Miyakogusa Predicted Gene

Lj2g3v0156840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0156840.1 tr|G7LAL7|G7LAL7_MEDTR 40S ribosomal protein S2
OS=Medicago truncatula GN=MTR_8g105340 PE=3 SV=1,97.03,0,seg,NULL;
RIBOSOMAL_S5,Ribosomal protein S5, N-terminal, conserved site;
Ribosomal_S5,Ribosomal prot,CUFF.34330.1
         (320 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g105340.1 | 40S ribosomal protein S2-4 | HC | chr8:4444680...   475   e-134
Medtr8g105340.2 | 40S ribosomal protein S2-4 | HC | chr8:4444680...   475   e-134
Medtr1g032450.1 | 40S ribosomal protein S2-4 | HC | chr1:1153763...   472   e-133
Medtr4g088615.1 | ribosomal protein S5 | HC | chr4:35234781-3523...    77   2e-14
Medtr4g088615.2 | ribosomal protein S5 | HC | chr4:35234781-3523...    52   8e-07

>Medtr8g105340.1 | 40S ribosomal protein S2-4 | HC |
           chr8:44446803-44449076 | 20130731
          Length = 279

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/236 (97%), Positives = 235/236 (99%)

Query: 85  DEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 144
           +EEEKWVPVTKLGRLV++GKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK
Sbjct: 44  EEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 103

Query: 145 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKI 204
           QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRG IILAKLSVIPVRRGYWGNKI
Sbjct: 104 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 163

Query: 205 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 264
           GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG
Sbjct: 164 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 223

Query: 265 NFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA 320
           NFVKATFDCL+KTYGFLTPEFWKETRF+KSPFQEYTDLLAKPTAKALILEEERV+A
Sbjct: 224 NFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERVEA 279


>Medtr8g105340.2 | 40S ribosomal protein S2-4 | HC |
           chr8:44446803-44448529 | 20130731
          Length = 270

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/236 (97%), Positives = 235/236 (99%)

Query: 85  DEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 144
           +EEEKWVPVTKLGRLV++GKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK
Sbjct: 35  EEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 94

Query: 145 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKI 204
           QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRG IILAKLSVIPVRRGYWGNKI
Sbjct: 95  QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 154

Query: 205 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 264
           GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG
Sbjct: 155 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 214

Query: 265 NFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA 320
           NFVKATFDCL+KTYGFLTPEFWKETRF+KSPFQEYTDLLAKPTAKALILEEERV+A
Sbjct: 215 NFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTAKALILEEERVEA 270


>Medtr1g032450.1 | 40S ribosomal protein S2-4 | HC |
           chr1:11537638-11539731 | 20130731
          Length = 277

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/236 (96%), Positives = 234/236 (99%)

Query: 85  DEEEKWVPVTKLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 144
           +EEEKWVPVTKLGRLV++GKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK
Sbjct: 42  EEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQK 101

Query: 145 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKI 204
           QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRG IILAKLSVIPVRRGYWGNKI
Sbjct: 102 QTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKI 161

Query: 205 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 264
           GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG
Sbjct: 162 GKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLG 221

Query: 265 NFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKALILEEERVDA 320
           NFVKATFDCL+KTYGFLTPEFWKETRF+KSPFQEYTD+LAKPT KALILEEERV+A
Sbjct: 222 NFVKATFDCLMKTYGFLTPEFWKETRFSKSPFQEYTDMLAKPTTKALILEEERVEA 277


>Medtr4g088615.1 | ribosomal protein S5 | HC |
           chr4:35234781-35236988 | 20130731
          Length = 303

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 17/165 (10%)

Query: 132 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLS 191
           L++ V+++  V K  + G++ RF+A VVVGD  G VG+GV  +KEV +A++   I A+ +
Sbjct: 147 LEERVIQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINARRN 206

Query: 192 VIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 251
           +I V        + K  T P +  G  G+  V + PA  G+G++A    + VL+ AG+++
Sbjct: 207 LIRV-------PMTKYLTFPHRADGDYGASKVMLRPASPGTGVIAGGSVRIVLEMAGVEN 259

Query: 252 VFTSSRGSTKTLGNFVKATFDCL--LKTY-------GFLTPEFWK 287
                 GS   L N  +AT   +  +K Y       G    E WK
Sbjct: 260 ALGKQLGSDNALNN-ARATIAAVQKMKQYSEVAEERGIPMEELWK 303


>Medtr4g088615.2 | ribosomal protein S5 | HC |
           chr4:35234781-35235951 | 20130731
          Length = 251

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query: 132 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLS 191
           L++ V+++  V K  + G++ RF+A VVVGD  G VG+GV  +KEV +A++   I A+ +
Sbjct: 147 LEERVIQVRRVTKVVKGGKQMRFRAIVVVGDKQGRVGVGVGKAKEVVSAVQKSAINARRN 206

Query: 192 VIPV 195
           +I V
Sbjct: 207 LIRV 210