Miyakogusa Predicted Gene

Lj2g3v0253500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0253500.1 tr|A9SNE2|A9SNE2_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,31.38,3e-17,seg,NULL,gene.g38710.t1.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g021860.1 | transmembrane protein, putative | HC | chr7:69...   261   5e-70

>Medtr7g021860.1 | transmembrane protein, putative | HC |
           chr7:6974178-6975062 | 20130731
          Length = 238

 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 171/217 (78%), Gaps = 5/217 (2%)

Query: 1   MQMLDSSVQSLIKSWKRRQRWLSIFTTTSSSLEDL--NRATWRTHLANFLESTWVRVFSX 58
           MQ+LDSS+Q+LIKS KRRQRWL +FTT++   +DL  NRA+WR HL+NFLEST +RV S 
Sbjct: 25  MQILDSSIQNLIKSCKRRQRWLFLFTTSNQ--QDLLNNRASWRIHLSNFLESTMIRVLSI 82

Query: 59  XXXXXXXXXXXXXXSSSLVSCDRVRDESRIEVWFHWIGIGILSLFSAKTIALFVGLGSSF 118
                         SSSLVSC +  +    E++FHWIGIGILS+ S K IAL VGLG SF
Sbjct: 83  LLLTIDLIITILELSSSLVSCKQKINIVE-ELYFHWIGIGILSIISMKIIALLVGLGFSF 141

Query: 119 FKHPGYVMDGVVAIGALLMESFLERKGGGLLVVVSLWRVIRVAESVFELSDEAIEAQIAG 178
           FKHPGYV+DG+VAIGAL+ME FLE++GGGLLVVVSLWRVIRV ESVFELSDEAIEAQI G
Sbjct: 142 FKHPGYVVDGIVAIGALIMEVFLEKRGGGLLVVVSLWRVIRVVESVFELSDEAIEAQIEG 201

Query: 179 IVCQFEELKEENMRLLETIHEKDKIIEMLTVDLDKCR 215
           IVCQFE LK+EN+RLL  I+EKDK+IE L  +LDKCR
Sbjct: 202 IVCQFEALKDENIRLLGIINEKDKLIEKLKEELDKCR 238