Miyakogusa Predicted Gene
- Lj2g3v0463790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0463790.1 Non Characterized Hit- tr|D7MG09|D7MG09_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,42.75,1e-18,no
description,Helix-loop-helix domain; coiled-coil,NULL; helix loop
helix domain,Helix-loop-helix d,CUFF.34620.1
(206 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0007s0330.1 | transcription factor | HC | scaffold0007:1961... 243 1e-64
Medtr0007s0330.2 | transcription factor | HC | scaffold0007:1961... 219 2e-57
Medtr1g102380.1 | transcription factor bHLH120-like protein, put... 136 2e-32
Medtr1g102370.1 | transcription factor | HC | chr1:46230813-4622... 120 1e-27
Medtr0007s0380.1 | transcription factor | HC | scaffold0007:2188... 111 4e-25
Medtr2g090425.1 | helix loop helix DNA-binding domain protein | ... 56 2e-08
Medtr2g013920.1 | helix loop helix DNA-binding domain protein | ... 55 3e-08
Medtr8g027495.1 | ABA-inducible bHLH-type transcription factor |... 55 6e-08
Medtr2g090480.1 | helix loop helix DNA-binding domain protein | ... 54 8e-08
Medtr2g090440.1 | helix loop helix DNA-binding domain protein | ... 54 1e-07
Medtr4g078350.1 | helix loop helix DNA-binding domain protein | ... 52 5e-07
Medtr1g048720.1 | transcription factor ORG2-like protein | HC | ... 47 1e-05
>Medtr0007s0330.1 | transcription factor | HC |
scaffold0007:196183-192795 | 20130731
Length = 204
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 153/194 (78%), Gaps = 6/194 (3%)
Query: 13 IAMDDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQ 72
I M +ENKKW+H+ETE+QRRQEM LCT LRSLLP+EYIKGKRS SDHVNEA++YINHLQ
Sbjct: 11 IVMMEENKKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQ 70
Query: 73 NKVKQLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSL-KCV 131
NKVKQLQ K+++LMK V NL +N S +++QPFVIV PFPGG+EIVCSYS KC+
Sbjct: 71 NKVKQLQDKKEELMK-VSNLSRNVTTQNGSSSSNIQPFVIVQPFPGGLEIVCSYSFNKCL 129
Query: 132 FPLSRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSDQLQRKLTEAI 191
FPLSRVL +LLKEGL+++S TS I+ RFI+TI SE+P I DYS+ LQRKLTEAI
Sbjct: 130 FPLSRVLSMLLKEGLNLISCTSNMIEGRFIYTIRSEEPIMPGI---DYSE-LQRKLTEAI 185
Query: 192 SSTGVGETLPEPQI 205
S + + E EP+I
Sbjct: 186 SCSSLQENSFEPEI 199
>Medtr0007s0330.2 | transcription factor | HC |
scaffold0007:196156-194510 | 20130731
Length = 163
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/161 (67%), Positives = 131/161 (81%), Gaps = 2/161 (1%)
Query: 15 MDDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNK 74
M +ENKKW+H+ETE+QRRQEM LCT LRSLLP+EYIKGKRS SDHVNEA++YINHLQNK
Sbjct: 1 MMEENKKWMHKETERQRRQEMSNLCTNLRSLLPIEYIKGKRSISDHVNEAMHYINHLQNK 60
Query: 75 VKQLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSL-KCVFP 133
VKQLQ K+++LMK V NL +N S +++QPFVIV PFPGG+EIVCSYS KC+FP
Sbjct: 61 VKQLQDKKEELMK-VSNLSRNVTTQNGSSSSNIQPFVIVQPFPGGLEIVCSYSFNKCLFP 119
Query: 134 LSRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNI 174
LSRVL +LLKEGL+++S TS I+ RFI+TI SE S +I
Sbjct: 120 LSRVLSMLLKEGLNLISCTSNMIEGRFIYTIRSEVNSACSI 160
>Medtr1g102380.1 | transcription factor bHLH120-like protein,
putative | HC | chr1:46235719-46236971 | 20130731
Length = 191
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 109/179 (60%), Gaps = 9/179 (5%)
Query: 16 DDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKV 75
D+++KK I RE EKQRR +M LC++LRS LP + IKGKRS SDH+ EA NY+ L+ K+
