Miyakogusa Predicted Gene

Lj2g3v0044990.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0044990.3 Non Characterized Hit- tr|I1HM45|I1HM45_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,67.69,3e-19,SNF5,SNF5/SMARCB1/INI1,CUFF.34158.3
         (81 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g124260.1 | chromatin structure-remodeling complex protein...   144   1e-35

>Medtr4g124260.1 | chromatin structure-remodeling complex protein
          BSH | HC | chr4:51314560-51311204 | 20130731
          Length = 240

 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 71/77 (92%)

Query: 1  MKTPASVFYRNPVKFRMPTAENLVPIRLDIEIDAKRYKDAFTWNPSDPDHEVGVFARRTV 60
          MKTP S FYRNPVKFRMPT+ENLVPIRLDIEID  RYKDAFTWNPSDPD EV VFA+RTV
Sbjct: 1  MKTPVSAFYRNPVKFRMPTSENLVPIRLDIEIDGHRYKDAFTWNPSDPDSEVVVFAKRTV 60

Query: 61 KDLKLPPPFVTQIAQSI 77
          +DLKLPPPFVTQIAQSI
Sbjct: 61 RDLKLPPPFVTQIAQSI 77