Miyakogusa Predicted Gene

Lj2g3v0216900.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0216900.1 Non Characterized Hit- tr|A5BSF4|A5BSF4_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,40,0.00000000000001,GB DEF: HYPOTHETICAL PROTEIN F7P12.4,NULL;
FAMILY NOT NAMED,Transmembrane protein 18; FHA_DOMAIN,For,CUFF.34375.1
         (1346 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096000.1 | PIN domain protein | HC | chr1:43300842-433056...   364   e-100

>Medtr1g096000.1 | PIN domain protein | HC | chr1:43300842-43305675 |
            20130731
          Length = 1177

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 285/684 (41%), Positives = 366/684 (53%), Gaps = 143/684 (20%)

Query: 712  VEEVIPGTIFQQSKFIEEVA-MDSQSDGKNQDR-------------CDQWHIPL------ 751
            VEE IP T FQ    +EEVA +DS S+ + ++              CD+    L      
Sbjct: 577  VEEAIPVTNFQLINIVEEVATVDSLSNEEKENECDEEFKAYLYVKPCDEEGNSLDETVEE 636

Query: 752  -----QRESVNLPMTQEDLLNIT--NETQTPKP--------DMETLESC-KETMEKS-SK 794
                 Q ES+N  +TQE  L IT   E QT +         D++  E+C +E++E S + 
Sbjct: 637  TVKSFQTESLNPSVTQETDLEITEKKENQTLQSLVAVAGCFDVKFHENCVEESVEGSLTL 696

Query: 795  NQNIWSRRGKATNAPLIQTRKS-VLKGSNADNEAAMSDWN--NIINKAISKDLLSVLDTE 851
              +I SRR KA +AP  +TRKS +L   + D +  MS+    NIINK + +++ S LD E
Sbjct: 697  GSDILSRRDKAASAPQDRTRKSRLLNTPDVDTKFVMSNLKDINIINKPMPQNIFSDLD-E 755

Query: 852  EEIFTPDKENFRP-NMLQLRFLKKSGKLEETKHSKSQSSKDKTISKDLFSVLDGEKEEEE 910
            EE+FTP+KEN  P N    +F++K G LEE+K SKSQ + +   S   FS +    E   
Sbjct: 756  EEMFTPNKENSSPTNTFHSQFMRKKGVLEESKSSKSQRAHNLKAS---FSSIIYSAERCT 812

Query: 911  IYTPDKENFSPNTLHLRRMKRFGKLEETKHSKSQRSCSSKDRTISKDLFSVLDGENEEEV 970
                +KEN +P                    KSQR+       +      ++        
Sbjct: 813  SAISNKENQTP--------------------KSQRA-----HNLKASFSPIIYSAERSAS 847

Query: 971  YTPDKENFSPNTLHLRRMKKKGKLEEIKHSKFRWSPNPKGKFGPNIYSDE-SRSPTSNKE 1029
               +KEN +P               E +  K + S N +  F P IYS E S S  SNKE
Sbjct: 848  AISNKENLTP--------------REAREWKSQRSHNLRASFSPIIYSAERSASAISNKE 893

Query: 1030 NQTPKRVQDQKLQKKPFGTHIKLTQEHDVNALKNRVERVPFQSLKISGTS---------- 1079
            N TPK   +    + P      L   + +   K RVER+P QSL  SG +          
Sbjct: 894  NLTPKEALEWMSGRNP------LECRNTMELRKKRVERMPLQSLISSGGNHNSNSSPFSS 947

Query: 1080 SPVSAEKSI---DVR--DCEEISDKHNNPSDTSLVQKRSWDMIVDTTTLMNKESRKALQL 1134
            SP SA KSI    VR  +C  ISDKH  PS  S  +KRSWD++VDT++L+NKESRKALQL
Sbjct: 948  SPFSAAKSILGVTVRSSNCGHISDKHAQPSRISAERKRSWDLVVDTSSLLNKESRKALQL 1007

Query: 1135 LQGLKGTRLIVPRLVIRELQSMKQQNSFFRRFRRISEASLALEWVEECMVNTNWWIHIQS 1194
            LQGLK TRLI+P+ VIREL SMKQQ      FRRISEA+LALEW+EEC+  T WWIHIQS
Sbjct: 1008 LQGLKRTRLIIPQSVIRELGSMKQQIGI---FRRISEAALALEWIEECIGKTKWWIHIQS 1064

Query: 1195 SV-DEGRRIAPTPPASPQTQICEESWSFHGGIGSFMEIPSPTIEDHILDFTLLHKRKQID 1253
            S+ DE R IAPTPP    TQ  E+                      +LD  L ++RK   
Sbjct: 1065 SMEDEFRLIAPTPP----TQFNED----------------------VLDCALQYRRKDNV 1098

Query: 1254 GQLVLLSEDVTLKINCMAEGLLCEPVQEFRESLVNPFSERFLWKNSSARGQTWCCEDDVV 1313
            GQ+VLLS+DV LKI  MA+GLL E VQ+FR+SLVNPFSERF+W NSS RG TW C DDVV
Sbjct: 1099 GQIVLLSDDVNLKIKSMAKGLLSETVQQFRQSLVNPFSERFMWANSSPRGLTWSCRDDVV 1158

Query: 1314 LRERYCRLPLRKSSKGAASGLKLI 1337
            LRE+YC LP       + +GLKL+
Sbjct: 1159 LREKYCCLP-------SKAGLKLL 1175



 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 84/132 (63%), Gaps = 6/132 (4%)

Query: 1   MASEKNP-EEEEGKIPVLTVLKNESILKNIFIVNKPPEDHSPRRRHRDHEDILLVGRHPD 59
           + S+ NP ++++  IPVLTV KN SILKN         +++      + + ILLVGRHP+
Sbjct: 5   VVSDDNPNQQQQSLIPVLTVFKNNSILKN-----IIILNNNNNNNKYNDDQILLVGRHPN 59

Query: 60  CDLMLTHPSISRYHLHIRSVPXXXXXXXXXXXXXHGTWVSGRKIEAGVRVEMKEGDTLRI 119
           C+++L HPSISR+HL IR  P             HGTWV GRK+E GV V++KEGDT ++
Sbjct: 60  CNIVLFHPSISRFHLQIRFNPSSRSISLLDLSSVHGTWVCGRKLEHGVSVDLKEGDTFQL 119

Query: 120 GVSSRVYRLHWI 131
           G SSRVY L ++
Sbjct: 120 GSSSRVYLLQFV 131