Miyakogusa Predicted Gene

Lj2g3v0167090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0167090.1 Non Characterized Hit- tr|K3YW91|K3YW91_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si018537,60.32,3e-17,seg,NULL,gene.g38556.t1.1
         (292 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016780.1 | plant/F16B3-5 protein | HC | chr6:6454223-6447...   206   1e-53

>Medtr6g016780.1 | plant/F16B3-5 protein | HC | chr6:6454223-6447946
           | 20130731
          Length = 348

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/251 (50%), Positives = 144/251 (57%), Gaps = 23/251 (9%)

Query: 1   MASRSDVVSHYKRKFYQRHVDPDLVVEPMNFGXXXXXXXXXXXXXXXXXXXX-NDQVXXX 59
           M+SR DVVSH+KRKFYQR++D DLVVEPM+                       NDQ    
Sbjct: 40  MSSRQDVVSHFKRKFYQRYLDNDLVVEPMSLSSSSQPPRPPATSSSSSPPPRSNDQARAR 99

Query: 60  XXXXX-XXXXXXXXXXXPNSTPLRWDRQTILFSVNAWXXXXXXXXXXXXXXRHLSQRAYR 118
                            PN  PLRWDRQTILFSVNAW              +HLS RAYR
Sbjct: 100 STGSTNRTSGTSATSVGPNPAPLRWDRQTILFSVNAWVLVVAFLAAVPIIPKHLSHRAYR 159

Query: 119 LSFMGTTCSSLYSLYSQYGIMFDEVNLLKLTSNFDEV---KLFLRGKWDRKLPKVISNIS 175
           LSFMGTTCSSLYSLYSQYG      N+  L   F  +   K F+           ++ ++
Sbjct: 160 LSFMGTTCSSLYSLYSQYGKP-RAWNMQALQVYFQSIIATKDFI------YFVYCLTFVT 212

Query: 176 DHMGATAKTIVLATAVAFALIPIICWAFENVAKFLRRNFSRSTLYRKYLEEPCVWVESNN 235
            H+            + FALIPI+CW+FE+VAKFLRRNFSRSTLYRKYLEEPCVWVESNN
Sbjct: 213 SHL-----------CLKFALIPILCWSFEHVAKFLRRNFSRSTLYRKYLEEPCVWVESNN 261

Query: 236 MTLNILTSHAE 246
            TLNILTSHAE
Sbjct: 262 TTLNILTSHAE 272