Miyakogusa Predicted Gene
- Lj2g3v0344980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v0344980.1 Non Characterized Hit- tr|I3T6E7|I3T6E7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,75.47,6e-16,Found in Skp1 protein family,SKP1 component;
SKP1-RELATED,NULL; SKP1,SKP1 component; no
description,,NODE_40834_length_1679_cov_14.275164.path1.1
(347 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g030670.1 | ubiquitin-protein ligase, putative | HC | chr8... 486 e-137
Medtr7g077810.1 | ubiquitin-protein ligase, putative | HC | chr7... 474 e-134
Medtr6g053620.2 | ubiquitin-protein ligase, putative | HC | chr6... 354 6e-98
Medtr2g100825.2 | SCF ubiquitin ligase, SKP1 component | HC | ch... 317 8e-87
Medtr2g100825.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 317 8e-87
Medtr6g053620.1 | ubiquitin-protein ligase, putative | HC | chr6... 316 2e-86
Medtr2g100830.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 308 6e-84
Medtr8g007185.1 | SKP1 family, tetramerisation domain protein | ... 279 2e-75
Medtr8g007205.1 | SKP1 family, tetramerisation domain protein | ... 278 7e-75
Medtr8g007195.1 | SKP1 family, tetramerisation domain protein | ... 234 7e-62
Medtr8g007220.1 | SKP1 family, dimerization domain protein | LC ... 220 1e-57
Medtr7g036780.1 | SKP1 family, tetramerisation domain protein | ... 220 1e-57
Medtr3g061700.1 | SKP1 family, dimerization domain protein | HC ... 150 2e-36
Medtr7g094120.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 78 1e-14
Medtr7g094150.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 74 2e-13
Medtr4g032400.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 74 2e-13
Medtr7g021400.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 73 4e-13
Medtr5g022730.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 73 4e-13
Medtr5g022710.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 73 4e-13
Medtr3g110048.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 73 4e-13
Medtr4g032460.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 72 6e-13
Medtr7g094170.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 72 8e-13
Medtr8g468480.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 72 9e-13
Medtr4g033460.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 72 1e-12
Medtr4g032510.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 71 1e-12
Medtr8g056060.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 71 2e-12
Medtr4g033455.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 70 3e-12
Medtr4g032450.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 70 3e-12
Medtr1g099870.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 69 5e-12
Medtr7g021380.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 69 5e-12
Medtr4g032500.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 68 1e-11
Medtr8g089730.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 63 4e-10
Medtr4g021390.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 62 6e-10
Medtr4g119422.1 | cullin-like protein | LC | chr4:49486759-49483... 62 1e-09
Medtr5g085030.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 60 4e-09
Medtr4g127240.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 60 4e-09
Medtr7g094280.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 59 1e-08
Medtr1g112590.1 | SCF ubiquitin ligase, SKP1 component, putative... 57 3e-08
Medtr4g032420.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 57 4e-08
Medtr7g094310.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 56 4e-08
Medtr4g017860.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 55 1e-07
Medtr2g065720.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 54 3e-07
Medtr2g066010.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 52 6e-07
>Medtr8g030670.1 | ubiquitin-protein ligase, putative | HC |
chr8:11365706-11369963 | 20130731
Length = 362
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/350 (71%), Positives = 272/350 (77%), Gaps = 3/350 (0%)
Query: 1 MSEIDMPVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL 60
MSE DM VIKPEMMKPYVWLQTSD+SIQQVEQEIAMFCP ICQEI+QKG G+SKNCA+CL
Sbjct: 1 MSETDMAVIKPEMMKPYVWLQTSDESIQQVEQEIAMFCPFICQEILQKGNGTSKNCAVCL 60
Query: 61 PQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLV 120
PQQVSPAMLSLILDYCRFHQV GRSNKERK+YDEKFVRIDTE+LCELTSAADSLQLKPLV
Sbjct: 61 PQQVSPAMLSLILDYCRFHQVLGRSNKERKAYDEKFVRIDTEKLCELTSAADSLQLKPLV 120
Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX 180
DLTSRALARIIEG++PEEIR+IFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYA
Sbjct: 121 DLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKE 180
Query: 181 XXXXXXXXNAEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXN-SL 239
N EAEEEHVDERSVDDLLSFINGNDGD N SL
Sbjct: 181 LKERERIKNVEAEEEHVDERSVDDLLSFINGNDGDPKGIKTSKNKKKNRRKKDQQKNSSL 240
Query: 240 KEVSELNKKA-VNGHNIRPESSEVD-ICETSNSQYREDDTFPSKLEFXXXXXXXXXXPAL 297
KE S +KKA VNGHN R +SSE D CETS+ + + D + P L
Sbjct: 241 KESSVPHKKAEVNGHNNRHQSSEADRPCETSSLFHTDYDPMIEFDDDDDDIDDDIDDPVL 300
Query: 298 KEKIDREVEDFARRLNSDWPERMQEFLTSGQERNTMLFSTHGTGFLRRHA 347
K KIDREVEDFARRLNSDWPER+++FL+S QER TMLF+T+G GFL RH
Sbjct: 301 KAKIDREVEDFARRLNSDWPERIKDFLSSSQERKTMLFTTNGNGFLGRHT 350
>Medtr7g077810.1 | ubiquitin-protein ligase, putative | HC |
chr7:29389785-29384437 | 20130731
Length = 342
Score = 474 bits (1220), Expect = e-134, Method: Compositional matrix adjust.
