Miyakogusa Predicted Gene

Lj2g3v0276760.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0276760.2 CUFF.34447.2
         (542 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g054960.1 | methyl-CpG-binding domain protein | HC | chr6:...    93   6e-19
Medtr8g096930.1 | methyl-CpG-binding domain protein | HC | chr8:...    75   1e-13
Medtr2g096520.1 | methyl-CpG-binding domain protein | HC | chr2:...    66   9e-11

>Medtr6g054960.1 | methyl-CpG-binding domain protein | HC |
           chr6:19637665-19642041 | 20130731
          Length = 459

 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 84/136 (61%), Gaps = 18/136 (13%)

Query: 335 DQECLSILSVPENGDKVDAKLG--SNPDFPLKEILSDPCIAFAIQTLTGTTCEAFKDPLI 392
           +++C+ +L   ENGDKV AKL      D PL+ IL+DP IAFA+QTLTG T E  KD  I
Sbjct: 319 EKDCVRVL---ENGDKVVAKLDYRCECDSPLQVILTDPSIAFAVQTLTGETFETSKDTQI 375

Query: 393 SSELKKSQHSETSGASAERHGKKINVPGEVSPK---LPSPEGFAVTQEHAGVAKNDHKTK 449
           SSELK  Q+ ET   SA+ HGKKINV  + S +   L S E FA+  +HA +A       
Sbjct: 376 SSELKSIQNCET---SAKEHGKKINVACDNSNRHNMLSSSESFAIEGKHADIA------L 426

Query: 450 ENAGSACEKTLDTSLM 465
           + AGS+ EK LD S M
Sbjct: 427 KIAGSS-EKKLDISKM 441


>Medtr8g096930.1 | methyl-CpG-binding domain protein | HC |
           chr8:40693034-40683472 | 20130731
          Length = 1325

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 41/65 (63%)

Query: 64  NVVVEKRPAEGLPPGWIKKTRITNKGDKIRRDPFYIDPVSGYTFRSIKDVDRYLASGKIG 123
           NV  E    E LPPGWIK+ +I      I++D FYIDPVSGY F S KDV R+L SG I 
Sbjct: 174 NVAGENSIVEDLPPGWIKEVKIRKHRSGIKKDWFYIDPVSGYVFHSKKDVQRFLKSGDIA 233

Query: 124 RNAFK 128
           + A K
Sbjct: 234 KCAIK 238



 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 8   EGLPPGWQVEVKVRKN--GKRSDKYYISPSSGLKFNSKAEVLRHLESAN 54
           E LPPGW  EVK+RK+  G + D +YI P SG  F+SK +V R L+S +
Sbjct: 183 EDLPPGWIKEVKIRKHRSGIKKDWFYIDPVSGYVFHSKKDVQRFLKSGD 231


>Medtr2g096520.1 | methyl-CpG-binding domain protein | HC |
           chr2:41226649-41222559 | 20130731
          Length = 286

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 17/117 (14%)

Query: 10  LPPGWQVEVKVR-KNGKRSDKYYISPSSGLKFNSKAEVLRHL---ESANKVSIQRI-SEN 64
           +P GW VE + R  N    D+YYI P +G KF S   V R+L   E+ + +  QRI SEN
Sbjct: 38  VPDGWLVEQRPRPSNPNHIDRYYIEPHTGQKFRSLVSVQRYLNGGETGDYLPTQRIISEN 97

Query: 65  VVVEKRPAEGLPPGWI--KKTRITNKGDKIRRDPFYIDPVSGYTFRSIKDVDRYLAS 119
                     LP GW+   + R++N     R D +YI+P +G  FRS+  V RYL +
Sbjct: 98  -------NNNLPDGWLVEHRPRLSNSD---RVDRYYIEPRTGQKFRSLTSVQRYLMA 144