Miyakogusa Predicted Gene

Lj2g3v0189310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0189310.1 Non Characterized Hit- tr|I1KAT4|I1KAT4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.31790
PE,80.95,0.00000000005,seg,NULL,CUFF.34334.1
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g050518.1 | PP2A regulatory subunit TAP46-like protein | H...    62   1e-10
Medtr3g091640.1 | PP2A regulatory subunit TAP46-like protein | H...    62   1e-10

>Medtr1g050518.1 | PP2A regulatory subunit TAP46-like protein | HC |
           chr1:19528724-19531081 | 20130731
          Length = 344

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 1   MSIEEAGLREMEIMNKWQEQHNRLMEEANSAWYKERKSKP 40
           MSIEEAGL+EMEIMN WQE   R +EEANS+W+ +RK KP
Sbjct: 266 MSIEEAGLKEMEIMNTWQENTARFIEEANSSWHNDRKFKP 305


>Medtr3g091640.1 | PP2A regulatory subunit TAP46-like protein | HC |
           chr3:41711352-41715663 | 20130731
          Length = 404

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 1   MSIEEAGLREMEIMNKWQEQHNRLMEEANSAWYKERKSKP 40
           MSIEEAGL+EMEIMN WQE   R +EEANS+W+ +RK KP
Sbjct: 326 MSIEEAGLKEMEIMNTWQENTARFIEEANSSWHNDRKFKP 365