Miyakogusa Predicted Gene

Lj2g3v0286930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0286930.1 tr|B9ID70|B9ID70_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_808241 PE=4
SV=1,48.05,0.00000000003, ,CUFF.34496.1
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g055360.1 | flap endonuclease GEN-like protein | HC | chr6...   115   1e-26

>Medtr6g055360.1 | flap endonuclease GEN-like protein | HC |
           chr6:19794054-19802253 | 20130731
          Length = 571

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/108 (62%), Positives = 84/108 (77%), Gaps = 6/108 (5%)

Query: 2   AEPDLDTADFYLSHD-LEHCELSVQNISNKSSNEAVSSINKSEIIDLLSPSPPKAKQSSL 60
           AE DL+T +  LSHD +E+ E  +QNISN SSN+ VSS +K+ +IDLLSPSP K   SS 
Sbjct: 469 AEDDLNTENMMLSHDDIEYNEW-IQNISNISSNDVVSSKDKNVVIDLLSPSPLKPSNSS- 526

Query: 61  TSLKCEQSSDKRMEVINLSDSENDMSPEHKEKAKELRLFLASIRNEIH 108
              K   SSD+ ++VINLSDSEN++SPEHK+KAKELR+FLASIRNEIH
Sbjct: 527 ---KFHPSSDQNIDVINLSDSENEVSPEHKQKAKELRMFLASIRNEIH 571