Identities = 245/350 (70%), Positives = 269/350 (76%), Gaps = 11/350 (3%)
Query: 1 MSEIDMPVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL 60
MSE+DM VIKPEMMKPY+WLQTSD SIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL
Sbjct: 1 MSEVDMSVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL 60
Query: 61 PQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLV 120
P++VSPAMLSL+LDYCRFHQVPGRSNKERKS+DEKF+R+DT+RLC+LTSAADSLQL+PLV
Sbjct: 61 PEKVSPAMLSLVLDYCRFHQVPGRSNKERKSHDEKFIRMDTKRLCDLTSAADSLQLRPLV 120
Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX 180
DLTSR LARIIEGK+PEEIREIFHLPDDLTEEEKLEPL+N TDDPRIRLLNRLYA
Sbjct: 121 DLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKE 180
Query: 181 XXXXXXXXNAEAEEEHVDERSVDDLLSFINGNDGD-XXXXXXXXXXXXXXXXXXXXXNSL 239
N E EEEHVDERSVDDLLSFINGND D +SL
Sbjct: 181 LKERGRLKNVELEEEHVDERSVDDLLSFINGNDADSKVSKTSKNKKKNRRKKEQKKSSSL 240
Query: 240 KEVSELNKKAVNGHNIRPESSEVDICETSNSQYREDDTFPSKLEF--XXXXXXXXXXPAL 297
E S+ K +NGH S+ DI TSN EDD F + EF PAL
Sbjct: 241 TEASKQKNKELNGH-----SAVSDIAGTSN-MLTEDDAFAHR-EFGDDDDNIDDEIDPAL 293
Query: 298 KEKIDREVEDFARRLNSDWPERMQEFLTSGQERNTMLFSTHGTGFLRRHA 347
+EKID+EVEDFARRLNSDWPERMQEFLT GQER +MLF+T+G GFLRR+
Sbjct: 294 QEKIDKEVEDFARRLNSDWPERMQEFLT-GQERTSMLFATNGNGFLRRNT 342
>Medtr6g053620.2 | ubiquitin-protein ligase, putative | HC |
chr6:19314613-19319425 | 20130731
Length = 353
Score = 354 bits (909), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 196/352 (55%), Positives = 227/352 (64%), Gaps = 13/352 (3%)
Query: 1 MSEIDMPVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL 60
MS M ++K EM K Y+WLQT D SIQQVE E+AMFCP+I E+IQ G GSSK AI L
Sbjct: 1 MSGAAMEIVKSEM-KSYIWLQTEDGSIQQVEAEVAMFCPMIFNEVIQTGMGSSKTYAISL 59
Query: 61 PQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLV 120
PQ+V+PAML L+LDYCRFH+ PGRSNKERK++DEKF+RIDT++LCEL SAA L+L+PLV
Sbjct: 60 PQRVTPAMLGLVLDYCRFHRAPGRSNKERKTFDEKFIRIDTKKLCELASAAHYLRLRPLV 119
Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX 180
DLT+RALAR IEGKTPEEIRE FHLPDDLTEEEKLEP++NITDDP IRLLNRLYA
Sbjct: 120 DLTTRALARKIEGKTPEEIRETFHLPDDLTEEEKLEPIKNITDDPHIRLLNRLYARKRRE 179
Query: 181 XXXXXXXXNAEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXN-SL 239
+ E EEE DERSVDDLLSFING DGD + S
Sbjct: 180 LKERNKLKDVEVEEEPKDERSVDDLLSFINGPDGDIKGTRSNKNKKKNRRRKDTAKDPSF 239
Query: 240 KEVSELNKKAVNG-----HNIRPESSEVDICETSNSQYREDDTFPSKLEFX-XXXXXXXX 293
+ +E + K N HN E D E S Q F SK+EF
Sbjct: 240 RSANENHSKEFNPLPSAYHNANFE----DALEASGVQDHIAVNFSSKIEFNESDFDDDDF 295
Query: 294 XPALKEKIDREVEDFARRLNSDWPERMQEFLTSGQERNTMLFSTHGTGFLRR 345
PA+KE++DREVEDFARRLNSDWP R+Q L S Q R S + G R
Sbjct: 296 DPAMKEELDREVEDFARRLNSDWPARIQ-ILPSHQNRRLTPISMNSNGSTNR 346
>Medtr2g100825.2 | SCF ubiquitin ligase, SKP1 component | HC |
chr2:43366853-43364097 | 20130731
Length = 310
Score = 317 bits (813), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 185/323 (57%), Positives = 211/323 (65%), Gaps = 24/323 (7%)
Query: 12 EMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSL 71
EM KPYVWLQTSD S QQVEQ+IAMFCP IC+E+ QKG GSSKNCA+CLPQQVS M SL
Sbjct: 5 EMTKPYVWLQTSDGSTQQVEQDIAMFCPFICEEL-QKGMGSSKNCAVCLPQQVSSPMWSL 63
Query: 72 ILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARII 131
IL+YCRFHQ PGRSNKERKSYD+ FV+IDT LCEL AA SLQ +PL+DLTSRALARII
Sbjct: 64 ILNYCRFHQAPGRSNKERKSYDDSFVKIDTNMLCELACAAHSLQFRPLIDLTSRALARII 123
Query: 132 EGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX--XXXXXXXXN 189
E ++PEEIR IF +PDDLTEEEKLEPL NITDDP IRLLNRLYA N
Sbjct: 124 EKRSPEEIRSIFRVPDDLTEEEKLEPLLNITDDPSIRLLNRLYAKKRRELLKERESIKKN 183
Query: 190 AEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXNSLKEVSELNKKA 249
+ EE DERSVDDLLSFING+ + K + N K
Sbjct: 184 VDVEE---DERSVDDLLSFINGDPKE------------IKTTSKNKKKRKKGQHKKNVK- 227
Query: 250 VNGH-NIRPESSEVDI-CETSNSQYREDDTFPSKLEFXXXXXXXXXXPALKEKIDREVED 307
VNGH +I +S+E D ETS D + PAL+ +IDREVE+
Sbjct: 228 VNGHDDIGNQSAETDKPFETSGLH---GDFMVEFDDDNSDDIDDEIDPALQARIDREVEE 284
Query: 308 FARRLNSDWPERMQEFLTSGQER 330
FARRLN ER+Q+F +S QER
Sbjct: 285 FARRLNCSLQERIQDFSSSAQER 307
>Medtr2g100825.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr2:43366853-43364097 | 20130731
Length = 310
Score = 317 bits (813), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 185/323 (57%), Positives = 211/323 (65%), Gaps = 24/323 (7%)
Query: 12 EMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSL 71
EM KPYVWLQTSD S QQVEQ+IAMFCP IC+E+ QKG GSSKNCA+CLPQQVS M SL
Sbjct: 5 EMTKPYVWLQTSDGSTQQVEQDIAMFCPFICEEL-QKGMGSSKNCAVCLPQQVSSPMWSL 63
Query: 72 ILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARII 131
