Miyakogusa Predicted Gene

Lj2g3v0371730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0371730.1 tr|I0Z3C5|I0Z3C5_9CHLO 60S ribosomal protein L36
OS=Coccomyxa subellipsoidea C-169 PE=3
SV=1,74.63,2e-19,RIBOSOMAL_L36E,Ribosomal protein L36e; 60S RIBOSOMAL
PROTEIN L36,Ribosomal protein L36e; Ribosomal_L,CUFF.34543.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g053730.2 | 60S ribosomal protein L36 | HC | chr6:19375356...   134   2e-32
Medtr6g053730.1 | 60S ribosomal protein L36 | HC | chr6:19375317...   134   2e-32
Medtr1g100960.2 | 60S ribosomal protein L36 | HC | chr1:45334310...   133   4e-32
Medtr1g100960.1 | 60S ribosomal protein L36 | HC | chr1:45334224...   132   1e-31

>Medtr6g053730.2 | 60S ribosomal protein L36 | HC |
           chr6:19375356-19377961 | 20130731
          Length = 111

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/78 (87%), Positives = 71/78 (91%)

Query: 4   HLLIKLCCLKQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 63
            L +K    K KTSKRVHFVR+LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH
Sbjct: 24  ELALKPSSRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 83

Query: 64  KRAKRKREEMSNVLRKMR 81
           KRAK+KREEMSNVLRKMR
Sbjct: 84  KRAKKKREEMSNVLRKMR 101


>Medtr6g053730.1 | 60S ribosomal protein L36 | HC |
           chr6:19375317-19377961 | 20130731
          Length = 111

 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/78 (87%), Positives = 71/78 (91%)

Query: 4   HLLIKLCCLKQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 63
            L +K    K KTSKRVHFVR+LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH
Sbjct: 24  ELALKPSSRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 83

Query: 64  KRAKRKREEMSNVLRKMR 81
           KRAK+KREEMSNVLRKMR
Sbjct: 84  KRAKKKREEMSNVLRKMR 101


>Medtr1g100960.2 | 60S ribosomal protein L36 | HC |
           chr1:45334310-45335758 | 20130731
          Length = 115

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/75 (92%), Positives = 71/75 (94%), Gaps = 2/75 (2%)

Query: 13  KQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREE 72
           K KTSKRVHFVR+LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREE
Sbjct: 33  KGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 92

Query: 73  MSNVLRKMRLVFTLC 87
           MSNVLRKMR  F LC
Sbjct: 93  MSNVLRKMR--FVLC 105


>Medtr1g100960.1 | 60S ribosomal protein L36 | HC |
           chr1:45334224-45335829 | 20130731
          Length = 111

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 70/78 (89%)

Query: 4   HLLIKLCCLKQKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 63
            L  +    K KTSKRVHFVR+LIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH
Sbjct: 24  ELAPRPSARKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 83

Query: 64  KRAKRKREEMSNVLRKMR 81
           KRAK+KREEMSNVLRKMR
Sbjct: 84  KRAKKKREEMSNVLRKMR 101