Miyakogusa Predicted Gene
- Lj2g3v0435440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0435440.1 Non Characterized Hit- tr|I1NGP9|I1NGP9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.33371
PE,80.94,0,RRM_1,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; no descripti,CUFF.34828.1
(379 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 403 e-112
Medtr1g101520.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 328 7e-90
Medtr1g101520.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 328 7e-90
Medtr1g101520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 328 7e-90
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 236 3e-62
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 236 3e-62
Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 187 1e-47
Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 187 1e-47
Medtr8g032590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 177 1e-44
Medtr8g032590.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 177 1e-44
Medtr8g032590.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 167 1e-41
Medtr8g032590.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 167 1e-41
Medtr8g027190.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 1e-31
Medtr8g027190.9 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 1e-31
Medtr8g027190.10 | RNA-binding (RRM/RBD/RNP motif) family protei... 134 1e-31
Medtr8g027190.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 1e-31
Medtr8g027190.6 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 2e-31
Medtr8g027190.8 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 2e-31
Medtr8g027190.7 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 2e-31
Medtr8g027190.5 | RNA-binding (RRM/RBD/RNP motif) family protein... 133 2e-31
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 403 bits (1036), Expect = e-112, Method: Compositional matrix adjust.
Identities = 235/401 (58%), Positives = 258/401 (64%), Gaps = 35/401 (8%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
M++IFCGNFEYD R+SELERLFRRYGKVDRVDMK+GFAFIYM F
Sbjct: 1 MKAIFCGNFEYDCRESELERLFRRYGKVDRVDMKAGFAFIYMEDERDAEAAIRALDRIEF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEPY 119
GRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEPY
Sbjct: 61 GRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEPY 120
Query: 120 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEX 179
GKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 121 GKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPDR 179
Query: 180 XXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXXX 239
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 180 GRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRERG 239
Query: 240 XXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDSS 299
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 240 SPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGSD 299
Query: 300 RSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDNM 340
SPY VK SPENG + SPDA+GNPS YN Y GGSP+ M
Sbjct: 300 PSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNTM 357
Query: 341 RXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 379
RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 358 ----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 388
>Medtr1g101520.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856661-45851996 | 20130731
Length = 347
Score = 328 bits (840), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 60 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 118
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 119 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 178
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 179 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 238
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 239 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 298
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 299 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 339
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 340 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 379
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr1g101520.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856661-45851996 | 20130731
Length = 347
Score = 328 bits (840), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 60 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 118
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 119 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 178
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 179 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 238
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 239 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 298
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 299 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 339
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 340 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 379
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr1g101520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856668-45851996 | 20130731
Length = 347
Score = 328 bits (840), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 217/342 (63%), Gaps = 35/342 (10%)
Query: 60 FGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXX-XXXLFVINFDTFHTRTRDLERHFEP 118