IL+YCRFHQ PGRSNKERKSYD+ FV+IDT LCEL AA SLQ +PL+DLTSRALARII
Sbjct: 64 ILNYCRFHQAPGRSNKERKSYDDSFVKIDTNMLCELACAAHSLQFRPLIDLTSRALARII 123
Query: 132 EGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX--XXXXXXXXN 189
E ++PEEIR IF +PDDLTEEEKLEPL NITDDP IRLLNRLYA N
Sbjct: 124 EKRSPEEIRSIFRVPDDLTEEEKLEPLLNITDDPSIRLLNRLYAKKRRELLKERESIKKN 183
Query: 190 AEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXNSLKEVSELNKKA 249
+ EE DERSVDDLLSFING+ + K + N K
Sbjct: 184 VDVEE---DERSVDDLLSFINGDPKE------------IKTTSKNKKKRKKGQHKKNVK- 227
Query: 250 VNGH-NIRPESSEVDI-CETSNSQYREDDTFPSKLEFXXXXXXXXXXPALKEKIDREVED 307
VNGH +I +S+E D ETS D + PAL+ +IDREVE+
Sbjct: 228 VNGHDDIGNQSAETDKPFETSGLH---GDFMVEFDDDNSDDIDDEIDPALQARIDREVEE 284
Query: 308 FARRLNSDWPERMQEFLTSGQER 330
FARRLN ER+Q+F +S QER
Sbjct: 285 FARRLNCSLQERIQDFSSSAQER 307
>Medtr6g053620.1 | ubiquitin-protein ligase, putative | HC |
chr6:19312317-19319101 | 20130731
Length = 345
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/310 (55%), Positives = 202/310 (65%), Gaps = 12/310 (3%)
Query: 1 MSEIDMPVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICL 60
MS M ++K EM K Y+WLQT D SIQQVE E+AMFCP+I E+IQ G GSSK AI L
Sbjct: 1 MSGAAMEIVKSEM-KSYIWLQTEDGSIQQVEAEVAMFCPMIFNEVIQTGMGSSKTYAISL 59
Query: 61 PQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLV 120
PQ+V+PAML L+LDYCRFH+ PGRSNKERK++DEKF+RIDT++LCEL SAA L+L+PLV
Sbjct: 60 PQRVTPAMLGLVLDYCRFHRAPGRSNKERKTFDEKFIRIDTKKLCELASAAHYLRLRPLV 119
Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXX 180
DLT+RALAR IEGKTPEEIRE FHLPDDLTEEEKLEP++NITDDP IRLLNRLYA
Sbjct: 120 DLTTRALARKIEGKTPEEIRETFHLPDDLTEEEKLEPIKNITDDPHIRLLNRLYARKRRE 179
Query: 181 XXXXXXXXNAEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXN-SL 239
+ E EEE DERSVDDLLSFING DGD + S
Sbjct: 180 LKERNKLKDVEVEEEPKDERSVDDLLSFINGPDGDIKGTRSNKNKKKNRRRKDTAKDPSF 239
Query: 240 KEVSELNKKAVNG-----HNIRPESSEVDICETSNSQYREDDTFPSKLEFX-XXXXXXXX 293
+ +E + K N HN E D E S Q F SK+EF
Sbjct: 240 RSANENHSKEFNPLPSAYHNANFE----DALEASGVQDHIAVNFSSKIEFNESDFDDDDF 295
Query: 294 XPALKEKIDR 303
PA+KE++DR
Sbjct: 296 DPAMKEELDR 305
>Medtr2g100830.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr2:43369487-43368540 | 20130731
Length = 315
Score = 308 bits (789), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/322 (52%), Positives = 211/322 (65%), Gaps = 17/322 (5%)
Query: 12 EMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSL 71
+MMK YVWLQTSD SIQQVEQ+IAMFCP I +EI+QKGTGSSKNCA CLPQQVS +M SL
Sbjct: 5 KMMKSYVWLQTSDGSIQQVEQDIAMFCPFIRKEILQKGTGSSKNCATCLPQQVSSSMWSL 64
Query: 72 ILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARII 131
IL+YCRF PGRS+KE+K+YD+ FV+IDT+ LC L AA+SL+L+P++DLT +ALARII
Sbjct: 65 ILNYCRFRLAPGRSDKEQKAYDDNFVKIDTKMLCGLACAANSLRLQPVIDLTCQALARII 124
Query: 132 EGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXX--XXXXXN 189
++PEEIR++FH+ DDLTEEEKLEP+ N+T+DP IRLLNRLYA N
Sbjct: 125 GKRSPEEIRDMFHVSDDLTEEEKLEPIINVTNDPSIRLLNRLYAKKKKQLLEGPQRIKKN 184
Query: 190 AEAEEEHVDERSVDDLLSFINGNDGDXXXXXXXXXXXXXXXXXXXXXNSLKEVSELNKKA 249
+ EE D+RS+DDLLSFING+ K
Sbjct: 185 VDVEE---DQRSLDDLLSFINGDSKGIETIGKNKKKKKKGQHKKNV-----------KVN 230
Query: 250 VNGHNIRPESSEVD-ICETSNSQYREDDTFPSKLEFXXXXXXXXXXPALKEKIDREVEDF 308
V +NI+ +SSEVD +CETSN F + ALK K++REVE+F
Sbjct: 231 VGHNNIKHQSSEVDKLCETSNLHDDSMVQFIDDDDDDDFDEDDGIDLALKAKMNREVEEF 290
Query: 309 ARRLNSDWPERMQEFLTSGQER 330
ARRLNS ER+++F +S QER
Sbjct: 291 ARRLNSSREERIKDFSSSSQER 312
>Medtr8g007185.1 | SKP1 family, tetramerisation domain protein | HC
| chr8:1343308-1344189 | 20130731
Length = 293
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/330 (52%), Positives = 192/330 (58%), Gaps = 46/330 (13%)
Query: 10 KPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQ-KGTGSSKNCAICLPQQVSPAM 68
K EMM P VWLQT D SIQQVEQEIAMFCP ICQE+I GSSK ICLPQQV+PA+
Sbjct: 3 KTEMMNPCVWLQTYDGSIQQVEQEIAMFCPFICQELILLPQQGSSKTSPICLPQQVTPAI 62
Query: 69 LSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALA 128
L+LILDYCRFH V GRSNKERKSYDEKFVRID RLCELTSAA LQL PL DLT A+
Sbjct: 63 LTLILDYCRFHHVKGRSNKERKSYDEKFVRIDAPRLCELTSAAKYLQLNPLYDLTCHAIT 122
Query: 129 RIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXXX 188
RIIEGK+ EEIR+IFHLPDDL EEEKLE + N+T DP IRLLN LYA
Sbjct: 123 RIIEGKSSEEIRDIFHLPDDLMEEEKLELMLNLTCDPSIRLLNSLYAKKREQLIELKRVT 182
Query: 189 NAEAEEEHVDE--RSVDDLLSFING-NDGDXXXXXXXXXXXXXXXXXXXXXN-SLKEVSE 244
E+ RSVD+LLSFING NDG+ N SLKE
Sbjct: 183 KNVEVEDEDVVDGRSVDELLSFINGSNDGETKRKKTCKNKKNRRKKKDQQKNSSLKE--- 239
Query: 245 LNKKAVNGHNIRPESSEVDICETSNSQYREDDTFPSKLEFXXXXXXXXXXPALKEKIDRE 304
EDD +EF AL+E+IDRE