Sbjct: 15 DNDDKKMIRREVEKQRRMQMSILCSSLRSSLPFDLIKGKRSVSDHIGEAANYVQILKQKI 74
Query: 76 KQLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIV-CSYSLKCVFPL 134
+L+ KRDK+ + V + TG E P+ + V + PGGVEIV CS L
Sbjct: 75 NELEIKRDKMKEMVSSSRVETGNELSADPSSVVKCVKIDLIPGGVEIVICSGLEDYSSRL 134
Query: 135 SRVLDILLKEGLDVVSSTSTKIDERFIHTIIS--EDPSHLNILDTDYSDQLQRKLTEAI 191
S ++ I+L+EG DVV + +++ + HTI S ED +HLN+ +LQ KL AI
Sbjct: 135 SDLMKIILQEGCDVVHCVTNQVNGKIFHTIKSEVEDLAHLNLA------RLQNKLDHAI 187
>Medtr1g102370.1 | transcription factor | HC |
chr1:46230813-46229149 | 20130731
Length = 244
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 23/179 (12%)
Query: 17 DENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVK 76
++ KK +HRE EKQRRQEM L T+LRSLLPL +IKGKRS SD +NEA+NYINHL+ +K
Sbjct: 72 EDKKKMVHREIEKQRRQEMATLHTSLRSLLPLHFIKGKRSLSDQMNEAVNYINHLKKNMK 131
Query: 77 QLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVF---- 132
+L YKRD+L K++ N CS T + V G+EI S K F
Sbjct: 132 ELSYKRDEL-KKLSNPSLKNKSHVSCSFTIHKNNRTV-----GIEI----STKTGFIEEG 181
Query: 133 -PLSRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILDTDYSD--QLQRKLT 188
PLS+ L+ L++ GLDVVS S +++ + +H++ E ++++D D +L+R L+
Sbjct: 182 APLSKFLEQLMRYGLDVVSCFSIQVNGKLLHSVQCE------VINSDSVDLTELRRNLS 234
>Medtr0007s0380.1 | transcription factor | HC |
scaffold0007:218856-222903 | 20130731
Length = 239
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 10 NKKIAMDDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYIN 69
N+ + + + +K +HRE E+QRRQEM +LRSLLPLE+IKGKRS SDH+NEA+NYI
Sbjct: 61 NQDNSFEQKKRKIVHREIERQRRQEMATYYASLRSLLPLEFIKGKRSISDHMNEAVNYIK 120
Query: 70 HLQNKVKQLQYKRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLK 129
H+QN + +L KRD+L K + + EN H + V G + I + L+
Sbjct: 121 HMQNNINELGTKRDELKK-----LSNSKLEN-IESNHASCNLNVQQNNGILRIEFTSGLR 174
Query: 130 -CVFPLSRVLDILLKEGLDVVSSTSTKIDERFIHTIISEDPSHLNILD 176
LS++L+ L KEG +V S +T+I+ R + +++ E ++ NI+D
Sbjct: 175 EEKLKLSQLLNFLAKEGFEVDSCVTTEINGRLLQSVMCE-VNNSNIVD 221
>Medtr2g090425.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38561453-38566915 | 20130731
Length = 327
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 4/169 (2%)
Query: 27 TEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTS--DHVNEAINYINHLQNKVKQLQYKRDK 84
EK RR +M L + L SLLP Y + + + D V+EAINYI L+ +K + K++
Sbjct: 21 VEKNRRNQMKILFSKLNSLLP-SYNQKELALPLPDQVDEAINYIKSLEINIKLAKEKKES 79
Query: 85 LMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKE 144
LM + P + +H ++++ + + F ++ IL +E
Sbjct: 80 LMGNKKRSRGGWSSSYGAKGSIELPKIEIHEIGPTLQVIVTCGVDEHFIFCEIMRILHEE 139
Query: 145 GLDVVSSTSTKIDERFIHTIISEDP-SHLNILDTDYSDQLQRKLTEAIS 192
+DV+SS S+ + +HT++++ P S L +T S +L+ + ++S
Sbjct: 140 NVDVISSNSSLAGDSLLHTVLAQIPQSLLQFGETKISKRLKAFVDGSMS 188
>Medtr2g013920.1 | helix loop helix DNA-binding domain protein | HC
| chr2:3826720-3828487 | 20130731
Length = 174
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 27 TEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQYKRDKLM 86
E+ RR +M LC L SLLP + K S D + EA NYI LQ +++++ K++ L+
Sbjct: 15 VERNRRNQMKALCQKLNSLLPHQTSKEAISVPDQLKEATNYIKKLQINLEKMKEKKNFLL 74
Query: 87 K-EVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKEG 145
+ PN++ + P + + +E+V L+ F S +L +EG
Sbjct: 75 GIQRPNVNLNRNQKMGLKS----PKIKIQQIGLVLEVVLITGLESQFLFSETFRVLHEEG 130
Query: 146 LDVVSSTSTKIDERFIHTI 164
+D+V+++ ++ H+I
Sbjct: 131 VDIVNASYKVNEDSVFHSI 149
