAKSLGYDNVDTMHLLLGLLQGSNGTVTQLIQN 129
Query: 230 LGFNDEKAKE 239
G + K +E
Sbjct: 130 QGADVNKIRE 139