Miyakogusa Predicted Gene

Lj2g3v0156870.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0156870.3 Non Characterized Hit- tr|I1JDH7|I1JDH7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48939
PE,86.63,0,Metallo-beta-lactamase superfamily,Beta-lactamase-like;
INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE,CUFF.34348.3
         (236 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032500.1 | cleavage and polyadenylation specificity facto...   365   e-101
Medtr1g032500.2 | cleavage and polyadenylation specificity facto...   362   e-100
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...   148   4e-36
Medtr1g050492.1 | cleavage and polyadenylation specificity facto...    62   5e-10

>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 183/202 (90%)

Query: 1   MAIETLVLGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAAL 60
           M IE LVLGAGQE GKSCV+V INGKRIMFDCGMHM   DH RYPDF  IS  G+++ AL
Sbjct: 1   MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDAL 60

Query: 61  SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 120
            CIIITHFHLDHVGALAYFTEVCGY GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEE F
Sbjct: 61  DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120

Query: 121 TSENIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 180
           TS++IAEC+KKVIA+DL+QTVQVDEDLQIRAYYAGHVIGAAMFY KVGDAEMVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180

Query: 181 TADRHLEAAQIDRLRLDLLITE 202
           T DRHL AAQIDRLRLDLLITE
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITE 202


>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/202 (85%), Positives = 183/202 (90%)

Query: 1   MAIETLVLGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAAL 60
           M IE LVLGAGQE GKSCV+V INGKRIMFDCGMHM   DH RYPDF  IS  G+++ AL
Sbjct: 1   MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMHMRHTDHSRYPDFKKISDSGNFNDAL 60

Query: 61  SCIIITHFHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 120
            CIIITHFHLDHVGALAYFTEVCGY GP+YMTYPTKAL+PLMLEDYRKVMVDRRGEEE F
Sbjct: 61  DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120

Query: 121 TSENIAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 180
           TS++IAEC+KKVIA+DL+QTVQVDEDLQIRAYYAGHVIGAAMFY KVGDAEMVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180

Query: 181 TADRHLEAAQIDRLRLDLLITE 202
           T DRHL AAQIDRLRLDLLITE
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITE 202


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 13/198 (6%)

Query: 8   LGAGQEGGKSCVVVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAALSCIIITH 67
           LGAG E G+SCV +T  GK ++FDCG+H G       P F  I       + +  ++ITH
Sbjct: 27  LGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDP-----STVDVLLITH 81

Query: 68  FHLDHVGALAYFTEVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSEN 124
           FHLDH  +L YF E   ++G ++MTY TKA+  L+L DY    KV VD    + L+  ++
Sbjct: 82  FHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKVSKVSVD----DMLYDEQD 137

Query: 125 IAECIKKVIAIDLRQTVQVDEDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADR 184
           I   + K+  ID  QTV+V+  ++   Y AGHV+GAAMF   +    ++YTGDY+   DR
Sbjct: 138 INRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 196

Query: 185 HLEAAQIDRLRLDLLITE 202
           HL AA+  +   D+ I E
Sbjct: 197 HLRAAETPQFSPDVCIIE 214


>Medtr1g050492.1 | cleavage and polyadenylation specificity factor
           subunit 2 | HC | chr1:19478035-19486897 | 20130731
          Length = 740

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 20  VVTINGKRIMFDCGMHMGLLDHRRYPDFSLISSQGHYDAALSCIIITHFHLDHVGALAYF 79
           +V+I+   I+ DCG +    DH    D SL+       + +  ++++H    H+ AL Y 
Sbjct: 22  LVSIDSFNILIDCGWN----DHF---DPSLLQPLSRVASTIDAVLLSHPDTLHLAALPYA 74

Query: 80  TEVCGYRGPIYMTYPTKALAPLMLEDY---RKVMVDRRGEEELFTSENIAECIKKVIAID 136
            +  G   P+Y T P   L  L + D+   RK + D     +LFT ++I    + V  + 
Sbjct: 75  IKHLGLSAPVYSTEPVYRLGLLTMYDHFLSRKQVSDF----DLFTLDDIDSAFQTVTRLT 130

Query: 137 LRQTVQVD---EDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTADRHLEAAQIDR 193
             Q   +    E + I  + AGH++G  ++       +++Y  D+N   +RHL    +  
Sbjct: 131 YSQNHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGEDVIYAVDFNHRKERHLNGTVLGS 190

Query: 194 -LRLDLLITEFINVF 207
            +R  +LIT+  N  
Sbjct: 191 FVRPAVLITDAYNAL 205