>Medtr8g027495.1 | ABA-inducible bHLH-type transcription factor | HC
| chr8:9802803-9805726 | 20130731
Length = 623
Score = 54.7 bits (130), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 24 HRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQYKRD 83
H E E+QRR+++ + LR+++P K + + +AI YIN LQ K+K ++ +R+
Sbjct: 459 HVEAERQRREKLNQRFYALRAVVP---NISKMDKASLLGDAIAYINELQAKLKTMESERE 515
Query: 84 KLMKEVPNLHTTTGPENECS--PTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDIL 141
+L + ++ P N + P P + + GV + S S+ V P+S+V+
Sbjct: 516 QLGITSRDGSSSAPPANSRAENPQSRAPDIDIQAAQDGVIVKVSCSID-VHPISKVIQSF 574
Query: 142 LKEGLDVVSSTSTKIDERFIHTII 165
+D+V S ++ HT I
Sbjct: 575 KDTEIDIVESKLNAANDTVFHTFI 598
>Medtr2g090480.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38605874-38608239 | 20130731
Length = 219
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 3/167 (1%)
Query: 28 EKQRRQEMGKLCTTLRSLLPLEYIKG-KRSTSDHVNEAINYINHLQNKVKQLQYKRDKLM 86
EK RR +M L + L SLLP K D V+EAINYI L+ +K + K++ LM
Sbjct: 22 EKNRRNQMKILFSNLNSLLPSYNPKELALPLPDQVDEAINYIKRLETNIKLAKEKKESLM 81
Query: 87 KEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKEGL 146
+ + L P + +H ++I+ + + F ++ IL +E +
Sbjct: 82 GNKRSRGDCSSSSGAKGIIKL-PKIEIHEMGPTLQIIVTCGVDEHFIFCEIMRILHEENV 140
Query: 147 DVVSSTSTKIDERFIHTIISEDP-SHLNILDTDYSDQLQRKLTEAIS 192
+V+SS ++ +HT+ ++ P S L +T S++L+ + ++S
Sbjct: 141 EVISSNTSLTGHSLLHTVHAQIPQSLLQFGETKISERLKAFVNGSVS 187
>Medtr2g090440.1 | helix loop helix DNA-binding domain protein | LC
| chr2:38580669-38583058 | 20130731
Length = 217
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 27 TEKQRRQEMGKLCTTLRSLLPLEYIKG-KRSTSDHVNEAINYINHLQNKVKQLQYKRDKL 85
EK RR +M L + L S+LP K D V+EAINYI L+ +K + K++ L
Sbjct: 21 VEKNRRNQMKILFSNLNSILPSYNPKELALPLPDQVDEAINYIKSLETNLKGAKEKKESL 80
Query: 86 MKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKEG 145
M N + G P + +H ++++ + + F ++ IL +E
Sbjct: 81 MG---NKKRSRGGYGAKGSIIKLPKIEIHEMGSTLQVIVTCGVDEHFIFCEIMRILHEEN 137
Query: 146 LDVVSSTSTKIDERFIHTIISEDPSHL 172
++V+SS S+ + +HT+ ++ P L
Sbjct: 138 VEVISSNSSLTGDSLLHTVHAQIPQTL 164
>Medtr4g078350.1 | helix loop helix DNA-binding domain protein | HC
| chr4:30195137-30195963 | 20130731
Length = 208
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 25 RETEKQRRQEMGKLCTTLRSLLPLEYIKG-KRSTSDHVNEAINYINHLQNKVKQLQYKRD 83
R EK RR +M L + L SLLP K + D V+EAINYI L+ V+ K++
Sbjct: 20 RLVEKNRRNQMKILYSKLNSLLPNYNPKELPLALPDQVDEAINYIKSLEANVQMAMEKKE 79
Query: 84 KLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLK 143
+L+ C P +H ++I+ + L F ++ +L +
Sbjct: 80 RLLA-----GKNKRSREYCLDLPKSPCFEIHEIGSSLQIILTCGLDNQFIFYEIIRVLHE 134
Query: 144 EGLDVVSSTSTKI-DERFIHTIISEDP 169
E +D+ S S+K+ D +H + +E P
Sbjct: 135 ENVDIRSVNSSKVGDNSLLHVVHAEIP 161
>Medtr1g048720.1 | transcription factor ORG2-like protein | HC |
chr1:18792728-18791151 | 20130731
Length = 247
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 20 KKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQ 79
KK +H +E+ RR+++ L ++LRSLLP+ K S ++ + YI LQN+V+ L
Sbjct: 65 KKLVHNASERDRRKKINNLYSSLRSLLPVFDQMKKLSIPATISRVLKYIPELQNQVEGLI 124
Query: 80 YKRDK-LMKEVPNLHTTTGPENECSPTHL--QPFVIVHPFPGGVEIVCSYSLKCV--FPL 134
++D+ L++ P + + H FV+ EI S V PL
Sbjct: 125 KRKDEILLRLSPQVEEFILSKESQRKKHSYNSGFVVSISRLNDSEITIQISCYTVQKIPL 184
Query: 135 SRVLDILLKEGLDVVSSTSTK 155
S +L L +GL +++ +S+K
Sbjct: 185 SEILICLENDGLLLLNVSSSK 205