Sbjct: 240 -----------------------------EDDLV---VEFDDEIDQ-----ALQERIDRE 262
Query: 305 VEDFARRLNSDWPERMQEFLT-SGQERNTM 333
VE+FARRLN W ER +E L +G R +
Sbjct: 263 VEEFARRLNCSWEERKKEILRDAGNHREII 292
>Medtr8g007205.1 | SKP1 family, tetramerisation domain protein | HC
| chr8:1356279-1355398 | 20130731
Length = 293
Score = 278 bits (710), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 172/330 (52%), Positives = 191/330 (57%), Gaps = 46/330 (13%)
Query: 10 KPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQ-KGTGSSKNCAICLPQQVSPAM 68
K EMM P VWLQT D SIQ VEQEIAMFCP ICQE+I GSSK ICLPQQV+PA+
Sbjct: 3 KTEMMNPCVWLQTYDGSIQHVEQEIAMFCPFICQELILLPQQGSSKTSPICLPQQVTPAI 62
Query: 69 LSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALA 128
L+LILDYCRFH V GRSNKERKSYDEKFVRID RLCELTSAA LQL PL DLT A+
Sbjct: 63 LTLILDYCRFHHVKGRSNKERKSYDEKFVRIDAPRLCELTSAAKYLQLNPLYDLTCHAIT 122
Query: 129 RIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXXX 188
RIIEGK+ EEIR+IFHLPDDL EEEKLE + N+T DP IRLLN LYA
Sbjct: 123 RIIEGKSSEEIRDIFHLPDDLMEEEKLELMLNLTCDPSIRLLNSLYAKKREQLIELKRVT 182
Query: 189 NAEAEEEHVDE--RSVDDLLSFING-NDGDXXXXXXXXXXXXXXXXXXXXXN-SLKEVSE 244
E+ RSVD+LLSFING NDG+ N SLKE
Sbjct: 183 KNVEVEDEDVVDGRSVDELLSFINGSNDGETKRKKTCKNKKNRRKKKDQQKNSSLKE--- 239
Query: 245 LNKKAVNGHNIRPESSEVDICETSNSQYREDDTFPSKLEFXXXXXXXXXXPALKEKIDRE 304
EDD +EF AL+E+IDRE
Sbjct: 240 -----------------------------EDDLV---VEFDDEIDQ-----ALQERIDRE 262
Query: 305 VEDFARRLNSDWPERMQEFLT-SGQERNTM 333
VE+FARRLN W ER +E L +G R +
Sbjct: 263 VEEFARRLNCSWEERKKEILRDAGNHREII 292
>Medtr8g007195.1 | SKP1 family, tetramerisation domain protein | LC
| chr8:1349757-1350719 | 20130731
Length = 320
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 127/210 (60%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
Query: 8 VIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPA 67
+++ EMM YVWLQT D SIQQV+QEIAM P I QEI+QKGTGS K+ ICLPQQVSP+
Sbjct: 1 MLETEMMNSYVWLQTCDGSIQQVDQEIAMISPFILQEILQKGTGSCKSSPICLPQQVSPS 60
Query: 68 MLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRAL 127
+LS ILDYC+FH + G SNKERK YD KFVRID + L L AA SLQLKPL DLT AL
Sbjct: 61 LLSSILDYCQFHHIQGHSNKERKLYDAKFVRIDPDILFALAFAAKSLQLKPLNDLTCHAL 120
Query: 128 ARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXX 187
AR+IEGK+P+EIR++F P DLTEEE LE + N T D +IR LNRL
Sbjct: 121 ARLIEGKSPKEIRDMFIWPHDLTEEEILESIINKTCDCKIRHLNRLNINRRKERERVLEN 180
Query: 188 XNAEAEEEHV-DERSVDDLLSFING-NDGD 215
+ EE V DERS+++LLSFING NDG+
Sbjct: 181 VRVKQEEVVVEDERSIEELLSFINGSNDGE 210
>Medtr8g007220.1 | SKP1 family, dimerization domain protein | LC |
chr8:1360415-1361287 | 20130731
Length = 290
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/206 (56%), Positives = 147/206 (71%), Gaps = 3/206 (1%)
Query: 12 EMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSL 71
EM+KPYVWL+T DDSIQ V++EIAM CP ICQEI +KGTGSSK+ AICLP++VS AML+L
Sbjct: 5 EMVKPYVWLKTCDDSIQVVDREIAMVCPFICQEISEKGTGSSKSSAICLPEKVSLAMLNL 64
Query: 72 ILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARII 131
ILDYC FH + G SNKERK YDE+FVRI + L EL AA +LQLKPL+DLT +AR +
Sbjct: 65 ILDYCLFHHIQGHSNKERKLYDEEFVRIVADNLFELAYAAYNLQLKPLIDLTCHEIARTV 124
Query: 132 EGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXXXNAE 191
E K+P+EI +IFH DD +EE L+ + N T +P R L RL +
Sbjct: 125 EIKSPKEICDIFHWLDDRAKEEMLKLIINTTCNPS-RRLKRLMKNKRKEFERIQKNVEVK 183
Query: 192 AEEEH-VDERSVDDLLSFING-NDGD 215
EE+H VDER +++L+SFING NDG+
Sbjct: 184 REEKHVVDERPIEELVSFINGSNDGE 209
>Medtr7g036780.1 | SKP1 family, tetramerisation domain protein | LC
| chr7:13589811-13590524 | 20130731
Length = 237
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/208 (58%), Positives = 151/208 (72%), Gaps = 9/208 (4%)
Query: 10 KPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAML 69
K E MK ++LQT D SIQQVEQEIAMFCP ICQEI+QKG G S++ AICLP++VS AML
Sbjct: 3 KTETMK--LYLQTCDGSIQQVEQEIAMFCPFICQEILQKGMGFSESSAICLPKEVSSAML 60
Query: 70 SLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALAR 129
+ IL+YC+FH+V G S+KERK +DEKFV I TERL EL SAA+SL+L+ LV+LT RA+AR
Sbjct: 61 NSILEYCQFHRVRGCSDKERKLFDEKFVTIPTERLYELASAANSLKLRSLVELTCRAIAR 120
Query: 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXXXN 189
+E +PEEI + F+LP +EKLEP NIT +P I LL+RL
Sbjct: 121 TLERSSPEEICDTFNLP-----KEKLEPFINITCNPSIGLLDRLKRNKLKERGRVLENVG 175
Query: 190 AEAEEEH-VDERSVDDLLSFING-NDGD 215
+ +EEH VDER +D+LLSFING NDG+
Sbjct: 176 VQEKEEHVVDERPIDELLSFINGSNDGE 203
>Medtr3g061700.1 | SKP1 family, dimerization domain protein | HC |
chr3:24617910-24618577 | 20130731
Length = 203
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 95/149 (63%), Gaps = 31/149 (20%)