FGRKGRRLRVEWTK ERG+ LFVINFDT+ TRTRDLERHFEP
Sbjct: 19 FGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERHFEP 78
Query: 119 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 178
YGKI SVRIR+NFAFVQYESEDDACKALEATNNSKL+DRVISVEFAA+ DDDRRNG+SP+
Sbjct: 79 YGKIVSVRIRKNFAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR-DDDRRNGHSPD 137
Query: 179 XXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGASPYKRERSSPDYXXXXXXXXXXXXXXX 238
ERGSPDYGRG SPYKRERSSPDY
Sbjct: 138 RGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGNSRSRSPHRRER 197
Query: 239 XXXXHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDS 298
+GRR+PSPYRRERDG++ VRD+SRSP+HKER RTDRS S S + R PQ G S
Sbjct: 198 GSPAYGRRNPSPYRRERDGAEAVRDTSRSPYHKERRRTDRSRSHSLEEGERIEPQKGHGS 257
Query: 299 SRSPYDPVKATSPENGEIKH-------------------SPDARGNPSDYNGYGGGSPDN 339
SPY VK SPENG + SPDA+GNPS YN Y GGSP+
Sbjct: 258 DPSPYGTVK-DSPENGHDRRRSPDAKRNPSPFNGSRGSPSPDAKGNPSPYNDY-GGSPNT 315
Query: 340 MRXXXXXXXXXXXXRDSPNYGGPESPMHERYR--SQSPPAEE 379
M RDSPNYGGPESPM+E+YR SQSPPAEE
Sbjct: 316 M----------PEPRDSPNYGGPESPMNEQYRSQSQSPPAEE 347
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 200/380 (52%), Gaps = 97/380 (25%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
M+ IFCGN ++DARQS++ERLFR+YGK+DRVD+KSGFAFIYM F
Sbjct: 1 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEF 60
Query: 61 GRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 119
GRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+PY
Sbjct: 61 GRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPY 120
Query: 120 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEX 179
GKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 121 GKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDR 180
Query: 180 XXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXXX 237
RGSPD YGRG SPD
Sbjct: 181 RG--------------------RGSPDGRYGRG---------SPD--------------- 196
Query: 238 XXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGG 296
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 197 ---GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANGR 245
Query: 297 DSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRDS 356
SRSP P + ++P + P+ARG S
Sbjct: 246 YDSRSP--PPRGSNPPS-----RPEARG-------------------------------S 267
Query: 357 PNYGGPESPMHERYRSQSPP 376
P Y ESPM+ RY S+SPP
Sbjct: 268 PKYERAESPMNRRYDSRSPP 287
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 200/380 (52%), Gaps = 97/380 (25%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
M+ IFCGN ++DARQS++ERLFR+YGK+DRVD+KSGFAFIYM F
Sbjct: 1 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEF 60
Query: 61 GRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPY 119
GRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+PY
Sbjct: 61 GRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPY 120
Query: 120 GKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEX 179
GKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 121 GKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDR 180
Query: 180 XXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXXX 237
RGSPD YGRG SPD
Sbjct: 181 RG--------------------RGSPDGRYGRG---------SPD--------------- 196
Query: 238 XXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGG 296
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 197 ---GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANGR 245
Query: 297 DSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRDS 356
SRSP P + ++P + P+ARG S
Sbjct: 246 YDSRSP--PPRGSNPPS-----RPEARG-------------------------------S 267
Query: 357 PNYGGPESPMHERYRSQSPP 376
P Y ESPM+ RY S+SPP
Sbjct: 268 PKYERAESPMNRRYDSRSPP 287
>Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 128/229 (55%), Gaps = 16/229 (6%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR +F GN EYD RQSELERLF +YG+++RVDMKSGFAF+Y F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
G RRL VEW + ERG LFVINFD TR D+ERHF+PYG
Sbjct: 61 GHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYG 116
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXX 180
+ VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 117 PLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYG---- 172
Query: 181 XXXXXXXXXXXXXXXXXXXXERGSPDYGRGASP-YKR-----ERSSPDY 223
R SPDYGR SP Y R R SPDY
Sbjct: 173 --GSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPDRRRSPDY 219
>Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 128/229 (55%), Gaps = 16/229 (6%)
Query: 1 MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXF 60
MR +F GN EYD RQSELERLF +YG+++RVDMKSGFAF+Y F
Sbjct: 1 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPF 60
Query: 61 GRKGRRLRVEWTKHERGIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEPYG 120
G RRL VEW + ERG LFVINFD TR D+ERHF+PYG
Sbjct: 61 GHDKRRLSVEWARGERG----RHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYG 116
Query: 121 KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXX 180
+ VRIRRNFAFVQYE+++DA KALE TN SK+LDRV+SVE+A +DD DR + Y
Sbjct: 117 PLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYG---- 172
Query: 181 XXXXXXXXXXXXXXXXXXXXERGSPDYGRGASP-YKR-----ERSSPDY 223
R SPDYGR SP Y R R SPDY
Sbjct: 173 --GSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYTGPDRRRSPDY 219
>Medtr8g032590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495544-12493893 | 20130731
