Miyakogusa Predicted Gene

Lj2g3v0179290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0179290.1 tr|I3S8R8|I3S8R8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,99.44,0,RUBISCOSMALL,Ribulose bisphosphate carboxylase, small
chain; no description,Ribulose bisphosphate ca,CUFF.37622.1
         (177 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain ...   318   2e-87
Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain ...   317   3e-87
Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain ...   300   4e-82
Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain ...   300   6e-82
Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain ...   300   7e-82
Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain ...   299   8e-82
Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain ...   298   2e-81
Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain ...   295   1e-80
Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain ...   270   4e-73
Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain ...   186   1e-47

>Medtr6g018300.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7006187-7007659 | 20130731
          Length = 177

 Score =  318 bits (814), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/176 (85%), Positives = 158/176 (89%), Gaps = 2/176 (1%)

Query: 4   SMISSPAVTTVNH--ANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPI 61
           ++ISS AVTTVN   AN+VAPFTGLKS AGFPVT+K NNDITSI SNGGRVNCMQVWPPI
Sbjct: 2   ALISSAAVTTVNRVSANLVAPFTGLKSSAGFPVTKKTNNDITSITSNGGRVNCMQVWPPI 61

Query: 62  GKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYW 121
           GKKKFETLSYLPPLT +QLAKEVEYLIRKGWVPCLEFE EKGFVYRENH SPGYYDGRYW
Sbjct: 62  GKKKFETLSYLPPLTEDQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDGRYW 121

Query: 122 TMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           TMWKLP+FG TD+SQVLKEL EAK AYP +FIRIIGFDN RQVQCISFIAH P  Y
Sbjct: 122 TMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 177


>Medtr6g018310.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr6:7009014-7010704 | 20130731
          Length = 180

 Score =  317 bits (813), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/179 (83%), Positives = 158/179 (88%), Gaps = 5/179 (2%)

Query: 4   SMISSPAVTTVN-----HANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVW 58
           ++ISS AVTTV+      AN+VAPFTGLKS A FPVT+K NNDITSIASNGGRVNCMQVW
Sbjct: 2   ALISSAAVTTVSRASSTQANLVAPFTGLKSSAAFPVTKKTNNDITSIASNGGRVNCMQVW 61

Query: 59  PPIGKKKFETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDG 118
           PPIGKKKFETLSYLPPLT EQLAKEVEYLIRKGWVPCLEFE EKGFVYRENH SPGYYDG
Sbjct: 62  PPIGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWVPCLEFELEKGFVYRENHSSPGYYDG 121

Query: 119 RYWTMWKLPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           RYWTMWKLP+FG TD+SQVLKEL EAK AYP +FIRIIGFDN RQVQCISFIAH P  Y
Sbjct: 122 RYWTMWKLPLFGATDSSQVLKELAEAKAAYPESFIRIIGFDNVRQVQCISFIAHTPATY 180


>Medtr7g007200.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1373181-1374551 | 20130731
          Length = 181

 Score =  300 bits (769), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 150/172 (87%), Gaps = 6/172 (3%)

Query: 11  VTTVNHAN-----MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKK 65
           VTTVN A+      VAPF GLKSMAGFP+T K N DITSI SNGGRVNCMQVWPPIGKKK
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPIT-KVNKDITSITSNGGRVNCMQVWPPIGKKK 69

Query: 66  FETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWK 125
           FETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWK
Sbjct: 70  FETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWK 129

Query: 126 LPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           LP+FG TDASQVLKEL+E   AYPNAF+RIIGFDN RQVQCISFIAH PE Y
Sbjct: 130 LPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007220.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1389672-1390718 | 20130731
          Length = 181

 Score =  300 bits (767), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 150/172 (87%), Gaps = 6/172 (3%)

Query: 11  VTTVNHAN-----MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKK 65
           VTTVN A+      VAPF GLKSMAGFPVT K N DITSI SNGGRVNCMQVWPPIGKKK
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKK 69

Query: 66  FETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWK 125
           FETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWK
Sbjct: 70  FETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWK 129

Query: 126 LPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           LP+FG TDASQVLKEL+E   AYPNAF+RIIGFDN RQVQCISFIAH P+ Y
Sbjct: 130 LPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPDVY 181


>Medtr7g007120.2 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349854-1358991 | 20130731
          Length = 181

 Score =  300 bits (767), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 149/172 (86%), Gaps = 6/172 (3%)

Query: 11  VTTVN-----HANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKK 65
           VTTVN      +  VAPF GLKSMAGFPVT K N DITSI SNGGRVNCMQVWPPIGKKK
Sbjct: 11  VTTVNRVSSVQSGAVAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKK 69

Query: 66  FETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWK 125
           FETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWK
Sbjct: 70  FETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWK 129

Query: 126 LPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           LP+FG TDASQVLKEL+E   AYPNAF+RIIGFDN RQVQCISFIAH PE Y
Sbjct: 130 LPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007120.3 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1357852-1358991 | 20130731
          Length = 181