Query: 68 MLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRAL 127
ML+LILDYCRF V G SNKE+KSYD+KFV ID RLCEL S A LQL+PL DLT A+
Sbjct: 1 MLTLILDYCRFDHVQGHSNKEQKSYDDKFVWIDATRLCELMSVAKYLQLEPLYDLTCHAI 60
Query: 128 ARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAXXXXXXXXXXXX 187
ARIIEG++ EEI +IFHLPDDL EEEKLE + NIT DP IRL+N
Sbjct: 61 ARIIEGRSSEEIHDIFHLPDDLMEEEKLEQMLNITCDPSIRLMN---------------- 104
Query: 188 XNAEAEEEHVDERSVDDLLSFIN-GNDGD 215
D+LLSFIN NDG+
Sbjct: 105 --------------FDELLSFINESNDGE 119
>Medtr7g094120.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37466777-37466298 | 20130731
Length = 159
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 66/99 (66%), Gaps = 7/99 (7%)
Query: 62 QQVSPAMLSLILDYCRFH-QV------PGRSNKERKSYDEKFVRIDTERLCELTSAADSL 114
Q V+ +L+ +++YC+ H QV P S + K++D FV++D E L EL AA+ L
Sbjct: 48 QNVTGKILAKVIEYCKKHVQVASADEKPSESEEYLKNWDADFVKVDKETLFELILAANYL 107
Query: 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153
+K L+DLT ++ A +++GKTPEE+RE+F++ +D + EE
Sbjct: 108 DIKSLLDLTCQSAADMMKGKTPEEMREMFNIKNDFSPEE 146
>Medtr7g094150.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37476563-37476093 | 20130731
Length = 156
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 12/137 (8%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD+ +V + +A+ I I T + I +P V+ +L+ +++YC+ H
Sbjct: 10 LKSSDNETFEVPEAVALESQTIKHMIEDDCTDN----GIPVPN-VTGQILAKVIEYCKKH 64
Query: 80 QVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
V S+ E+ K++D +FV++D ++L +L AA+ L +K L+DLT + +A +I+G
Sbjct: 65 -VDAESSDEKPSEDDLKNWDAEFVKVDQDKLFDLILAANYLNIKSLLDLTCQTVADMIKG 123
Query: 134 KTPEEIREIFHLPDDLT 150
KTPEEIR+ F++ +D T
Sbjct: 124 KTPEEIRKTFNIKNDFT 140
>Medtr4g032400.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11160477-11160971 | 20130731
Length = 164
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 19/143 (13%)
Query: 18 VWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCA----ICLPQQVSPAMLSLIL 73
+ L++SD+ ++E+ +A+ I I NCA I LP V+ +L++++
Sbjct: 14 ITLKSSDNETFEIEKAVALESQTIKHLI-------DDNCADDSGIPLPN-VTGKILAMVI 65
Query: 74 DYCRFHQVPGRSNKERKS------YDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRAL 127
++C+ H V S+ E+ S +D +FV++D + L +L AA+ L +K L+DLT + +
Sbjct: 66 EHCKKH-VDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTV 124
Query: 128 ARIIEGKTPEEIREIFHLPDDLT 150
A +I+G+TPEEIR+ F++ +D T
Sbjct: 125 ADMIKGRTPEEIRKTFNIINDYT 147
>Medtr7g021400.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:6778355-6778825 | 20130731
Length = 156
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 83/137 (60%), Gaps = 12/137 (8%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD+ +V + +A+ I I T + I +P V+ +L+ +++YC+ H
Sbjct: 10 LKSSDNETFEVPEAVALESQTIKHMIEDDCTDN----GIPVPN-VTGQILAKVIEYCKKH 64
Query: 80 QVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
V S+ E+ K++D +FV++D + L +L AA+ L +K L+DLT +++A +I+G
Sbjct: 65 -VDAASSDEKPSEDDLKNWDAEFVKVDQDTLFDLILAANYLNIKSLLDLTCQSVADMIKG 123
Query: 134 KTPEEIREIFHLPDDLT 150
KTPEEIR+ F++ +D T
Sbjct: 124 KTPEEIRKTFNIKNDFT 140
>Medtr5g022730.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:8991146-8992974 | 20130731
Length = 155
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD +V++ +A+ I + +I+ S I LP V+ +L+ +++YC+ H
Sbjct: 9 LKSSDGETFEVDEAVALESQTI-KHMIEDDCADS---GIPLPN-VTSKILAKVIEYCKKH 63
Query: 80 QVPGRSNK-----ERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGK 134
+ + E KS+D +FV++D L +L AA+ L +K L+DLT + +A +I+GK
Sbjct: 64 VDAAAAEEKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGK 123
Query: 135 TPEEIREIFHLPDDLT 150
TPEEIR+ F++ +D +
Sbjct: 124 TPEEIRKTFNIKNDFS 139
>Medtr5g022710.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:8981617-8983722 | 20130731
Length = 155
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 80/136 (58%), Gaps = 10/136 (7%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD +V++ +A+ I + +I+ S I LP V+ +L+ +++YC+ H
Sbjct: 9 LKSSDGETFEVDEAVALESQTI-KHMIEDDCADS---GIPLPN-VTSKILAKVIEYCKKH 63
Query: 80 QVPGR-----SNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGK 134
S E KS+D +FV++D L +L AA+ L +K L+DLT + +A +I+GK
Sbjct: 64 VEAAAAEEKPSEDEIKSWDGEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGK 123
Query: 135 TPEEIREIFHLPDDLT 150
TPEEIR+ F++ +D +
Sbjct: 124 TPEEIRKTFNIKNDFS 139
>Medtr3g110048.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr3:50914886-50915363 | 20130731
Length = 158
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 65/105 (61%), Gaps = 7/105 (6%)
Query: 62 QQVSPAMLSLILDYCRFHQVPGRSNKERK-------SYDEKFVRIDTERLCELTSAADSL 114