Length = 283
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 168/346 (48%), Gaps = 97/346 (28%)
Query: 35 SGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXX 93
+GFAFIYM FGRKGRR+RVEWTK ER
Sbjct: 24 AGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKP 83
Query: 94 XXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSK 153
LF+INFD HTRTRDLERHF+PYGKI+++RIRRNFAF+Q+E++++A KALEATN SK
Sbjct: 84 SKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSK 143
Query: 154 LLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGA 211
+DRVI+VE+A +DDD +R+GYSP+ RGSPD YGRG
Sbjct: 144 FMDRVITVEYAIRDDDVKRDGYSPDRRG--------------------RGSPDGRYGRG- 182
Query: 212 SPYKRERSSPDYXXXXXXXXXXXXXXXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFH 270
SPD +GR RSPSPYRR R D R S+ +
Sbjct: 183 --------SPD------------------GRYGRGRSPSPYRRGRGSPDYGRGSNPASRP 216
Query: 271 KERGRTDRSSSLSPKRRGRTSPQNGGDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYN 330
+ RG SPK SP NG SRSP P + ++P + P+ARG
Sbjct: 217 EPRG--------SPKYERAESPANGRYDSRSP--PPRGSNPPS-----RPEARG------ 255
Query: 331 GYGGGSPDNMRXXXXXXXXXXXXRDSPNYGGPESPMHERYRSQSPP 376
SP Y ESPM+ RY S+SPP
Sbjct: 256 -------------------------SPKYERAESPMNRRYDSRSPP 276
>Medtr8g032590.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495544-12493893 | 20130731
Length = 283
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 168/346 (48%), Gaps = 97/346 (28%)
Query: 35 SGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXX 93
+GFAFIYM FGRKGRR+RVEWTK ER
Sbjct: 24 AGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKP 83
Query: 94 XXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNSK 153
LF+INFD HTRTRDLERHF+PYGKI+++RIRRNFAF+Q+E++++A KALEATN SK
Sbjct: 84 SKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSK 143
Query: 154 LLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGA 211
+DRVI+VE+A +DDD +R+GYSP+ RGSPD YGRG
Sbjct: 144 FMDRVITVEYAIRDDDVKRDGYSPDRRG--------------------RGSPDGRYGRG- 182
Query: 212 SPYKRERSSPDYXXXXXXXXXXXXXXXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFH 270
SPD +GR RSPSPYRR R D R S+ +
Sbjct: 183 --------SPD------------------GRYGRGRSPSPYRRGRGSPDYGRGSNPASRP 216
Query: 271 KERGRTDRSSSLSPKRRGRTSPQNGGDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYN 330
+ RG SPK SP NG SRSP P + ++P + P+ARG
Sbjct: 217 EPRG--------SPKYERAESPANGRYDSRSP--PPRGSNPPS-----RPEARG------ 255
Query: 331 GYGGGSPDNMRXXXXXXXXXXXXRDSPNYGGPESPMHERYRSQSPP 376
SP Y ESPM+ RY S+SPP
Sbjct: 256 -------------------------SPKYERAESPMNRRYDSRSPP 276
>Medtr8g032590.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495283-12493893 | 20130731
Length = 253
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 60 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 118
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 19 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 78
Query: 119 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 178
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 79 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 138
Query: 179 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 236
RGSPD YGRG SPD
Sbjct: 139 RRG--------------------RGSPDGRYGRG---------SPD-------------- 155
Query: 237 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 295
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 156 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 203
Query: 296 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 355
SRSP P + ++P + P+ARG
Sbjct: 204 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 225
Query: 356 SPNYGGPESPMHERYRSQSPP 376
SP Y ESPM+ RY S+SPP
Sbjct: 226 SPKYERAESPMNRRYDSRSPP 246
>Medtr8g032590.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12495283-12493893 | 20130731
Length = 253
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 160/321 (49%), Gaps = 97/321 (30%)
Query: 60 FGRKGRRLRVEWTKHER-GIXXXXXXXXXXXXXXXXXXLFVINFDTFHTRTRDLERHFEP 118
FGRKGRR+RVEWTK ER LF+INFD HTRTRDLERHF+P
Sbjct: 19 FGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDP 78
Query: 119 YGKIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPE 178
YGKI+++RIRRNFAF+Q+E++++A KALEATN SK +DRVI+VE+A +DDD +R+GYSP+
Sbjct: 79 YGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPD 138
Query: 179 XXXXXXXXXXXXXXXXXXXXXXERGSPD--YGRGASPYKRERSSPDYXXXXXXXXXXXXX 236
RGSPD YGRG SPD
Sbjct: 139 RRG--------------------RGSPDGRYGRG---------SPD-------------- 155
Query: 237 XXXXXXHGR-RSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNG 295
+GR RSPSPYRR R D R S+ + + RG SPK SP NG
Sbjct: 156 ----GRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRG--------SPKYERAESPANG 203
Query: 296 GDSSRSPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMRXXXXXXXXXXXXRD 355
SRSP P + ++P + P+ARG
Sbjct: 204 RYDSRSP--PPRGSNPPS-----RPEARG------------------------------- 225
Query: 356 SPNYGGPESPMHERYRSQSPP 376
SP Y ESPM+ RY S+SPP
Sbjct: 226 SPKYERAESPMNRRYDSRSPP 246
>Medtr8g027190.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 33 MKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXX 92
+ SGFAF+Y FG RRL VEW + ERG
Sbjct: 19 LYSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGSKPNQK 74
Query: 93 XXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNS 152
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE TN S
