Miyakogusa Predicted Gene

Lj2g3v0276760.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0276760.1 CUFF.34447.1
         (406 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g054960.1 | methyl-CpG-binding domain protein | HC | chr6:...    92   7e-19

>Medtr6g054960.1 | methyl-CpG-binding domain protein | HC |
           chr6:19637665-19642041 | 20130731
          Length = 459

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 84/136 (61%), Gaps = 18/136 (13%)

Query: 199 DQECLSILSVPENGDKVDAKLGSNP--DFPLKEILSDPCIAFAIQTLTGTTCEAFKDPLI 256
           +++C+ +L   ENGDKV AKL      D PL+ IL+DP IAFA+QTLTG T E  KD  I
Sbjct: 319 EKDCVRVL---ENGDKVVAKLDYRCECDSPLQVILTDPSIAFAVQTLTGETFETSKDTQI 375

Query: 257 SSELKKSQHSETSGASAERHGKKINVPGEVSPK---LPSPEGFAVTQEHAGVAKNDHKTK 313
           SSELK  Q+ ET   SA+ HGKKINV  + S +   L S E FA+  +HA +A       
Sbjct: 376 SSELKSIQNCET---SAKEHGKKINVACDNSNRHNMLSSSESFAIEGKHADIA------L 426

Query: 314 ENAGSACEKTLDTSLM 329
           + AGS+ EK LD S M
Sbjct: 427 KIAGSS-EKKLDISKM 441



 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 9   SARMPKKENINLPRRSSKRLAGIKADPILEHKTRNQVHRSPVKQPGEEETTTDGDKSTNS 68
           S ++P+ + I+  RR+SKRLAGIKADP  + K R + HR  VK+P E+ET     KS N 
Sbjct: 78  SGQIPRDQQIS--RRASKRLAGIKADPPQDLK-RTRAHRDLVKKPCEDETLIISKKSANR 134

Query: 69  FPNCLEKRFKSL 80
            PN  +++F +L
Sbjct: 135 LPNDQDRQFNAL 146



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 20  LPRRSSKRLAGIKADPILEHKTRNQVHRSPVKQPGEEETTTDGDKSTNSFPNCLEKRFKS 79
           +PRRS KRLAGIKAD +   +    V    VKQ GE +T  + D+STN  PN   K F +
Sbjct: 242 IPRRS-KRLAGIKADQLKTTRANQDV----VKQSGEGKTIVNADRSTNKLPNDQVKPFNA 296

Query: 80  LEEVSEIKCKSDNTENT 96
           L   SE    + +T+NT
Sbjct: 297 LHG-SEANFNNKSTDNT 312