Miyakogusa Predicted Gene

Lj2g3v0227090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0227090.1 tr|C1DYP2|C1DYP2_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_55874
,49.07,5e-19,Pam16,Protein Transporter, Pam16; MITOCHONDRIA ASSOCIATED
GRANULOCYTE MACROPHAGE CSF SIGNALING MOLEC,CUFF.34392.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g037640.1 | import inner membrane translocase subunit tim1...   174   1e-44
Medtr4g116100.1 | import inner membrane translocase subunit tim1...   112   1e-25
Medtr1g098440.1 | import inner membrane translocase subunit tim1...    74   4e-14

>Medtr6g037640.1 | import inner membrane translocase subunit
           tim16-like protein | HC | chr6:13430117-13424255 |
           20130731
          Length = 115

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 4/117 (3%)

Query: 1   MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQ 60
           MA+KILANLIVMGGGIL RAV QAYRQAL NA+KNGVAQETIQNT+R+    +TEQEARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRKAK--ITEQEARQ 58

Query: 61  ILGVAEETPWEEILKKYDRLFENNSKNGSFYLQSKVHRAKECLEAV--HGKSEGTPS 115
           ILGV EE  WEEI KKY+++FENN+K+GSFYLQSK++RAKECLE     G+ +G PS
Sbjct: 59  ILGVTEEMSWEEITKKYEKMFENNAKSGSFYLQSKIYRAKECLEQTLKKGEGDGNPS 115


>Medtr4g116100.1 | import inner membrane translocase subunit
          tim16, putative | HC | chr4:48008657-48009613 |
          20130731
          Length = 186

 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 65/80 (81%)

Query: 1  MASKILANLIVMGGGILVRAVAQAYRQALNNAAKNGVAQETIQNTVRRVSKVMTEQEARQ 60
          MA+KILANLIV+GG IL R V  AYRQAL NA KNGVAQETIQN V R SK+MT +EA+ 
Sbjct: 1  MAAKILANLIVIGGSILARGVVAAYRQALQNATKNGVAQETIQNVVHRGSKMMTVEEAQL 60

Query: 61 ILGVAEETPWEEILKKYDRL 80
          ILGV E+T WE+I+KK++ +
Sbjct: 61 ILGVTEKTFWEDIVKKFETM 80


>Medtr1g098440.1 | import inner membrane translocase subunit
           tim16-like protein | HC | chr1:44321785-44322033 |
           20130731
          Length = 54

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 52  VMTEQEARQILGVAEETPWEEILKKYDRLFENNSKNGSFYLQSKVHRAKECLEAVH 107
           +MT +EAR ILGV E+T WE+I+KK++ +FE N+K  SFYLQSK+HRAKE LE + 
Sbjct: 1   MMTGEEARLILGVTEKTSWEDIVKKFETMFEKNTK--SFYLQSKIHRAKEFLETLQ 54