Miyakogusa Predicted Gene

Lj2g3v0308710.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0308710.3 Non Characterized Hit- tr|C5WUG2|C5WUG2_SORBI
Putative uncharacterized protein Sb01g030700
OS=Sorghu,50.54,5e-19,seg,NULL; DUF3464,Protein of unknown function
DUF3464,CUFF.34511.3
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g051780.1 | transmembrane protein, putative | HC | chr6:18...   134   5e-32
Medtr5g027010.1 | transmembrane protein, putative | HC | chr5:11...    66   2e-11

>Medtr6g051780.1 | transmembrane protein, putative | HC |
           chr6:18030519-18029665 | 20130731
          Length = 183

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 4/181 (2%)

Query: 1   MKSLVCASHPTLYLPNYSS-WKPKFRAFHPITAEKQPNYYPLTTPKPPRANAKGFSN-RP 58
           MK+LV AS+P L     S   KP+   F      KQ NY   TT KP +A+AKGFSN RP
Sbjct: 1   MKTLVFASNPILQSSTQSPICKPQKFPFSQPNTSKQLNYQ-FTTLKP-QASAKGFSNTRP 58

Query: 59  STTETDIVPSKNRRRGVNEEEDEELPRVVLYRIIGRILFSXXXXXXXXXXXXXXXXXXKD 118
            +T         ++   N+ +D+++P+ V+YRIIGRILFS                  KD
Sbjct: 59  PSTNKAKDDVPIKKNPNNKNDDDDIPKEVMYRIIGRILFSTLVPMALGLSFLHLYGELKD 118

Query: 119 RGIWDAPLWIPFTTTLLTFGASTLGIAYGTLSASLDAEREGTFLGLNEVQRNWVEMWEEE 178
           R I++APLW+PF TTL+ FGAS LGIAYG LS SLDAEREG+ LG  EV++NW EMW++E
Sbjct: 119 RHIFNAPLWMPFVTTLVFFGASGLGIAYGVLSTSLDAEREGSLLGFEEVEKNWDEMWQQE 178

Query: 179 D 179
           +
Sbjct: 179 N 179


>Medtr5g027010.1 | transmembrane protein, putative | HC |
           chr5:11191060-11190213 | 20130731
          Length = 202

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 47/95 (49%)

Query: 83  LPRVVLYRIIGRILFSXXXXXXXXXXXXXXXXXXKDRGIWDAPLWIPFTTTLLTFGASTL 142
           +P VV  R+IGR+  S                  K     D P W+PF  +   FG++ L
Sbjct: 100 IPEVVTNRMIGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALL 159

Query: 143 GIAYGTLSASLDAEREGTFLGLNEVQRNWVEMWEE 177
           G++YG +SAS D  REG+ LG  E Q+NW   W+ 
Sbjct: 160 GVSYGIVSASWDPLREGSLLGWTEAQKNWPVFWKS 194