Q V+ +L+++++YC+ H ++ + K +D +FV++D L L AA+ L
Sbjct: 47 QDVTANILAMVIEYCKKHVDAAAASSDGKPSEDDLEDWDAEFVKVDKGTLFNLIDAANYL 106
Query: 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLR 159
++K L+DLT + +A +++GKTPEEIR F++ +D T +E+ E R
Sbjct: 107 EIKSLLDLTCQTVADMMKGKTPEEIRNTFNIENDFTPQEEEEVRR 151
>Medtr4g032460.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11179505-11179053 | 20130731
Length = 150
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 16 PYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDY 75
P + L++SD ++E+ +AM I + +I + + + V+ +L+++++Y
Sbjct: 5 PKIILKSSDGETFKIEKAVAMQSQTI-KHLIDEECANDTGIPL---TNVTGKILAMVIEY 60
Query: 76 CRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135
C+ H V S+ E + +D +FV++D L L AA+ L +K L+DLT I+ KT
Sbjct: 61 CKKH-VDAASSDELEKWDAEFVKVDQNTLFNLIMAANYLNIKSLLDLTCMTTMDNIKDKT 119
Query: 136 PEEIREIFHLPDDLT 150
PEEIR+IF++ +D T
Sbjct: 120 PEEIRKIFNIKNDYT 134
>Medtr7g094170.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37481085-37480615 | 20130731
Length = 156
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 64 VSPAMLSLILDYCRFHQVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLK 117
V+ +L+ +++YC+ H V S+ E+ K++D +FV++D +L L AA+ L +K
Sbjct: 49 VTGQILAKVIEYCKKH-VDAESSDEKPSEDDLKNWDAEFVKVDQAKLFGLILAANYLNIK 107
Query: 118 PLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150
L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct: 108 SLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 140
>Medtr8g468480.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:24817057-24817533 | 20130731
Length = 158
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 84/143 (58%), Gaps = 11/143 (7%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD ++++ +AM I + +I+ G + QV+ +L+ +++YC+ H
Sbjct: 9 LKSSDGETFEIDEVVAMESQTI-KHVIEAGCVDDAGIPLL---QVTRNILAKVIEYCKKH 64
Query: 80 QVPGRSNKERKS------YDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
V S++E+ S +D +F+++D L +LT AA+ L +K L DLT + +A +++
Sbjct: 65 -VEATSSEEKPSEDALNAWDTEFLKVDPYTLMKLTLAANYLNIKNLYDLTCKTIADMMKN 123
Query: 134 KTPEEIREIFHLPDDLTEEEKLE 156
K PEEIRE F++ +D T EE+ E
Sbjct: 124 KPPEEIRETFNIVNDYTPEEEAE 146
>Medtr4g033460.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11932971-11931829 | 20130731
Length = 248
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 85/138 (61%), Gaps = 10/138 (7%)
Query: 18 VWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCR 77
+ L +SD I ++E+ +AM I + +I+ +++ I +P+ V+ +L+LI++YC+
Sbjct: 12 ITLTSSDGEIFEIEKTVAMEFKTI-KNLIEDVVDNNR---IPIPK-VTGKILALIVEYCK 66
Query: 78 FHQVPGRSNKER-----KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIE 132
H S+++ K++D +FV++D L +L SAA L +K L DLT + +A ++
Sbjct: 67 KHVNAVNSDEKSSEHDLKTWDAEFVQLDHPVLFDLISAASFLDIKSLYDLTCKTVADMMN 126
Query: 133 GKTPEEIREIFHLPDDLT 150
GKTPE+IR +F++ +D +
Sbjct: 127 GKTPEQIRAMFNIVNDYS 144
>Medtr4g032510.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11192751-11192290 | 20130731
Length = 153
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 64 VSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLT 123
V+ +L+++++YC+ H S++ RK +D +FV++D + L L SAA+ L +K L+DLT
Sbjct: 51 VTSKILAMVIEYCKKHADDVSSDELRK-WDAEFVQVDQDTLFNLISAANYLNIKSLLDLT 109
Query: 124 SRALARIIEGKTPEEIREIFHLP-DDLTEEE 153
A I+ KTPEEIR+IF++ DD T EE
Sbjct: 110 CMTAADNIKDKTPEEIRKIFNIKNDDYTPEE 140
>Medtr8g056060.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:24406704-24406231 | 20130731
Length = 157
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Query: 18 VWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCR 77
V L++SDD +VE+ +A+ I + +I+ ++ I LP V+ +L+ +++YC+
Sbjct: 8 VTLKSSDDETFEVEEAVALKSQTI-KHMIEDDCAKTE---IPLPN-VTSKILAKVIEYCK 62
Query: 78 FHQVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARII 131
H S++ + K++D +FV++D EL AA+ L +K L++LT + +A I
Sbjct: 63 KHVEATTSSEGKPSEDDVKAWDAEFVKVDLNTRFELILAANYLDIKSLLELTCQDVAETI 122
Query: 132 EGKTPEEIREIFHLPDDLTEEEKLEPLRNI 161
+ KT EEIR+IF++ +D + EE E L+ +
Sbjct: 123 KDKTVEEIRKIFNVENDFSPEEYAELLKEV 152
>Medtr4g033455.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11929419-11928589 | 20130731
Length = 160
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 15/148 (10%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLP-QQVSPAMLSLILDYCRF 78
L +SD I ++E+E+AM I + +I+ +++ +P +V +L+L+++YC+
Sbjct: 14 LTSSDGEIFEIEKEVAMESKTI-KNLIEDLDDNTR-----IPIYKVRGEILALVIEYCKK 67
Query: 79 HQVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIE 132
H V ++ E+ K +D +FV++D L +L SAA+ L +K L DLT + +A ++
