Miyakogusa Predicted Gene

Lj2g3v0392950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0392950.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,90.22,0,Metallo-hydrolase/oxidoreductase,NULL; no
description,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY,CUFF.34553.1
         (329 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g050492.1 | cleavage and polyadenylation specificity facto...   639   0.0  
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...   117   2e-26
Medtr1g032500.2 | cleavage and polyadenylation specificity facto...   116   2e-26
Medtr1g032500.1 | cleavage and polyadenylation specificity facto...   116   3e-26

>Medtr1g050492.1 | cleavage and polyadenylation specificity factor
           subunit 2 | HC | chr1:19478035-19486897 | 20130731
          Length = 740

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/329 (92%), Positives = 318/329 (96%)

Query: 1   MGTSVQVKPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
           MGTSVQV PLCGVYNENPLSYLVSID FN LIDCGWNDHFDPSLLQPLSRVASTIDAVLL
Sbjct: 1   MGTSVQVTPLCGVYNENPLSYLVSIDSFNILIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60

Query: 61  SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDID 120
           SHPDTLHL ALPYA+K LGLSAPV+STEPVYRLGLLTMYD FLSRKQVS+FDLFTLDDID
Sbjct: 61  SHPDTLHLAALPYAIKHLGLSAPVYSTEPVYRLGLLTMYDHFLSRKQVSDFDLFTLDDID 120

Query: 121 SAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
           SAFQ+VTRLTYSQNHHLSGKGEGIVIAPH AGHLLGGTIWKITKDGEDVIYAVDFNHRKE
Sbjct: 121 SAFQTVTRLTYSQNHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180

Query: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAG 240
           RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLR+GGNVLLP+DTAG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAG 240

Query: 241 RVLELILMLESYWAEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFL 300
           R+LELILMLESYWA+ENL YPIYFL+YV+SSTIDYVKSFLEWMSD+IAKSFEQTRENIFL
Sbjct: 241 RILELILMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFL 300

Query: 301 LKYITLLVNKTELDNVPDGPKVVLASMAS 329
           LK ITLLV+K +LDN PDGPKVVLASMAS
Sbjct: 301 LKNITLLVSKADLDNAPDGPKVVLASMAS 329


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 165/341 (48%), Gaps = 49/341 (14%)

Query: 7   VKPLCGVYNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSRVAS 53
           V PL G  NE   S + ++  G   L DCG            + D  DPS          
Sbjct: 24  VTPL-GAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPS---------- 72

Query: 54  TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQFLSRKQVSE 110
           T+D +L++H    H  +LPY +++      VF   +T+ +Y+L LL+ Y + +S+  V +
Sbjct: 73  TVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKL-LLSDYVK-VSKVSVDD 130

Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVI 170
             L+   DI+ +   +  + + Q   ++G    I    + AGH+LG  ++ +   G  V+
Sbjct: 131 M-LYDEQDINRSMDKIEVIDFHQTVEVNG----IRFWCYTAGHVLGAAMFMVDIAGVRVL 185

Query: 171 YAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGG 230
           Y  D++  ++RHL       F     +I   Y   ++QP R  ++K F D++  T+  GG
Sbjct: 186 YTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQP-RHTREKRFTDVIHSTISQGG 244

Query: 231 NVLLPIDTAGRVLELILMLESYWAE----ENLVYPIYFLSYVSSSTIDYVKSFLEWMSDT 286
            VL+P    GR  EL+L+L+ YWA     +N+  PIY+ S ++   +   +++   M+D 
Sbjct: 245 RVLIPAYALGRAQELLLILDEYWANHPELQNI--PIYYASPLAKKCLTVYETYTLSMNDR 302

Query: 287 IAKSFEQTRENIFLLKYITLLVNKTELDNVPD-GPKVVLAS 326
           I    +  + N F  K+I+ L   + +D   D GP VV+AS
Sbjct: 303 I----QNAKSNPFAFKHISAL---SSIDIFKDVGPSVVMAS 336


>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 17/313 (5%)

Query: 22  LVSIDGFNFLIDCGWN-DHFDPSLLQPLSRVAST------IDAVLLSHPDTLHLGALPYA 74
           +V I+G   + DCG +  H D S      +++ +      +D ++++H    H+GAL Y 
Sbjct: 20  IVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDALDCIIITHFHLDHVGALAYF 79

Query: 75  MKQLGLSAPVFSTEPVYRLGLLTMYD-QFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
            +  G S PV+ T P   L  L + D + +   +  E + FT D I    + V  +   Q
Sbjct: 80  TEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTSDHIAECMKKVIAVDLKQ 139

Query: 134 NHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVR 193
              +    E + I  + AGH++G  ++ +     +++Y  D+N   +RHL    +   +R
Sbjct: 140 TVQVD---EDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LR 195

Query: 194 PAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAGRVLELILMLESYW 253
             +LIT++  A   +  +  +++EF   + K +  GG VL+P    GR  EL ++L+ YW
Sbjct: 196 LDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRILLDDYW 255

Query: 254 AEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVNKTEL 313
              NL  PIYF S ++     Y K  + W S  I  ++  +  N F  K +     ++ L
Sbjct: 256 ERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTY--STHNAFDFKNVHKF-ERSML 312

Query: 314 DNVPDGPKVVLAS 326
           D    GP V+ A+
Sbjct: 313 D--APGPCVLFAT 323


>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 148/313 (47%), Gaps = 17/313 (5%)

Query: 22  LVSIDGFNFLIDCGWN-DHFDPSLLQPLSRVAST------IDAVLLSHPDTLHLGALPYA 74
           +V I+G   + DCG +  H D S      +++ +      +D ++++H    H+GAL Y 
Sbjct: 20  IVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDALDCIIITHFHLDHVGALAYF 79

Query: 75  MKQLGLSAPVFSTEPVYRLGLLTMYD-QFLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
            +  G S PV+ T P   L  L + D + +   +  E + FT D I    + V  +   Q
Sbjct: 80  TEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTSDHIAECMKKVIAVDLKQ 139

Query: 134 NHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGSFVR 193
              +    E + I  + AGH++G  ++ +     +++Y  D+N   +RHL    +   +R
Sbjct: 140 TVQVD---EDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LR 195

Query: 194 PAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRSGGNVLLPIDTAGRVLELILMLESYW 253
             +LIT++  A   +  +  +++EF   + K +  GG VL+P    GR  EL ++L+ YW
Sbjct: 196 LDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRILLDDYW 255

Query: 254 AEENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVNKTEL 313
              NL  PIYF S ++     Y K  + W S  I  ++  +  N F  K +     ++ L
Sbjct: 256 ERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTY--STHNAFDFKNVHKF-ERSML 312

Query: 314 DNVPDGPKVVLAS 326
           D    GP V+ A+
Sbjct: 313 D--APGPCVLFAT 323