 Score =  299 bits (766), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 145/171 (84%), Positives = 149/171 (87%), Gaps = 6/171 (3%)

Query: 12  TTVNHAN-----MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKF 66
           TTVN A+      VAPF GLKSMAGFPVT K N DITSI SNGGRVNCMQVWPPIGKKKF
Sbjct: 12  TTVNRASSVQSGAVAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 67  ETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 126
           ETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 127 PMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           P+FG TDASQVLKEL+E   AYPNAF+RIIGFDN RQVQCISFIAH PE Y
Sbjct: 131 PLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPEVY 181


>Medtr7g007120.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1349845-1351124 | 20130731
          Length = 181

 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 144/172 (83%), Positives = 148/172 (86%), Gaps = 6/172 (3%)

Query: 11  VTTVN-----HANMVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKK 65
           VTTVN      +  VAPF GLKSMAGFPVT K N DITSI SNGGRVNCMQVWPPIGKKK
Sbjct: 11  VTTVNRVSSVQSGAVAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKK 69

Query: 66  FETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWK 125
           FETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWK
Sbjct: 70  FETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWK 129

Query: 126 LPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           LP+FG TDASQVLKEL+E   AYPNAF+RIIGFDN RQVQCISFIAH P  Y
Sbjct: 130 LPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDNVRQVQCISFIAHTPAVY 181


>Medtr7g007230.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1393512-1395086 | 20130731
          Length = 181

 Score =  295 bits (756), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 148/171 (86%), Gaps = 6/171 (3%)

Query: 12  TTVNHAN-----MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKF 66
           TTVN A+      VAPF GLKSMAGFP+T K N DITSI SNGGRVNCMQVWPPIGKKKF
Sbjct: 12  TTVNRASPVQSGAVAPFVGLKSMAGFPIT-KVNKDITSITSNGGRVNCMQVWPPIGKKKF 70

Query: 67  ETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKL 126
           ETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWKL
Sbjct: 71  ETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWKL 130

Query: 127 PMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRPEGY 177
           P+FG TDASQVLKEL+E   AYPNAF+RIIGFD  RQVQCISFIAH P+ Y
Sbjct: 131 PLFGATDASQVLKELDEVVDAYPNAFVRIIGFDKVRQVQCISFIAHTPDVY 181


>Medtr7g007210.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr7:1383567-1386475 | 20130731
          Length = 192

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 136/155 (87%), Gaps = 6/155 (3%)

Query: 11  VTTVNHAN-----MVAPFTGLKSMAGFPVTRKANNDITSIASNGGRVNCMQVWPPIGKKK 65
           VTTVN A+      VAPF GLKSMAGFPVT K N DITSI SNGGRVNCMQVWPPIGKKK
Sbjct: 11  VTTVNRASSVQSGAVAPFVGLKSMAGFPVT-KVNKDITSITSNGGRVNCMQVWPPIGKKK 69

Query: 66  FETLSYLPPLTVEQLAKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWK 125
           FETLSYLPPLT EQLAKEVEYLIRKGWV CLEFETEKGFVYRENH SPGYYDGRYWTMWK
Sbjct: 70  FETLSYLPPLTREQLAKEVEYLIRKGWVACLEFETEKGFVYRENHSSPGYYDGRYWTMWK 129

Query: 126 LPMFGTTDASQVLKELEEAKKAYPNAFIRIIGFDN 160
           LP+FG TDASQVLKEL+E   AYPNAF+RIIGFDN
Sbjct: 130 LPLFGATDASQVLKELDEVVVAYPNAFVRIIGFDN 164


>Medtr4g127870.1 | ribulose bisphosphate carboxylase small chain |
           HC | chr4:53193172-53191727 | 20130731
          Length = 173

 Score =  186 bits (472), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 111/154 (72%), Gaps = 3/154 (1%)

Query: 23  FTGLKSMAG--FPVTRKANNDITSIASNGGRVNCMQVWPPIGKKKFETLSYLPPLTVEQL 80
           F GLKS +   +P    +        SNG +++CM+ W PI  KKFETLSYLPPL+ + +
Sbjct: 15  FVGLKSNSSSLWPSATYSIEWKKKTVSNGSKIHCMKTWNPINNKKFETLSYLPPLSDDSI 74

Query: 81  AKEVEYLIRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGTTDASQVLKE 140
           AKE++Y+++K W PCLEF+ E G ++R N + PGYYDGRYWT+WKLPMFG  D+SQVL E
Sbjct: 75  AKEIDYMLKKRWTPCLEFD-EFGCIHRANSQMPGYYDGRYWTLWKLPMFGCNDSSQVLNE 133

Query: 141 LEEAKKAYPNAFIRIIGFDNKRQVQCISFIAHRP 174
           + E KK YPNA+IR + FDNKR +Q ++F+ H+P
Sbjct: 134 INECKKTYPNAYIRCLAFDNKRHMQAMAFVIHKP 167