Miyakogusa Predicted Gene

Lj2g3v0193170.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0193170.1 tr|Q6IDC0|Q6IDC0_ARATH At3g45900 OS=Arabidopsis
thaliana GN=At3g45900 PE=2 SV=1,35.09,7e-18,coiled-coil,NULL; GB DEF:
EMB|CAB82814.1,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-RELATED,NULL,gene.g38592.t1.1
         (414 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091650.1 | ribonuclease P protein subunit P38, related pr...   649   0.0  
Medtr3g091650.3 | ribonuclease P protein subunit P38, related pr...   649   0.0  
Medtr3g091650.2 | ribonuclease P protein subunit P38, related pr...   454   e-128
Medtr5g026680.1 | ribonuclease P protein subunit P38, related pr...    92   1e-18

>Medtr3g091650.1 | ribonuclease P protein subunit P38, related
           protein, putative | HC | chr3:41722463-41726321 |
           20130731
          Length = 797

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/414 (76%), Positives = 359/414 (86%), Gaps = 6/414 (1%)

Query: 1   MRAEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 60
           +RAE ERYATLIEQRHH+ELDAFAEQM++KDEKLEAFRWQLLRTELETKQLQSHLEGLVK
Sbjct: 390 VRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 449

Query: 61  DVKQLRHDKMKLESLMFEKEDELASLKEQVASKLRPLNCFRNNSNLLQQSSELAQDAVWS 120
           DV QLRHDKMKLESL+ E+ED + SLK+Q ASKLRP NCFRNNSNL  QSSE+ QD VWS
Sbjct: 450 DVTQLRHDKMKLESLLLEREDAINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWS 509

Query: 121 GVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENNVEEEKDVPRE 180
            VK++K+KPGEK+++MMETL EE CEKE Q L HD+F++ +   QSPEN +EEEK V RE
Sbjct: 510 RVKIVKRKPGEKQLEMMETLTEEVCEKEVQPLNHDQFDDANSQVQSPENKIEEEKHVCRE 569

Query: 181 DSPIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQLV 240
           D+P P+Q   PN ++ +D AEKIGST+   FN  KQ  WKMDLHALGVSYKIKRLKQQL+
Sbjct: 570 DNPTPVQYQSPNHIE-IDTAEKIGSTS-KPFNDAKQFQWKMDLHALGVSYKIKRLKQQLI 627

Query: 241 LVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQGNE 300
           L+ERLTGMQ+N E++EI++DSK GMKA+LSL TLLNKQ+GRYQSLQEKTDDLCKRMQ N 
Sbjct: 628 LIERLTGMQNNDEHAEINEDSKVGMKAYLSLITLLNKQIGRYQSLQEKTDDLCKRMQENV 687

Query: 301 LYTNVGEMNGARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVEEM 360
           LY N GE+N AR KEKTSTLEHFLEETFQLQRYIVATGQKL E+Q+KIV GFVG V EEM
Sbjct: 688 LYANRGELNNARKKEKTSTLEHFLEETFQLQRYIVATGQKLFEIQSKIVSGFVG-VAEEM 746

Query: 361 DNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 414
           +    +AGIDMKRF+DSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR
Sbjct: 747 EK---SAGIDMKRFSDSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 797


>Medtr3g091650.3 | ribonuclease P protein subunit P38, related
           protein, putative | HC | chr3:41722369-41726321 |
           20130731
          Length = 797

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/414 (76%), Positives = 359/414 (86%), Gaps = 6/414 (1%)

Query: 1   MRAEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 60
           +RAE ERYATLIEQRHH+ELDAFAEQM++KDEKLEAFRWQLLRTELETKQLQSHLEGLVK
Sbjct: 390 VRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 449

Query: 61  DVKQLRHDKMKLESLMFEKEDELASLKEQVASKLRPLNCFRNNSNLLQQSSELAQDAVWS 120
           DV QLRHDKMKLESL+ E+ED + SLK+Q ASKLRP NCFRNNSNL  QSSE+ QD VWS
Sbjct: 450 DVTQLRHDKMKLESLLLEREDAINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWS 509

Query: 121 GVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENNVEEEKDVPRE 180
            VK++K+KPGEK+++MMETL EE CEKE Q L HD+F++ +   QSPEN +EEEK V RE
Sbjct: 510 RVKIVKRKPGEKQLEMMETLTEEVCEKEVQPLNHDQFDDANSQVQSPENKIEEEKHVCRE 569

Query: 181 DSPIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQLV 240
           D+P P+Q   PN ++ +D AEKIGST+   FN  KQ  WKMDLHALGVSYKIKRLKQQL+
Sbjct: 570 DNPTPVQYQSPNHIE-IDTAEKIGSTS-KPFNDAKQFQWKMDLHALGVSYKIKRLKQQLI 627