Sbjct: 68 H-VNAMNSDEKPSKHALKMWDAEFVQLDQPVLFDLISAANFLDIKSLYDLTCKTVADMMN 126
Query: 133 GKTPEEIREIFHLPDDLTEEEKLEPLRN 160
KTPE+IRE+F++ +D + +E+ E +R+
Sbjct: 127 DKTPEQIREMFNIVNDYSPQEE-EAIRS 153
>Medtr4g032450.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11174465-11174992 | 20130731
Length = 175
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 7/107 (6%)
Query: 53 SKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNK-----ERKSYDEKFVRIDTERLCEL 107
S + I +P V+ +L+ +++YC+ H RSN+ E K +D +FV++D E L +L
Sbjct: 57 SDDTGIPIPN-VTGKILAKVIEYCKKHVEYARSNEKPPEDELKKWDAEFVQVDQETLFDL 115
Query: 108 TSAADSLQLKPLVDLTSRALA-RIIEGKTPEEIREIFHLPDDLTEEE 153
AA+ L +K L+DLT +++A ++ KTPE IRE F++ +D + EE
Sbjct: 116 ILAANYLNIKSLLDLTCKSVADMMLAAKTPEAIRETFNIKNDYSPEE 162
>Medtr1g099870.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr1:45071880-45071569 | 20130731
Length = 103
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 7/93 (7%)
Query: 71 LILDYCRFH-QVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLT 123
+++DYC+ H S+ E+ K++D +FV++D L +L AA+ L +K L+DLT
Sbjct: 1 MVIDYCKKHVDATAASSDEKPSEDDLKNWDAEFVKVDQATLFDLILAANYLDIKGLLDLT 60
Query: 124 SRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156
+ +A +I+GKTPEEIR+ F++ +D T +E+ E
Sbjct: 61 CQIVADMIKGKTPEEIRKTFNIKNDFTPKEEEE 93
>Medtr7g021380.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:6774068-6774538 | 20130731
Length = 156
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 80/137 (58%), Gaps = 12/137 (8%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L++SD+ +V + +A+ I I T + I +P V+ +L+ +++YC+ H
Sbjct: 10 LKSSDNETFEVPEAVALELQTIKHMIKDDCTDN----GILVPN-VTGQILAKVIEYCKKH 64
Query: 80 QVPGRSNKER------KSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
+ S+ E+ K++D +FV++ L +L AA+ L +K L+DLT + +A +I+G
Sbjct: 65 -IDAASSDEKPSEDDLKNWDAEFVKVHQTTLFDLILAANDLNIKSLLDLTCQYVADMIKG 123
Query: 134 KTPEEIREIFHLPDDLT 150
KTPEEIR+ F++ +D T
Sbjct: 124 KTPEEIRKTFNIKNDFT 140
>Medtr4g032500.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11190203-11189647 | 20130731
Length = 152
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 64 VSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLT 123
V+ +L+++++YC+ H V S+ E + +D +FV++D + L +L AA L +K L DL
Sbjct: 51 VTGKILAMVIEYCKKH-VDAVSSDELRKWDAEFVQVDQDTLLKLILAARYLDIKSLYDLG 109
Query: 124 SRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLR 159
A I+ KTPEEI +IF++ D+ T EEK E R
Sbjct: 110 CMTTANNIKDKTPEEICKIFNIKDEYTPEEKEEVRR 145
>Medtr8g089730.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:37363116-37362796 | 20130731
Length = 106
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 12/89 (13%)
Query: 62 QQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVD 121
Q V+ +L+ +++YC+ H D FV++D L +L A++ L +K L+D
Sbjct: 14 QNVAGMILAKVIEYCKKH------------VDGDFVKVDQGTLFDLILASNYLDIKSLLD 61
Query: 122 LTSRALARIIEGKTPEEIREIFHLPDDLT 150
LT + +I+GKTPE+IRE FH+ +D T
Sbjct: 62 LTCETVVNMIKGKTPEQIRETFHIKNDFT 90
>Medtr4g021390.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:6948402-6947932 | 20130731
Length = 156
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
+++SD ++E+ ++ Q I G++ + I +P + L+ +++YC+ H
Sbjct: 12 MKSSDGETFEIEE-------VVFQSIKNLTDGAANDTEILVPH-IPGKFLAKVIEYCKKH 63
Query: 80 QVPGRSNK-----ERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGK 134
S++ E +D +FV++D + L AA L +K L+DL+ +ALA +I+ K
Sbjct: 64 VEAASSDEKLFDDELNKWDTEFVKVDNVTIFNLIWAASYLNIKSLLDLSMKALADMIKDK 123
Query: 135 TPEEIREIFHL 145
PEEI +IF++
Sbjct: 124 KPEEISKIFNI 134
>Medtr4g119422.1 | cullin-like protein | LC | chr4:49486759-49483972
| 20130731
Length = 368
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 20 LQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILDYCRFH 79
L +SD + +V+ ++A+ I I TG ++ L VS +L+++++YC+ H
Sbjct: 235 LISSDGDMFEVDYDVALMSKTIEDAIETDPTGDVNCISLSL---VSSKILAMVIEYCKKH 291
Query: 80 QVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEI 139
+ S+ + +D +FV + L +L +++ + + L +L + +I+GKT EI
Sbjct: 292 KNAQMSDVDLMDWDVEFVNVHYTTLFDLVLSSNYMNINSLYNLVGGKIGDMIKGKTAGEI 351
Query: 140 REIFHLPDDLTEEEK 154
++F + D T+EE+
Sbjct: 352 AQLFDIKDVCTQEEQ 366
>Medtr5g085030.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:36687130-36686663 | 20130731
Length = 155
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
Query: 64 VSPAMLSLILDYCRFHQVPGRSNKER-----KSYDEKFVRIDTERLCELTSAADSLQLKP 118
V+ +L+ +++YC+ H G S ++ ++++ +FV++D + L +L SAA+ L +K
Sbjct: 49 VTSNILAKVIEYCKKHVEVGSSEEKSLKDDLRAWESEFVKVDQDTLLDLISAANYLNIKN 108
Query: 119 LVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153
L+DLT + + +++ TPEEI + F +D + +E
