Miyakogusa Predicted Gene

Lj2g3v0435510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0435510.1 Non Characterized Hit- tr|B9SKW2|B9SKW2_RICCO
Transcriptional corepressor SEUSS, putative
OS=Ricinus,39.81,8e-17,seg,NULL; LIM_bind,NULL; coiled-coil,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,NODE_30231_length_1557_cov_207.021194.path1.1
         (401 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g029400.1 | transcriptional corepressor SEUSS-like protein...   148   1e-35
Medtr1g029400.2 | transcriptional corepressor SEUSS-like protein...   148   1e-35
Medtr3g089075.2 | transcriptional corepressor SEUSS-like protein...   145   5e-35
Medtr3g089075.1 | transcriptional corepressor SEUSS-like protein...   145   5e-35

>Medtr1g029400.1 | transcriptional corepressor SEUSS-like protein |
           HC | chr1:10071239-10080236 | 20130731
          Length = 911

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 80/106 (75%), Gaps = 4/106 (3%)

Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
           S AK  Y+ G+CARRL  Y+Y Q+ RP DN+I +WRKFVAEY++P AKK+WC+S+Y + G
Sbjct: 324 SPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGS-G 382

Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
               GVFPQ   D WHC+IC  K G+GFEAT+EVLPRL +IK+ SG
Sbjct: 383 RQTTGVFPQ---DIWHCEICNRKPGRGFEATAEVLPRLFKIKYESG 425


>Medtr1g029400.2 | transcriptional corepressor SEUSS-like protein |
           HC | chr1:10071239-10080236 | 20130731
          Length = 911

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 80/106 (75%), Gaps = 4/106 (3%)

Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
           S AK  Y+ G+CARRL  Y+Y Q+ RP DN+I +WRKFVAEY++P AKK+WC+S+Y + G
Sbjct: 324 SPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGS-G 382

Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
               GVFPQ   D WHC+IC  K G+GFEAT+EVLPRL +IK+ SG
Sbjct: 383 RQTTGVFPQ---DIWHCEICNRKPGRGFEATAEVLPRLFKIKYESG 425


>Medtr3g089075.2 | transcriptional corepressor SEUSS-like protein |
           HC | chr3:40781704-40775494 | 20130731
          Length = 891

 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
           S  K  Y+ G+CARRL  Y+Y Q+ RP DN+I +WRKFVAEYY+P AKK+WC+S+Y +  
Sbjct: 314 SPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYYAPNAKKKWCVSMYGS-S 372

Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
               GVFPQ   D WHC+IC  K G+GFEAT EVLPRL +IK+ SG
Sbjct: 373 RQTTGVFPQ---DVWHCEICNRKPGRGFEATVEVLPRLFKIKYESG 415


>Medtr3g089075.1 | transcriptional corepressor SEUSS-like protein |
           HC | chr3:40781704-40775494 | 20130731
          Length = 891

 Score =  145 bits (367), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 77/106 (72%), Gaps = 4/106 (3%)

Query: 296 SGAKRPYDSGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKKRWCLSLYDNVG 355
           S  K  Y+ G+CARRL  Y+Y Q+ RP DN+I +WRKFVAEYY+P AKK+WC+S+Y +  
Sbjct: 314 SPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYYAPNAKKKWCVSMYGS-S 372

Query: 356 HHALGVFPQAAMDAWHCDICGSKSGKGFEATSEVLPRLNEIKFGSG 401
               GVFPQ   D WHC+IC  K G+GFEAT EVLPRL +IK+ SG
Sbjct: 373 RQTTGVFPQ---DVWHCEICNRKPGRGFEATVEVLPRLFKIKYESG 415