Sbjct: 75 PTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMS 134
Query: 153 KLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGAS 212
K+LDRV+SVE+A +DD DR + Y R SPDYGR S
Sbjct: 135 KILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDYGRPRS 188
Query: 213 PYKRERSSPD 222
P + PD
Sbjct: 189 PVYDRYTGPD 198
>Medtr8g027190.9 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 33 MKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXX 92
+ SGFAF+Y FG RRL VEW + ERG
Sbjct: 19 LYSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGSKPNQK 74
Query: 93 XXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNS 152
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE TN S
Sbjct: 75 PTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMS 134
Query: 153 KLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGAS 212
K+LDRV+SVE+A +DD DR + Y R SPDYGR S
Sbjct: 135 KILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDYGRPRS 188
Query: 213 PYKRERSSPD 222
P + PD
Sbjct: 189 PVYDRYTGPD 198
>Medtr8g027190.10 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 33 MKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXX 92
+ SGFAF+Y FG RRL VEW + ERG
Sbjct: 19 LYSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGSKPNQK 74
Query: 93 XXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNS 152
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE TN S
Sbjct: 75 PTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMS 134
Query: 153 KLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGAS 212
K+LDRV+SVE+A +DD DR + Y R SPDYGR S
Sbjct: 135 KILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDYGRPRS 188
Query: 213 PYKRERSSPD 222
P + PD
Sbjct: 189 PVYDRYTGPD 198
>Medtr8g027190.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 235
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 33 MKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXXXXXXX 92
+ SGFAF+Y FG RRL VEW + ERG
Sbjct: 19 LYSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGSKPNQK 74
Query: 93 XXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALEATNNS 152
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE TN S
Sbjct: 75 PTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMS 134
Query: 153 KLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDYGRGAS 212
K+LDRV+SVE+A +DD DR + Y R SPDYGR S
Sbjct: 135 KILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDYGRPRS 188
Query: 213 PYKRERSSPD 222
P + PD
Sbjct: 189 PVYDRYTGPD 198
>Medtr8g027190.6 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 28 VDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXX 87
V +GFAF+Y FG RRL VEW + ERG
Sbjct: 8 VSNFSFVAGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGS 63
Query: 88 XXXXXXXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALE 147
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE
Sbjct: 64 KPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALE 123
Query: 148 ATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDY 207
TN SK+LDRV+SVE+A +DD DR + Y R SPDY
Sbjct: 124 CTNMSKILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDY 177
Query: 208 GRGASPYKRERSSPD 222
GR SP + PD
Sbjct: 178 GRPRSPVYDRYTGPD 192
>Medtr8g027190.8 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 28 VDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXX 87
V +GFAF+Y FG RRL VEW + ERG
Sbjct: 8 VSNFSFVAGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGS 63
Query: 88 XXXXXXXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALE 147
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE
Sbjct: 64 KPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALE 123
Query: 148 ATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDY 207
TN SK+LDRV+SVE+A +DD DR + Y R SPDY
Sbjct: 124 CTNMSKILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDY 177
Query: 208 GRGASPYKRERSSPD 222
GR SP + PD
Sbjct: 178 GRPRSPVYDRYTGPD 192
>Medtr8g027190.7 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 28 VDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXX 87
V +GFAF+Y FG RRL VEW + ERG
Sbjct: 8 VSNFSFVAGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGS 63
Query: 88 XXXXXXXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALE 147
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE
Sbjct: 64 KPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALE 123
Query: 148 ATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDY 207
TN SK+LDRV+SVE+A +DD DR + Y R SPDY
Sbjct: 124 CTNMSKILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDY 177
Query: 208 GRGASPYKRERSSPD 222
GR SP + PD
Sbjct: 178 GRPRSPVYDRYTGPD 192
>Medtr8g027190.5 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 229
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 28 VDRVDMKSGFAFIYMXXXXXXXXXXXXXXXXXFGRKGRRLRVEWTKHERGIXXXXXXXXX 87
V +GFAF+Y FG RRL VEW + ERG
Sbjct: 8 VSNFSFVAGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERG----RHRDGS 63
Query: 88 XXXXXXXXXLFVINFDTFHTRTRDLERHFEPYGKIASVRIRRNFAFVQYESEDDACKALE 147
LFVINFD TR D+ERHF+PYG + VRIRRNFAFVQYE+++DA KALE
Sbjct: 64 KPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALE 123
Query: 148 ATNNSKLLDRVISVEFAAKDDDDRRNGYSPEXXXXXXXXXXXXXXXXXXXXXXERGSPDY 207
TN SK+LDRV+SVE+A +DD DR + Y R SPDY
Sbjct: 124 CTNMSKILDRVVSVEYALRDDSDRVDNYG------GSPRRGGGLARSPSPGYRRRPSPDY 177
Query: 208 GRGASPYKRERSSPD 222
GR SP + PD
Sbjct: 178 GRPRSPVYDRYTGPD 192