Sbjct: 109 LLDLTCKTVGEMMKKTTPEEILKTFSSANDYSPKE 143
>Medtr4g127240.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:52792943-52791050 | 20130731
Length = 125
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 57 AICLPQQVSPAMLSLILDYCRFH-QVPGRSNKERKSYDEKFVR-IDTERLCELTSAADSL 114
I +P S +L+ +++YC+ H + ++++ K +D F++ ++ L EL AA+ L
Sbjct: 29 GIPVPNATSK-ILTKVIEYCKKHVEATSSTSEDHKVWDADFIKEVNVVMLFELIRAANYL 87
Query: 115 QLKPLVDL-TSRALARIIEGKTPEEIREIFHLPDDLT 150
+K L+DL T + +A +I+GKTPEEI + F++ +D T
Sbjct: 88 NVKSLLDLLTCQVVANMIKGKTPEEICKAFNIENDFT 124
>Medtr7g094280.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37526020-37525544 | 20130731
Length = 158
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 15 KPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGTGSSKNCAICLPQQVSPAMLSLILD 74
K + L++ D +V + +A+ I + II+ + I +P V+ +L+ +++
Sbjct: 6 KKMITLKSDDGETFEVSEAVALKSQTI-KHIIEDDCADN---VIPVPN-VTGKILAKVIE 60
Query: 75 YCRFHQVPGRSNKER------KSYDEKFVR-IDTERLCELTSAADSLQLKPLVDLTSRAL 127
YC+ H V S+ E+ K++D F + +D + L ++ AA+ L +K L+DL + +
Sbjct: 61 YCKKH-VEATSSDEKVSEDDLKNWDADFAKEVDQQTLFQILLAANYLNIKNLLDLCCQTV 119
Query: 128 ARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRN 160
A I+ K PEEIREIF + +D EE+ + +RN
Sbjct: 120 ADDIKDKKPEEIREIFSVENDFNPEEEAK-VRN 151
>Medtr1g112590.1 | SCF ubiquitin ligase, SKP1 component, putative |
LC | chr1:50963396-50964582 | 20130731
Length = 156
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 51 GSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKER-----KSYDEKFVRIDTERLC 105
G +N I +++S L I +Y + H ++ R +S+D +F+++D L
Sbjct: 45 GKDENYEISFEKEISSKTLLKINEYVKKHADAASTSSNRISRSLRSWDLEFIKVDRHTLF 104
Query: 106 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153
L AA LQ+ L++L+S + GKTPE+I ++L +D+T +E
Sbjct: 105 ALVLAAKYLQITDLINLSSETVRAKTRGKTPEKIHRYYNLKNDMTPQE 152
>Medtr4g032420.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11167586-11166063 | 20130731
Length = 150
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 9/96 (9%)
Query: 64 VSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLT 123
V+ +L+++++YC+ H V S+ E + +D +F +ID + L +L AA+ L LT
Sbjct: 57 VTGKILAMVIEYCKKH-VDAASSDELEKWDAEFDKIDQDTLLKLILAANYLAC-----LT 110
Query: 124 SRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLR 159
+ A I+ KTPEEIR+IF++ +D T EK E R
Sbjct: 111 T---ANNIKDKTPEEIRKIFNIKNDYTSAEKEEVRR 143
>Medtr7g094310.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37535215-37535690 | 20130731
Length = 148
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 68 MLSLILDYCRFHQVPGRSNKER------KSYDEKFVR-IDTERLCELTSAADSLQLKPLV 120
+L+ +++YC+ H V S+ E+ K++D F + +D + L ++ AA+ L +K L+
Sbjct: 44 ILAKVIEYCKKH-VEATSSDEKVSEDDLKNWDADFTKEVDQQTLFQILLAANYLNIKNLL 102
Query: 121 DLTSRALARIIEGKTPEEIREIFHLPDDLTEEE 153
DL + +A I+ K PEEIR+IF++ +D + EE
Sbjct: 103 DLCCQTVADDIKDKKPEEIRKIFNVENDFSPEE 135
>Medtr4g017860.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:5646317-5647329 | 20130731
Length = 220
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 92 YDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150
+D +FV++D L EL AA+ L +K L++LT + + I+ GKT E+IR+ F + +D +
Sbjct: 146 WDAEFVKVDNTTLFELVRAANYLDIKSLLELTCKTVGEIMHGKTSEQIRQAFKIANDFS 204
>Medtr2g065720.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr2:27549510-27548893 | 20130731
Length = 205
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
Query: 18 VWLQTSDDSIQQVEQEIAMFCPLICQEI--IQKGTGSSKNCAICLP-QQVSPAMLSLILD 74
+ L TSD+ + +V+ P I +E+ +Q S +P VS + L LI+
Sbjct: 37 ISLITSDNVVFKVK-------PSIAKEMGTVQTFVDESDGKITTVPLHNVSSSELPLIIK 89
Query: 75 YCRFHQVPGRSNKERKSYDEKFVR-IDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
YC V G NK +++ +FV+ +D E + +L AA+ L K L+D TS+ +A IE
Sbjct: 90 YCE-KNVAGEINK---AFEAEFVKNLDNEEVKDLFLAANYLDTKKLLDFTSQVIADRIEN 145
Query: 134 KTPEEIREIFHLPDDL---TEEEKL 155
K+ E +R+ F + D EEEKL
Sbjct: 146 KSVEYVRKYFGIEDTEFLPGEEEKL 170
>Medtr2g066010.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr2:27644963-27644373 | 20130731
Length = 196
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 18 VWLQTSDDSIQQVEQEIAMFCPLICQEI--IQKGTGSSKNCAICLP-QQVSPAMLSLILD 74
+ L TSD+ + +V+ P I +E+ +Q S +P V+ + L LI++
Sbjct: 20 ISLITSDNVVFKVK-------PSIAKEMATVQSFVDESDGKITTVPLHNVTSSELPLIIE 72
Query: 75 YCRFHQVPGRSNKERKSYDEKFVR-IDTERLCELTSAADSLQLKPLVDLTSRALARIIEG 133
YC V G NK +++ +FV+ +D E + +L AA+ L +K L+D TS+ +A I
Sbjct: 73 YCE-KNVAGEINK---AFEAEFVKNLDNEEVKDLFLAANYLDMKKLLDFTSQVIADRIAN 128
Query: 134 KTPEEIREIFHLPDDL---TEEEKL 155
K+ E +R+ F + D EEEKL
Sbjct: 129 KSVEYVRKYFGVEDTEFLPGEEEKL 153