Query: 241 LVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQGNE 300
           L+ERLTGMQ+N E++EI++DSK GMKA+LSL TLLNKQ+GRYQSLQEKTDDLCKRMQ N 
Sbjct: 628 LIERLTGMQNNDEHAEINEDSKVGMKAYLSLITLLNKQIGRYQSLQEKTDDLCKRMQENV 687

Query: 301 LYTNVGEMNGARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVEEM 360
           LY N GE+N AR KEKTSTLEHFLEETFQLQRYIVATGQKL E+Q+KIV GFVG V EEM
Sbjct: 688 LYANRGELNNARKKEKTSTLEHFLEETFQLQRYIVATGQKLFEIQSKIVSGFVG-VAEEM 746

Query: 361 DNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 414
           +    +AGIDMKRF+DSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR
Sbjct: 747 EK---SAGIDMKRFSDSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 797


>Medtr3g091650.2 | ribonuclease P protein subunit P38, related
           protein, putative | HC | chr3:41722561-41726248 |
           20130731
          Length = 693

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/297 (74%), Positives = 256/297 (86%), Gaps = 2/297 (0%)

Query: 1   MRAEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 60
           +RAE ERYATLIEQRHH+ELDAFAEQM++KDEKLEAFRWQLLRTELETKQLQSHLEGLVK
Sbjct: 390 VRAETERYATLIEQRHHIELDAFAEQMRIKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 449

Query: 61  DVKQLRHDKMKLESLMFEKEDELASLKEQVASKLRPLNCFRNNSNLLQQSSELAQDAVWS 120
           DV QLRHDKMKLESL+ E+ED + SLK+Q ASKLRP NCFRNNSNL  QSSE+ QD VWS
Sbjct: 450 DVTQLRHDKMKLESLLLEREDAINSLKDQFASKLRPSNCFRNNSNLSPQSSEITQDPVWS 509

Query: 121 GVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENNVEEEKDVPRE 180
            VK++K+KPGEK+++MMETL EE CEKE Q L HD+F++ +   QSPEN +EEEK V RE
Sbjct: 510 RVKIVKRKPGEKQLEMMETLTEEVCEKEVQPLNHDQFDDANSQVQSPENKIEEEKHVCRE 569

Query: 181 DSPIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQLV 240
           D+P P+Q   PN ++ +D AEKIGST+   FN  KQ  WKMDLHALGVSYKIKRLKQQL+
Sbjct: 570 DNPTPVQYQSPNHIE-IDTAEKIGSTS-KPFNDAKQFQWKMDLHALGVSYKIKRLKQQLI 627

Query: 241 LVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQ 297
           L+ERLTGMQ+N E++EI++DSK GMKA+LSL TLLNKQ+GRYQSLQEKTDDLCKRM+
Sbjct: 628 LIERLTGMQNNDEHAEINEDSKVGMKAYLSLITLLNKQIGRYQSLQEKTDDLCKRMR 684


>Medtr5g026680.1 | ribonuclease P protein subunit P38, related
           protein | HC | chr5:11022068-11025942 | 20130731
          Length = 390

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)

Query: 211 FNKTKQSPWKMDLHALGVSYKIKRLKQQLVLVERLTGMQSNGENSEISDDSKGGMKAFLS 270
           F   ++SPWK+D  + GVS K+K L+Q+L+ ++++                  G      
Sbjct: 207 FVARRESPWKVDGDSAGVSSKLKLLEQELLNLDKI------------------GKDVPSK 248

Query: 271 LTTLLNKQVGRYQSLQEKTDDLCKRMQGNELYTNVGEMNGARAKEKTSTLEHFLEETFQL 330
           +++ + KQ  RYQSL EK D+LC+R+  +    ++       ++ +T T   FL E F+L
Sbjct: 249 VSSSIKKQAKRYQSLSEKIDELCRRIASDPCEPSLS------SEFRTQTQTEFLLEAFRL 302

Query: 331 QRYIVATGQKLMEVQTKIVPGFVGVVVEEMDNKSAAAGIDMKRFADSIRNLFHEVQRGLE 390
           Q+    T QKLM + T++            D       +  +R  DSIRN F E+QR LE
Sbjct: 303 QQDASETAQKLMALHTEVGKSHY------KDELRGEITLTTRRSMDSIRNNFRELQRNLE 356

Query: 391 VRTARIIGDLEGTLAREGMICLR 413
           +  ARIIGDLEG LAR+G   +R
Sbjct: 357 IWLARIIGDLEGILARDGASRVR 379